Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72645.t1 | XP_003612350.1 | 94.2 | 312 | 17 | 1 | 1 | 312 | 20 | 330 | 1.80E-161 | 578.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72645.t1 | O81791 | 49.4 | 314 | 131 | 7 | 1 | 299 | 59 | 359 | 4.9e-67 | 256.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72645.t1 | G7K041 | 94.2 | 312 | 17 | 1 | 1 | 312 | 20 | 330 | 1.3e-161 | 578.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72645.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72645.t1 | MTR_5g024070 | 94.231 | 312 | 17 | 1 | 1 | 312 | 20 | 330 | 0.0 | 601 |
| MS.gene72645.t1 | MTR_3g435550 | 37.037 | 135 | 77 | 2 | 162 | 295 | 38 | 165 | 1.78e-23 | 95.5 |
| MS.gene72645.t1 | MTR_3g091700 | 38.400 | 125 | 59 | 2 | 171 | 295 | 148 | 254 | 1.02e-20 | 89.7 |
| MS.gene72645.t1 | MTR_3g104830 | 48.276 | 87 | 40 | 2 | 180 | 264 | 393 | 476 | 1.64e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72645.t1 | AT4G35590 | 50.968 | 310 | 122 | 9 | 1 | 294 | 9 | 304 | 1.83e-89 | 270 |
| MS.gene72645.t1 | AT4G35590 | 50.968 | 310 | 122 | 9 | 1 | 294 | 59 | 354 | 1.21e-88 | 270 |
| MS.gene72645.t1 | AT1G74480 | 46.087 | 115 | 57 | 2 | 180 | 292 | 131 | 242 | 8.31e-24 | 99.0 |
| MS.gene72645.t1 | AT1G18790 | 44.628 | 121 | 61 | 3 | 175 | 293 | 120 | 236 | 8.72e-24 | 98.6 |
| MS.gene72645.t1 | AT5G66990 | 42.727 | 110 | 59 | 2 | 187 | 295 | 164 | 270 | 1.85e-21 | 92.4 |
| MS.gene72645.t1 | AT5G53040 | 42.609 | 115 | 53 | 1 | 181 | 295 | 147 | 248 | 3.80e-21 | 90.9 |
| MS.gene72645.t1 | AT5G16100 | 50.000 | 64 | 32 | 0 | 174 | 237 | 346 | 409 | 1.64e-13 | 71.2 |
Find 59 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5.4:-15483788 | MS.gene72645:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5.4:-15483700 | MS.gene72645:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 5.4:-15485716 | MS.gene72645:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5.4:-15483638 | MS.gene72645:intron |
| TTGAGATCATTAAGCAGGTT+TGG | 0.348731 | 5.4:+15484305 | None:intergenic |
| TTCTTTGACGCTTCAGCAAT+TGG | 0.353848 | 5.4:+15483748 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5.4:+15484323 | None:intergenic |
| AGAAGACGAGTCTGAGTTAC+TGG | 0.356355 | 5.4:-15484132 | MS.gene72645:CDS |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5.4:-15484333 | MS.gene72645:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5.4:-15484234 | MS.gene72645:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5.4:+15485581 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 5.4:+15485705 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5.4:-15483678 | MS.gene72645:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5.4:-15485659 | MS.gene72645:CDS |
| TGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5.4:+15482877 | None:intergenic |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5.4:+15484239 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.396954 | 5.4:-15484177 | MS.gene72645:CDS |
| CATAGAGAAGAGGCCCTTCA+TGG | 0.404040 | 5.4:-15482998 | MS.gene72645:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5.4:+15485790 | None:intergenic |
| AAATTGAGACCAAGAGATTC+AGG | 0.445679 | 5.4:-15482969 | MS.gene72645:CDS |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5.4:-15483735 | MS.gene72645:CDS |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5.4:-15483025 | MS.gene72645:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5.4:-15483717 | MS.gene72645:CDS |
| TTGCCTTCTTATAACTGCCA+TGG | 0.468291 | 5.4:+15483047 | None:intergenic |
| AACATCTTGCCTGAATCTCT+TGG | 0.476779 | 5.4:+15482960 | None:intergenic |
| CTCAATTTGTATGTCCATGA+AGG | 0.479972 | 5.4:+15482984 | None:intergenic |
| TCAGACTCGTCTTCTTCAAA+AGG | 0.484709 | 5.4:+15484140 | None:intergenic |
| ACAGGCAAGACTATCTTTAG+TGG | 0.485270 | 5.4:+15484188 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5.4:-15483687 | MS.gene72645:CDS |
| TCATGTTGAGATCATTAAGC+AGG | 0.496279 | 5.4:+15484300 | None:intergenic |
| GCAGGAAGAGGCAAAACATC+AGG | 0.497528 | 5.4:-15483091 | MS.gene72645:intron |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.504221 | 5.4:+15484310 | None:intergenic |
| TATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5.4:-15483037 | MS.gene72645:CDS |
| GCAAGACTATCTTTAGTGGT+TGG | 0.512102 | 5.4:+15484192 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5.4:-15485787 | MS.gene72645:CDS |
| TCTCAACATGATATACAAGT+TGG | 0.522938 | 5.4:-15484288 | MS.gene72645:CDS |
| AATTGGCATATCAAAGTACT+TGG | 0.526594 | 5.4:+15483765 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5.4:+15483804 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5.4:+15485604 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5.4:-15484276 | MS.gene72645:CDS |
| ATCAGATGATGCTAATTGCT+AGG | 0.533299 | 5.4:+15482871 | None:intergenic |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5.4:-15483085 | MS.gene72645:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.549395 | 5.4:-15483736 | MS.gene72645:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5.4:+15485603 | None:intergenic |
| CAGCCATGGCAGTTATAAGA+AGG | 0.552518 | 5.4:-15483050 | MS.gene72645:CDS |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5.4:-15483086 | MS.gene72645:CDS |
| AAAAGGAAAACATAGAGAAG+AGG | 0.595516 | 5.4:-15483008 | MS.gene72645:CDS |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5.4:-15483064 | MS.gene72645:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5.4:+15483664 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.605314 | 5.4:+15484170 | None:intergenic |
| TCAATTTGTATGTCCATGAA+GGG | 0.616363 | 5.4:+15482985 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5.4:-15483082 | MS.gene72645:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5.4:-15484243 | MS.gene72645:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5.4:-15485798 | MS.gene72645:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5.4:-15484244 | MS.gene72645:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5.4:+15483797 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5.4:+15483673 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5.4:-15484230 | MS.gene72645:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5.4:-15485795 | MS.gene72645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAATAAATAAAAAAG+TGG | + | chr5.4:15485087-15485106 | None:intergenic | 10.0% |
| !! | TATACACTTAATTTATTAAT+AGG | - | chr5.4:15484712-15484731 | MS.gene72645:intron | 10.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | + | chr5.4:15483151-15483170 | None:intergenic | 15.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | + | chr5.4:15483150-15483169 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | - | chr5.4:15483178-15483197 | MS.gene72645:intron | 15.0% |
| !! | TAATTTATTAATAGGAATCA+TGG | - | chr5.4:15484720-15484739 | MS.gene72645:intron | 15.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | - | chr5.4:15484904-15484923 | MS.gene72645:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | + | chr5.4:15483659-15483678 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | + | chr5.4:15483733-15483752 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | - | chr5.4:15485268-15485287 | MS.gene72645:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | - | chr5.4:15483177-15483196 | MS.gene72645:intron | 20.0% |
| !! | TAAATTAAGTGTATAAAGCT+AGG | + | chr5.4:15484707-15484726 | None:intergenic | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | + | chr5.4:15483734-15483753 | None:intergenic | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | + | chr5.4:15485243-15485262 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | + | chr5.4:15485493-15485512 | None:intergenic | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | + | chr5.4:15485394-15485413 | None:intergenic | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | - | chr5.4:15484301-15484320 | MS.gene72645:CDS | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | - | chr5.4:15483918-15483937 | MS.gene72645:intron | 20.0% |
| !!! | TTGAAAAACAGAATTTTCTA+CGG | - | chr5.4:15485783-15485802 | MS.gene72645:CDS | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | - | chr5.4:15484862-15484881 | MS.gene72645:intron | 20.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | + | chr5.4:15483876-15483895 | None:intergenic | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | + | chr5.4:15484898-15484917 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | - | chr5.4:15485232-15485251 | MS.gene72645:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | + | chr5.4:15483660-15483679 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | + | chr5.4:15485182-15485201 | None:intergenic | 25.0% |
| ! | GACATAATTAACTCAACATT+AGG | + | chr5.4:15484796-15484815 | None:intergenic | 25.0% |
| ! | GTACAGAAAAGATTTGTATA+AGG | + | chr5.4:15485311-15485330 | None:intergenic | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | + | chr5.4:15485157-15485176 | None:intergenic | 25.0% |
| !!! | ATTCTGTTTTTCAATAACTC+TGG | + | chr5.4:15485777-15485796 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | - | chr5.4:15483026-15483045 | MS.gene72645:CDS | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | - | chr5.4:15484343-15484362 | MS.gene72645:intron | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | - | chr5.4:15483242-15483261 | MS.gene72645:intron | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | - | chr5.4:15484861-15484880 | MS.gene72645:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | - | chr5.4:15483015-15483034 | MS.gene72645:CDS | 25.0% |
| AAAAGGAAAACATAGAGAAG+AGG | - | chr5.4:15485684-15485703 | MS.gene72645:CDS | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | - | chr5.4:15485667-15485686 | MS.gene72645:CDS | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | + | chr5.4:15483114-15483133 | None:intergenic | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | + | chr5.4:15484339-15484358 | None:intergenic | 30.0% | |
| ATTAGGAAGAAGTTATGCAT+TGG | + | chr5.4:15484779-15484798 | None:intergenic | 30.0% | |
| CGTCAAAGAATCTAAATGTT+GGG | - | chr5.4:15484957-15484976 | MS.gene72645:intron | 30.0% | |
| GATTTCAACAACCTAAGAAT+TGG | + | chr5.4:15482990-15483009 | None:intergenic | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | + | chr5.4:15484673-15484692 | None:intergenic | 30.0% | |
| GTTCAAAAATCAGTTACCAA+TGG | + | chr5.4:15483944-15483963 | None:intergenic | 30.0% | |
| GTTGTCAATTAGCATATGTT+TGG | - | chr5.4:15485335-15485354 | MS.gene72645:intron | 30.0% | |
| TAGCCGCTATTTAAAAACAT+TGG | + | chr5.4:15483248-15483267 | None:intergenic | 30.0% | |
| TATAAGAAGGCAAAAGATGT+TGG | - | chr5.4:15485655-15485674 | MS.gene72645:CDS | 30.0% | |
| TCAATTTGTATGTCCATGAA+GGG | + | chr5.4:15485710-15485729 | None:intergenic | 30.0% | |
| TCTCAACATGATATACAAGT+TGG | - | chr5.4:15484404-15484423 | MS.gene72645:intron | 30.0% | |
| TTATACAAAACAGTGTATCG+TGG | + | chr5.4:15483324-15483343 | None:intergenic | 30.0% | |
| TTGGAATGTGAGAAAATTGA+GGG | + | chr5.4:15483091-15483110 | None:intergenic | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | - | chr5.4:15484170-15484189 | MS.gene72645:CDS | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | - | chr5.4:15483348-15483367 | MS.gene72645:intron | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | - | chr5.4:15484169-15484188 | MS.gene72645:CDS | 30.0% | |
| ! | AAAACAGAATTTTCTACGGT+TGG | - | chr5.4:15485787-15485806 | MS.gene72645:CDS | 30.0% |
| ! | AATTGGCATATCAAAGTACT+TGG | + | chr5.4:15484930-15484949 | None:intergenic | 30.0% |
| ! | ACTGAAGCCTATAAAGTATT+TGG | - | chr5.4:15485483-15485502 | MS.gene72645:intron | 30.0% |
| ! | CTCGGATTTTAAATCGTATT+TGG | + | chr5.4:15484059-15484078 | None:intergenic | 30.0% |
| ! | TTATGTATTCTGGGTTTGTT+TGG | - | chr5.4:15483187-15483206 | MS.gene72645:intron | 30.0% |
| ! | TTTTTAAATAGCGGCTATAG+CGG | - | chr5.4:15483251-15483270 | MS.gene72645:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr5.4:15483511-15483530 | None:intergenic | 30.0% |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | - | chr5.4:15483014-15483033 | MS.gene72645:CDS | 30.0% |
| AAATTGAGACCAAGAGATTC+AGG | - | chr5.4:15485723-15485742 | MS.gene72645:CDS | 35.0% | |
| AAGTATGTTGTGGAACAGTT+AGG | + | chr5.4:15484150-15484169 | None:intergenic | 35.0% | |
| ACTAAGTTGTTTATCCTGAC+AGG | - | chr5.4:15483604-15483623 | MS.gene72645:intron | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | + | chr5.4:15484077-15484096 | None:intergenic | 35.0% | |
| AGTATGTTGTGGAACAGTTA+GGG | + | chr5.4:15484149-15484168 | None:intergenic | 35.0% | |
| AGTGATTTGATCTTCCTATG+AGG | + | chr5.4:15485031-15485050 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | + | chr5.4:15484385-15484404 | None:intergenic | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | - | chr5.4:15483605-15483624 | MS.gene72645:intron | 35.0% | |
| CTCAATTTGTATGTCCATGA+AGG | + | chr5.4:15485711-15485730 | None:intergenic | 35.0% | |
| CTTGTAACCAACAAAAAGGT+TGG | + | chr5.4:15483110-15483129 | None:intergenic | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | - | chr5.4:15483983-15484002 | MS.gene72645:intron | 35.0% | |
| GAACAACGTGATAATTGACT+GGG | + | chr5.4:15484651-15484670 | None:intergenic | 35.0% | |
| GAGATGTTGCAATGTGTATA+AGG | + | chr5.4:15485580-15485599 | None:intergenic | 35.0% | |
| GAGTTCACTTGAAGATTGTT+AGG | + | chr5.4:15485558-15485577 | None:intergenic | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | - | chr5.4:15483967-15483986 | MS.gene72645:intron | 35.0% | |
| GCGTCAAAGAATCTAAATGT+TGG | - | chr5.4:15484956-15484975 | MS.gene72645:intron | 35.0% | |
| GTTGGAATGTGAGAAAATTG+AGG | + | chr5.4:15483092-15483111 | None:intergenic | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | - | chr5.4:15483781-15483800 | MS.gene72645:CDS | 35.0% | |
| TCATGTTGAGATCATTAAGC+AGG | + | chr5.4:15484395-15484414 | None:intergenic | 35.0% | |
| TGAAAGCTACTCCAATTCTT+AGG | - | chr5.4:15482976-15482995 | MS.gene72645:CDS | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | - | chr5.4:15483925-15483944 | MS.gene72645:intron | 35.0% | |
| TTGAGATCATTAAGCAGGTT+TGG | + | chr5.4:15484390-15484409 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | - | chr5.4:15484839-15484858 | MS.gene72645:intron | 35.0% | |
| TTTCGTAACTGTAAGGAATC+CGG | + | chr5.4:15483967-15483986 | None:intergenic | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | - | chr5.4:15484992-15485011 | MS.gene72645:intron | 35.0% |
| ! | AAGGGTATAAGAATGGAGTT+TGG | - | chr5.4:15483033-15483052 | MS.gene72645:CDS | 35.0% |
| ! | ACTGTTCCACAACATACTTT+TGG | - | chr5.4:15484151-15484170 | MS.gene72645:CDS | 35.0% |
| ! | ACTTCACCAAAAGTATGTTG+TGG | + | chr5.4:15484160-15484179 | None:intergenic | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | - | chr5.4:15483290-15483309 | MS.gene72645:intron | 35.0% |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | + | chr5.4:15484432-15484451 | None:intergenic | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | - | chr5.4:15483275-15483294 | MS.gene72645:intron | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | - | chr5.4:15485418-15485437 | MS.gene72645:intron | 35.0% |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | - | chr5.4:15485282-15485301 | MS.gene72645:intron | 35.0% |
| ! | TCACATTCCAACCTTTTTGT+TGG | - | chr5.4:15483100-15483119 | MS.gene72645:intron | 35.0% |
| !! | ACAGATTTTGAAAGTTCAGC+AGG | - | chr5.4:15484591-15484610 | MS.gene72645:intron | 35.0% |
| !! | CAACCTTTTTGTTGGTTACA+AGG | - | chr5.4:15483108-15483127 | MS.gene72645:intron | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | - | chr5.4:15482939-15482958 | MS.gene72645:CDS | 35.0% |
| !! | TGGTAACTGATTTTTGAACC+CGG | - | chr5.4:15483945-15483964 | MS.gene72645:intron | 35.0% |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | - | chr5.4:15484848-15484867 | MS.gene72645:intron | 35.0% |
| AACATCTTGCCTGAATCTCT+TGG | + | chr5.4:15485735-15485754 | None:intergenic | 40.0% | |
| AAGAGGCAAAACATCAGGAA+AGG | - | chr5.4:15485606-15485625 | MS.gene72645:CDS | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | + | chr5.4:15484891-15484910 | None:intergenic | 40.0% | |
| ACAGGCAAGACTATCTTTAG+TGG | + | chr5.4:15484507-15484526 | None:intergenic | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | + | chr5.4:15484331-15484350 | None:intergenic | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | - | chr5.4:15485607-15485626 | MS.gene72645:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | - | chr5.4:15485054-15485073 | MS.gene72645:intron | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | - | chr5.4:15484175-15484194 | MS.gene72645:CDS | 40.0% | |
| GCAAGACTATCTTTAGTGGT+TGG | + | chr5.4:15484503-15484522 | None:intergenic | 40.0% | |
| GGAACAACGTGATAATTGAC+TGG | + | chr5.4:15484652-15484671 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | - | chr5.4:15483706-15483725 | MS.gene72645:CDS | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | - | chr5.4:15483989-15484008 | MS.gene72645:intron | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | + | chr5.4:15484694-15484713 | None:intergenic | 40.0% | |
| TATAGGCTTCAGTGCATGTT+TGG | + | chr5.4:15485476-15485495 | None:intergenic | 40.0% | |
| TCAGACTCGTCTTCTTCAAA+AGG | + | chr5.4:15484555-15484574 | None:intergenic | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | - | chr5.4:15484090-15484109 | MS.gene72645:intron | 40.0% | |
| TGATTAAAGCAGGGAAACCT+TGG | + | chr5.4:15483650-15483669 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | + | chr5.4:15483974-15483993 | None:intergenic | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | + | chr5.4:15483966-15483985 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCAGCAAT+TGG | + | chr5.4:15484947-15484966 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | + | chr5.4:15484525-15484544 | None:intergenic | 40.0% | |
| TTGCCTTCTTATAACTGCCA+TGG | + | chr5.4:15485648-15485667 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | - | chr5.4:15484975-15484994 | MS.gene72645:intron | 40.0% | |
| TTGTGGAACAGTTAGGGAAA+TGG | + | chr5.4:15484143-15484162 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | - | chr5.4:15484359-15484378 | MS.gene72645:intron | 40.0% | |
| TTTCTCCTCCATCACATTCA+CGG | + | chr5.4:15482905-15482924 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | - | chr5.4:15484416-15484435 | MS.gene72645:intron | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+TGG | + | chr5.4:15484630-15484649 | None:intergenic | 40.0% |
| ! | TGAATGTGATGGAGGAGAAA+AGG | - | chr5.4:15482905-15482924 | MS.gene72645:CDS | 40.0% |
| !! | GGCAAGATGTTTTCAAGAGA+AGG | - | chr5.4:15485744-15485763 | MS.gene72645:CDS | 40.0% |
| !!! | GCAGGTTTTGAAAGTTTACC+AGG | - | chr5.4:15484609-15484628 | MS.gene72645:intron | 40.0% |
| ACACATTGCAACATCTCTGC+AGG | - | chr5.4:15485583-15485602 | MS.gene72645:intron | 45.0% | |
| AGAAGACGAGTCTGAGTTAC+TGG | - | chr5.4:15484560-15484579 | MS.gene72645:intron | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | - | chr5.4:15484515-15484534 | MS.gene72645:intron | 45.0% | |
| CAGCCATGGCAGTTATAAGA+AGG | - | chr5.4:15485642-15485661 | MS.gene72645:CDS | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | - | chr5.4:15482894-15482913 | MS.gene72645:CDS | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | - | chr5.4:15485005-15485024 | MS.gene72645:intron | 45.0% | |
| GATTCGCCGTTACTTGTGTA+GGG | + | chr5.4:15483790-15483809 | None:intergenic | 45.0% | |
| GCTTCAGTGCATGTTTGGAT+TGG | + | chr5.4:15485471-15485490 | None:intergenic | 45.0% | |
| TCTGCAAGGGAAGAATTGGA+AGG | - | chr5.4:15484462-15484481 | MS.gene72645:intron | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | + | chr5.4:15483791-15483810 | None:intergenic | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | + | chr5.4:15483631-15483650 | None:intergenic | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | - | chr5.4:15485421-15485440 | MS.gene72645:intron | 45.0% |
| ! | TGCTGCAAATGTTGACTGCA+GGG | - | chr5.4:15484114-15484133 | MS.gene72645:CDS | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | - | chr5.4:15484186-15484205 | MS.gene72645:CDS | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | + | chr5.4:15484372-15484391 | None:intergenic | 45.0% |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | - | chr5.4:15483630-15483649 | MS.gene72645:intron | 45.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | + | chr5.4:15483645-15483664 | None:intergenic | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | - | chr5.4:15484448-15484467 | MS.gene72645:intron | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | - | chr5.4:15483685-15483704 | MS.gene72645:CDS | 50.0% | |
| CATAGAGAAGAGGCCCTTCA+TGG | - | chr5.4:15485694-15485713 | MS.gene72645:CDS | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | + | chr5.4:15483621-15483640 | None:intergenic | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | - | chr5.4:15484458-15484477 | MS.gene72645:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | - | chr5.4:15485601-15485620 | MS.gene72645:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | - | chr5.4:15485628-15485647 | MS.gene72645:CDS | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | - | chr5.4:15485610-15485629 | MS.gene72645:CDS | 50.0% | |
| GGGCATGGTTCAACAATGGA+TGG | - | chr5.4:15484190-15484209 | MS.gene72645:CDS | 50.0% | |
| GTGTACCGTGAATGTGATGG+AGG | - | chr5.4:15482897-15482916 | MS.gene72645:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | - | chr5.4:15484449-15484468 | MS.gene72645:intron | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | - | chr5.4:15483356-15483375 | MS.gene72645:intron | 50.0% | |
| TGCAACATCTCTGCAGGAAG+AGG | - | chr5.4:15485589-15485608 | MS.gene72645:CDS | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | - | chr5.4:15484113-15484132 | MS.gene72645:CDS | 50.0% |
| ! | TGGCATTGAGACCCGAATCA+CGG | + | chr5.4:15485451-15485470 | None:intergenic | 50.0% |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | - | chr5.4:15483619-15483638 | MS.gene72645:intron | 50.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | + | chr5.4:15485022-15485041 | None:intergenic | 55.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | + | chr5.4:15484097-15484116 | None:intergenic | 55.0% | |
| GCTATGGCAGTGTTGCATGG+CGG | - | chr5.4:15483372-15483391 | MS.gene72645:intron | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | + | chr5.4:15484456-15484475 | None:intergenic | 55.0% | |
| ! | ACGGTGAGCCACCGTGATTT+TGG | + | chr5.4:15485432-15485451 | None:intergenic | 55.0% |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | - | chr5.4:15485014-15485033 | MS.gene72645:intron | 55.0% |
| ACGGTGGCTCACCGTGATTC+GGG | - | chr5.4:15485437-15485456 | MS.gene72645:intron | 60.0% | |
| CACGGTGGCTCACCGTGATT+CGG | - | chr5.4:15485436-15485455 | MS.gene72645:intron | 60.0% | |
| GGCGCTATGGCAGTGTTGCA+TGG | - | chr5.4:15483369-15483388 | MS.gene72645:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15482882 | 15485832 | 15482882 | ID=MS.gene72645 |
| chr5.4 | mRNA | 15482882 | 15485832 | 15482882 | ID=MS.gene72645.t1;Parent=MS.gene72645 |
| chr5.4 | exon | 15485585 | 15485832 | 15485585 | ID=MS.gene72645.t1.exon1;Parent=MS.gene72645.t1 |
| chr5.4 | CDS | 15485585 | 15485832 | 15485585 | ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1 |
| chr5.4 | exon | 15484102 | 15484349 | 15484102 | ID=MS.gene72645.t1.exon2;Parent=MS.gene72645.t1 |
| chr5.4 | CDS | 15484102 | 15484349 | 15484102 | ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1 |
| chr5.4 | exon | 15483639 | 15483853 | 15483639 | ID=MS.gene72645.t1.exon3;Parent=MS.gene72645.t1 |
| chr5.4 | CDS | 15483639 | 15483853 | 15483639 | ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1 |
| chr5.4 | exon | 15482882 | 15483109 | 15482882 | ID=MS.gene72645.t1.exon4;Parent=MS.gene72645.t1 |
| chr5.4 | CDS | 15482882 | 15483109 | 15482882 | ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1 |
| Gene Sequence |
| Protein sequence |
