Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72261.t1 | XP_013467138.1 | 85.5 | 332 | 19 | 2 | 16 | 346 | 21 | 324 | 1.00E-125 | 459.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72261.t1 | Q84R27 | 41.2 | 85 | 47 | 2 | 16 | 100 | 44 | 125 | 4.4e-08 | 60.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72261.t1 | A0A072VGJ6 | 85.5 | 332 | 19 | 2 | 16 | 346 | 21 | 324 | 7.4e-126 | 459.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72261.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72261.t1 | MTR_1g046340 | 60.299 | 335 | 106 | 5 | 16 | 346 | 24 | 335 | 8.16e-126 | 364 |
| MS.gene72261.t1 | MTR_1g046200 | 92.899 | 169 | 11 | 1 | 179 | 346 | 156 | 324 | 4.84e-112 | 329 |
| MS.gene72261.t1 | MTR_1g046320 | 70.930 | 172 | 48 | 1 | 174 | 345 | 164 | 333 | 1.28e-86 | 265 |
| MS.gene72261.t1 | MTR_3g088515 | 71.429 | 91 | 24 | 1 | 7 | 97 | 28 | 116 | 2.87e-37 | 134 |
| MS.gene72261.t1 | MTR_3g088515 | 68.889 | 45 | 12 | 1 | 197 | 241 | 205 | 247 | 1.05e-11 | 64.7 |
| MS.gene72261.t1 | MTR_1g021435 | 25.170 | 147 | 106 | 2 | 18 | 162 | 38 | 182 | 1.46e-13 | 71.2 |
| MS.gene72261.t1 | MTR_1g021330 | 22.807 | 228 | 161 | 6 | 16 | 230 | 40 | 265 | 8.11e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72261.t1 | AT3G06160 | 22.054 | 331 | 214 | 6 | 15 | 344 | 22 | 309 | 1.20e-15 | 77.0 |
| MS.gene72261.t1 | AT3G06160 | 22.054 | 331 | 214 | 6 | 15 | 344 | 22 | 309 | 1.20e-15 | 77.0 |
| MS.gene72261.t1 | AT3G06160 | 22.054 | 331 | 214 | 6 | 15 | 344 | 22 | 309 | 1.20e-15 | 77.0 |
| MS.gene72261.t1 | AT3G06160 | 21.493 | 335 | 211 | 6 | 15 | 344 | 37 | 324 | 1.62e-15 | 77.0 |
| MS.gene72261.t1 | AT3G06160 | 21.450 | 331 | 216 | 6 | 15 | 344 | 81 | 368 | 2.71e-15 | 76.6 |
| MS.gene72261.t1 | AT3G18960 | 41.379 | 87 | 48 | 2 | 16 | 102 | 44 | 127 | 3.34e-12 | 65.1 |
| MS.gene72261.t1 | AT3G18960 | 41.379 | 87 | 48 | 2 | 16 | 102 | 44 | 127 | 4.22e-12 | 65.1 |
| MS.gene72261.t1 | AT4G01580 | 40.000 | 85 | 48 | 2 | 16 | 100 | 44 | 125 | 2.61e-11 | 62.4 |
| MS.gene72261.t1 | AT3G18960 | 40.698 | 86 | 48 | 2 | 17 | 102 | 8 | 90 | 2.64e-11 | 62.0 |
Find 61 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCCTTGATAACATTCTT+TGG | 0.266607 | 1.1:+29168875 | None:intergenic |
| TAGAGAGGAAAATTCTTTAG+AGG | 0.303868 | 1.1:-29169678 | MS.gene72261:CDS |
| AAGAATTATACCAATTCATT+AGG | 0.318363 | 1.1:+29169054 | None:intergenic |
| TGCTGATGATGATGATATTA+TGG | 0.320629 | 1.1:-29169456 | MS.gene72261:CDS |
| CTTACAAGCTTTGCACTTGC+AGG | 0.325608 | 1.1:+29169295 | None:intergenic |
| TGAACTTGATGCGTTCAAAA+AGG | 0.339507 | 1.1:-29169808 | MS.gene72261:CDS |
| TGTTAAGGGTGCACGTTGTT+AGG | 0.340964 | 1.1:-29168480 | MS.gene72261:CDS |
| CGAGAATGAAAGAATGTATA+AGG | 0.350460 | 1.1:-29169351 | MS.gene72261:CDS |
| ATCAAGTTCACAAAAGCATT+AGG | 0.355825 | 1.1:+29169821 | None:intergenic |
| CCTTACAGTGGCAACTTTCA+AGG | 0.357910 | 1.1:+29168825 | None:intergenic |
| GCAATAAAGTATGGATTTCC+CGG | 0.360239 | 1.1:+29169096 | None:intergenic |
| AGATCGTGATGATGATATTA+TGG | 0.361728 | 1.1:-29169423 | MS.gene72261:CDS |
| ATGGAACAATCGAAATGTTA+AGG | 0.368271 | 1.1:-29168495 | MS.gene72261:CDS |
| TGCTGAAATATATATTCAAC+CGG | 0.368834 | 1.1:-29169115 | MS.gene72261:CDS |
| ATATGTGTTGTGCTTATTTG+TGG | 0.421461 | 1.1:+29168646 | None:intergenic |
| ATATTGAAAATAACATATTC+AGG | 0.423216 | 1.1:-29169631 | MS.gene72261:CDS |
| TCATTCCAGACCTAATGAAT+TGG | 0.425620 | 1.1:-29169064 | MS.gene72261:intron |
| TTATACCAATTCATTAGGTC+TGG | 0.427821 | 1.1:+29169059 | None:intergenic |
| TCAAGTTCACAAAAGCATTA+GGG | 0.428525 | 1.1:+29169822 | None:intergenic |
| CGTGGAGGAAAATAACAATA+TGG | 0.437023 | 1.1:-29169558 | MS.gene72261:CDS |
| CAATATGGAGGATGAGGAAG+AGG | 0.441370 | 1.1:-29169543 | MS.gene72261:CDS |
| CATGTCAAAGCTCGTCGTAT+TGG | 0.455772 | 1.1:-29169737 | MS.gene72261:CDS |
| CCTTGAAAGTTGCCACTGTA+AGG | 0.456817 | 1.1:-29168825 | MS.gene72261:intron |
| TATTCCAAAGAATGTTATCA+AGG | 0.458986 | 1.1:-29168879 | MS.gene72261:CDS |
| TGGAACAATCGAAATGTTAA+GGG | 0.479872 | 1.1:-29168494 | MS.gene72261:CDS |
| CGTCTCTCCATGTACGTACC+TGG | 0.483805 | 1.1:+29168611 | None:intergenic |
| TTGTGGCAAGATGTGATGAT+AGG | 0.494426 | 1.1:+29168663 | None:intergenic |
| AAATAACAATATGGAGGATG+AGG | 0.505646 | 1.1:-29169549 | MS.gene72261:CDS |
| GAGATCGTAGAGGAAAAGAT+TGG | 0.509337 | 1.1:-29169760 | MS.gene72261:CDS |
| GTCGAGTACGTGTGCTAGGG+TGG | 0.518338 | 1.1:-29168588 | MS.gene72261:CDS |
| GACGGTCGAGTACGTGTGCT+AGG | 0.524901 | 1.1:-29168592 | MS.gene72261:CDS |
| AGAGGAAAATTCTTTAGAGG+AGG | 0.525644 | 1.1:-29169675 | MS.gene72261:CDS |
| AAGGGTGCACGTTGTTAGGA+AGG | 0.527041 | 1.1:-29168476 | MS.gene72261:CDS |
| AGAGAGGCCAGGTACGTACA+TGG | 0.557141 | 1.1:-29168618 | MS.gene72261:CDS |
| GATGAGGAAGAGGAGAATGA+TGG | 0.558031 | 1.1:-29169533 | MS.gene72261:CDS |
| CTTACAGTGGCAACTTTCAA+GGG | 0.563568 | 1.1:+29168826 | None:intergenic |
| AGCAATGTGTGAAAAGAAGA+AGG | 0.565498 | 1.1:-29169588 | MS.gene72261:CDS |
| TGATGATGATATTATGGCAG+AGG | 0.566435 | 1.1:-29169417 | MS.gene72261:CDS |
| GAGATTGTGCTGCGTGAAGA+TGG | 0.578226 | 1.1:-29168514 | MS.gene72261:CDS |
| GAACGTGCCTACGACACATG+TGG | 0.585577 | 1.1:-29170361 | MS.gene72261:CDS |
| CATGATACCGATGATGATGA+TGG | 0.612164 | 1.1:-29169386 | MS.gene72261:CDS |
| ACATATCGAAAAGAGAGGCC+AGG | 0.618790 | 1.1:-29168629 | MS.gene72261:CDS |
| TGCCTACGACACATGTGGGA+TGG | 0.619197 | 1.1:-29170356 | MS.gene72261:intron |
| ATTAAAATTATACCTTACAG+TGG | 0.619320 | 1.1:+29168813 | None:intergenic |
| AACGTGCCTACGACACATGT+GGG | 0.621868 | 1.1:-29170360 | MS.gene72261:CDS |
| TCGAGTACGTGTGCTAGGGT+GGG | 0.623409 | 1.1:-29168587 | MS.gene72261:CDS |
| GTCATCACCATCATCATCAT+CGG | 0.626181 | 1.1:+29169379 | None:intergenic |
| TGATGATGATATTATGGCAG+AGG | 0.629976 | 1.1:-29169450 | MS.gene72261:CDS |
| ACGGTCGAGTACGTGTGCTA+GGG | 0.631460 | 1.1:-29168591 | MS.gene72261:CDS |
| TTGAACGAATGAAATGGAAG+CGG | 0.634019 | 1.1:-29170395 | None:intergenic |
| GAAGAAGGTAAGTTACGTGG+AGG | 0.635153 | 1.1:-29169573 | MS.gene72261:CDS |
| GGAGGAAAATAACAATATGG+AGG | 0.639957 | 1.1:-29169555 | MS.gene72261:CDS |
| CATTCAGAGAAATGACTTAG+CGG | 0.650939 | 1.1:-29168686 | MS.gene72261:CDS |
| AAAGAAGAAGGTAAGTTACG+TGG | 0.654537 | 1.1:-29169576 | MS.gene72261:CDS |
| TACCATCCCACATGTGTCGT+AGG | 0.664947 | 1.1:+29170354 | None:intergenic |
| TGGCTGGAAGCAATTTAGAG+AGG | 0.675373 | 1.1:-29169693 | MS.gene72261:CDS |
| ACAACACATATCGAAAAGAG+AGG | 0.679363 | 1.1:-29168634 | MS.gene72261:CDS |
| CAGGTACGTACATGGAGAGA+CGG | 0.695412 | 1.1:-29168610 | MS.gene72261:CDS |
| GCTGAAATATATATTCAACC+GGG | 0.695568 | 1.1:-29169114 | MS.gene72261:CDS |
| TGATGATGATGACGATGACG+AGG | 0.734080 | 1.1:-29169507 | MS.gene72261:CDS |
| TTTATCCTAAGAGATCGTAG+AGG | 0.735718 | 1.1:-29169770 | MS.gene72261:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAATAACATATTC+AGG | - | chr1.1:29169222-29169241 | MS.gene72261:intron | 15.0% |
| !! | TGTCCAAAAAATAAAATAAA+TGG | + | chr1.1:29169830-29169849 | None:intergenic | 15.0% |
| !!! | AGTTTGATGAATTTTTTTTT+TGG | - | chr1.1:29168839-29168858 | MS.gene72261:CDS | 15.0% |
| !!! | ATATATTTTGCAATAAAGTA+TGG | + | chr1.1:29169769-29169788 | None:intergenic | 15.0% |
| !!! | TCAATGAAATTTGATTTTTT+AGG | - | chr1.1:29168785-29168804 | MS.gene72261:intron | 15.0% |
| !!! | TGTCCATTTATTTTATTTTT+TGG | - | chr1.1:29169824-29169843 | MS.gene72261:CDS | 15.0% |
| !!! | TTTATTTTATTTTTTGGACA+TGG | - | chr1.1:29169830-29169849 | MS.gene72261:CDS | 15.0% |
| !!! | TTTTTTTCATAAAATCAGTT+TGG | - | chr1.1:29168874-29168893 | MS.gene72261:CDS | 15.0% |
| !! | AAGAATTATACCAATTCATT+AGG | + | chr1.1:29169802-29169821 | None:intergenic | 20.0% |
| !! | ATCGTGACAAAAAAAAATAA+AGG | + | chr1.1:29168712-29168731 | None:intergenic | 20.0% |
| !! | ATTAAAATTATACCTTACAG+TGG | + | chr1.1:29170043-29170062 | None:intergenic | 20.0% |
| !! | TAACCATAAAAAAGAAAGAA+GGG | + | chr1.1:29168538-29168557 | None:intergenic | 20.0% |
| !! | TCATAATTGTGAAAAATGAA+AGG | + | chr1.1:29170071-29170090 | None:intergenic | 20.0% |
| !! | TTTCAATATGTGTAAAAACA+AGG | + | chr1.1:29169211-29169230 | None:intergenic | 20.0% |
| !!! | AATTTTGCCTTTATTTTTGA+GGG | + | chr1.1:29168647-29168666 | None:intergenic | 20.0% |
| !!! | TAATTTTGCCTTTATTTTTG+AGG | + | chr1.1:29168648-29168667 | None:intergenic | 20.0% |
| !!! | TGATGATTTATTTTGCTTTA+GGG | - | chr1.1:29169665-29169684 | MS.gene72261:CDS | 20.0% |
| ! | AAACTAAAATTGCAACAACT+TGG | + | chr1.1:29169882-29169901 | None:intergenic | 25.0% |
| ! | AACCATAAAAAAGAAAGAAG+GGG | + | chr1.1:29168537-29168556 | None:intergenic | 25.0% |
| ! | CTAAAGCAAAATAAATCATC+AGG | + | chr1.1:29169666-29169685 | None:intergenic | 25.0% |
| ! | CTTACAAAGAAATGAAAGAA+GGG | + | chr1.1:29168569-29168588 | None:intergenic | 25.0% |
| ! | GTAACCATAAAAAAGAAAGA+AGG | + | chr1.1:29168539-29168558 | None:intergenic | 25.0% |
| ! | GTTACCTAAAATCAAGTTAA+GGG | + | chr1.1:29168681-29168700 | None:intergenic | 25.0% |
| ! | TATTCCAAAGAATGTTATCA+AGG | - | chr1.1:29169974-29169993 | MS.gene72261:intron | 25.0% |
| ! | TCTTACAAAGAAATGAAAGA+AGG | + | chr1.1:29168570-29168589 | None:intergenic | 25.0% |
| ! | TGCTGAAATATATATTCAAC+CGG | - | chr1.1:29169738-29169757 | MS.gene72261:CDS | 25.0% |
| ! | TGTTACCTAAAATCAAGTTA+AGG | + | chr1.1:29168682-29168701 | None:intergenic | 25.0% |
| ! | TTACAAAGAAATGAAAGAAG+GGG | + | chr1.1:29168568-29168587 | None:intergenic | 25.0% |
| !! | AAATCCTTGATAACATTCTT+TGG | + | chr1.1:29169981-29170000 | None:intergenic | 25.0% |
| !!! | ATTTTGCCTTTATTTTTGAG+GGG | + | chr1.1:29168646-29168665 | None:intergenic | 25.0% |
| !!! | CTGATGATTTATTTTGCTTT+AGG | - | chr1.1:29169664-29169683 | MS.gene72261:CDS | 25.0% |
| !!! | GATGATTTATTTTGCTTTAG+GGG | - | chr1.1:29169666-29169685 | MS.gene72261:CDS | 25.0% |
| AAATAACAATATGGAGGATG+AGG | - | chr1.1:29169304-29169323 | MS.gene72261:CDS | 30.0% | |
| AATACACTTATTAGACTCTG+AGG | + | chr1.1:29168936-29168955 | None:intergenic | 30.0% | |
| ACCATAAAAAAGAAAGAAGG+GGG | + | chr1.1:29168536-29168555 | None:intergenic | 30.0% | |
| ATATGTGTTGTGCTTATTTG+TGG | + | chr1.1:29170210-29170229 | None:intergenic | 30.0% | |
| ATGGAACAATCGAAATGTTA+AGG | - | chr1.1:29170358-29170377 | MS.gene72261:CDS | 30.0% | |
| CGAGAATGAAAGAATGTATA+AGG | - | chr1.1:29169502-29169521 | MS.gene72261:CDS | 30.0% | |
| GCTGAAATATATATTCAACC+GGG | - | chr1.1:29169739-29169758 | MS.gene72261:CDS | 30.0% | |
| TACAAAGAAATGAAAGAAGG+GGG | + | chr1.1:29168567-29168586 | None:intergenic | 30.0% | |
| TAGAGAGGAAAATTCTTTAG+AGG | - | chr1.1:29169175-29169194 | MS.gene72261:intron | 30.0% | |
| TGGAACAATCGAAATGTTAA+GGG | - | chr1.1:29170359-29170378 | MS.gene72261:CDS | 30.0% | |
| TTATACCAATTCATTAGGTC+TGG | + | chr1.1:29169797-29169816 | None:intergenic | 30.0% | |
| TTCAAAAAGGAGGGTAATAA+AGG | - | chr1.1:29169058-29169077 | MS.gene72261:intron | 30.0% | |
| ! | AGATCGTGATGATGATATTA+TGG | - | chr1.1:29169430-29169449 | MS.gene72261:CDS | 30.0% |
| ! | TGCTGATGATGATGATATTA+TGG | - | chr1.1:29169397-29169416 | MS.gene72261:CDS | 30.0% |
| !! | ATCAAGTTCACAAAAGCATT+AGG | + | chr1.1:29169035-29169054 | None:intergenic | 30.0% |
| !! | TAGTCCCTTAACTTGATTTT+AGG | - | chr1.1:29168674-29168693 | MS.gene72261:CDS | 30.0% |
| !! | TCAAGTTCACAAAAGCATTA+GGG | + | chr1.1:29169034-29169053 | None:intergenic | 30.0% |
| !!! | AAGTTGCATTCATCCTTTTT+TGG | - | chr1.1:29170133-29170152 | MS.gene72261:intron | 30.0% |
| !!! | TTTTGCCTTTATTTTTGAGG+GGG | + | chr1.1:29168645-29168664 | None:intergenic | 30.0% |
| AAAGAAGAAGGTAAGTTACG+TGG | - | chr1.1:29169277-29169296 | MS.gene72261:intron | 35.0% | |
| ACAACACATATCGAAAAGAG+AGG | - | chr1.1:29170219-29170238 | MS.gene72261:intron | 35.0% | |
| ACTTCAAATGTGAAGAGTGA+TGG | + | chr1.1:29169953-29169972 | None:intergenic | 35.0% | |
| AGCAATGTGTGAAAAGAAGA+AGG | - | chr1.1:29169265-29169284 | MS.gene72261:intron | 35.0% | |
| ATAAGCCCCCTCAAAAATAA+AGG | - | chr1.1:29168637-29168656 | MS.gene72261:CDS | 35.0% | |
| CATTCAGAGAAATGACTTAG+CGG | - | chr1.1:29170167-29170186 | MS.gene72261:intron | 35.0% | |
| CGTGGAGGAAAATAACAATA+TGG | - | chr1.1:29169295-29169314 | MS.gene72261:intron | 35.0% | |
| GCAATAAAGTATGGATTTCC+CGG | + | chr1.1:29169760-29169779 | None:intergenic | 35.0% | |
| GGAGGAAAATAACAATATGG+AGG | - | chr1.1:29169298-29169317 | MS.gene72261:intron | 35.0% | |
| TAAAATTGCAACAACTTGGC+TGG | + | chr1.1:29169878-29169897 | None:intergenic | 35.0% | |
| TCATTCCAGACCTAATGAAT+TGG | - | chr1.1:29169789-29169808 | MS.gene72261:CDS | 35.0% | |
| TCTGAGGAGATAACATAGTT+GGG | + | chr1.1:29168920-29168939 | None:intergenic | 35.0% | |
| TGAACTTGATGCGTTCAAAA+AGG | - | chr1.1:29169045-29169064 | MS.gene72261:intron | 35.0% | |
| TGTCCTGTCATAACCAAAAA+AGG | + | chr1.1:29170149-29170168 | None:intergenic | 35.0% | |
| TTTATCCTAAGAGATCGTAG+AGG | - | chr1.1:29169083-29169102 | MS.gene72261:CDS | 35.0% | |
| ! | AGAGGAAAATTCTTTAGAGG+AGG | - | chr1.1:29169178-29169197 | MS.gene72261:intron | 35.0% |
| ! | TGATGATGATATTATGGCAG+AGG | - | chr1.1:29169403-29169422 | MS.gene72261:CDS | 35.0% |
| !!! | ACCCCCTTCTTTCTTTTTTA+TGG | - | chr1.1:29168532-29168551 | MS.gene72261:CDS | 35.0% |
| !!! | ATTTTGCTTTAGGGGACATT+GGG | - | chr1.1:29169674-29169693 | MS.gene72261:CDS | 35.0% |
| !!! | CATCCTTTTTTGGTTATGAC+AGG | - | chr1.1:29170143-29170162 | MS.gene72261:intron | 35.0% |
| !!! | GATGAGCTTTATTTTGACGA+TGG | - | chr1.1:29169140-29169159 | MS.gene72261:CDS | 35.0% |
| !!! | TATTTTGCTTTAGGGGACAT+TGG | - | chr1.1:29169673-29169692 | MS.gene72261:CDS | 35.0% |
| ACTTGATGCGTTCAAAAAGG+AGG | - | chr1.1:29169048-29169067 | MS.gene72261:intron | 40.0% | |
| CTTACAGTGGCAACTTTCAA+GGG | + | chr1.1:29170030-29170049 | None:intergenic | 40.0% | |
| CTTGATGCGTTCAAAAAGGA+GGG | - | chr1.1:29169049-29169068 | MS.gene72261:intron | 40.0% | |
| GAGATCGTAGAGGAAAAGAT+TGG | - | chr1.1:29169093-29169112 | MS.gene72261:CDS | 40.0% | |
| GTCATCACCATCATCATCAT+CGG | + | chr1.1:29169477-29169496 | None:intergenic | 40.0% | |
| TTGTGGCAAGATGTGATGAT+AGG | + | chr1.1:29170193-29170212 | None:intergenic | 40.0% | |
| ! | CATGATACCGATGATGATGA+TGG | - | chr1.1:29169467-29169486 | MS.gene72261:CDS | 40.0% |
| ! | CTCTGAGGAGATAACATAGT+TGG | + | chr1.1:29168921-29168940 | None:intergenic | 40.0% |
| ! | CTTTTCCTCTACGATCTCTT+AGG | + | chr1.1:29169091-29169110 | None:intergenic | 40.0% |
| !!! | AGCTTTATTTTGACGATGGC+TGG | - | chr1.1:29169144-29169163 | MS.gene72261:CDS | 40.0% |
| ACATATCGAAAAGAGAGGCC+AGG | - | chr1.1:29170224-29170243 | MS.gene72261:intron | 45.0% | |
| ATTGCAACAACTTGGCTGGA+AGG | + | chr1.1:29169874-29169893 | None:intergenic | 45.0% | |
| CAATATGGAGGATGAGGAAG+AGG | - | chr1.1:29169310-29169329 | MS.gene72261:CDS | 45.0% | |
| CATGTCAAAGCTCGTCGTAT+TGG | - | chr1.1:29169116-29169135 | MS.gene72261:CDS | 45.0% | |
| CCTTACAGTGGCAACTTTCA+AGG | + | chr1.1:29170031-29170050 | None:intergenic | 45.0% | |
| CCTTGAAAGTTGCCACTGTA+AGG | - | chr1.1:29170028-29170047 | MS.gene72261:intron | 45.0% | |
| CTTACAAGCTTTGCACTTGC+AGG | + | chr1.1:29169561-29169580 | None:intergenic | 45.0% | |
| GAAGAAGGTAAGTTACGTGG+AGG | - | chr1.1:29169280-29169299 | MS.gene72261:intron | 45.0% | |
| GATGAGGAAGAGGAGAATGA+TGG | - | chr1.1:29169320-29169339 | MS.gene72261:CDS | 45.0% | |
| TGGCTGGAAGCAATTTAGAG+AGG | - | chr1.1:29169160-29169179 | MS.gene72261:CDS | 45.0% | |
| ! | CTAGGGTGGGAAGAATTTTG+TGG | - | chr1.1:29170279-29170298 | MS.gene72261:intron | 45.0% |
| ! | TGATGATGATGACGATGACG+AGG | - | chr1.1:29169346-29169365 | MS.gene72261:CDS | 45.0% |
| ! | TGTTAAGGGTGCACGTTGTT+AGG | - | chr1.1:29170373-29170392 | MS.gene72261:CDS | 45.0% |
| AACGTGCCTACGACACATGT+GGG | - | chr1.1:29168493-29168512 | MS.gene72261:CDS | 50.0% | |
| CAGGTACGTACATGGAGAGA+CGG | - | chr1.1:29170243-29170262 | MS.gene72261:intron | 50.0% | |
| GAGATTGTGCTGCGTGAAGA+TGG | - | chr1.1:29170339-29170358 | MS.gene72261:intron | 50.0% | |
| TACCATCCCACATGTGTCGT+AGG | + | chr1.1:29168502-29168521 | None:intergenic | 50.0% | |
| ! | AAGGGTGCACGTTGTTAGGA+AGG | - | chr1.1:29170377-29170396 | MS.gene72261:CDS | 50.0% |
| ACGGTCGAGTACGTGTGCTA+GGG | - | chr1.1:29170262-29170281 | MS.gene72261:intron | 55.0% | |
| AGAGAGGCCAGGTACGTACA+TGG | - | chr1.1:29170235-29170254 | MS.gene72261:intron | 55.0% | |
| CGTCTCTCCATGTACGTACC+TGG | + | chr1.1:29170245-29170264 | None:intergenic | 55.0% | |
| GAACGTGCCTACGACACATG+TGG | - | chr1.1:29168492-29168511 | MS.gene72261:CDS | 55.0% | |
| TCGAGTACGTGTGCTAGGGT+GGG | - | chr1.1:29170266-29170285 | MS.gene72261:intron | 55.0% | |
| TGCCTACGACACATGTGGGA+TGG | - | chr1.1:29168497-29168516 | MS.gene72261:CDS | 55.0% | |
| GACGGTCGAGTACGTGTGCT+AGG | - | chr1.1:29170261-29170280 | MS.gene72261:intron | 60.0% | |
| GTCGAGTACGTGTGCTAGGG+TGG | - | chr1.1:29170265-29170284 | MS.gene72261:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 29168471 | 29170404 | 29168471 | ID=MS.gene72261 |
| chr1.1 | mRNA | 29168471 | 29170404 | 29168471 | ID=MS.gene72261.t1;Parent=MS.gene72261 |
| chr1.1 | exon | 29170357 | 29170404 | 29170357 | ID=MS.gene72261.t1.exon1;Parent=MS.gene72261.t1 |
| chr1.1 | CDS | 29170357 | 29170404 | 29170357 | ID=cds.MS.gene72261.t1;Parent=MS.gene72261.t1 |
| chr1.1 | exon | 29169300 | 29169849 | 29169300 | ID=MS.gene72261.t1.exon2;Parent=MS.gene72261.t1 |
| chr1.1 | CDS | 29169300 | 29169849 | 29169300 | ID=cds.MS.gene72261.t1;Parent=MS.gene72261.t1 |
| chr1.1 | exon | 29169065 | 29169189 | 29169065 | ID=MS.gene72261.t1.exon3;Parent=MS.gene72261.t1 |
| chr1.1 | CDS | 29169065 | 29169189 | 29169065 | ID=cds.MS.gene72261.t1;Parent=MS.gene72261.t1 |
| chr1.1 | exon | 29168826 | 29168903 | 29168826 | ID=MS.gene72261.t1.exon4;Parent=MS.gene72261.t1 |
| chr1.1 | CDS | 29168826 | 29168903 | 29168826 | ID=cds.MS.gene72261.t1;Parent=MS.gene72261.t1 |
| chr1.1 | exon | 29168471 | 29168710 | 29168471 | ID=MS.gene72261.t1.exon5;Parent=MS.gene72261.t1 |
| chr1.1 | CDS | 29168471 | 29168710 | 29168471 | ID=cds.MS.gene72261.t1;Parent=MS.gene72261.t1 |
| Gene Sequence |
| Protein sequence |
