Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72173.t1 | KEH21040.1 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 1.10E-114 | 422.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72173.t1 | O04193 | 61.5 | 182 | 63 | 2 | 1 | 175 | 1 | 182 | 3.2e-62 | 239.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72173.t1 | A0A072U5A9 | 98.1 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 8.0e-115 | 422.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene72173.t1 | TF | LIM |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72173.t1 | MTR_8g097300 | 98.104 | 211 | 4 | 0 | 1 | 211 | 1 | 211 | 6.53e-155 | 427 |
MS.gene72173.t1 | MTR_3g070050 | 60.656 | 183 | 64 | 1 | 1 | 175 | 1 | 183 | 3.48e-76 | 228 |
MS.gene72173.t1 | MTR_8g031490 | 59.538 | 173 | 68 | 1 | 1 | 171 | 1 | 173 | 1.07e-73 | 222 |
MS.gene72173.t1 | MTR_7g076720 | 53.302 | 212 | 95 | 2 | 1 | 208 | 1 | 212 | 1.07e-72 | 219 |
MS.gene72173.t1 | MTR_1g017950 | 55.367 | 177 | 67 | 4 | 1 | 167 | 1 | 175 | 2.13e-61 | 190 |
MS.gene72173.t1 | MTR_4g106800 | 52.000 | 175 | 77 | 2 | 2 | 169 | 3 | 177 | 6.29e-61 | 188 |
MS.gene72173.t1 | MTR_4g106800 | 50.704 | 71 | 35 | 0 | 93 | 163 | 2 | 72 | 4.23e-18 | 78.6 |
MS.gene72173.t1 | MTR_3g070050 | 56.738 | 141 | 53 | 1 | 43 | 175 | 1 | 141 | 2.36e-51 | 163 |
MS.gene72173.t1 | MTR_3g070050 | 42.424 | 66 | 38 | 0 | 3 | 68 | 61 | 126 | 2.88e-15 | 70.5 |
MS.gene72173.t1 | MTR_3g070033 | 67.213 | 61 | 20 | 0 | 115 | 175 | 6 | 66 | 6.32e-25 | 93.2 |
MS.gene72173.t1 | MTR_1g106100 | 51.471 | 68 | 33 | 0 | 92 | 159 | 57 | 124 | 2.89e-19 | 81.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72173.t1 | AT3G61230 | 54.930 | 213 | 87 | 3 | 2 | 210 | 3 | 210 | 2.67e-79 | 236 |
MS.gene72173.t1 | AT3G61230 | 53.425 | 73 | 34 | 0 | 93 | 165 | 2 | 74 | 1.32e-21 | 89.0 |
MS.gene72173.t1 | AT2G45800 | 56.250 | 208 | 85 | 3 | 1 | 202 | 1 | 208 | 1.73e-77 | 232 |
MS.gene72173.t1 | AT2G39900 | 61.538 | 182 | 63 | 2 | 1 | 175 | 1 | 182 | 4.06e-77 | 230 |
MS.gene72173.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
MS.gene72173.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
MS.gene72173.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
MS.gene72173.t1 | AT3G55770 | 57.286 | 199 | 79 | 1 | 1 | 193 | 1 | 199 | 1.63e-75 | 226 |
MS.gene72173.t1 | AT1G01780 | 53.659 | 205 | 88 | 2 | 1 | 203 | 1 | 200 | 3.25e-74 | 223 |
MS.gene72173.t1 | AT3G55770 | 48.927 | 233 | 79 | 2 | 1 | 193 | 1 | 233 | 5.39e-68 | 208 |
MS.gene72173.t1 | AT1G10200 | 54.802 | 177 | 68 | 4 | 1 | 167 | 1 | 175 | 1.62e-61 | 190 |
MS.gene72173.t1 | AT2G45800 | 54.217 | 166 | 70 | 3 | 43 | 202 | 12 | 177 | 3.58e-53 | 169 |
MS.gene72173.t1 | AT2G45800 | 48.438 | 64 | 33 | 0 | 3 | 66 | 68 | 131 | 5.39e-15 | 70.9 |
MS.gene72173.t1 | AT3G55770 | 53.906 | 128 | 53 | 1 | 1 | 122 | 1 | 128 | 4.17e-42 | 139 |
MS.gene72173.t1 | AT3G55770 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 2.96e-23 | 91.3 |
MS.gene72173.t1 | AT3G55770 | 54.098 | 122 | 50 | 1 | 1 | 116 | 1 | 122 | 4.02e-39 | 131 |
MS.gene72173.t1 | AT3G55770 | 46.392 | 97 | 41 | 1 | 95 | 191 | 3 | 88 | 2.22e-23 | 91.3 |
MS.gene72173.t1 | AT1G10200 | 51.145 | 131 | 54 | 3 | 46 | 167 | 4 | 133 | 1.31e-37 | 128 |
MS.gene72173.t1 | AT1G10200 | 45.455 | 66 | 36 | 0 | 3 | 68 | 61 | 126 | 7.54e-15 | 69.3 |
Find 47 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATCCTATGCTGCTCTTGA+TGG | 0.220465 | 4.2:+6831360 | MS.gene72173:CDS |
ATTACCCGTCTGGGGTTTCT+TGG | 0.257758 | 4.2:-6830603 | None:intergenic |
AAACTTTCTGCTTTCTTCTC+AGG | 0.328680 | 4.2:+6830892 | MS.gene72173:CDS |
TTTACCACAAGTCATGCTTT+AGG | 0.384207 | 4.2:+6831307 | MS.gene72173:CDS |
CACAAGCCTTGCATTTCTGT+TGG | 0.387121 | 4.2:-6829974 | None:intergenic |
ACAAGCCTTGCATTTCTGTT+GGG | 0.412168 | 4.2:-6829973 | None:intergenic |
AAAGGATCTTATTACCCGTC+TGG | 0.436417 | 4.2:-6830613 | None:intergenic |
TCTGTCTCTGTGTCTGATGC+TGG | 0.438805 | 4.2:-6831516 | None:intergenic |
TCTCAGTTGTTTAAGGCAAA+AGG | 0.442224 | 4.2:+6831408 | MS.gene72173:CDS |
ACCCGTCTGGGGTTTCTTGG+AGG | 0.447284 | 4.2:-6830600 | None:intergenic |
AGAAAGCAGAAAGTTTGCTT+GGG | 0.452697 | 4.2:-6830885 | None:intergenic |
GAAAGTTTGCTTGGGGCCCT+AGG | 0.452962 | 4.2:-6830877 | None:intergenic |
AGCAGGAAAGCCTAGTGAAC+TGG | 0.468952 | 4.2:+6830744 | MS.gene72173:intron |
AACTTTCTGCTTTCTTCTCA+GGG | 0.473345 | 4.2:+6830893 | MS.gene72173:CDS |
TCAATAACCATGTCTTTCAC+TGG | 0.477166 | 4.2:+6829948 | None:intergenic |
CAAGAAAACTGTATATCCAT+TGG | 0.479463 | 4.2:+6830939 | MS.gene72173:CDS |
AAGAAAGCAGAAAGTTTGCT+TGG | 0.480734 | 4.2:-6830886 | None:intergenic |
AAGGATCTTATTACCCGTCT+GGG | 0.489662 | 4.2:-6830612 | None:intergenic |
AACTGTATATCCATTGGAAA+AGG | 0.494668 | 4.2:+6830945 | MS.gene72173:CDS |
TCAAGAGCAGCATAGGATGA+AGG | 0.519729 | 4.2:-6831357 | None:intergenic |
CTGGGGTTTCTTGGAGGCGA+AGG | 0.523891 | 4.2:-6830594 | None:intergenic |
CTTAAACAACTGAGAAAAGT+GGG | 0.527258 | 4.2:-6831400 | None:intergenic |
GAATCCATCAAGAGCAGCAT+AGG | 0.537698 | 4.2:-6831364 | None:intergenic |
GTTGATACGTTATCTGCTGA+TGG | 0.547689 | 4.2:+6830014 | MS.gene72173:CDS |
AGAATACACACCAGTTCACT+AGG | 0.547764 | 4.2:-6830754 | None:intergenic |
CCTTAAACAACTGAGAAAAG+TGG | 0.548044 | 4.2:-6831401 | None:intergenic |
TCATGCTTTAGGTGCACACA+TGG | 0.562402 | 4.2:+6831318 | MS.gene72173:CDS |
TACACCTCTTGTGTAACAGC+AGG | 0.567186 | 4.2:-6831558 | None:intergenic |
CAAGAGCAGCATAGGATGAA+GGG | 0.580724 | 4.2:-6831356 | None:intergenic |
TTGTGATAAAACTGTTCACT+TGG | 0.580761 | 4.2:+6829992 | MS.gene72173:CDS |
GCCTCCAAGAAACCCCAGAC+GGG | 0.596184 | 4.2:+6830599 | MS.gene72173:CDS |
TGATCCTGCTGTTACACAAG+AGG | 0.603788 | 4.2:+6831554 | MS.gene72173:CDS |
AGACACAGAGACAGAGACAA+AGG | 0.606794 | 4.2:+6831524 | MS.gene72173:CDS |
CGCCTCCAAGAAACCCCAGA+CGG | 0.608247 | 4.2:+6830598 | MS.gene72173:CDS |
AGTAACTATCAATCAATCGA+AGG | 0.610154 | 4.2:+6830527 | MS.gene72173:CDS |
TTCAGATGTAATCAATGCAA+TGG | 0.611041 | 4.2:+6830059 | MS.gene72173:CDS |
CGTATGTATATACCGCGAGA+AGG | 0.635292 | 4.2:-6830082 | None:intergenic |
TTATGACAGTTGACAGTGGA+AGG | 0.635630 | 4.2:+6831279 | MS.gene72173:intron |
AGGATCTTATTACCCGTCTG+GGG | 0.646532 | 4.2:-6830611 | None:intergenic |
GAAAGCAGAAAGTTTGCTTG+GGG | 0.651424 | 4.2:-6830884 | None:intergenic |
TGGAACCCAACAGAAATGCA+AGG | 0.666590 | 4.2:+6829968 | MS.gene72173:CDS |
TGCTTTAGGTGCACACATGG+AGG | 0.676247 | 4.2:+6831321 | MS.gene72173:CDS |
CTGTTTATGACAGTTGACAG+TGG | 0.680767 | 4.2:+6831275 | MS.gene72173:intron |
TTAAACAACTGAGAAAAGTG+GGG | 0.688189 | 4.2:-6831399 | None:intergenic |
TTGGGTTCCAGTGAAAGACA+TGG | 0.695332 | 4.2:-6829955 | None:intergenic |
TCAATGCAATGGCCTTCTCG+CGG | 0.702963 | 4.2:+6830070 | MS.gene72173:CDS |
TGCACCTAAAGCATGACTTG+TGG | 0.763367 | 4.2:-6831311 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTCCTATTATTATAATT+TGG | - | chr4.2:6830664-6830683 | None:intergenic | 10.0% |
!! | ATATATATATATATCAAAGA+TGG | + | chr4.2:6830171-6830190 | MS.gene72173:intron | 10.0% |
!! | TATATATATATATCAAAGAT+GGG | + | chr4.2:6830172-6830191 | MS.gene72173:intron | 10.0% |
!!! | TTATCTATGTTTAATTTTTT+TGG | + | chr4.2:6830310-6830329 | MS.gene72173:intron | 10.0% |
!! | AAGTATATAAAAAAAAGGAA+AGG | - | chr4.2:6830634-6830653 | None:intergenic | 15.0% |
!! | ATATATATGATCAGAAAAAA+GGG | - | chr4.2:6831060-6831079 | None:intergenic | 15.0% |
!! | ATCACTAATAATAACATAAA+TGG | + | chr4.2:6830484-6830503 | MS.gene72173:intron | 15.0% |
!! | CTATACCAAATTATAATAAT+AGG | + | chr4.2:6830656-6830675 | MS.gene72173:intron | 15.0% |
!! | TAGACAAGTATATAAAAAAA+AGG | - | chr4.2:6830639-6830658 | None:intergenic | 15.0% |
!! | TATATATATGATCAGAAAAA+AGG | - | chr4.2:6831061-6831080 | None:intergenic | 15.0% |
!!! | ATTTTTACAAGTAAAAGTTT+AGG | - | chr4.2:6830443-6830462 | None:intergenic | 15.0% |
!! | ATATATATAGAACATAAACG+AGG | - | chr4.2:6830157-6830176 | None:intergenic | 20.0% |
!! | TATATATAGAACATAAACGA+GGG | - | chr4.2:6830156-6830175 | None:intergenic | 20.0% |
!! | TTATGAAACACAAAATGATA+GGG | + | chr4.2:6830225-6830244 | MS.gene72173:intron | 20.0% |
!! | TTTATGAAACACAAAATGAT+AGG | + | chr4.2:6830224-6830243 | MS.gene72173:intron | 20.0% |
!!! | ATATAGTTCTATTGTTTTAG+TGG | - | chr4.2:6831004-6831023 | None:intergenic | 20.0% |
!!! | ATTGGAAAAGGTATATATTT+GGG | + | chr4.2:6830957-6830976 | MS.gene72173:intron | 20.0% |
! | ACCATATAGCAAAAACAAAT+TGG | - | chr4.2:6830133-6830152 | None:intergenic | 25.0% |
! | ACTATATAATCAAACAATGC+TGG | + | chr4.2:6831017-6831036 | MS.gene72173:intron | 25.0% |
!! | CAAATATATACCTTTTCCAA+TGG | - | chr4.2:6830958-6830977 | None:intergenic | 25.0% |
!! | CATTGGAAAAGGTATATATT+TGG | + | chr4.2:6830956-6830975 | MS.gene72173:intron | 25.0% |
!!! | ACCAATTTGTTTTTGCTATA+TGG | + | chr4.2:6830129-6830148 | MS.gene72173:intron | 25.0% |
!!! | ACGTATCTTAATTTGTTTTC+TGG | + | chr4.2:6830102-6830121 | MS.gene72173:intron | 25.0% |
AACTGTATATCCATTGGAAA+AGG | + | chr4.2:6830945-6830964 | MS.gene72173:CDS | 30.0% | |
AGTAACTATCAATCAATCGA+AGG | + | chr4.2:6830527-6830546 | MS.gene72173:CDS | 30.0% | |
CAAGAAAACTGTATATCCAT+TGG | + | chr4.2:6830939-6830958 | MS.gene72173:CDS | 30.0% | |
CTTAAACAACTGAGAAAAGT+GGG | - | chr4.2:6831403-6831422 | None:intergenic | 30.0% | |
GTATAAAATGTCACAATGTC+TGG | + | chr4.2:6831202-6831221 | MS.gene72173:intron | 30.0% | |
TATATATACTCCAACAATGC+TGG | + | chr4.2:6831073-6831092 | MS.gene72173:intron | 30.0% | |
TGCATAATCATAAACGACAT+GGG | + | chr4.2:6830372-6830391 | MS.gene72173:intron | 30.0% | |
TTAAACAACTGAGAAAAGTG+GGG | - | chr4.2:6831402-6831421 | None:intergenic | 30.0% | |
TTCAGATGTAATCAATGCAA+TGG | + | chr4.2:6830059-6830078 | MS.gene72173:CDS | 30.0% | |
TTGCATAATCATAAACGACA+TGG | + | chr4.2:6830371-6830390 | MS.gene72173:intron | 30.0% | |
TTGTGATAAAACTGTTCACT+TGG | + | chr4.2:6829992-6830011 | MS.gene72173:CDS | 30.0% | |
TTTCATATGTTTACAGCCTA+GGG | + | chr4.2:6830861-6830880 | MS.gene72173:intron | 30.0% | |
! | GACAGTATAAGTACTTTTCT+AGG | + | chr4.2:6830400-6830419 | MS.gene72173:intron | 30.0% |
! | TTTAGGTGAGTTGAATATGT+TGG | - | chr4.2:6830426-6830445 | None:intergenic | 30.0% |
! | TTTCATGATTTTCAAACAGC+AGG | + | chr4.2:6830727-6830746 | MS.gene72173:intron | 30.0% |
!!! | AGGAATTTATGTGCTGTTTT+TGG | + | chr4.2:6830676-6830695 | MS.gene72173:intron | 30.0% |
!!! | GAATTTATGTGCTGTTTTTG+GGG | + | chr4.2:6830678-6830697 | MS.gene72173:intron | 30.0% |
!!! | GGAATTTATGTGCTGTTTTT+GGG | + | chr4.2:6830677-6830696 | MS.gene72173:intron | 30.0% |
AAACTTTCTGCTTTCTTCTC+AGG | + | chr4.2:6830892-6830911 | MS.gene72173:CDS | 35.0% | |
AACTTTCTGCTTTCTTCTCA+GGG | + | chr4.2:6830893-6830912 | MS.gene72173:CDS | 35.0% | |
ATGGGTCAAATTGCATCTAA+AGG | + | chr4.2:6830190-6830209 | MS.gene72173:intron | 35.0% | |
CCTTAAACAACTGAGAAAAG+TGG | - | chr4.2:6831404-6831423 | None:intergenic | 35.0% | |
CTTTCATATGTTTACAGCCT+AGG | + | chr4.2:6830860-6830879 | MS.gene72173:intron | 35.0% | |
GGAAACGGGTGTATTATATA+CGG | - | chr4.2:6831134-6831153 | None:intergenic | 35.0% | |
GTATATAATACACCCGTTTC+CGG | + | chr4.2:6831133-6831152 | MS.gene72173:intron | 35.0% | |
TAATCTAAACACACCGGAAA+CGG | - | chr4.2:6831149-6831168 | None:intergenic | 35.0% | |
TACTCTCGATGATCTTAAGA+AGG | + | chr4.2:6830345-6830364 | MS.gene72173:intron | 35.0% | |
TCCTCATAATCTAAACACAC+CGG | - | chr4.2:6831155-6831174 | None:intergenic | 35.0% | |
TTTACCACAAGTCATGCTTT+AGG | + | chr4.2:6831307-6831326 | MS.gene72173:CDS | 35.0% | |
! | AAGAAAGCAGAAAGTTTGCT+TGG | - | chr4.2:6830889-6830908 | None:intergenic | 35.0% |
! | AGAAAGCAGAAAGTTTGCTT+GGG | - | chr4.2:6830888-6830907 | None:intergenic | 35.0% |
! | TCTCAGTTGTTTAAGGCAAA+AGG | + | chr4.2:6831408-6831427 | MS.gene72173:CDS | 35.0% |
!! | CCACTTTTCTCAGTTGTTTA+AGG | + | chr4.2:6831401-6831420 | MS.gene72173:CDS | 35.0% |
AAAGGATCTTATTACCCGTC+TGG | - | chr4.2:6830616-6830635 | None:intergenic | 40.0% | |
AAGGATCTTATTACCCGTCT+GGG | - | chr4.2:6830615-6830634 | None:intergenic | 40.0% | |
AATCTAAACACACCGGAAAC+GGG | - | chr4.2:6831148-6831167 | None:intergenic | 40.0% | |
ACAAGCCTTGCATTTCTGTT+GGG | - | chr4.2:6829976-6829995 | None:intergenic | 40.0% | |
AGAATACACACCAGTTCACT+AGG | - | chr4.2:6830757-6830776 | None:intergenic | 40.0% | |
CTGTTTATGACAGTTGACAG+TGG | + | chr4.2:6831275-6831294 | MS.gene72173:intron | 40.0% | |
GTTGATACGTTATCTGCTGA+TGG | + | chr4.2:6830014-6830033 | MS.gene72173:CDS | 40.0% | |
TACTCCAACAATGCTGGATT+TGG | + | chr4.2:6831079-6831098 | MS.gene72173:intron | 40.0% | |
TCCGGTGTGTTTAGATTATG+AGG | + | chr4.2:6831151-6831170 | MS.gene72173:intron | 40.0% | |
TTATGACAGTTGACAGTGGA+AGG | + | chr4.2:6831279-6831298 | MS.gene72173:intron | 40.0% | |
! | GAAAGCAGAAAGTTTGCTTG+GGG | - | chr4.2:6830887-6830906 | None:intergenic | 40.0% |
AAAAGGGCCCACTGAAATCA+TGG | - | chr4.2:6831044-6831063 | None:intergenic | 45.0% | |
AGACACAGAGACAGAGACAA+AGG | + | chr4.2:6831524-6831543 | MS.gene72173:CDS | 45.0% | |
AGGATCTTATTACCCGTCTG+GGG | - | chr4.2:6830614-6830633 | None:intergenic | 45.0% | |
ATGCTGGACCATGATTTCAG+TGG | + | chr4.2:6831033-6831052 | MS.gene72173:intron | 45.0% | |
CAAGAGCAGCATAGGATGAA+GGG | - | chr4.2:6831359-6831378 | None:intergenic | 45.0% | |
CACAAGCCTTGCATTTCTGT+TGG | - | chr4.2:6829977-6829996 | None:intergenic | 45.0% | |
CGTATGTATATACCGCGAGA+AGG | - | chr4.2:6830085-6830104 | None:intergenic | 45.0% | |
GAATCCATCAAGAGCAGCAT+AGG | - | chr4.2:6831367-6831386 | None:intergenic | 45.0% | |
GTGTCCAAATCCAGCATTGT+TGG | - | chr4.2:6831086-6831105 | None:intergenic | 45.0% | |
TACACCTCTTGTGTAACAGC+AGG | - | chr4.2:6831561-6831580 | None:intergenic | 45.0% | |
TCAAGAGCAGCATAGGATGA+AGG | - | chr4.2:6831360-6831379 | None:intergenic | 45.0% | |
TCATCCTATGCTGCTCTTGA+TGG | + | chr4.2:6831360-6831379 | MS.gene72173:CDS | 45.0% | |
TGATCCTGCTGTTACACAAG+AGG | + | chr4.2:6831554-6831573 | MS.gene72173:CDS | 45.0% | |
TGCACCTAAAGCATGACTTG+TGG | - | chr4.2:6831314-6831333 | None:intergenic | 45.0% | |
TGCTGGACCATGATTTCAGT+GGG | + | chr4.2:6831034-6831053 | MS.gene72173:intron | 45.0% | |
TGGAACCCAACAGAAATGCA+AGG | + | chr4.2:6829968-6829987 | MS.gene72173:CDS | 45.0% | |
! | TCATGCTTTAGGTGCACACA+TGG | + | chr4.2:6831318-6831337 | MS.gene72173:CDS | 45.0% |
AGCAGGAAAGCCTAGTGAAC+TGG | + | chr4.2:6830744-6830763 | MS.gene72173:intron | 50.0% | |
TCAATGCAATGGCCTTCTCG+CGG | + | chr4.2:6830070-6830089 | MS.gene72173:CDS | 50.0% | |
TCTGTCTCTGTGTCTGATGC+TGG | - | chr4.2:6831519-6831538 | None:intergenic | 50.0% | |
! | ATTACCCGTCTGGGGTTTCT+TGG | - | chr4.2:6830606-6830625 | None:intergenic | 50.0% |
! | TCACGCTGAGCAGCTTTTCA+AGG | + | chr4.2:6830568-6830587 | MS.gene72173:CDS | 50.0% |
! | TGCTTTAGGTGCACACATGG+AGG | + | chr4.2:6831321-6831340 | MS.gene72173:CDS | 50.0% |
! | GAAAGTTTGCTTGGGGCCCT+AGG | - | chr4.2:6830880-6830899 | None:intergenic | 55.0% |
CGCCTCCAAGAAACCCCAGA+CGG | + | chr4.2:6830598-6830617 | MS.gene72173:CDS | 60.0% | |
CTGGGGTTTCTTGGAGGCGA+AGG | - | chr4.2:6830597-6830616 | None:intergenic | 60.0% | |
GCCTCCAAGAAACCCCAGAC+GGG | + | chr4.2:6830599-6830618 | MS.gene72173:CDS | 60.0% | |
! | ACCCGTCTGGGGTTTCTTGG+AGG | - | chr4.2:6830603-6830622 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 6829957 | 6831581 | 6829957 | ID=MS.gene72173 |
chr4.2 | mRNA | 6829957 | 6831581 | 6829957 | ID=MS.gene72173.t1;Parent=MS.gene72173 |
chr4.2 | exon | 6829957 | 6830091 | 6829957 | ID=MS.gene72173.t1.exon1;Parent=MS.gene72173.t1 |
chr4.2 | CDS | 6829957 | 6830091 | 6829957 | ID=cds.MS.gene72173.t1;Parent=MS.gene72173.t1 |
chr4.2 | exon | 6830524 | 6830620 | 6830524 | ID=MS.gene72173.t1.exon2;Parent=MS.gene72173.t1 |
chr4.2 | CDS | 6830524 | 6830620 | 6830524 | ID=cds.MS.gene72173.t1;Parent=MS.gene72173.t1 |
chr4.2 | exon | 6830746 | 6830765 | 6830746 | ID=MS.gene72173.t1.exon3;Parent=MS.gene72173.t1 |
chr4.2 | CDS | 6830746 | 6830765 | 6830746 | ID=cds.MS.gene72173.t1;Parent=MS.gene72173.t1 |
chr4.2 | exon | 6830877 | 6830966 | 6830877 | ID=MS.gene72173.t1.exon4;Parent=MS.gene72173.t1 |
chr4.2 | CDS | 6830877 | 6830966 | 6830877 | ID=cds.MS.gene72173.t1;Parent=MS.gene72173.t1 |
chr4.2 | exon | 6831288 | 6831581 | 6831288 | ID=MS.gene72173.t1.exon5;Parent=MS.gene72173.t1 |
chr4.2 | CDS | 6831288 | 6831581 | 6831288 | ID=cds.MS.gene72173.t1;Parent=MS.gene72173.t1 |
Gene Sequence |
Protein sequence |