AlfalfaGEDB | MS.gene72494

M. sativa cultivar XinJiangDaYe / MS.gene72494

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72494.t1	TKY57837.1	48.5	171	82	3	4	168	9	179	1.20E-36	163.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72494.t1	Q9FFI5	33.5	158	81	8	4	145	6	155	3.9e-12	73.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72494.t1	A0A4D6MC66	48.1	162	77	3	4	158	9	170	1.5e-33	152.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene72494.t1	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72494.t1	MTR_1g047060	51.064	94	39	2	109	200	1	89	5.97e-23	88.6
MS.gene72494.t1	MTR_7g105170	29.885	174	98	7	1	152	1	172	4.43e-17	77.4
MS.gene72494.t1	MTR_6g477900	32.386	176	89	8	4	165	6	165	2.36e-16	75.1
MS.gene72494.t1	MTR_1g096430	30.769	156	92	5	4	148	7	157	7.82e-16	75.1
MS.gene72494.t1	MTR_5g012080	31.210	157	86	6	4	145	7	156	2.24e-15	73.9
MS.gene72494.t1	MTR_2g062730	30.769	156	87	5	4	145	10	158	4.42e-15	72.8
MS.gene72494.t1	MTR_8g023840	32.903	155	82	8	4	145	11	156	4.52e-15	73.2
MS.gene72494.t1	MTR_2g086880	31.081	148	83	6	6	144	20	157	4.68e-15	73.6
MS.gene72494.t1	MTR_2g086880	31.081	148	83	6	6	144	20	157	5.27e-15	73.2
MS.gene72494.t1	MTR_7g100990	34.161	161	77	9	4	144	11	162	6.87e-15	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72494.t1	AT2G27300	31.724	145	90	4	4	144	14	153	1.05e-17	80.1
MS.gene72494.t1	AT4G36160	33.117	154	85	6	4	145	14	161	3.87e-16	76.3
MS.gene72494.t1	AT4G36160	33.117	154	85	6	4	145	10	157	3.88e-16	76.3
MS.gene72494.t1	AT4G36160	33.117	154	85	6	4	145	10	157	3.88e-16	76.3
MS.gene72494.t1	AT2G24430	34.395	157	83	7	2	145	14	163	4.73e-16	75.5
MS.gene72494.t1	AT2G24430	34.395	157	83	7	2	145	14	163	4.73e-16	75.5
MS.gene72494.t1	AT1G71930	31.410	156	91	5	4	148	9	159	7.00e-16	75.1
MS.gene72494.t1	AT1G71930	31.410	156	91	5	4	148	9	159	7.00e-16	75.1
MS.gene72494.t1	AT3G44290	31.081	148	83	6	6	144	16	153	7.82e-16	73.6
MS.gene72494.t1	AT1G62700	32.692	156	83	7	4	145	7	154	2.68e-15	73.9

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Find 48 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCGGCAAACAACAAA+AGG	0.449123	4.2:+69246781	None:intergenic
AACAAGGAGCTCATCTGAAG+GGG	0.618835	4.2:+69247269	None:intergenic
AAGGAACTCAGCAACTTAAG+CGG	0.627875	4.2:-69246657	MS.gene72494:CDS
ACCTTCATCGACATCAGAAA+AGG	0.512248	4.2:+69246717	None:intergenic
ACTCAGCAACTTAAGCGGGC+TGG	0.460490	4.2:-69246652	MS.gene72494:CDS
AGAACGCGATCAAAACTAGC+TGG	0.546737	4.2:-69246951	MS.gene72494:CDS
AGAGGAGGCATTGTAAGATT+GGG	0.450614	4.2:-69247074	MS.gene72494:CDS
AGGAACTCAGCAACTTAAGC+GGG	0.556951	4.2:-69246656	MS.gene72494:CDS
AGGAGTGGCTTGAGTAGCCA+TGG	0.558328	4.2:+69246591	None:intergenic
AGGCTATGCATCGCATTCCA+TGG	0.571087	4.2:-69246608	MS.gene72494:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAAGTTCAGCTCCTTAATC+AGG	+	chr4.2:69246701-69246720	None:intergenic	35.0%
GAAGAGGTTCAGAATTTCAA+TGG	-	chr4.2:69246669-69246688	MS.gene72494:CDS	35.0%
TGAAGCAGTAAAATTCCCTT+GGG	+	chr4.2:69246776-69246795	None:intergenic	35.0%
TGCCAACAAAAACAATGAAG+AGG	-	chr4.2:69246653-69246672	MS.gene72494:CDS	35.0%
AAAACGCGGCAAACAACAAA+AGG	+	chr4.2:69247110-69247129	None:intergenic	40.0%
AAGGAACTCAGCAACTTAAG+CGG	-	chr4.2:69247231-69247250	MS.gene72494:CDS	40.0%
ACCTTCATCGACATCAGAAA+AGG	+	chr4.2:69247174-69247193	None:intergenic	40.0%
AGTAAAATTCCCTTGGGTGA+CGG	+	chr4.2:69246770-69246789	None:intergenic	40.0%
ATGGATCTGGACTCTGAATT+TGG	-	chr4.2:69247146-69247165	MS.gene72494:CDS	40.0%
GGACTAAGAGGCAATTCTAA+TGG	+	chr4.2:69246735-69246754	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	69246588	69247322	69246588	ID=MS.gene72494
chr4.2	mRNA	69246588	69247322	69246588	ID=MS.gene72494.t1;Parent=MS.gene72494
chr4.2	exon	69246915	69247322	69246915	ID=MS.gene72494.t1.exon1;Parent=MS.gene72494.t1
chr4.2	CDS	69246915	69247322	69246915	ID=cds.MS.gene72494.t1;Parent=MS.gene72494.t1
chr4.2	exon	69246588	69246806	69246588	ID=MS.gene72494.t1.exon2;Parent=MS.gene72494.t1
chr4.2	CDS	69246588	69246806	69246588	ID=cds.MS.gene72494.t1;Parent=MS.gene72494.t1

Gene Sequence

>MS.gene72494

ATGGAATTCCTTCCACCTGGTGTTGGCTTCGCCCCTTCAGATGAGCTCCTTGTTAGCTACTACCTTGCCAACAAAAACAATGAAGAGGTTCAGAATTTCAATGGTTCTGACCTGATTAAGGAGCTGAACTTATACCAGTATGATCCATTAGAATTGCCTCTTAGTCCATCATTTTTCTTCCGTCACCCAAGGGAATTTTACTGCTTCACTGCCAAAGTTGATGAGCAGAGGAGGCATTGTAAGATTGGGTTTTGGATGCGTAAGGGAGTTGTTCGAGACATTTGTGGAGTTGATAACGTGGTTGTGGGAAAGAAGTCTCTTTTTATGTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTCAGGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAAGTTTCCATATGTTCATTATTTCATCGATGATTAATTTATGTATTGGTAACGACAAACTTTTTTTTTTAATATAAATAATTATGCAGGCTCCTTTTGTTGTTTGCCGCGTTTTTGACTGCCCTAGAGGGATGGATCTGGACTCTGAATTTGGAGCCTTTTCTGATGTCGATGAAGGTGATGCTGCTGATGACGACTTCGATGACAAGGCGAATGAAGGAACTCAGCAACTTAAGCGGGCTGGGGCTGGTTCTAGTGCTGAGCAAGGCTATGCATCGCATTCCATGGCTACTCAAGCCACTCCTTAG

Protein sequence

>MS.gene72494.t1

MEFLPPGVGFAPSDELLVSYYLANKNNEEVQNFNGSDLIKELNLYQYDPLELPLSPSFFFRHPREFYCFTAKVDEQRRHCKIGFWMRKGVVRDICGVDNVVVGKKSLFMFYIGNSPQNAIKTSWTMYEYTQVNNPQAPFVVCRVFDCPRGMDLDSEFGAFSDVDEGDAADDDFDDKANEGTQQLKRAGAGSSAEQGYASHSMATQATP