Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72309.t1 | KEH42071.1 | 92.7 | 313 | 19 | 3 | 1 | 312 | 178 | 487 | 1.60E-157 | 565.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72309.t1 | Q84RD0 | 40.1 | 247 | 133 | 6 | 61 | 300 | 46 | 284 | 9.1e-29 | 129.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72309.t1 | A0A072VKB3 | 92.7 | 313 | 19 | 3 | 1 | 312 | 178 | 487 | 1.1e-157 | 565.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene72309.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72309.t1 | MTR_1g060700 | 94.569 | 313 | 13 | 3 | 1 | 312 | 178 | 487 | 0.0 | 599 |
MS.gene72309.t1 | MTR_2g067000 | 81.677 | 322 | 25 | 10 | 1 | 312 | 1 | 298 | 5.22e-164 | 458 |
MS.gene72309.t1 | MTR_8g093500 | 58.491 | 53 | 22 | 0 | 182 | 234 | 125 | 177 | 2.82e-13 | 69.3 |
MS.gene72309.t1 | MTR_3g101810 | 58.491 | 53 | 22 | 0 | 182 | 234 | 182 | 234 | 1.73e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72309.t1 | AT1G30670 | 41.520 | 171 | 97 | 2 | 135 | 305 | 95 | 262 | 3.00e-29 | 113 |
MS.gene72309.t1 | AT2G34820 | 42.254 | 213 | 115 | 4 | 97 | 305 | 81 | 289 | 2.84e-28 | 110 |
MS.gene72309.t1 | AT3G21330 | 60.377 | 53 | 21 | 0 | 182 | 234 | 280 | 332 | 2.13e-13 | 70.5 |
MS.gene72309.t1 | AT5G01305 | 50.000 | 58 | 29 | 0 | 182 | 239 | 48 | 105 | 1.36e-12 | 65.5 |
MS.gene72309.t1 | AT4G00120 | 52.830 | 53 | 25 | 0 | 182 | 234 | 123 | 175 | 6.58e-12 | 63.9 |
Find 54 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTGGAATGCTTCAACTTA+TGG | 0.195386 | 1.4:-49722452 | MS.gene72309:CDS |
ATCTCTGCTGTGTTCATCTT+TGG | 0.238213 | 1.4:+49722517 | None:intergenic |
TTGGTGAAATCTTCCTCATT+TGG | 0.290806 | 1.4:+49722838 | None:intergenic |
ATCAAAACCTACCATTCTTA+AGG | 0.300143 | 1.4:-49721410 | MS.gene72309:CDS |
TCAAATAGTTAGAGGGAAAA+TGG | 0.318116 | 1.4:+49723013 | None:intergenic |
AAATAAAACTATTCTTGCTT+TGG | 0.325467 | 1.4:+49721349 | None:intergenic |
TGGTGAAATCTTCCTCATTT+GGG | 0.332786 | 1.4:+49722839 | None:intergenic |
GAAGCAAAAGGGTTAGGGTT+AGG | 0.345524 | 1.4:+49722703 | None:intergenic |
AAGCAAAAGGGTTAGGGTTA+GGG | 0.345934 | 1.4:+49722704 | None:intergenic |
TCTCCTCGTAGCATAGCTTT+TGG | 0.368098 | 1.4:+49722794 | None:intergenic |
AGTTGATCTTGACAAGGGTT+AGG | 0.369040 | 1.4:+49722922 | None:intergenic |
TCAAAGGAAGCAAAAGGGTT+AGG | 0.369513 | 1.4:+49722697 | None:intergenic |
AGTAGTGATTTCTAAGTTGT+TGG | 0.372241 | 1.4:+49723077 | None:intergenic |
GTAGTTTGAATAGGTTGATA+AGG | 0.378786 | 1.4:+49723099 | None:intergenic |
TACAGTTTCTCTTGAACAAA+TGG | 0.383908 | 1.4:+49721499 | None:intergenic |
AAGGGTCTGAAACAGCTTGC+TGG | 0.388228 | 1.4:-49721391 | MS.gene72309:CDS |
AATGTGGTGACAAACTCTTT+TGG | 0.390869 | 1.4:+49721454 | None:intergenic |
GAGCTTGGGAAGTTGGTTCC+TGG | 0.392352 | 1.4:-49722544 | MS.gene72309:CDS |
GACACAAGAGCTTGGGAAGT+TGG | 0.397999 | 1.4:-49722551 | MS.gene72309:CDS |
AAGTTGTTGGTAGTTTGAAT+AGG | 0.402079 | 1.4:+49723090 | None:intergenic |
TTGATTATTTCAGGAAGAAA+AGG | 0.406675 | 1.4:-49721563 | MS.gene72309:intron |
TAGTTTGAATAGGTTGATAA+GGG | 0.429054 | 1.4:+49723100 | None:intergenic |
AGTTTCATTCAAATAGTTAG+AGG | 0.435549 | 1.4:+49723005 | None:intergenic |
GTTGATCTTGACAAGGGTTA+GGG | 0.453473 | 1.4:+49722923 | None:intergenic |
TCAAAACCTACCATTCTTAA+GGG | 0.456430 | 1.4:-49721409 | MS.gene72309:CDS |
CAAAGGAAGCAAAAGGGTTA+GGG | 0.461232 | 1.4:+49722698 | None:intergenic |
AGAGTATCGCGGCGAGAGAA+AGG | 0.466876 | 1.4:-49722594 | MS.gene72309:CDS |
TCTACCTCAAAGGAAGCAAA+AGG | 0.468900 | 1.4:+49722691 | None:intergenic |
TTGTGTAGATCTTCACTTGG+AGG | 0.473071 | 1.4:+49721535 | None:intergenic |
GTTCAATGTGAGAAGAAAGT+TGG | 0.488552 | 1.4:-49722637 | MS.gene72309:CDS |
TGTAGATCTTCACTTGGAGG+AGG | 0.494574 | 1.4:+49721538 | None:intergenic |
GTGTTCATCTTTGGTCCACC+AGG | 0.499817 | 1.4:+49722526 | None:intergenic |
ACTGAGAAGACACAAGAGCT+TGG | 0.499993 | 1.4:-49722559 | MS.gene72309:CDS |
CTGAGAAGACACAAGAGCTT+GGG | 0.500383 | 1.4:-49722558 | MS.gene72309:CDS |
CTGTTTCAGACCCTTAAGAA+TGG | 0.516519 | 1.4:+49721399 | None:intergenic |
AGGGTCTGAAACAGCTTGCT+GGG | 0.522554 | 1.4:-49721390 | MS.gene72309:CDS |
GTTTCATTCAAATAGTTAGA+GGG | 0.549802 | 1.4:+49723006 | None:intergenic |
CTTGGGAAGTTGGTTCCTGG+TGG | 0.551828 | 1.4:-49722541 | MS.gene72309:CDS |
GTGAGAAGAAAGTTGGTGAA+AGG | 0.566992 | 1.4:-49722630 | MS.gene72309:CDS |
AAGTTTCTTCAAGCTCAAGT+TGG | 0.567049 | 1.4:-49722469 | MS.gene72309:CDS |
AGCAAAGGGTTCTACCTCAA+AGG | 0.572532 | 1.4:+49722681 | None:intergenic |
AGTTTGTGTAGATCTTCACT+TGG | 0.582386 | 1.4:+49721532 | None:intergenic |
TTCAGACCCTTAAGAATGGT+AGG | 0.583734 | 1.4:+49721403 | None:intergenic |
GAGTTCAAAAGCTCTTGTTG+TGG | 0.586358 | 1.4:+49722760 | None:intergenic |
TCGCGGCGAGAGAAAGGAGA+AGG | 0.587504 | 1.4:-49722588 | MS.gene72309:CDS |
ACTTATGGAAACATTTAACA+AGG | 0.595324 | 1.4:-49722437 | MS.gene72309:intron |
CTACCTCAAAGGAAGCAAAA+GGG | 0.620756 | 1.4:+49722692 | None:intergenic |
AATAGTTAGAGGGAAAATGG+TGG | 0.625963 | 1.4:+49723016 | None:intergenic |
ACAAGTAGTTGATCTTGACA+AGG | 0.633389 | 1.4:+49722916 | None:intergenic |
CAAGTAGTTGATCTTGACAA+GGG | 0.656926 | 1.4:+49722917 | None:intergenic |
ATCATTATGATTGCTCAATG+TGG | 0.666694 | 1.4:+49721438 | None:intergenic |
ATGCTACGAGGAGAAAAGAG+AGG | 0.681365 | 1.4:-49722785 | MS.gene72309:CDS |
TATCTCGTCGCAGAGTATCG+CGG | 0.686396 | 1.4:-49722605 | MS.gene72309:CDS |
ACGCCAAAAGCTATGCTACG+AGG | 0.715032 | 1.4:-49722797 | MS.gene72309:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATTGTTGTAAATATCTAAA+TGG | - | chr1.4:49722434-49722453 | MS.gene72309:intron | 15.0% |
!! | CATAATAACACTACAATAAA+TGG | + | chr1.4:49722409-49722428 | None:intergenic | 20.0% |
!! | CGTTTGATAAAAAAATATAG+AGG | - | chr1.4:49722378-49722397 | MS.gene72309:intron | 20.0% |
!! | GGAATTGTTATAAAAATTGA+CGG | - | chr1.4:49722590-49722609 | MS.gene72309:CDS | 20.0% |
!! | TTTACTCCATGAAAATATTT+AGG | - | chr1.4:49722569-49722588 | MS.gene72309:CDS | 20.0% |
!! | TTTCATTTGAGTAAAAACAA+GGG | + | chr1.4:49721548-49721567 | None:intergenic | 20.0% |
!!! | ACAATTCCTAAATATTTTCA+TGG | + | chr1.4:49722578-49722597 | None:intergenic | 20.0% |
!!! | TTTTGCTAATTGATTATTTC+AGG | - | chr1.4:49722923-49722942 | MS.gene72309:CDS | 20.0% |
! | AAACTCATCCACAAAAAAAT+TGG | + | chr1.4:49721763-49721782 | None:intergenic | 25.0% |
! | AAAGACAAAATTGAGACAAT+AGG | + | chr1.4:49722522-49722541 | None:intergenic | 25.0% |
! | ACTTATGGAAACATTTAACA+AGG | - | chr1.4:49722058-49722077 | MS.gene72309:intron | 25.0% |
! | AGAAAAACATCAAATTCACT+TGG | + | chr1.4:49722210-49722229 | None:intergenic | 25.0% |
! | AGTTTCATTCAAATAGTTAG+AGG | + | chr1.4:49721493-49721512 | None:intergenic | 25.0% |
! | GTTTCATTCAAATAGTTAGA+GGG | + | chr1.4:49721492-49721511 | None:intergenic | 25.0% |
! | GTTTCATTTGAGTAAAAACA+AGG | + | chr1.4:49721549-49721568 | None:intergenic | 25.0% |
! | TAACTGTTTAACAAGGAATT+TGG | - | chr1.4:49722784-49722803 | MS.gene72309:CDS | 25.0% |
! | TGTTAGGTTTAAGAAAATGT+TGG | - | chr1.4:49722620-49722639 | MS.gene72309:CDS | 25.0% |
! | TTCATTTGAGTAAAAACAAG+GGG | + | chr1.4:49721547-49721566 | None:intergenic | 25.0% |
! | TTGATTATTTCAGGAAGAAA+AGG | - | chr1.4:49722932-49722951 | MS.gene72309:CDS | 25.0% |
! | TTGTTATAAAAATTGACGGA+TGG | - | chr1.4:49722594-49722613 | MS.gene72309:CDS | 25.0% |
! | TTGTTTGTTCATTGCATATT+TGG | - | chr1.4:49722310-49722329 | MS.gene72309:intron | 25.0% |
!! | TATTTTCATGGAGTAAAAGT+TGG | + | chr1.4:49722566-49722585 | None:intergenic | 25.0% |
!! | TTAAACTGTTTTGTGTACTT+AGG | - | chr1.4:49722170-49722189 | MS.gene72309:intron | 25.0% |
!!! | ACTTTTTCTTCTCAAAATGA+TGG | - | chr1.4:49721609-49721628 | MS.gene72309:intron | 25.0% |
!!! | ATCATTTTGAGAAGAAAAAG+TGG | + | chr1.4:49721610-49721629 | None:intergenic | 25.0% |
!!! | TAGTTTGAATAGGTTGATAA+GGG | + | chr1.4:49721398-49721417 | None:intergenic | 25.0% |
ACTCAAATGATTACAAGCAA+GGG | + | chr1.4:49722352-49722371 | None:intergenic | 30.0% | |
AGTAGTGATTTCTAAGTTGT+TGG | + | chr1.4:49721421-49721440 | None:intergenic | 30.0% | |
ATCAAAACCTACCATTCTTA+AGG | - | chr1.4:49723085-49723104 | MS.gene72309:CDS | 30.0% | |
ATCATTATGATTGCTCAATG+TGG | + | chr1.4:49723060-49723079 | None:intergenic | 30.0% | |
TAATGCTGTTGTTGTAGATT+TGG | - | chr1.4:49722461-49722480 | MS.gene72309:CDS | 30.0% | |
TACAGTTTCTCTTGAACAAA+TGG | + | chr1.4:49722999-49723018 | None:intergenic | 30.0% | |
TACTCAAATGATTACAAGCA+AGG | + | chr1.4:49722353-49722372 | None:intergenic | 30.0% | |
TCAAAACCTACCATTCTTAA+GGG | - | chr1.4:49723086-49723105 | MS.gene72309:CDS | 30.0% | |
TCAAATAGTTAGAGGGAAAA+TGG | + | chr1.4:49721485-49721504 | None:intergenic | 30.0% | |
! | GAATGAAATTTTCCCAAATG+AGG | - | chr1.4:49721644-49721663 | MS.gene72309:intron | 30.0% |
! | TTTTGGACATGTAAGGTAAT+TGG | + | chr1.4:49721679-49721698 | None:intergenic | 30.0% |
!! | AAGTTGTTGGTAGTTTGAAT+AGG | + | chr1.4:49721408-49721427 | None:intergenic | 30.0% |
!! | CAATAAACGAGAGAGTATTT+AGG | - | chr1.4:49722728-49722747 | MS.gene72309:CDS | 30.0% |
!! | GTAGTTTGAATAGGTTGATA+AGG | + | chr1.4:49721399-49721418 | None:intergenic | 30.0% |
!!! | AACAATTTTTGAAGCAGCAA+AGG | + | chr1.4:49721832-49721851 | None:intergenic | 30.0% |
!!! | ACAATTTTTGAAGCAGCAAA+GGG | + | chr1.4:49721831-49721850 | None:intergenic | 30.0% |
!!! | GAACTCAACCAATTTTTTTG+TGG | - | chr1.4:49721752-49721771 | MS.gene72309:intron | 30.0% |
AAGTTTCTTCAAGCTCAAGT+TGG | - | chr1.4:49722026-49722045 | MS.gene72309:intron | 35.0% | |
AATAGTTAGAGGGAAAATGG+TGG | + | chr1.4:49721482-49721501 | None:intergenic | 35.0% | |
ACAAGTAGTTGATCTTGACA+AGG | + | chr1.4:49721582-49721601 | None:intergenic | 35.0% | |
AGGAAACGGTTAATAAGAAG+AGG | - | chr1.4:49722698-49722717 | MS.gene72309:CDS | 35.0% | |
AGTTGGAATGCTTCAACTTA+TGG | - | chr1.4:49722043-49722062 | MS.gene72309:intron | 35.0% | |
AGTTTGTGTAGATCTTCACT+TGG | + | chr1.4:49722966-49722985 | None:intergenic | 35.0% | |
ATTGAGACAATAGGTAGTCA+TGG | + | chr1.4:49722513-49722532 | None:intergenic | 35.0% | |
CAAGTAGTTGATCTTGACAA+GGG | + | chr1.4:49721581-49721600 | None:intergenic | 35.0% | |
CAAGTGTATATCAAATGAGC+TGG | - | chr1.4:49722756-49722775 | MS.gene72309:CDS | 35.0% | |
CGGTTAATAAGAAGAGGAAA+TGG | - | chr1.4:49722704-49722723 | MS.gene72309:CDS | 35.0% | |
GCAATGAACAAACAAACTCT+AGG | + | chr1.4:49722305-49722324 | None:intergenic | 35.0% | |
GGCTATGTAACTGTTTAACA+AGG | - | chr1.4:49722777-49722796 | MS.gene72309:CDS | 35.0% | |
GTTCAATGTGAGAAGAAAGT+TGG | - | chr1.4:49721858-49721877 | MS.gene72309:intron | 35.0% | |
TGGTGAAATCTTCCTCATTT+GGG | + | chr1.4:49721659-49721678 | None:intergenic | 35.0% | |
TTGGTGAAATCTTCCTCATT+TGG | + | chr1.4:49721660-49721679 | None:intergenic | 35.0% | |
! | AATGTGGTGACAAACTCTTT+TGG | + | chr1.4:49723044-49723063 | None:intergenic | 35.0% |
! | AATTGACGGATGGAATTGTT+AGG | - | chr1.4:49722604-49722623 | MS.gene72309:CDS | 35.0% |
AAGCAAAAGGGTTAGGGTTA+GGG | + | chr1.4:49721794-49721813 | None:intergenic | 40.0% | |
AGTTGATCTTGACAAGGGTT+AGG | + | chr1.4:49721576-49721595 | None:intergenic | 40.0% | |
ATCTCTGCTGTGTTCATCTT+TGG | + | chr1.4:49721981-49722000 | None:intergenic | 40.0% | |
CAAAGGAAGCAAAAGGGTTA+GGG | + | chr1.4:49721800-49721819 | None:intergenic | 40.0% | |
CTACCTCAAAGGAAGCAAAA+GGG | + | chr1.4:49721806-49721825 | None:intergenic | 40.0% | |
CTGTTTCAGACCCTTAAGAA+TGG | + | chr1.4:49723099-49723118 | None:intergenic | 40.0% | |
GAGTTCAAAAGCTCTTGTTG+TGG | + | chr1.4:49721738-49721757 | None:intergenic | 40.0% | |
GTTGATCTTGACAAGGGTTA+GGG | + | chr1.4:49721575-49721594 | None:intergenic | 40.0% | |
TCAAAGGAAGCAAAAGGGTT+AGG | + | chr1.4:49721801-49721820 | None:intergenic | 40.0% | |
TCTACCTCAAAGGAAGCAAA+AGG | + | chr1.4:49721807-49721826 | None:intergenic | 40.0% | |
TTCAGACCCTTAAGAATGGT+AGG | + | chr1.4:49723095-49723114 | None:intergenic | 40.0% | |
TTGTGTAGATCTTCACTTGG+AGG | + | chr1.4:49722963-49722982 | None:intergenic | 40.0% | |
! | GAGAGTGTGTGTTAAGGAAA+CGG | - | chr1.4:49722684-49722703 | MS.gene72309:CDS | 40.0% |
! | TAACCCTTTTGCTTCCTTTG+AGG | - | chr1.4:49721800-49721819 | MS.gene72309:intron | 40.0% |
! | TAGCATAGCTTTTGGCGTTT+TGG | + | chr1.4:49721696-49721715 | None:intergenic | 40.0% |
!! | GTGAGAAGAAAGTTGGTGAA+AGG | - | chr1.4:49721865-49721884 | MS.gene72309:intron | 40.0% |
!! | TTTGGCGTTTTGGACATGTA+AGG | + | chr1.4:49721686-49721705 | None:intergenic | 40.0% |
ACTGAGAAGACACAAGAGCT+TGG | - | chr1.4:49721936-49721955 | MS.gene72309:intron | 45.0% | |
AGCAAAGGGTTCTACCTCAA+AGG | + | chr1.4:49721817-49721836 | None:intergenic | 45.0% | |
ATGCTACGAGGAGAAAAGAG+AGG | - | chr1.4:49721710-49721729 | MS.gene72309:intron | 45.0% | |
CTGAGAAGACACAAGAGCTT+GGG | - | chr1.4:49721937-49721956 | MS.gene72309:intron | 45.0% | |
GAAGCAAAAGGGTTAGGGTT+AGG | + | chr1.4:49721795-49721814 | None:intergenic | 45.0% | |
TGTAGATCTTCACTTGGAGG+AGG | + | chr1.4:49722960-49722979 | None:intergenic | 45.0% | |
! | GAGAGAGAGAGTGTGTGTTA+AGG | - | chr1.4:49722678-49722697 | MS.gene72309:CDS | 45.0% |
! | TCTCCTCGTAGCATAGCTTT+TGG | + | chr1.4:49721704-49721723 | None:intergenic | 45.0% |
ACGCCAAAAGCTATGCTACG+AGG | - | chr1.4:49721698-49721717 | MS.gene72309:intron | 50.0% | |
GACACAAGAGCTTGGGAAGT+TGG | - | chr1.4:49721944-49721963 | MS.gene72309:intron | 50.0% | |
GTGTTCATCTTTGGTCCACC+AGG | + | chr1.4:49721972-49721991 | None:intergenic | 50.0% | |
! | AAGGGTCTGAAACAGCTTGC+TGG | - | chr1.4:49723104-49723123 | MS.gene72309:CDS | 50.0% |
! | AGGGTCTGAAACAGCTTGCT+GGG | - | chr1.4:49723105-49723124 | MS.gene72309:CDS | 50.0% |
!! | TATCTCGTCGCAGAGTATCG+CGG | - | chr1.4:49721890-49721909 | MS.gene72309:intron | 50.0% |
! | CTTGGGAAGTTGGTTCCTGG+TGG | - | chr1.4:49721954-49721973 | MS.gene72309:intron | 55.0% |
! | GAGCTTGGGAAGTTGGTTCC+TGG | - | chr1.4:49721951-49721970 | MS.gene72309:intron | 55.0% |
!! | AGAGTATCGCGGCGAGAGAA+AGG | - | chr1.4:49721901-49721920 | MS.gene72309:intron | 55.0% |
TCGCGGCGAGAGAAAGGAGA+AGG | - | chr1.4:49721907-49721926 | MS.gene72309:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 49721357 | 49723160 | 49721357 | ID=MS.gene72309 |
chr1.4 | mRNA | 49721357 | 49723160 | 49721357 | ID=MS.gene72309.t1;Parent=MS.gene72309 |
chr1.4 | exon | 49722438 | 49723160 | 49722438 | ID=MS.gene72309.t1.exon1;Parent=MS.gene72309.t1 |
chr1.4 | CDS | 49722438 | 49723160 | 49722438 | ID=cds.MS.gene72309.t1;Parent=MS.gene72309.t1 |
chr1.4 | exon | 49721357 | 49721572 | 49721357 | ID=MS.gene72309.t1.exon2;Parent=MS.gene72309.t1 |
chr1.4 | CDS | 49721357 | 49721572 | 49721357 | ID=cds.MS.gene72309.t1;Parent=MS.gene72309.t1 |
Gene Sequence |
Protein sequence |