Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72133.t1 | XP_013447039.1 | 92.5 | 332 | 12 | 1 | 1 | 319 | 5 | 336 | 5.10E-167 | 597 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72133.t1 | Q9CAD0 | 34.7 | 331 | 157 | 9 | 19 | 320 | 134 | 434 | 5.3e-40 | 166.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72133.t1 | A0A072TV58 | 92.5 | 332 | 12 | 1 | 1 | 319 | 5 | 336 | 3.7e-167 | 597.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene72133.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72133.t1 | MTR_8g098275 | 92.470 | 332 | 12 | 1 | 1 | 319 | 5 | 336 | 0.0 | 626 |
MS.gene72133.t1 | MTR_8g098275 | 92.557 | 309 | 15 | 1 | 19 | 319 | 121 | 429 | 0.0 | 581 |
MS.gene72133.t1 | MTR_8g098275 | 97.059 | 272 | 8 | 0 | 48 | 319 | 1 | 272 | 0.0 | 548 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72133.t1 | AT1G63650 | 34.441 | 331 | 158 | 10 | 19 | 320 | 134 | 434 | 5.17e-50 | 175 |
MS.gene72133.t1 | AT1G63650 | 34.441 | 331 | 158 | 10 | 19 | 320 | 134 | 434 | 5.17e-50 | 175 |
MS.gene72133.t1 | AT1G63650 | 34.441 | 331 | 158 | 10 | 19 | 320 | 134 | 434 | 5.17e-50 | 175 |
MS.gene72133.t1 | AT5G41315 | 34.463 | 354 | 159 | 14 | 19 | 320 | 138 | 470 | 1.44e-49 | 175 |
MS.gene72133.t1 | AT5G41315 | 34.463 | 354 | 159 | 14 | 19 | 320 | 143 | 475 | 2.30e-49 | 174 |
MS.gene72133.t1 | AT5G41315 | 34.463 | 354 | 159 | 14 | 19 | 320 | 146 | 478 | 2.45e-49 | 174 |
Find 54 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAACACAAAAGCTTGATTC+TGG | 0.267090 | 4.2:-6435388 | None:intergenic |
AGATACCGAGTGGTACTATT+TGG | 0.275916 | 4.2:+6433792 | None:intergenic |
ATTATGTCATATCCAACTTC+TGG | 0.286568 | 4.2:-6435049 | None:intergenic |
AATGTAGCTCGAGCGTTAAT+AGG | 0.287585 | 4.2:-6434956 | None:intergenic |
AAAGTTATTGAAGAAGATTT+TGG | 0.310498 | 4.2:+6435462 | MS.gene72133:CDS |
AGGTCCCTTGTCTTGGCCTT+TGG | 0.323833 | 4.2:-6435435 | None:intergenic |
GGTTGAAAGCTGGCAAGTTT+TGG | 0.326038 | 4.2:+6435144 | MS.gene72133:CDS |
AATATTACCTTACTATTTGA+AGG | 0.331430 | 4.2:-6435652 | None:intergenic |
CCAGGAAGAGCTCTAGAAAA+TGG | 0.340134 | 4.2:+6433961 | MS.gene72133:intron |
TGCTCAGAGTGCATCAATTC+AGG | 0.344767 | 4.2:+6434292 | MS.gene72133:intron |
TAATGCCAATCTTCACTTAG+AGG | 0.362258 | 4.2:-6435292 | None:intergenic |
AATGCATCTCCATTGTTAAC+TGG | 0.375501 | 4.2:-6435351 | None:intergenic |
CTAGAAAATGGCCAACCAAT+TGG | 0.381031 | 4.2:+6433973 | MS.gene72133:CDS |
TTGCAATCTTCTCCAACCTT+AGG | 0.396557 | 4.2:-6435241 | None:intergenic |
GTTGAATTAATTCCAGAAGT+TGG | 0.399420 | 4.2:+6435037 | MS.gene72133:CDS |
TCAGCATCAATTAGCCCAAT+TGG | 0.404126 | 4.2:-6433988 | None:intergenic |
AATGCATTTGAGCTACCATT+AGG | 0.406315 | 4.2:-6435088 | None:intergenic |
TCAACCATGAATGTTTCATT+TGG | 0.414054 | 4.2:-6435127 | None:intergenic |
AAATATTTCTTCTGCTCCTA+AGG | 0.414742 | 4.2:+6435225 | MS.gene72133:CDS |
TGTTTCATTTGGTAGTTGAT+TGG | 0.427906 | 4.2:-6435116 | None:intergenic |
ACTACCAAATGAAACATTCA+TGG | 0.431417 | 4.2:+6435123 | MS.gene72133:CDS |
TAGAAAATGGCCAACCAATT+GGG | 0.432090 | 4.2:+6433974 | MS.gene72133:CDS |
ATGTAGCTCGAGCGTTAATA+GGG | 0.437263 | 4.2:-6434955 | None:intergenic |
AATGGTTCCTTCAAATAGTA+AGG | 0.449741 | 4.2:+6435645 | MS.gene72133:CDS |
ATTTCTTCTGCTCCTAAGGT+TGG | 0.458378 | 4.2:+6435229 | MS.gene72133:CDS |
CTTGGCCTTTGGAAATTCAC+AGG | 0.474066 | 4.2:-6435424 | None:intergenic |
AACACAGCAACCTCTCCTAA+TGG | 0.474418 | 4.2:+6435073 | MS.gene72133:CDS |
ATGAAAGGGGTTATTGAGCT+AGG | 0.483817 | 4.2:+6434738 | MS.gene72133:CDS |
TGGATCCTCTAAGTGAAGAT+TGG | 0.499708 | 4.2:+6435287 | MS.gene72133:CDS |
TATGCAGTCACTTGAATTCA+CGG | 0.508466 | 4.2:-6435197 | None:intergenic |
TTCGTATTCAACATTGGCCA+AGG | 0.510865 | 4.2:+6433826 | MS.gene72133:CDS |
TCCTTCTTTCTGACAAAACA+TGG | 0.517100 | 4.2:-6435582 | None:intergenic |
TCAATAACCCCTTTCATGAA+AGG | 0.530003 | 4.2:-6434732 | None:intergenic |
AAACATTCATGGTTGAAAGC+TGG | 0.541473 | 4.2:+6435134 | MS.gene72133:CDS |
CATCAATTAGCCCAATTGGT+TGG | 0.552695 | 4.2:-6433984 | None:intergenic |
GAAGAGCAAAGCTAAATGAA+AGG | 0.559544 | 4.2:+6435605 | MS.gene72133:CDS |
TGGTTTGCTTGAATCTCAAG+AGG | 0.591791 | 4.2:+6435510 | MS.gene72133:CDS |
GTTCCACGGATGCACACTGA+TGG | 0.593993 | 4.2:+6435490 | MS.gene72133:CDS |
ACAAGACTAGAGGCTGATGA+AGG | 0.599190 | 4.2:+6435553 | MS.gene72133:CDS |
AATTTCCAAAGGCCAAGACA+AGG | 0.606654 | 4.2:+6435430 | MS.gene72133:CDS |
ACCGAAAAGACTTACGTGAT+CGG | 0.607356 | 4.2:-6434766 | None:intergenic |
ATGTCCTTCGTATTCAACAT+TGG | 0.611258 | 4.2:+6433820 | MS.gene72133:CDS |
GAGGAGAATGACTATAGAGA+AGG | 0.612043 | 4.2:+6435529 | MS.gene72133:CDS |
AAACCATCAGTGTGCATCCG+TGG | 0.620753 | 4.2:-6435493 | None:intergenic |
TCGTATTCAACATTGGCCAA+GGG | 0.620796 | 4.2:+6433827 | MS.gene72133:CDS |
ATTTGAGCTACCATTAGGAG+AGG | 0.628279 | 4.2:-6435083 | None:intergenic |
AAGCAATGACCAGTTAACAA+TGG | 0.630188 | 4.2:+6435342 | MS.gene72133:CDS |
TAGAGAAGGTACAAGACTAG+AGG | 0.643862 | 4.2:+6435543 | MS.gene72133:CDS |
GTGTGCCTGTGAATTTCCAA+AGG | 0.646463 | 4.2:+6435419 | MS.gene72133:CDS |
ATTTCCAAAGGCCAAGACAA+GGG | 0.685503 | 4.2:+6435431 | MS.gene72133:CDS |
TTGGCCAATGTTGAATACGA+AGG | 0.685744 | 4.2:-6433824 | None:intergenic |
GCAAACCAAATAGTACCACT+CGG | 0.699870 | 4.2:-6433797 | None:intergenic |
TTGAATTCGAGAAATAACGA+AGG | 0.725975 | 4.2:+6434977 | MS.gene72133:CDS |
ATGATCTCACAGATACCGAG+TGG | 0.748813 | 4.2:+6433782 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAACTATTAATAACTAT+TGG | - | chr4.2:6434370-6434389 | None:intergenic | 15.0% |
!! | ATTAATGTTATAAAAGACAA+TGG | - | chr4.2:6434796-6434815 | None:intergenic | 15.0% |
!! | TTTGGAAATTAATAGAATAA+AGG | - | chr4.2:6434596-6434615 | None:intergenic | 15.0% |
!! | AAATTTACATGTGTTAAGAT+AGG | + | chr4.2:6434416-6434435 | MS.gene72133:intron | 20.0% |
!! | AATATTACCTTACTATTTGA+AGG | - | chr4.2:6435655-6435674 | None:intergenic | 20.0% |
!! | GTACAATTTAAAAACAGAAA+AGG | - | chr4.2:6433895-6433914 | None:intergenic | 20.0% |
!!! | AAAGTTATTGAAGAAGATTT+TGG | + | chr4.2:6435462-6435481 | MS.gene72133:CDS | 20.0% |
!!! | GATTTTTGGTTTCTAAAATT+TGG | - | chr4.2:6434652-6434671 | None:intergenic | 20.0% |
! | AACATTATTACAAGAAGTTG+AGG | - | chr4.2:6434840-6434859 | None:intergenic | 25.0% |
! | ACATTATTACAAGAAGTTGA+GGG | - | chr4.2:6434839-6434858 | None:intergenic | 25.0% |
! | ATCCATCCTTATTACTATTT+GGG | + | chr4.2:6434492-6434511 | MS.gene72133:intron | 25.0% |
! | GGTGTACTTATAAAAAGAAA+GGG | + | chr4.2:6434161-6434180 | MS.gene72133:intron | 25.0% |
! | TAACATTTATCTTCTTCCTT+TGG | + | chr4.2:6434231-6434250 | MS.gene72133:intron | 25.0% |
! | TATCCATCCTTATTACTATT+TGG | + | chr4.2:6434491-6434510 | MS.gene72133:intron | 25.0% |
! | TGGAGTTCATTTATAATACA+AGG | - | chr4.2:6434350-6434369 | None:intergenic | 25.0% |
!! | AAATTACACAATGCATTGAT+AGG | - | chr4.2:6434674-6434693 | None:intergenic | 25.0% |
!! | TATAAAGGCGTGTATAAAAA+GGG | - | chr4.2:6434129-6434148 | None:intergenic | 25.0% |
!! | TTATAAAGGCGTGTATAAAA+AGG | - | chr4.2:6434130-6434149 | None:intergenic | 25.0% |
!!! | AGATTATTAGTCTTTAGGTT+TGG | - | chr4.2:6434614-6434633 | None:intergenic | 25.0% |
!!! | GTCTTAGATTATTAGTCTTT+AGG | - | chr4.2:6434619-6434638 | None:intergenic | 25.0% |
!!! | GTTTTTAACTCTTAGATCAA+TGG | + | chr4.2:6435627-6435646 | MS.gene72133:CDS | 25.0% |
AAAAAAGATGAGATTACCCT+TGG | - | chr4.2:6433846-6433865 | None:intergenic | 30.0% | |
AAATATTTCTTCTGCTCCTA+AGG | + | chr4.2:6435225-6435244 | MS.gene72133:CDS | 30.0% | |
AATGGTTCCTTCAAATAGTA+AGG | + | chr4.2:6435645-6435664 | MS.gene72133:CDS | 30.0% | |
ACTACCAAATGAAACATTCA+TGG | + | chr4.2:6435123-6435142 | MS.gene72133:CDS | 30.0% | |
ACTAGAAAGGAACACAAAAA+AGG | - | chr4.2:6433869-6433888 | None:intergenic | 30.0% | |
ACTTCTTGTAATAATGTTGC+TGG | + | chr4.2:6434842-6434861 | MS.gene72133:intron | 30.0% | |
ATTATGTCATATCCAACTTC+TGG | - | chr4.2:6435052-6435071 | None:intergenic | 30.0% | |
GCCTTTATAAACTCACAAAA+GGG | + | chr4.2:6434140-6434159 | MS.gene72133:intron | 30.0% | |
GGGTGTACTTATAAAAAGAA+AGG | + | chr4.2:6434160-6434179 | MS.gene72133:intron | 30.0% | |
GTTGAATTAATTCCAGAAGT+TGG | + | chr4.2:6435037-6435056 | MS.gene72133:CDS | 30.0% | |
TAACCAAAAAATGAGCTTAG+TGG | + | chr4.2:6435267-6435286 | MS.gene72133:CDS | 30.0% | |
TCAACCATGAATGTTTCATT+TGG | - | chr4.2:6435130-6435149 | None:intergenic | 30.0% | |
TGTTTAAGGAACAAAACCAA+AGG | - | chr4.2:6434250-6434269 | None:intergenic | 30.0% | |
TTAGACTAAACACTAAAGAG+TGG | - | chr4.2:6434456-6434475 | None:intergenic | 30.0% | |
TTCCCAAATAGTAATAAGGA+TGG | - | chr4.2:6434497-6434516 | None:intergenic | 30.0% | |
TTGAATTCGAGAAATAACGA+AGG | + | chr4.2:6434977-6434996 | MS.gene72133:CDS | 30.0% | |
! | ACCCTTTTGTGAGTTTATAA+AGG | - | chr4.2:6434144-6434163 | None:intergenic | 30.0% |
! | CTTCTTCAATAACTTTTGTG+AGG | - | chr4.2:6435458-6435477 | None:intergenic | 30.0% |
! | TGTGTTTTCCTTTCATGAAA+GGG | + | chr4.2:6434724-6434743 | MS.gene72133:CDS | 30.0% |
! | TGTTTCATTTGGTAGTTGAT+TGG | - | chr4.2:6435119-6435138 | None:intergenic | 30.0% |
!! | CAATGCATTGATAGGATTTT+TGG | - | chr4.2:6434666-6434685 | None:intergenic | 30.0% |
AAACATTCATGGTTGAAAGC+TGG | + | chr4.2:6435134-6435153 | MS.gene72133:CDS | 35.0% | |
AAGCAATGACCAGTTAACAA+TGG | + | chr4.2:6435342-6435361 | MS.gene72133:CDS | 35.0% | |
AATGCATCTCCATTGTTAAC+TGG | - | chr4.2:6435354-6435373 | None:intergenic | 35.0% | |
AATGCATTTGAGCTACCATT+AGG | - | chr4.2:6435091-6435110 | None:intergenic | 35.0% | |
ACAGAAAAGGCAAACTAGAA+AGG | - | chr4.2:6433882-6433901 | None:intergenic | 35.0% | |
ACTAAGAACACACAAATGTG+AGG | - | chr4.2:6433938-6433957 | None:intergenic | 35.0% | |
ATGTCCTTCGTATTCAACAT+TGG | + | chr4.2:6433820-6433839 | MS.gene72133:CDS | 35.0% | |
ATTACTATTTGGGAACCTGT+AGG | + | chr4.2:6434502-6434521 | MS.gene72133:intron | 35.0% | |
CAAACACAAAAGCTTGATTC+TGG | - | chr4.2:6435391-6435410 | None:intergenic | 35.0% | |
CAGGTTCCCAAATAGTAATA+AGG | - | chr4.2:6434501-6434520 | None:intergenic | 35.0% | |
CGCCTTTATAAACTCACAAA+AGG | + | chr4.2:6434139-6434158 | MS.gene72133:intron | 35.0% | |
GAAGAGCAAAGCTAAATGAA+AGG | + | chr4.2:6435605-6435624 | MS.gene72133:CDS | 35.0% | |
GACAGGTTCAAATGTGTTTA+AGG | - | chr4.2:6434264-6434283 | None:intergenic | 35.0% | |
TAATGCCAATCTTCACTTAG+AGG | - | chr4.2:6435295-6435314 | None:intergenic | 35.0% | |
TAGAAAATGGCCAACCAATT+GGG | + | chr4.2:6433974-6433993 | MS.gene72133:CDS | 35.0% | |
TATGCAGTCACTTGAATTCA+CGG | - | chr4.2:6435200-6435219 | None:intergenic | 35.0% | |
TCAATAACCCCTTTCATGAA+AGG | - | chr4.2:6434735-6434754 | None:intergenic | 35.0% | |
TCCTTCTTTCTGACAAAACA+TGG | - | chr4.2:6435585-6435604 | None:intergenic | 35.0% | |
TGTTAAGATAGGTCTTGCTT+TGG | + | chr4.2:6434427-6434446 | MS.gene72133:intron | 35.0% | |
TTGTGTGTTCTTAGTTTACC+AGG | + | chr4.2:6433943-6433962 | MS.gene72133:intron | 35.0% | |
! | ACCATGTTTTGTCAGAAAGA+AGG | + | chr4.2:6435581-6435600 | MS.gene72133:CDS | 35.0% |
! | ATTCTTCGCATTTTGTGTGA+AGG | + | chr4.2:6434865-6434884 | MS.gene72133:intron | 35.0% |
! | CAGAATCAAGCTTTTGTGTT+TGG | + | chr4.2:6435389-6435408 | MS.gene72133:CDS | 35.0% |
! | GTGTGTTTTCCTTTCATGAA+AGG | + | chr4.2:6434723-6434742 | MS.gene72133:CDS | 35.0% |
! | GTGTTTTCCTTTCATGAAAG+GGG | + | chr4.2:6434725-6434744 | MS.gene72133:CDS | 35.0% |
!! | AGCTTTTGTGTTTGGAACAA+AGG | + | chr4.2:6435397-6435416 | MS.gene72133:CDS | 35.0% |
!!! | GATCCACTAAGCTCATTTTT+TGG | - | chr4.2:6435273-6435292 | None:intergenic | 35.0% |
AAGGCGTGTATAAAAAGGGA+CGG | - | chr4.2:6434125-6434144 | None:intergenic | 40.0% | |
AATGTAGCTCGAGCGTTAAT+AGG | - | chr4.2:6434959-6434978 | None:intergenic | 40.0% | |
AATTGATGCACTCTGAGCAT+GGG | - | chr4.2:6434291-6434310 | None:intergenic | 40.0% | |
AATTTCCAAAGGCCAAGACA+AGG | + | chr4.2:6435430-6435449 | MS.gene72133:CDS | 40.0% | |
ACCGAAAAGACTTACGTGAT+CGG | - | chr4.2:6434769-6434788 | None:intergenic | 40.0% | |
ATGAAAGGGGTTATTGAGCT+AGG | + | chr4.2:6434738-6434757 | MS.gene72133:CDS | 40.0% | |
ATGTAGCTCGAGCGTTAATA+GGG | - | chr4.2:6434958-6434977 | None:intergenic | 40.0% | |
ATTTCCAAAGGCCAAGACAA+GGG | + | chr4.2:6435431-6435450 | MS.gene72133:CDS | 40.0% | |
ATTTCTTCTGCTCCTAAGGT+TGG | + | chr4.2:6435229-6435248 | MS.gene72133:CDS | 40.0% | |
ATTTGAGCTACCATTAGGAG+AGG | - | chr4.2:6435086-6435105 | None:intergenic | 40.0% | |
CATCAATTAGCCCAATTGGT+TGG | - | chr4.2:6433987-6434006 | None:intergenic | 40.0% | |
CTAGAAAATGGCCAACCAAT+TGG | + | chr4.2:6433973-6433992 | MS.gene72133:CDS | 40.0% | |
GAGGAGAATGACTATAGAGA+AGG | + | chr4.2:6435529-6435548 | MS.gene72133:CDS | 40.0% | |
GCAAACCAAATAGTACCACT+CGG | - | chr4.2:6433800-6433819 | None:intergenic | 40.0% | |
TCAATGTAATTGCACGTCTC+TGG | - | chr4.2:6434533-6434552 | None:intergenic | 40.0% | |
TCAGCATCAATTAGCCCAAT+TGG | - | chr4.2:6433991-6434010 | None:intergenic | 40.0% | |
TCGTATTCAACATTGGCCAA+GGG | + | chr4.2:6433827-6433846 | MS.gene72133:CDS | 40.0% | |
TGGATCCTCTAAGTGAAGAT+TGG | + | chr4.2:6435287-6435306 | MS.gene72133:CDS | 40.0% | |
TTCGTATTCAACATTGGCCA+AGG | + | chr4.2:6433826-6433845 | MS.gene72133:CDS | 40.0% | |
TTGCAATCTTCTCCAACCTT+AGG | - | chr4.2:6435244-6435263 | None:intergenic | 40.0% | |
TTGGCCAATGTTGAATACGA+AGG | - | chr4.2:6433827-6433846 | None:intergenic | 40.0% | |
! | ACCGATCACGTAAGTCTTTT+CGG | + | chr4.2:6434765-6434784 | MS.gene72133:intron | 40.0% |
! | AGTGTTGCTCTTTCTTTAGC+TGG | + | chr4.2:6434060-6434079 | MS.gene72133:intron | 40.0% |
! | TAGAGAAGGTACAAGACTAG+AGG | + | chr4.2:6435543-6435562 | MS.gene72133:CDS | 40.0% |
!! | AGATTTTGGTCGAAGTTCCA+CGG | + | chr4.2:6435476-6435495 | MS.gene72133:CDS | 40.0% |
!! | CGCATTTTGTGTGAAGGTAT+TGG | + | chr4.2:6434871-6434890 | MS.gene72133:intron | 40.0% |
!! | TGGTTTGCTTGAATCTCAAG+AGG | + | chr4.2:6435510-6435529 | MS.gene72133:CDS | 40.0% |
AACACAGCAACCTCTCCTAA+TGG | + | chr4.2:6435073-6435092 | MS.gene72133:CDS | 45.0% | |
ACAAGACTAGAGGCTGATGA+AGG | + | chr4.2:6435553-6435572 | MS.gene72133:CDS | 45.0% | |
ACGTCTCTGGTATTACCTAC+AGG | - | chr4.2:6434520-6434539 | None:intergenic | 45.0% | |
AGCAACACTATACCTTTGCG+AGG | - | chr4.2:6434049-6434068 | None:intergenic | 45.0% | |
GAATTGATGCACTCTGAGCA+TGG | - | chr4.2:6434292-6434311 | None:intergenic | 45.0% | |
GTGTGCCTGTGAATTTCCAA+AGG | + | chr4.2:6435419-6435438 | MS.gene72133:CDS | 45.0% | |
TCGTCTCAACTTTCAGACAG+TGG | + | chr4.2:6434701-6434720 | MS.gene72133:intron | 45.0% | |
TGCTCAGAGTGCATCAATTC+AGG | + | chr4.2:6434292-6434311 | MS.gene72133:intron | 45.0% | |
! | AGCTGGCTTCTTCTTTCTTC+TGG | + | chr4.2:6434077-6434096 | MS.gene72133:intron | 45.0% |
! | CTTGGCCTTTGGAAATTCAC+AGG | - | chr4.2:6435427-6435446 | None:intergenic | 45.0% |
! | GGTTGAAAGCTGGCAAGTTT+TGG | + | chr4.2:6435144-6435163 | MS.gene72133:CDS | 45.0% |
! | TTTTGTGAGGTCCCTTGTCT+TGG | - | chr4.2:6435445-6435464 | None:intergenic | 45.0% |
!! | CCAGGAAGAGCTCTAGAAAA+TGG | + | chr4.2:6433961-6433980 | MS.gene72133:intron | 45.0% |
!!! | CCATTTTCTAGAGCTCTTCC+TGG | - | chr4.2:6433964-6433983 | None:intergenic | 45.0% |
AAACCATCAGTGTGCATCCG+TGG | - | chr4.2:6435496-6435515 | None:intergenic | 50.0% | |
CTCTGAGCATGGGAGAAGAC+AGG | - | chr4.2:6434281-6434300 | None:intergenic | 55.0% | |
GTTCCACGGATGCACACTGA+TGG | + | chr4.2:6435490-6435509 | MS.gene72133:CDS | 55.0% | |
! | AGGTCCCTTGTCTTGGCCTT+TGG | - | chr4.2:6435438-6435457 | None:intergenic | 55.0% |
TAGTCGCGCTCTCCTCGCAA+AGG | + | chr4.2:6434034-6434053 | MS.gene72133:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 6433794 | 6435684 | 6433794 | ID=MS.gene72133 |
chr4.2 | mRNA | 6433794 | 6435684 | 6433794 | ID=MS.gene72133.t1;Parent=MS.gene72133 |
chr4.2 | exon | 6433794 | 6433848 | 6433794 | ID=MS.gene72133.t1.exon1;Parent=MS.gene72133.t1 |
chr4.2 | CDS | 6433794 | 6433848 | 6433794 | ID=cds.MS.gene72133.t1;Parent=MS.gene72133.t1 |
chr4.2 | exon | 6433965 | 6434014 | 6433965 | ID=MS.gene72133.t1.exon2;Parent=MS.gene72133.t1 |
chr4.2 | CDS | 6433965 | 6434014 | 6433965 | ID=cds.MS.gene72133.t1;Parent=MS.gene72133.t1 |
chr4.2 | exon | 6434299 | 6434313 | 6434299 | ID=MS.gene72133.t1.exon3;Parent=MS.gene72133.t1 |
chr4.2 | CDS | 6434299 | 6434313 | 6434299 | ID=cds.MS.gene72133.t1;Parent=MS.gene72133.t1 |
chr4.2 | exon | 6434717 | 6434773 | 6434717 | ID=MS.gene72133.t1.exon4;Parent=MS.gene72133.t1 |
chr4.2 | CDS | 6434717 | 6434773 | 6434717 | ID=cds.MS.gene72133.t1;Parent=MS.gene72133.t1 |
chr4.2 | exon | 6434887 | 6435684 | 6434887 | ID=MS.gene72133.t1.exon5;Parent=MS.gene72133.t1 |
chr4.2 | CDS | 6434887 | 6435684 | 6434887 | ID=cds.MS.gene72133.t1;Parent=MS.gene72133.t1 |
Gene Sequence |
Protein sequence |