AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72637

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72637.t1 MTR_5g023910 93.966 232 13 1 1 231 1 232 7.92e-148 412
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72637.t1 AT4G35700 32.609 184 103 8 75 245 98 273 5.32e-17 78.6
MS.gene72637.t1 AT4G35610 54.000 50 23 0 106 155 129 178 2.65e-13 68.2

Find 97 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTTTCATCATCCTCTTC+TGG 0.204274 5.4:-15386496 None:intergenic
GTGGCTGGTGTGGTGTTGTT+TGG 0.232681 5.4:-15385087 None:intergenic
GCCGGTGCAGGTGCTGGTGC+AGG 0.272031 5.4:-15386421 None:intergenic
GCATCCAGAGCGTGCTCATC+GGG 0.273262 5.4:+15385464 MS.gene72637:CDS
GAAAACTCCCTCTTGCATTC+TGG 0.285785 5.4:-15385408 None:intergenic
TCTTGCATTCTGGACATGTT+GGG 0.316539 5.4:-15385398 None:intergenic
GTGCAGGGGCAGGTGCTGCT+TGG 0.330759 5.4:-15386405 None:intergenic
GCAGGTGCTGGTGCAGGGGC+AGG 0.335313 5.4:-15386415 None:intergenic
CAGATGAACCGTCAGCGGTT+AGG 0.349357 5.4:-15385296 None:intergenic
TGGCTGGTGTGGTGTTGTTT+GGG 0.349412 5.4:-15385086 None:intergenic
TTCGCAGCCGGTGCAGGTGC+TGG 0.355655 5.4:-15386427 None:intergenic
CTCTTGCATTCTGGACATGT+TGG 0.358689 5.4:-15385399 None:intergenic
AGATGAACCGTCAGCGGTTA+GGG 0.361767 5.4:-15385295 None:intergenic
GTTGTTTGGGCTTGACTCAT+TGG 0.370557 5.4:-15385073 None:intergenic
TACCCTCATCACCACCATTT+GGG 0.382708 5.4:-15385233 None:intergenic
CAGAGGACCCTGCGGTTGAT+TGG 0.396020 5.4:-15386351 None:intergenic
CTGATGGAGGGTCTTTCACT+TGG 0.398758 5.4:-15385371 None:intergenic
TCCACATGGAAAGCTGCGTT+TGG 0.405623 5.4:+15385429 MS.gene72637:CDS
TCTTCATTCGCAGCCGGTGC+AGG 0.409609 5.4:-15386433 None:intergenic
TTACCCTCATCACCACCATT+TGG 0.414014 5.4:-15385234 None:intergenic
TTTGGGCTTGACTCATTGGC+AGG 0.414848 5.4:-15385069 None:intergenic
GGGTCCTCTGCTGGTGGTAG+TGG 0.416926 5.4:+15386364 MS.gene72637:CDS
GACCATCAGAACCAACTTGT+TGG 0.436035 5.4:-15385323 None:intergenic
ATCATCATCATCAGTTAGTT+CGG 0.443434 5.4:-15385205 None:intergenic
TCCTCAGTGTTTGTCACAGC+GGG 0.444401 5.4:-15385147 None:intergenic
TCATCATCCTCTTCTGGAGG+TGG 0.459723 5.4:-15386490 None:intergenic
ATGGTCATGTCTTCAAGAAA+AGG 0.461097 5.4:+15385340 MS.gene72637:CDS
GTTCAGCCAAGGTGCGTTGA+GGG 0.469269 5.4:-15385113 None:intergenic
TTGTTTACAGGTGATGGTCT+TGG 0.469520 5.4:+15386262 MS.gene72637:intron
ATCCAACAAGTTGGTTCTGA+TGG 0.472826 5.4:+15385321 MS.gene72637:CDS
CCGGTGCAGGTGCTGGTGCA+GGG 0.473450 5.4:-15386420 None:intergenic
CAAGGTGCGTTGAGGGGAAG+TGG 0.482830 5.4:-15385106 None:intergenic
TCAACCGCAGGGTCCTCTGC+TGG 0.483755 5.4:+15386355 MS.gene72637:CDS
TATATACCCTCAGCAGGAAC+GGG 0.491670 5.4:-15385522 None:intergenic
CGTCTTTCTTCATTCGCAGC+CGG 0.495573 5.4:-15386439 None:intergenic
GAATGAAGAAAGACGGAGAC+GGG 0.497570 5.4:+15386447 MS.gene72637:CDS
CACTTCCCCTCAACGCACCT+TGG 0.498843 5.4:+15385107 MS.gene72637:CDS
GAAAACACCGGAGGAAGTCC+TGG 0.499910 5.4:+15385182 MS.gene72637:CDS
CATGTTGGGGATCCTGATGG+AGG 0.503638 5.4:-15385384 None:intergenic
CCCTGCACCAGCACCTGCAC+CGG 0.503722 5.4:+15386420 MS.gene72637:CDS
GGACATGTTGGGGATCCTGA+TGG 0.504468 5.4:-15385387 None:intergenic
CTTGCATTCTGGACATGTTG+GGG 0.506162 5.4:-15385397 None:intergenic
CAAGTGAAAGACCCTCCATC+AGG 0.513855 5.4:+15385372 MS.gene72637:CDS
GTGCGTTGAGGGGAAGTGGC+TGG 0.516360 5.4:-15385102 None:intergenic
CTTGGCGACAAGATCAATGA+AGG 0.517419 5.4:+15386280 MS.gene72637:CDS
AGCATCCAGAGCGTGCTCAT+CGG 0.517955 5.4:+15385463 MS.gene72637:CDS
CGTTGCACCCGTTCCTGCTG+AGG 0.526903 5.4:+15385515 MS.gene72637:CDS
GTCATATATATACCCTCAGC+AGG 0.528765 5.4:-15385528 None:intergenic
CGGTGCAGGTGCTGGTGCAG+GGG 0.533091 5.4:-15386419 None:intergenic
GATGATGATTTGATCCCAAA+TGG 0.535324 5.4:+15385219 MS.gene72637:CDS
TCATCTGTTATCCAACAAGT+TGG 0.537358 5.4:+15385312 MS.gene72637:CDS
GTTTCATCATCCTCTTCTGG+AGG 0.539642 5.4:-15386493 None:intergenic
CATCATCAGTTAGTTCGGCC+AGG 0.545384 5.4:-15385200 None:intergenic
ATGTTGGGGATCCTGATGGA+GGG 0.546248 5.4:-15385383 None:intergenic
ATATATACCCTCAGCAGGAA+CGG 0.547737 5.4:-15385523 None:intergenic
AGTTCGGCCAGGACTTCCTC+CGG 0.548973 5.4:-15385189 None:intergenic
TTGAGGGGAAGTGGCTGGTG+TGG 0.560312 5.4:-15385097 None:intergenic
AGATCGATCCAATCAACCGC+AGG 0.563542 5.4:+15386343 MS.gene72637:CDS
CGAGTTGCCACCTCCAGAAG+AGG 0.565350 5.4:+15386483 MS.gene72637:CDS
GGTGCAACGGTGCTAAAAGT+TGG 0.571929 5.4:-15385501 None:intergenic
AGGGTAACGAAGAAGACGAT+GGG 0.573776 5.4:+15385250 MS.gene72637:CDS
CTCAGCAGGAACGGGTGCAA+CGG 0.574361 5.4:-15385514 None:intergenic
GTTGCACCCGTTCCTGCTGA+GGG 0.581395 5.4:+15385516 MS.gene72637:CDS
TCAGTGTTTGTCACAGCGGG+TGG 0.591498 5.4:-15385144 None:intergenic
GCAACGGTGCTAAAAGTTGG+TGG 0.591524 5.4:-15385498 None:intergenic
ACCGCAGGGTCCTCTGCTGG+TGG 0.592667 5.4:+15386358 MS.gene72637:CDS
CATGTCTTCAAGAAAAGGAA+AGG 0.594271 5.4:+15385345 MS.gene72637:CDS
ATCCAGAGCGTGCTCATCGG+GGG 0.598304 5.4:+15385466 MS.gene72637:CDS
ACGGTGCTAAAAGTTGGTGG+AGG 0.599469 5.4:-15385495 None:intergenic
TTCAGCCAAGGTGCGTTGAG+GGG 0.602294 5.4:-15385112 None:intergenic
TTGGGCTTGACTCATTGGCA+GGG 0.602976 5.4:-15385068 None:intergenic
TGTTCAGCCAAGGTGCGTTG+AGG 0.606127 5.4:-15385114 None:intergenic
ATCCCAAATGGTGGTGATGA+GGG 0.607792 5.4:+15385231 MS.gene72637:CDS
CAACATGTCCAGAATGCAAG+AGG 0.611183 5.4:+15385400 MS.gene72637:CDS
TGGCTGATCATGTTCAGCCA+AGG 0.612094 5.4:-15385124 None:intergenic
TGGTAGTGGTCATATCACTA+AGG 0.615054 5.4:+15386378 MS.gene72637:CDS
GTTATCGCCCTAACCGCTGA+CGG 0.623365 5.4:+15385288 MS.gene72637:CDS
TTGGCGACAAGATCAATGAA+GGG 0.623712 5.4:+15386281 MS.gene72637:CDS
GATCCCAAATGGTGGTGATG+AGG 0.627502 5.4:+15385230 MS.gene72637:CDS
ATCCTCAGTGTTTGTCACAG+CGG 0.628423 5.4:-15385148 None:intergenic
CGGCTGCGAATGAAGAAAGA+CGG 0.631768 5.4:+15386440 MS.gene72637:CDS
TGAAACCTTTCTGAAAACAC+CGG 0.634379 5.4:+15385170 MS.gene72637:CDS
CGGTGCTAAAAGTTGGTGGA+GGG 0.635586 5.4:-15385494 None:intergenic
GAGGGTAACGAAGAAGACGA+TGG 0.641669 5.4:+15385249 MS.gene72637:CDS
ATGACCACTACCACCAGCAG+AGG 0.645607 5.4:-15386368 None:intergenic
CGAATGAAGAAAGACGGAGA+CGG 0.650910 5.4:+15386446 MS.gene72637:CDS
CATCCAGAGCGTGCTCATCG+GGG 0.656726 5.4:+15385465 MS.gene72637:CDS
GATAACAGATGAACCGTCAG+CGG 0.657485 5.4:-15385301 None:intergenic
GATCGATCCAATCAACCGCA+GGG 0.660372 5.4:+15386344 MS.gene72637:CDS
TGGCGACAAGATCAATGAAG+GGG 0.669025 5.4:+15386282 MS.gene72637:CDS
TCCAAACGCAGCTTTCCATG+TGG 0.678013 5.4:-15385430 None:intergenic
AACATGTCCAGAATGCAAGA+GGG 0.691308 5.4:+15385401 MS.gene72637:CDS
AACCTTTCTGAAAACACCGG+AGG 0.706436 5.4:+15385173 MS.gene72637:CDS
ACCACCAGCAGAGGACCCTG+CGG 0.721168 5.4:-15386359 None:intergenic
GGGTAACGAAGAAGACGATG+GGG 0.737196 5.4:+15385251 MS.gene72637:CDS
GATGATTTGATCCCAAATGG+TGG 0.741325 5.4:+15385222 MS.gene72637:CDS
ACCCGCTGTGACAAACACTG+AGG 0.799006 5.4:+15385146 MS.gene72637:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAGATCTAAATCA+TGG - chr5.4:15385723-15385742 None:intergenic 15.0%
!! ATAAGACTATATATATAGTT+AGG - chr5.4:15385559-15385578 None:intergenic 15.0%
!! TAAGACTATATATATAGTTA+GGG - chr5.4:15385558-15385577 None:intergenic 15.0%
!!! TATTTTTGATGTTTTAGTTA+TGG + chr5.4:15385619-15385638 MS.gene72637:intron 15.0%
!! CTAAAACATTCAATTTGAAT+AGG - chr5.4:15385965-15385984 None:intergenic 20.0%
!!! AAAACATCTCAATTATCTTT+TGG - chr5.4:15385754-15385773 None:intergenic 20.0%
!!! AAATCATTTTGTTAAAAGAG+TGG - chr5.4:15386104-15386123 None:intergenic 20.0%
!!! TTAGAGTTTTATGAAAAGTA+TGG + chr5.4:15385693-15385712 MS.gene72637:intron 20.0%
ATAAAGCACACACTCATATA+AGG - chr5.4:15386227-15386246 None:intergenic 30.0%
ATCATCATCATCAGTTAGTT+CGG - chr5.4:15385208-15385227 None:intergenic 30.0%
TTACGTCGTTAATTGTTTAC+AGG + chr5.4:15386250-15386269 MS.gene72637:intron 30.0%
! ACATCTCAATTATCTTTTGG+TGG - chr5.4:15385751-15385770 None:intergenic 30.0%
ATGGTCATGTCTTCAAGAAA+AGG + chr5.4:15385340-15385359 MS.gene72637:CDS 35.0%
CATGTCTTCAAGAAAAGGAA+AGG + chr5.4:15385345-15385364 MS.gene72637:CDS 35.0%
CGTTAATTGTTTACAGGTGA+TGG + chr5.4:15386256-15386275 MS.gene72637:intron 35.0%
GATGATGATTTGATCCCAAA+TGG + chr5.4:15385219-15385238 MS.gene72637:CDS 35.0%
TCATCTGTTATCCAACAAGT+TGG + chr5.4:15385312-15385331 MS.gene72637:CDS 35.0%
! TGAAACCTTTCTGAAAACAC+CGG + chr5.4:15385170-15385189 MS.gene72637:CDS 35.0%
AACATGTCCAGAATGCAAGA+GGG + chr5.4:15385401-15385420 MS.gene72637:CDS 40.0%
ATATATACCCTCAGCAGGAA+CGG - chr5.4:15385526-15385545 None:intergenic 40.0%
GATGATTTGATCCCAAATGG+TGG + chr5.4:15385222-15385241 MS.gene72637:CDS 40.0%
GTCATATATATACCCTCAGC+AGG - chr5.4:15385531-15385550 None:intergenic 40.0%
TCTGTTTCATCATCCTCTTC+TGG - chr5.4:15386499-15386518 None:intergenic 40.0%
TCTTGCATTCTGGACATGTT+GGG - chr5.4:15385401-15385420 None:intergenic 40.0%
TTGGCGACAAGATCAATGAA+GGG + chr5.4:15386281-15386300 MS.gene72637:CDS 40.0%
! TTGTTTACAGGTGATGGTCT+TGG + chr5.4:15386262-15386281 MS.gene72637:intron 40.0%
!! ATCCAACAAGTTGGTTCTGA+TGG + chr5.4:15385321-15385340 MS.gene72637:CDS 40.0%
!! TGGTAGTGGTCATATCACTA+AGG + chr5.4:15386378-15386397 MS.gene72637:CDS 40.0%
AGGGTAACGAAGAAGACGAT+GGG + chr5.4:15385250-15385269 MS.gene72637:CDS 45.0%
ATCCTCAGTGTTTGTCACAG+CGG - chr5.4:15385151-15385170 None:intergenic 45.0%
CAACATGTCCAGAATGCAAG+AGG + chr5.4:15385400-15385419 MS.gene72637:CDS 45.0%
CGAATGAAGAAAGACGGAGA+CGG + chr5.4:15386446-15386465 MS.gene72637:CDS 45.0%
CTCTTGCATTCTGGACATGT+TGG - chr5.4:15385402-15385421 None:intergenic 45.0%
CTTGCATTCTGGACATGTTG+GGG - chr5.4:15385400-15385419 None:intergenic 45.0%
CTTGGCGACAAGATCAATGA+AGG + chr5.4:15386280-15386299 MS.gene72637:CDS 45.0%
GAAAACTCCCTCTTGCATTC+TGG - chr5.4:15385411-15385430 None:intergenic 45.0%
GAATGAAGAAAGACGGAGAC+GGG + chr5.4:15386447-15386466 MS.gene72637:CDS 45.0%
GACCATCAGAACCAACTTGT+TGG - chr5.4:15385326-15385345 None:intergenic 45.0%
GATAACAGATGAACCGTCAG+CGG - chr5.4:15385304-15385323 None:intergenic 45.0%
GTTGTTTGGGCTTGACTCAT+TGG - chr5.4:15385076-15385095 None:intergenic 45.0%
GTTTCATCATCCTCTTCTGG+AGG - chr5.4:15386496-15386515 None:intergenic 45.0%
TACCCTCATCACCACCATTT+GGG - chr5.4:15385236-15385255 None:intergenic 45.0%
TATATACCCTCAGCAGGAAC+GGG - chr5.4:15385525-15385544 None:intergenic 45.0%
TGGCGACAAGATCAATGAAG+GGG + chr5.4:15386282-15386301 MS.gene72637:CDS 45.0%
TTACCCTCATCACCACCATT+TGG - chr5.4:15385237-15385256 None:intergenic 45.0%
! AACCTTTCTGAAAACACCGG+AGG + chr5.4:15385173-15385192 MS.gene72637:CDS 45.0%
! AAGAAGACGATGGGGCTTTT+AGG + chr5.4:15385259-15385278 MS.gene72637:CDS 45.0%
! ATCCCAAATGGTGGTGATGA+GGG + chr5.4:15385231-15385250 MS.gene72637:CDS 45.0%
! TTCCTCCGGTGTTTTCAGAA+AGG - chr5.4:15385178-15385197 None:intergenic 45.0%
!! AAAAAATCTAAAAATTATTT+AGG + chr5.4:15385828-15385847 MS.gene72637:intron 5.0%
!! AAAAATCTAAAAATTATTTA+GGG + chr5.4:15385829-15385848 MS.gene72637:intron 5.0%
AGATCGATCCAATCAACCGC+AGG + chr5.4:15386343-15386362 MS.gene72637:CDS 50.0%
AGATGAACCGTCAGCGGTTA+GGG - chr5.4:15385298-15385317 None:intergenic 50.0%
ATGTTGGGGATCCTGATGGA+GGG - chr5.4:15385386-15385405 None:intergenic 50.0%
CAAGTGAAAGACCCTCCATC+AGG + chr5.4:15385372-15385391 MS.gene72637:CDS 50.0%
CATCATCAGTTAGTTCGGCC+AGG - chr5.4:15385203-15385222 None:intergenic 50.0%
CGGCTGCGAATGAAGAAAGA+CGG + chr5.4:15386440-15386459 MS.gene72637:CDS 50.0%
CGTCTTTCTTCATTCGCAGC+CGG - chr5.4:15386442-15386461 None:intergenic 50.0%
CTGATGGAGGGTCTTTCACT+TGG - chr5.4:15385374-15385393 None:intergenic 50.0%
GAGGGTAACGAAGAAGACGA+TGG + chr5.4:15385249-15385268 MS.gene72637:CDS 50.0%
GATCGATCCAATCAACCGCA+GGG + chr5.4:15386344-15386363 MS.gene72637:CDS 50.0%
GGGTAACGAAGAAGACGATG+GGG + chr5.4:15385251-15385270 MS.gene72637:CDS 50.0%
TCCAAACGCAGCTTTCCATG+TGG - chr5.4:15385433-15385452 None:intergenic 50.0%
TCCACATGGAAAGCTGCGTT+TGG + chr5.4:15385429-15385448 MS.gene72637:CDS 50.0%
TCCTCAGTGTTTGTCACAGC+GGG - chr5.4:15385150-15385169 None:intergenic 50.0%
TGGCTGATCATGTTCAGCCA+AGG - chr5.4:15385127-15385146 None:intergenic 50.0%
TTGGGCTTGACTCATTGGCA+GGG - chr5.4:15385071-15385090 None:intergenic 50.0%
TTTGGGCTTGACTCATTGGC+AGG - chr5.4:15385072-15385091 None:intergenic 50.0%
! GATCCCAAATGGTGGTGATG+AGG + chr5.4:15385230-15385249 MS.gene72637:CDS 50.0%
! GCAACGGTGCTAAAAGTTGG+TGG - chr5.4:15385501-15385520 None:intergenic 50.0%
! GCAAGAGGGAGTTTTCCACA+TGG + chr5.4:15385415-15385434 MS.gene72637:CDS 50.0%
! GGTGCAACGGTGCTAAAAGT+TGG - chr5.4:15385504-15385523 None:intergenic 50.0%
! TCATCATCCTCTTCTGGAGG+TGG - chr5.4:15386493-15386512 None:intergenic 50.0%
!! ACGGTGCTAAAAGTTGGTGG+AGG - chr5.4:15385498-15385517 None:intergenic 50.0%
!! CGGTGCTAAAAGTTGGTGGA+GGG - chr5.4:15385497-15385516 None:intergenic 50.0%
!! TGGCTGGTGTGGTGTTGTTT+GGG - chr5.4:15385089-15385108 None:intergenic 50.0%
ACCCGCTGTGACAAACACTG+AGG + chr5.4:15385146-15385165 MS.gene72637:CDS 55.0%
AGCATCCAGAGCGTGCTCAT+CGG + chr5.4:15385463-15385482 MS.gene72637:CDS 55.0%
ATGACCACTACCACCAGCAG+AGG - chr5.4:15386371-15386390 None:intergenic 55.0%
CAGATGAACCGTCAGCGGTT+AGG - chr5.4:15385299-15385318 None:intergenic 55.0%
CATGTTGGGGATCCTGATGG+AGG - chr5.4:15385387-15385406 None:intergenic 55.0%
GAAAACACCGGAGGAAGTCC+TGG + chr5.4:15385182-15385201 MS.gene72637:CDS 55.0%
GGACATGTTGGGGATCCTGA+TGG - chr5.4:15385390-15385409 None:intergenic 55.0%
GTTATCGCCCTAACCGCTGA+CGG + chr5.4:15385288-15385307 MS.gene72637:CDS 55.0%
GTTCAGCCAAGGTGCGTTGA+GGG - chr5.4:15385116-15385135 None:intergenic 55.0%
TCAGTGTTTGTCACAGCGGG+TGG - chr5.4:15385147-15385166 None:intergenic 55.0%
TGTTCAGCCAAGGTGCGTTG+AGG - chr5.4:15385117-15385136 None:intergenic 55.0%
TTCAGCCAAGGTGCGTTGAG+GGG - chr5.4:15385115-15385134 None:intergenic 55.0%
!! GTGGCTGGTGTGGTGTTGTT+TGG - chr5.4:15385090-15385109 None:intergenic 55.0%
!!! CGATGGGGCTTTTAGGACGA+TGG + chr5.4:15385266-15385285 MS.gene72637:CDS 55.0%
AGTTCGGCCAGGACTTCCTC+CGG - chr5.4:15385192-15385211 None:intergenic 60.0%
ATCCAGAGCGTGCTCATCGG+GGG + chr5.4:15385466-15385485 MS.gene72637:CDS 60.0%
CAAGGTGCGTTGAGGGGAAG+TGG - chr5.4:15385109-15385128 None:intergenic 60.0%
CACTTCCCCTCAACGCACCT+TGG + chr5.4:15385107-15385126 MS.gene72637:CDS 60.0%
CAGAGGACCCTGCGGTTGAT+TGG - chr5.4:15386354-15386373 None:intergenic 60.0%
CATCCAGAGCGTGCTCATCG+GGG + chr5.4:15385465-15385484 MS.gene72637:CDS 60.0%
CGAGTTGCCACCTCCAGAAG+AGG + chr5.4:15386483-15386502 MS.gene72637:CDS 60.0%
CTCAGCAGGAACGGGTGCAA+CGG - chr5.4:15385517-15385536 None:intergenic 60.0%
GCATCCAGAGCGTGCTCATC+GGG + chr5.4:15385464-15385483 MS.gene72637:CDS 60.0%
GTTGCACCCGTTCCTGCTGA+GGG + chr5.4:15385516-15385535 MS.gene72637:CDS 60.0%
TCTTCATTCGCAGCCGGTGC+AGG - chr5.4:15386436-15386455 None:intergenic 60.0%
TTGAGGGGAAGTGGCTGGTG+TGG - chr5.4:15385100-15385119 None:intergenic 60.0%
AACCCCCGATGAGCACGCTC+TGG - chr5.4:15385471-15385490 None:intergenic 65.0%
ACCACCAGCAGAGGACCCTG+CGG - chr5.4:15386362-15386381 None:intergenic 65.0%
CGTTGCACCCGTTCCTGCTG+AGG + chr5.4:15385515-15385534 MS.gene72637:CDS 65.0%
GGGTCCTCTGCTGGTGGTAG+TGG + chr5.4:15386364-15386383 MS.gene72637:CDS 65.0%
GTGCGTTGAGGGGAAGTGGC+TGG - chr5.4:15385105-15385124 None:intergenic 65.0%
TCAACCGCAGGGTCCTCTGC+TGG + chr5.4:15386355-15386374 MS.gene72637:CDS 65.0%
ACCGCAGGGTCCTCTGCTGG+TGG + chr5.4:15386358-15386377 MS.gene72637:CDS 70.0%
CCCTGCACCAGCACCTGCAC+CGG + chr5.4:15386420-15386439 MS.gene72637:CDS 70.0%
TTCGCAGCCGGTGCAGGTGC+TGG - chr5.4:15386430-15386449 None:intergenic 70.0%
!! CCGGTGCAGGTGCTGGTGCA+GGG - chr5.4:15386423-15386442 None:intergenic 70.0%
!! CGGTGCAGGTGCTGGTGCAG+GGG - chr5.4:15386422-15386441 None:intergenic 70.0%
!! GTGCAGGGGCAGGTGCTGCT+TGG - chr5.4:15386408-15386427 None:intergenic 70.0%
!! GCAGGTGCTGGTGCAGGGGC+AGG - chr5.4:15386418-15386437 None:intergenic 75.0%
!! GCCGGTGCAGGTGCTGGTGC+AGG - chr5.4:15386424-15386443 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 15385057 15386528 15385057 ID=MS.gene72637
chr5.4 mRNA 15385057 15386528 15385057 ID=MS.gene72637.t1;Parent=MS.gene72637
chr5.4 exon 15385057 15385537 15385057 ID=MS.gene72637.t1.exon1;Parent=MS.gene72637.t1
chr5.4 CDS 15385057 15385537 15385057 ID=cds.MS.gene72637.t1;Parent=MS.gene72637.t1
chr5.4 exon 15386272 15386528 15386272 ID=MS.gene72637.t1.exon2;Parent=MS.gene72637.t1
chr5.4 CDS 15386272 15386528 15386272 ID=cds.MS.gene72637.t1;Parent=MS.gene72637.t1
Gene Sequence

>MS.gene72637

ATGGAAAACGTCCCTGCCAATGAGTCAAGCCCAAACAACACCACACCAGCCACTTCCCCTCAACGCACCTTGGCTGAACATGATCAGCCACCCGCTGTGACAAACACTGAGGATGAAACCTTTCTGAAAACACCGGAGGAAGTCCTGGCCGAACTAACTGATGATGATGATTTGATCCCAAATGGTGGTGATGAGGGTAACGAAGAAGACGATGGGGCTTTTAGGACGATGGTTATCGCCCTAACCGCTGACGGTTCATCTGTTATCCAACAAGTTGGTTCTGATGGTCATGTCTTCAAGAAAAGGAAAGGCAACCAAGTGAAAGACCCTCCATCAGGATCCCCAACATGTCCAGAATGCAAGAGGGAGTTTTCCACATGGAAAGCTGCGTTTGGACATATGCGCAAGCATCCAGAGCGTGCTCATCGGGGGTTTTTCCCTCCACCAACTTTTAGCACCGTTGCACCCGTTCCTGCTGAGGGTATATATATGACTAAACCCTAACTATATATATAGTCTTATTTTATAGATCTGAAAGTTTGTTTAAGATTTAAAAATAAATTATTTTTGATGTTTTAGTTATGGTTATGAGTGAAAGAATATTTAAAAAAAAAAAATCATTTTGATATAAATAATTTAGAGTTTTATGAAAAGTATGGTACTCCATGATTTAGATCTAATTTTTTTAGATCCACCAAAAGATAATTGAGATGTTTTAGTTGTTTAAAAAAAATATTTTTGATGTTTTAGCTATGTTTGTGTGTAATTTAAAAAAAATCTAAAAATTATTTAGGGATTATTTTTCAGAAACATTCAAGAAAAATATATTATGTTTTGTTTGTTTTAAATTGTAAAAAAGATTTTGTAAAAGTGATTTTCTTGAAAAGCTAATGAAAATAGCTTTTCCTATTCAAATTGAATGTTTTAGTGTTTAAGAAAAATATGTTATTTTGTGTTTGTCTAACTAAACTTAAAAAAAGAGATTTTATATTTCTCACTTATTTAAAAGCAAATAGAAATAGCTTTTCATTTTCAACATACAAACCACTCTTTTAACAAAATGATTTGAAAAAAACTTACGCACACAAACTTAATTAAATCATAAAGAATAATTTTTTACTAATCTTAAATAAACAAATCAGACTGATTAACAAATCAACTTTTTAACCTTATATGAGTGTGTGCTTTATTTGTTACGTCGTTAATTGTTTACAGGTGATGGTCTTGGCGACAAGATCAATGAAGGGGTGAGCTCATTAGCTCGCGAGCTTGTGTTCGATCTGAATAGATCGATCCAATCAACCGCAGGGTCCTCTGCTGGTGGTAGTGGTCATATCACTAAGGAAATCCAAGCAGCACCTGCCCCTGCACCAGCACCTGCACCGGCTGCGAATGAAGAAAGACGGAGACGGGACTTTGATCTGAACGAGTTGCCACCTCCAGAAGAGGATGATGAAACAGAAGAGAAATGA
Protein sequence

>MS.gene72637.t1

MENVPANESSPNNTTPATSPQRTLAEHDQPPAVTNTEDETFLKTPEEVLAELTDDDDLIPNGGDEGNEEDDGAFRTMVIALTADGSSVIQQVGSDGHVFKKRKGNQVKDPPSGSPTCPECKREFSTWKAAFGHMRKHPERAHRGFFPPPTFSTVAPVPAEGDGLGDKINEGVSSLARELVFDLNRSIQSTAGSSAGGSGHITKEIQAAPAPAPAPAPAANEERRRRDFDLNELPPPEEDDETEEK