AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72260.t1 MTR_1g046200 95.370 108 5 0 1 108 1 108 7.05e-69 217
MS.gene72260.t1 MTR_1g046200 91.139 79 7 0 217 295 246 324 4.85e-45 155
MS.gene72260.t1 MTR_1g046320 80.952 105 20 0 2 106 5 109 3.44e-55 182
MS.gene72260.t1 MTR_1g046320 66.667 87 29 0 208 294 247 333 6.99e-36 131
MS.gene72260.t1 MTR_1g046340 72.897 107 29 0 2 108 5 111 1.17e-50 170
MS.gene72260.t1 MTR_1g046340 70.886 79 23 0 217 295 257 335 1.15e-33 125
MS.gene72260.t1 MTR_3g088515 54.913 173 46 3 2 142 16 188 1.74e-47 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72260.t1 AT3G18960 37.624 101 59 3 8 107 30 127 1.63e-11 62.8
MS.gene72260.t1 AT5G18000 37.168 113 67 4 3 112 15 126 3.26e-11 63.2
MS.gene72260.t1 AT3G18960 37.624 101 59 3 8 107 30 127 3.30e-11 62.0

Find 42 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGAAGTGTGGATTTC+CGG 0.187944 1.1:+29203579 None:intergenic
AAATCCTTGATAACATTCTT+TGG 0.259575 1.1:+29203249 None:intergenic
TGTTAAGGGTGCACATTGTT+AGG 0.310846 1.1:-29202846 MS.gene72260:CDS
CTTACCAGCTTTGCACTTGC+AGG 0.327904 1.1:+29203778 None:intergenic
AAGAATTGTACCAATTCATT+AGG 0.342988 1.1:+29203538 None:intergenic
TAGAGACGAAAATTCTTTAG+AGG 0.344242 1.1:-29204140 MS.gene72260:CDS
CGAGAATGAAAGAATGTATA+AGG 0.350460 1.1:-29203834 MS.gene72260:CDS
ATCAAGTTCACAAAAGCATT+AGG 0.355825 1.1:+29204283 None:intergenic
TGAACTTGATGCGTTCAAAA+AGG 0.358189 1.1:-29204270 MS.gene72260:CDS
CTCTTCCTCTACGATCTCTT+AGG 0.378241 1.1:+29204227 None:intergenic
TTGTACCAATTCATTAGGTC+TGG 0.410085 1.1:+29203543 None:intergenic
GCAATGAAGTGTGGATTTCC+GGG 0.417877 1.1:+29203580 None:intergenic
ATATGTGTTGTGCTTATTTG+TGG 0.421461 1.1:+29203012 None:intergenic
ATATTGAAAATAACATATTC+AGG 0.423216 1.1:-29204093 MS.gene72260:CDS
TCAAGTTCACAAAAGCATTA+GGG 0.428525 1.1:+29204284 None:intergenic
TTGAATGTTGCCACTGCAAA+AGG 0.428673 1.1:-29203197 MS.gene72260:CDS
TCATTCCAGACCTAATGAAT+TGG 0.430343 1.1:-29203548 MS.gene72260:intron
CATCTCTCCACGTACGTACT+TGG 0.449196 1.1:+29202977 None:intergenic
CATGTCAAAGCTCGTCGTAT+TGG 0.455772 1.1:-29204199 MS.gene72260:CDS
TATTCCAAAGAATGTTATCA+AGG 0.458986 1.1:-29203253 MS.gene72260:CDS
GATGGTCGAGTACGTGTGCT+AGG 0.481978 1.1:-29202958 MS.gene72260:CDS
TTGTGGCAAGATGTGATGAT+AGG 0.486090 1.1:+29203029 None:intergenic
GAGATCGTAGAGGAAGAGAT+TGG 0.486399 1.1:-29204222 MS.gene72260:CDS
GAAGAAATCTGGGTAATCCT+TGG 0.489215 1.1:+29205088 None:intergenic
GTCGAGTACGTGTGCTAGGG+TGG 0.503803 1.1:-29202954 MS.gene72260:CDS
AGAACCTGCAAGTGCAAAGC+TGG 0.504053 1.1:-29203782 MS.gene72260:intron
AGAAAAGCACACTGAAAGAA+TGG 0.515189 1.1:-29205051 MS.gene72260:intron
ATCAATGTGTGAAAAGAAGA+AGG 0.520397 1.1:-29204050 MS.gene72260:intron
TTTGCAGTGGCAACATTCAA+GGG 0.546514 1.1:+29203200 None:intergenic
AAGGGTGCACATTGTTAGGA+AGG 0.552584 1.1:-29202842 MS.gene72260:CDS
AGACGAAAATTCTTTAGAGG+AGG 0.570120 1.1:-29204137 MS.gene72260:CDS
GAGATTGTGCTGCGTGAAGA+TGG 0.578226 1.1:-29202880 MS.gene72260:CDS
CAAGTACGTACGTGGAGAGA+TGG 0.582116 1.1:-29202976 MS.gene72260:CDS
CATCATGATACCGATGATGA+TGG 0.600687 1.1:-29203866 MS.gene72260:CDS
AATTGTAACTAAGATGGCCA+AGG 0.605912 1.1:-29205105 None:intergenic
GTCGTCATCACCATCATCAT+CGG 0.606956 1.1:+29203856 None:intergenic
ATGGTCGAGTACGTGTGCTA+GGG 0.616130 1.1:-29202957 MS.gene72260:CDS
TCGAGTACGTGTGCTAGGGT+GGG 0.622095 1.1:-29202953 MS.gene72260:CDS
AGAGAGGCCAAGTACGTACG+TGG 0.642453 1.1:-29202984 MS.gene72260:CDS
GCTGAAATGTATATTCAACC+CGG 0.655563 1.1:-29203598 MS.gene72260:CDS
ACAACACATATCGAAAAGAG+AGG 0.679363 1.1:-29203000 MS.gene72260:CDS
TTCATCCTAAGAGATCGTAG+AGG 0.754677 1.1:-29204232 MS.gene72260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATTATTCAATG+CGG - chr1.1:29203334-29203353 MS.gene72260:intron 10.0%
!! AATTATCAAACAAAATAACA+TGG + chr1.1:29203177-29203196 None:intergenic 15.0%
!! ATATTGAAAATAACATATTC+AGG - chr1.1:29203836-29203855 MS.gene72260:CDS 15.0%
!! TAAAAAAAATTATTCAATGC+GGG - chr1.1:29203335-29203354 MS.gene72260:intron 15.0%
!!! TTTTTTATTCCTTTTTGATT+AGG - chr1.1:29202942-29202961 MS.gene72260:CDS 15.0%
!! AAAAAAAATTATTCAATGCG+GGG - chr1.1:29203336-29203355 MS.gene72260:intron 20.0%
!! AAACTACCATTGATATTTAA+AGG - chr1.1:29203209-29203228 MS.gene72260:CDS 20.0%
!! CAAAAAGGAATAAAAAACAT+TGG + chr1.1:29202939-29202958 None:intergenic 20.0%
!! CATGTCAAAAAAAAAAGTAA+TGG + chr1.1:29204422-29204441 None:intergenic 20.0%
!! TCATAATAGTGAAAAATGAA+AGG + chr1.1:29204780-29204799 None:intergenic 20.0%
!! TTTCAATATGTGTAAAAACA+AGG + chr1.1:29203825-29203844 None:intergenic 20.0%
!!! AAAAAACTTTGAAGAAATCT+GGG + chr1.1:29202854-29202873 None:intergenic 20.0%
!!! ATTAAGTAGTTTTCTTCATT+CGG + chr1.1:29203145-29203164 None:intergenic 20.0%
!!! ATTTACCTGATGATTTATTT+TGG - chr1.1:29204250-29204269 MS.gene72260:CDS 20.0%
!!! ATTTTTGATAAAAACCAGTT+TGG - chr1.1:29203520-29203539 MS.gene72260:intron 20.0%
!!! CATTACTTTTTTTTTTGACA+TGG - chr1.1:29204420-29204439 MS.gene72260:intron 20.0%
! AAGAATTGTACCAATTCATT+AGG + chr1.1:29204394-29204413 None:intergenic 25.0%
! ATCAACACATTAAACAAAAG+TGG + chr1.1:29204811-29204830 None:intergenic 25.0%
! ATGGAAAAATCGAAATGTTA+AGG - chr1.1:29205068-29205087 MS.gene72260:CDS 25.0%
! CTAAACCAAAATAAATCATC+AGG + chr1.1:29204258-29204277 None:intergenic 25.0%
! GAAAAATGAAAGGTAAAGAT+TGG + chr1.1:29204770-29204789 None:intergenic 25.0%
! TAATAAAGAGAATAACTAGC+AGG + chr1.1:29204558-29204577 None:intergenic 25.0%
! TATTCCAAAGAATGTTATCA+AGG - chr1.1:29204676-29204695 MS.gene72260:intron 25.0%
! TGGAAAAATCGAAATGTTAA+GGG - chr1.1:29205069-29205088 MS.gene72260:CDS 25.0%
!! AAATCCTTGATAACATTCTT+TGG + chr1.1:29204683-29204702 None:intergenic 25.0%
!! ATATATTTTGCAATGAAGTG+TGG + chr1.1:29204361-29204380 None:intergenic 25.0%
!! CAATGGTAGTTTTTATAACA+CGG + chr1.1:29203201-29203220 None:intergenic 25.0%
!! CATTTTTCACTATTATGAAG+TGG - chr1.1:29204782-29204801 MS.gene72260:intron 25.0%
!! GAAAAAACTTTGAAGAAATC+TGG + chr1.1:29202855-29202874 None:intergenic 25.0%
!! GTTTTTATCAAAAATACGCA+TGG + chr1.1:29203515-29203534 None:intergenic 25.0%
!! TTAAGTAGTTTTCTTCATTC+GGG + chr1.1:29203144-29203163 None:intergenic 25.0%
!!! GATGATTTATTTTGGTTTAG+CGG - chr1.1:29204258-29204277 MS.gene72260:CDS 25.0%
AAAAAACATTGGAGAAAGCA+TGG + chr1.1:29202928-29202947 None:intergenic 30.0%
AAATAACATTATGGAGGATG+AGG - chr1.1:29203918-29203937 MS.gene72260:intron 30.0%
AAATATATGAGAATCGGGTA+TGG - chr1.1:29203449-29203468 MS.gene72260:intron 30.0%
AATATATGAGAATCGGGTAT+GGG - chr1.1:29203450-29203469 MS.gene72260:intron 30.0%
ACGGGTAAATATATGAGAAT+CGG - chr1.1:29203443-29203462 MS.gene72260:intron 30.0%
ATATGTGTTGTGCTTATTTG+TGG + chr1.1:29204920-29204939 None:intergenic 30.0%
ATCAATGTGTGAAAAGAAGA+AGG - chr1.1:29203879-29203898 MS.gene72260:intron 30.0%
ATGCGTTTCAATATTTCTCT+AGG - chr1.1:29203285-29203304 MS.gene72260:intron 30.0%
CGAGAATGAAAGAATGTATA+AGG - chr1.1:29204095-29204114 MS.gene72260:CDS 30.0%
GTTGCTCCTTTAAATATCAA+TGG + chr1.1:29203218-29203237 None:intergenic 30.0%
TAGAGACGAAAATTCTTTAG+AGG - chr1.1:29203789-29203808 MS.gene72260:CDS 30.0%
TATTTCTTTGCATACCAAAC+TGG + chr1.1:29203537-29203556 None:intergenic 30.0%
TGCGTTTCAATATTTCTCTA+GGG - chr1.1:29203286-29203305 MS.gene72260:intron 30.0%
TGTTAAAGTGAACACATTGT+TGG - chr1.1:29203259-29203278 MS.gene72260:intron 30.0%
TTCAAAAAGGAAGGTCATAA+AGG - chr1.1:29203672-29203691 MS.gene72260:intron 30.0%
! TTATACTATACCTTTTGCAG+TGG + chr1.1:29204745-29204764 None:intergenic 30.0%
! TTTTCCCCGATTTCAAAAAA+CGG - chr1.1:29203061-29203080 MS.gene72260:intron 30.0%
!! ATCAAGTTCACAAAAGCATT+AGG + chr1.1:29203649-29203668 None:intergenic 30.0%
!! TATTCCTTTTTGATTAGGCA+TGG - chr1.1:29202947-29202966 MS.gene72260:CDS 30.0%
!! TCAAGTTCACAAAAGCATTA+GGG + chr1.1:29203648-29203667 None:intergenic 30.0%
!!! AAGTTGCATTCATCCTTTTT+TGG - chr1.1:29204843-29204862 MS.gene72260:intron 30.0%
AAAATTATTCAATGCGGGGA+CGG - chr1.1:29203340-29203359 MS.gene72260:intron 35.0%
ACAACACATATCGAAAAGAG+AGG - chr1.1:29204929-29204948 MS.gene72260:intron 35.0%
ACTTCAAATGTGAAGAGTGA+TGG + chr1.1:29204655-29204674 None:intergenic 35.0%
ATATATGAGAATCGGGTATG+GGG - chr1.1:29203451-29203470 MS.gene72260:intron 35.0%
ATCAAAAATACGCATGGCAA+TGG + chr1.1:29203509-29203528 None:intergenic 35.0%
CGATTTCAAAAAACGGGTAT+GGG - chr1.1:29203068-29203087 MS.gene72260:intron 35.0%
CGGGTAAATATATGAGAATC+GGG - chr1.1:29203444-29203463 MS.gene72260:intron 35.0%
CGTGGAGGAAAATAACATTA+TGG - chr1.1:29203909-29203928 MS.gene72260:intron 35.0%
GATAAGAAATGACAAGTCGA+AGG + chr1.1:29204514-29204533 None:intergenic 35.0%
GCGTTTCAATATTTCTCTAG+GGG - chr1.1:29203287-29203306 MS.gene72260:intron 35.0%
GCTGAAATGTATATTCAACC+CGG - chr1.1:29204331-29204350 MS.gene72260:intron 35.0%
GGAGGAAAATAACATTATGG+AGG - chr1.1:29203912-29203931 MS.gene72260:intron 35.0%
TCAAAAATACGCATGGCAAT+GGG + chr1.1:29203508-29203527 None:intergenic 35.0%
TCATTCCAGACCTAATGAAT+TGG - chr1.1:29204381-29204400 MS.gene72260:intron 35.0%
TGAACTTGATGCGTTCAAAA+AGG - chr1.1:29203659-29203678 MS.gene72260:intron 35.0%
TGTCCTGTCATAACCAAAAA+AGG + chr1.1:29204859-29204878 None:intergenic 35.0%
TTGTACCAATTCATTAGGTC+TGG + chr1.1:29204389-29204408 None:intergenic 35.0%
TTTCCCCGATTTCAAAAAAC+GGG - chr1.1:29203062-29203081 MS.gene72260:intron 35.0%
! AGAAAAGCACACTGAAAGAA+TGG - chr1.1:29202878-29202897 MS.gene72260:CDS 35.0%
! AGACGAAAATTCTTTAGAGG+AGG - chr1.1:29203792-29203811 MS.gene72260:CDS 35.0%
! TGATGATGATATTATGGCAG+AGG - chr1.1:29204035-29204054 MS.gene72260:intron 35.0%
! TGCTGCTGATGATGATATTA+TGG - chr1.1:29204029-29204048 MS.gene72260:intron 35.0%
!!! AGCTTTATTTTGACGATGGT+TGG - chr1.1:29203758-29203777 MS.gene72260:intron 35.0%
!!! ATACCCGTTTTTTGAAATCG+GGG + chr1.1:29203068-29203087 None:intergenic 35.0%
!!! ATTTTGGTTTAGCGGACATT+GGG - chr1.1:29204266-29204285 MS.gene72260:CDS 35.0%
!!! CATACCCGTTTTTTGAAATC+GGG + chr1.1:29203069-29203088 None:intergenic 35.0%
!!! CATCCTTTTTTGGTTATGAC+AGG - chr1.1:29204853-29204872 MS.gene72260:intron 35.0%
!!! CCATACCCGTTTTTTGAAAT+CGG + chr1.1:29203070-29203089 None:intergenic 35.0%
!!! GATGAGCTTTATTTTGACGA+TGG - chr1.1:29203754-29203773 MS.gene72260:intron 35.0%
!!! TATTTTGGTTTAGCGGACAT+TGG - chr1.1:29204265-29204284 MS.gene72260:CDS 35.0%
AAAACCCGTCAAATTGGGTT+TGG + chr1.1:29203007-29203026 None:intergenic 40.0%
AAAGAAGAAGGTAAGTGACG+TGG - chr1.1:29203891-29203910 MS.gene72260:intron 40.0%
AAATTATTCAATGCGGGGAC+GGG - chr1.1:29203341-29203360 MS.gene72260:intron 40.0%
ATACCCAAACCCAGTCAAAA+CGG + chr1.1:29203032-29203051 None:intergenic 40.0%
ATTTGCTTAACCCTAGGTAG+AGG - chr1.1:29204470-29204489 MS.gene72260:intron 40.0%
CAAAAATACGCATGGCAATG+GGG + chr1.1:29203507-29203526 None:intergenic 40.0%
CATCATGATACCGATGATGA+TGG - chr1.1:29204063-29204082 MS.gene72260:CDS 40.0%
CCGATTTCAAAAAACGGGTA+TGG - chr1.1:29203067-29203086 MS.gene72260:intron 40.0%
CTTGATGCGTTCAAAAAGGA+AGG - chr1.1:29203663-29203682 MS.gene72260:intron 40.0%
GAAGAAATCTGGGTAATCCT+TGG + chr1.1:29202844-29202863 None:intergenic 40.0%
GTTACCTTACCCATATCCAA+CGG + chr1.1:29203425-29203444 None:intergenic 40.0%
GTTGCCATGCCTAATCAAAA+AGG + chr1.1:29202954-29202973 None:intergenic 40.0%
GTTGGATATGGGTAAGGTAA+CGG - chr1.1:29203424-29203443 MS.gene72260:intron 40.0%
TAGTCCATTTGCTTAACCCT+AGG - chr1.1:29204464-29204483 MS.gene72260:intron 40.0%
TCTACCTAGGGTTAAGCAAA+TGG + chr1.1:29204471-29204490 None:intergenic 40.0%
TGCAATGAAGTGTGGATTTC+CGG + chr1.1:29204353-29204372 None:intergenic 40.0%
TTACCTTACCCATATCCAAC+GGG + chr1.1:29203424-29203443 None:intergenic 40.0%
TTCAAAAAACGGGTATGGGA+CGG - chr1.1:29203072-29203091 MS.gene72260:intron 40.0%
TTCATCCTAAGAGATCGTAG+AGG - chr1.1:29203697-29203716 MS.gene72260:intron 40.0%
TTGAATGTTGCCACTGCAAA+AGG - chr1.1:29204732-29204751 MS.gene72260:intron 40.0%
TTGGATATGGGTAAGGTAAC+GGG - chr1.1:29203425-29203444 MS.gene72260:intron 40.0%
TTGTGGCAAGATGTGATGAT+AGG + chr1.1:29204903-29204922 None:intergenic 40.0%
TTTCAATTTCTCATCCCCGT+TGG - chr1.1:29203406-29203425 MS.gene72260:intron 40.0%
TTTGCAGTGGCAACATTCAA+GGG + chr1.1:29204732-29204751 None:intergenic 40.0%
! GATGATGATGATGACGATGA+TGG - chr1.1:29203958-29203977 MS.gene72260:intron 40.0%
! GATGGTGATGATGATGATGA+CGG - chr1.1:29203952-29203971 MS.gene72260:intron 40.0%
! GTAGTTTTCTTCATTCGGGA+CGG + chr1.1:29203140-29203159 None:intergenic 40.0%
! TAGTTTTCTTCATTCGGGAC+GGG + chr1.1:29203139-29203158 None:intergenic 40.0%
! TGACATGTTTTGTGAAGCAG+AGG + chr1.1:29204709-29204728 None:intergenic 40.0%
! TGTTAAGGGTGCACATTGTT+AGG - chr1.1:29205083-29205102 MS.gene72260:CDS 40.0%
! TTTTGCAGTGGCAACATTCA+AGG + chr1.1:29204733-29204752 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG - chr1.1:29203032-29203051 MS.gene72260:CDS 40.0%
AATTATTCAATGCGGGGACG+GGG - chr1.1:29203342-29203361 MS.gene72260:intron 45.0%
CATGTCAAAGCTCGTCGTAT+TGG - chr1.1:29203730-29203749 MS.gene72260:intron 45.0%
CATTATGGAGGATGAGGAAG+AGG - chr1.1:29203924-29203943 MS.gene72260:intron 45.0%
CCGAACCAAACCCAATTTGA+CGG - chr1.1:29202999-29203018 MS.gene72260:CDS 45.0%
CGAACCAAACCCAATTTGAC+GGG - chr1.1:29203000-29203019 MS.gene72260:CDS 45.0%
CTAGCAGGCATAGAGTACAA+AGG + chr1.1:29204543-29204562 None:intergenic 45.0%
CTCTTCCTCTACGATCTCTT+AGG + chr1.1:29203705-29203724 None:intergenic 45.0%
GAGATCGTAGAGGAAGAGAT+TGG - chr1.1:29203707-29203726 MS.gene72260:intron 45.0%
GCAATGAAGTGTGGATTTCC+GGG + chr1.1:29204352-29204371 None:intergenic 45.0%
GTCGTCATCACCATCATCAT+CGG + chr1.1:29204076-29204095 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG + chr1.1:29203031-29203050 None:intergenic 45.0%
TACCTTACCCATATCCAACG+GGG + chr1.1:29203423-29203442 None:intergenic 45.0%
TCAAAAAACGGGTATGGGAC+GGG - chr1.1:29203073-29203092 MS.gene72260:intron 45.0%
TCGACTAACTCCTCTACCTA+GGG + chr1.1:29204483-29204502 None:intergenic 45.0%
TTCGACTAACTCCTCTACCT+AGG + chr1.1:29204484-29204503 None:intergenic 45.0%
TTCTCATCCCCGTTGGATAT+GGG - chr1.1:29203413-29203432 MS.gene72260:intron 45.0%
TTTCTCATCCCCGTTGGATA+TGG - chr1.1:29203412-29203431 MS.gene72260:intron 45.0%
! AAGGGTGCACATTGTTAGGA+AGG - chr1.1:29205087-29205106 MS.gene72260:CDS 45.0%
! CCGTCAAATTGGGTTTGGTT+CGG + chr1.1:29203002-29203021 None:intergenic 45.0%
! CGTCAAATTGGGTTTGGTTC+GGG + chr1.1:29203001-29203020 None:intergenic 45.0%
!! AAATTGGGTTTGGTTCGGGT+GGG + chr1.1:29202997-29203016 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG - chr1.1:29203031-29203050 MS.gene72260:CDS 45.0%
AAATACGCATGGCAATGGGG+CGG + chr1.1:29203504-29203523 None:intergenic 50.0%
ACCCAAACCCAGTCAAAACG+GGG + chr1.1:29203030-29203049 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG + chr1.1:29203013-29203032 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTT+TGG - chr1.1:29203037-29203056 MS.gene72260:CDS 50.0%
AGAACCTGCAAGTGCAAAGC+TGG - chr1.1:29204147-29204166 MS.gene72260:CDS 50.0%
ATCCCCGTTGGATATGGGTA+AGG - chr1.1:29203418-29203437 MS.gene72260:intron 50.0%
ATGAGAATCGGGTATGGGGA+TGG - chr1.1:29203455-29203474 MS.gene72260:intron 50.0%
ATGGTCGAGTACGTGTGCTA+GGG - chr1.1:29204972-29204991 MS.gene72260:intron 50.0%
CAAGTACGTACGTGGAGAGA+TGG - chr1.1:29204953-29204972 MS.gene72260:intron 50.0%
CATCTCTCCACGTACGTACT+TGG + chr1.1:29204955-29204974 None:intergenic 50.0%
CGGGGAAAACCCGTCAAATT+GGG + chr1.1:29203012-29203031 None:intergenic 50.0%
CTGGGTTTGGGTATGGGTTT+GGG - chr1.1:29203038-29203057 MS.gene72260:CDS 50.0%
CTTACCAGCTTTGCACTTGC+AGG + chr1.1:29204154-29204173 None:intergenic 50.0%
GAAGAAGGTAAGTGACGTGG+AGG - chr1.1:29203894-29203913 MS.gene72260:intron 50.0%
GAGATTGTGCTGCGTGAAGA+TGG - chr1.1:29205049-29205068 MS.gene72260:intron 50.0%
GATGAGGAAGAGGACGATGA+TGG - chr1.1:29203934-29203953 MS.gene72260:intron 50.0%
GGCAACAAAACTCATACCCG+TGG - chr1.1:29202968-29202987 MS.gene72260:CDS 50.0%
TGAGAATCGGGTATGGGGAT+GGG - chr1.1:29203456-29203475 MS.gene72260:intron 50.0%
! TCTTCATTCGGGACGGGTTT+GGG + chr1.1:29203133-29203152 None:intergenic 50.0%
! TTCTTCATTCGGGACGGGTT+TGG + chr1.1:29203134-29203153 None:intergenic 50.0%
!! CAAATTGGGTTTGGTTCGGG+TGG + chr1.1:29202998-29203017 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG - chr1.1:29203020-29203039 MS.gene72260:CDS 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG - chr1.1:29203026-29203045 MS.gene72260:CDS 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG - chr1.1:29203025-29203044 MS.gene72260:CDS 50.0%
AACGGGTATGGGACGGGTAA+CGG - chr1.1:29203079-29203098 MS.gene72260:intron 55.0%
AATACGCATGGCAATGGGGC+GGG + chr1.1:29203503-29203522 None:intergenic 55.0%
ACGGGTTTGGGTATGGGTTC+GGG + chr1.1:29203121-29203140 None:intergenic 55.0%
AGAGAGGCCAAGTACGTACG+TGG - chr1.1:29204945-29204964 MS.gene72260:intron 55.0%
GAGAATCGGGTATGGGGATG+GGG - chr1.1:29203457-29203476 MS.gene72260:intron 55.0%
GATGGTCGAGTACGTGTGCT+AGG - chr1.1:29204971-29204990 MS.gene72260:intron 55.0%
TCGAGTACGTGTGCTAGGGT+GGG - chr1.1:29204976-29204995 MS.gene72260:intron 55.0%
TTTGGGTATGGGTTCGGGGT+GGG + chr1.1:29203116-29203135 None:intergenic 55.0%
! ATTCGGGACGGGTTTGGGTA+TGG + chr1.1:29203128-29203147 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+CGG + chr1.1:29203122-29203141 None:intergenic 55.0%
! TTCGGGACGGGTTTGGGTAT+GGG + chr1.1:29203127-29203146 None:intergenic 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG - chr1.1:29203019-29203038 MS.gene72260:CDS 55.0%
!! GGGACGGGTAACGGGTATAT+AGG - chr1.1:29203088-29203107 MS.gene72260:intron 55.0%
!! TTGGTTCGGGTGGGTAACCA+CGG + chr1.1:29202988-29203007 None:intergenic 55.0%
ACGGGTATGGGACGGGTAAC+GGG - chr1.1:29203080-29203099 MS.gene72260:intron 60.0%
ATACCCGAACACGTCGGGGA+CGG - chr1.1:29203376-29203395 MS.gene72260:intron 60.0%
ATACGCATGGCAATGGGGCG+GGG + chr1.1:29203502-29203521 None:intergenic 60.0%
ATTCAATGCGGGGACGGGGA+TGG - chr1.1:29203346-29203365 MS.gene72260:intron 60.0%
CGGGTTTGGGTATGGGTTCG+GGG + chr1.1:29203120-29203139 None:intergenic 60.0%
GTCGAGTACGTGTGCTAGGG+TGG - chr1.1:29204975-29204994 MS.gene72260:intron 60.0%
GTTTGGGTATGGGTTCGGGG+TGG + chr1.1:29203117-29203136 None:intergenic 60.0%
TTCAATGCGGGGACGGGGAT+GGG - chr1.1:29203347-29203366 MS.gene72260:intron 60.0%
! TGGTTCGGGTGGGTAACCAC+GGG + chr1.1:29202987-29203006 None:intergenic 60.0%
ATCCCCGTCCCCGACGTGTT+CGG + chr1.1:29203383-29203402 None:intergenic 65.0%
CGGGGATACCCGAACACGTC+GGG - chr1.1:29203371-29203390 MS.gene72260:intron 65.0%
GCGGGGATACCCGAACACGT+CGG - chr1.1:29203370-29203389 MS.gene72260:intron 65.0%
GGGGATACCCGAACACGTCG+GGG - chr1.1:29203372-29203391 MS.gene72260:intron 65.0%
TACCCGAACACGTCGGGGAC+GGG - chr1.1:29203377-29203396 MS.gene72260:intron 65.0%
TCAATGCGGGGACGGGGATG+GGG - chr1.1:29203348-29203367 MS.gene72260:intron 65.0%
ACCCGAACACGTCGGGGACG+GGG - chr1.1:29203378-29203397 MS.gene72260:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG + chr1.1:29203497-29203516 None:intergenic 70.0%
GCATGGCAATGGGGCGGGGT+GGG + chr1.1:29203498-29203517 None:intergenic 70.0%
TCCCCGTCCCCGACGTGTTC+GGG + chr1.1:29203382-29203401 None:intergenic 70.0%
ATGCGGGGACGGGGATGGGG+CGG - chr1.1:29203351-29203370 MS.gene72260:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG + chr1.1:29203492-29203511 None:intergenic 75.0%
CGCATGGCAATGGGGCGGGG+TGG + chr1.1:29203499-29203518 None:intergenic 75.0%
GCAATGGGGCGGGGTGGGGA+CGG + chr1.1:29203493-29203512 None:intergenic 75.0%
! TGCGGGGACGGGGATGGGGC+GGG - chr1.1:29203352-29203371 MS.gene72260:intron 80.0%
! GCGGGGACGGGGATGGGGCG+GGG - chr1.1:29203353-29203372 MS.gene72260:intron 85.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 29202837 29205114 29202837 ID=MS.gene72260
chr1.1 mRNA 29202837 29205114 29202837 ID=MS.gene72260.t1;Parent=MS.gene72260
chr1.1 exon 29205052 29205114 29205052 ID=MS.gene72260.t1.exon1;Parent=MS.gene72260.t1
chr1.1 CDS 29205052 29205114 29205052 ID=cds.MS.gene72260.t1;Parent=MS.gene72260.t1
chr1.1 exon 29204051 29204311 29204051 ID=MS.gene72260.t1.exon2;Parent=MS.gene72260.t1
chr1.1 CDS 29204051 29204311 29204051 ID=cds.MS.gene72260.t1;Parent=MS.gene72260.t1
chr1.1 exon 29203783 29203896 29203783 ID=MS.gene72260.t1.exon3;Parent=MS.gene72260.t1
chr1.1 CDS 29203783 29203896 29203783 ID=cds.MS.gene72260.t1;Parent=MS.gene72260.t1
chr1.1 exon 29203549 29203673 29203549 ID=MS.gene72260.t1.exon4;Parent=MS.gene72260.t1
chr1.1 CDS 29203549 29203673 29203549 ID=cds.MS.gene72260.t1;Parent=MS.gene72260.t1
chr1.1 exon 29203193 29203277 29203193 ID=MS.gene72260.t1.exon5;Parent=MS.gene72260.t1
chr1.1 CDS 29203193 29203277 29203193 ID=cds.MS.gene72260.t1;Parent=MS.gene72260.t1
chr1.1 exon 29202837 29203076 29202837 ID=MS.gene72260.t1.exon6;Parent=MS.gene72260.t1
chr1.1 CDS 29202837 29203076 29202837 ID=cds.MS.gene72260.t1;Parent=MS.gene72260.t1
Gene Sequence

>MS.gene72260

ATGGCCAAGGATTACCCAGATTTCTTCAAAGTTTTTTCTACAGAAAAGCACACTGAAAGAATGGTACGTACTACTTGCTTATTCTCAACCATGCTTTCTCCAATGTTTTTTATTCCTTTTTGATTAGGCATGGCAACAAAACTCATACCCGTGGTTACCCACCCGAACCAAACCCAATTTGACGGGTTTTCCCCGTTTTGACTGGGTTTGGGTATGGGTTTGGGTTTTCCCCGATTTCAAAAAACGGGTATGGGACGGGTAACGGGTATATAGGTACCCACCCCGAACCCATACCCAAACCCGTCCCGAATGAAGAAAACTACTTAATGTTGATATGCCATGTTATTTTGTTTGATAATTGCCGTGTTATAAAAACTACCATTGATATTTAAAGGAGCAACTAAATCAATTGATCTAACAAATGTTAAAGTGAACACATTGTTGGATAATGCGTTTCAATATTTCTCTAGGGGTTGCAAAAAAACTTCTATTTTTTATTAAAAAAAATTATTCAATGCGGGGACGGGGATGGGGCGGGGATACCCGAACACGTCGGGGACGGGGATGAGTTTCAATTTCTCATCCCCGTTGGATATGGGTAAGGTAACGGGTAAATATATGAGAATCGGGTATGGGGATGGGGAATGTAAAACCCGTCCCCACCCCGCCCCATTGCCATGCGTATTTTTGATAAAAACCAGTTTGGTATGCAAAGAAATAATATGAAGTGTATTGAAATAACTTGTGATGTAGTAGTTATTTACTACTAATTAATCTTCATCATTTTCTTTAATCTATTGCAGCGTATCCCTAATGCTTTTGTGAACTTGATGCGTTCAAAAAGGAAGGTCATAAAGGATTTCATCCTAAGAGATCGTAGAGGAAGAGATTGGCATGTCAAAGCTCGTCGTATTGGCGATGAGCTTTATTTTGACGATGGTTGGAAGCAATTTAGAGACGAAAATTCTTTAGAGGAGGATGATTTCCTTGTTTTTACACATATTGAAAATAACATATTCAGGTTCAAAATTCTTGAACTATCATCAATGTGTGAAAAGAAGAAGGTAAGTGACGTGGAGGAAAATAACATTATGGAGGATGAGGAAGAGGACGATGATGGTGATGATGATGATGACGATGATGGTGATGATGATGATGACGGTGATGATGACGATGATGATGATGCTGCTGCTGCTGCTGATGATGATATTATGGCAGAGGAAGAACATCATGATACCGATGATGATGGTGATGACGACGAGAATGAAAGAATGTATAAGGAAATTAGTAGAAGTAAACATCAACATTGTAGAACCTGCAAGTGCAAAGCTGGTAAGTTTTGACATCATTCTGAAGATAAAATTACTATTTTGTTTTTTCATTCTATATGAGTTTGTGCATGCATGAGTCAGAATTTACCTGATGATTTATTTTGGTTTAGCGGACATTGGGAGCAGCTCTGCACGTTCAAAACTTGAAGATGACGAAATTGATGCTGAAATGTATATTCAACCCGGAAATCCACACTTCATTGCAAAATATATTCATTCCAGACCTAATGAATTGGTACAATTCTTTATGTCCATTACTTTTTTTTTTGACATGGAAGCATAGTTAAACGAGTGATTAGTCCATTTGCTTAACCCTAGGTAGAGGAGTTAGTCGAAATTTTCACCTTCGACTTGTCATTTCTTATCAATTTTCCTTTGTACTCTATGCCTGCTAGTTATTCTCTTTATTACTTTTATGTTGTTGCAATTTTAGTTTTCATAACTTACAATCATTTCATGTTACTTCTTTGATGTACTTATTATGCCATCACTCTTCACATTTGAAGTTTATTCCAAAGAATGTTATCAAGGATTTCTGCCTCTGCTTCACAAAACATGTCACCCTTGAATGTTGCCACTGCAAAAGGTATAGTATAATTCCAATCTTTACCTTTCATTTTTCACTATTATGAAGTGGTATCCACTTTTGTTTAATGTGTTGATAATTTGATATTCAAGTTGCATTCATCCTTTTTTGGTTATGACAGGACATTCAGAGCAATGACTTAGCAGCCTATCATCACATCTTGCCACAAATAAGCACAACACATATCGAAAAGAGAGGCCAAGTACGTACGTGGAGAGATGGTCGAGTACGTGTGCTAGGGTGGGAAGATTTTTGTAGAAAGTGCAATATCACAGAAAATGATAGTTGCTTATGCGAGATTGTGCTGCGTGAAGATGGAAAAATCGAAATGTTAAGGGTGCACATTGTTAGGAAGGAATGA
Protein sequence

>MS.gene72260.t1

MAKDYPDFFKVFSTEKHTERMRIPNAFVNLMRSKRKVIKDFILRDRRGRDWHVKARRIGDELYFDDGWKQFRDENSLEEDDFLVFTHIENNIFRFKILELSSMCEKKKRKNIMIPMMMVMTTRMKECIRKLVEVNINIVEPASAKLRTLGAALHVQNLKMTKLMLKCIFNPEIHTSLQNIFIPDLMNCLFQRMLSRISASASQNMSPLNVATAKGIDIQSNDLAAYHHILPQISTTHIEKRGQVRTWRDGRVRVLGWEDFCRKCNITENDSCLCEIVLREDGKIEMLRVHIVRKE