AlfalfaGEDB | MS.gene72645

M. sativa cultivar XinJiangDaYe / MS.gene72645

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72645.t1	XP_003612350.1	94.2	312	17	1	1	312	20	330	1.80E-161	578.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72645.t1	O81791	49.4	314	131	7	1	299	59	359	4.9e-67	256.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72645.t1	G7K041	94.2	312	17	1	1	312	20	330	1.3e-161	578.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene72645.t1	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72645.t1	MTR_5g024070	94.231	312	17	1	1	312	20	330	0.0	601
MS.gene72645.t1	MTR_3g435550	37.037	135	77	2	162	295	38	165	1.78e-23	95.5
MS.gene72645.t1	MTR_3g091700	38.400	125	59	2	171	295	148	254	1.02e-20	89.7
MS.gene72645.t1	MTR_3g104830	48.276	87	40	2	180	264	393	476	1.64e-13	71.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72645.t1	AT4G35590	50.968	310	122	9	1	294	9	304	1.83e-89	270
MS.gene72645.t1	AT4G35590	50.968	310	122	9	1	294	59	354	1.21e-88	270
MS.gene72645.t1	AT1G74480	46.087	115	57	2	180	292	131	242	8.31e-24	99.0
MS.gene72645.t1	AT1G18790	44.628	121	61	3	175	293	120	236	8.72e-24	98.6
MS.gene72645.t1	AT5G66990	42.727	110	59	2	187	295	164	270	1.85e-21	92.4
MS.gene72645.t1	AT5G53040	42.609	115	53	1	181	295	147	248	3.80e-21	90.9
MS.gene72645.t1	AT5G16100	50.000	64	32	0	174	237	346	409	1.64e-13	71.2

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Find 59 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAACATAGAGAAG+AGG	0.595516	5.4:-15483008	MS.gene72645:CDS
AAAAGGAAGTGCAGAGAATT+TGG	0.277802	5.4:-15483700	MS.gene72645:CDS
AAAGATGTTGGAAAGTGAAA+AGG	0.459498	5.4:-15483025	MS.gene72645:CDS
AAAGATTACTTTATCAGATT+TGG	0.267461	5.4:-15483788	MS.gene72645:CDS
AAATTGAGACCAAGAGATTC+AGG	0.445679	5.4:-15482969	MS.gene72645:CDS
AACATCTTGCCTGAATCTCT+TGG	0.476779	5.4:+15482960	None:intergenic
AAGAGGCAAAACATCAGGAA+AGG	0.561722	5.4:-15483086	MS.gene72645:CDS
AAGGGTATAAGAATGGAGTT+TGG	0.381031	5.4:-15485659	MS.gene72645:CDS
AATCTTTGCAACATGGTCAC+TGG	0.527182	5.4:+15483804	None:intergenic
AATTGGCATATCAAAGTACT+TGG	0.526594	5.4:+15483765	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGAAAACATAGAGAAG+AGG	-	chr5.4:15485684-15485703	MS.gene72645:CDS	30.0%
AAAGATGTTGGAAAGTGAAA+AGG	-	chr5.4:15485667-15485686	MS.gene72645:CDS	30.0%
ATACCTTGTAACCAACAAAA+AGG	+	chr5.4:15483114-15483133	None:intergenic	30.0%
ATTAAAGAAGAACATGACAG+AGG	+	chr5.4:15484339-15484358	None:intergenic	30.0%
ATTAGGAAGAAGTTATGCAT+TGG	+	chr5.4:15484779-15484798	None:intergenic	30.0%
CGTCAAAGAATCTAAATGTT+GGG	-	chr5.4:15484957-15484976	MS.gene72645:intron	30.0%
GATTTCAACAACCTAAGAAT+TGG	+	chr5.4:15482990-15483009	None:intergenic	30.0%
GGAATAAAATGTTCAAAAGC+AGG	+	chr5.4:15484673-15484692	None:intergenic	30.0%
GTTCAAAAATCAGTTACCAA+TGG	+	chr5.4:15483944-15483963	None:intergenic	30.0%
GTTGTCAATTAGCATATGTT+TGG	-	chr5.4:15485335-15485354	MS.gene72645:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	15482882	15485832	15482882	ID=MS.gene72645
chr5.4	mRNA	15482882	15485832	15482882	ID=MS.gene72645.t1;Parent=MS.gene72645
chr5.4	exon	15485585	15485832	15485585	ID=MS.gene72645.t1.exon1;Parent=MS.gene72645.t1
chr5.4	CDS	15485585	15485832	15485585	ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1
chr5.4	exon	15484102	15484349	15484102	ID=MS.gene72645.t1.exon2;Parent=MS.gene72645.t1
chr5.4	CDS	15484102	15484349	15484102	ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1
chr5.4	exon	15483639	15483853	15483639	ID=MS.gene72645.t1.exon3;Parent=MS.gene72645.t1
chr5.4	CDS	15483639	15483853	15483639	ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1
chr5.4	exon	15482882	15483109	15482882	ID=MS.gene72645.t1.exon4;Parent=MS.gene72645.t1
chr5.4	CDS	15482882	15483109	15482882	ID=cds.MS.gene72645.t1;Parent=MS.gene72645.t1

Gene Sequence

>MS.gene72645

ATGAGAAGCGTGCATGTGTACCGTGAATGTGATGGAGGAGAAAAGGAAGTTGAAAGAGAGTTTGTGTTTTCTGAGAATGGTTCTTATGTTGAAATGAAAGCTACTCCAATTCTTAGGTTGTTGAAATCTTTTGTTTCTGAAGAGATTTTTGAAGGGTATAAGAATGGAGTTTGGCTTTGTGTTTTTGCTTTTCATGCTTGTAATGTCCCTCAATTTTCTCACATTCCAACCTTTTTGTTGGTTACAAGGTATGTATATCTACTTACCCTTTTATTGAATTTGAATTGTTTCATTTGATTATATGATTATGTATTCTGGGTTTGTTTGGATTCACTTATTTGAACTTATAACTTATGACATGTACCAATGTTTTTAAATAGCGGCTATAGCGGTGTTATAGTGCTATTGCATAGCGGAATTTGAACAAACGGATATTGTTCCACGATACACTGTTTTGTATAAAATGTTGTGAAATAGCAACTATAGCGGCGCTATGGCAGTGTTGCATGGCGGAATTTGAACAAAACGCTATTTTCTGTAATCTGCAATTGACAACATTGAAATGCACATAATTTGTTAACATTGAAATGTACATAATCTGTTTTCAGTTTATTGAAATAAGCTCGCCAAGATAGCTTATGAAAACAACTTATAACATATATGAAAATAATTCGACTTTAGTTCATCTTTTGTTATAAATATAGTTTTTACATAAGTGCTTAACTAAGTTGTTTATCCTGACAGGGCCTTAGCTTTTAGGCCTGACCAAGGTTTCCCTGCTTTAATCAATTTGTATTGTAAAACAGCACACAGAGCAGCAAAATGGTGTGTACTGTGTACAAATTGGACCCTGTGAATGATATATAAATGTATTTCAGTTCTCTTATGAGAATGAAAAATAAAGTCCCTACACAAGTAACGGCGAATCACTCTATAATAAACAGTTTCTTTTCATAAACATAAAGATTCAAATTCAGTTATAAGTAACAGTCCTGTTTGTTAGATTAGATAACTGTAGTCTGTACATGTGTTCAAGTATTGATTTCTTTATGTATGTGGCCATTGGTAACTGATTTTTGAACCCGGATTCCTTACAGTTACGAAATGGTGCAGTAAATGTTTGGCATTGGATGAAGATCAGATGACTTGTATTTTAACTTTATTGAATCAAATTCCAAATACGATTTAAAATCCGAGTTGTCTGATTTTCATCCTACAGTTGCAATTGCGGCTGCTGCAAATGTTGACTGCAGGGTATCCATTTCCCTAACTGTTCCACAACATACTTTTGGTGAAGTTAGAATTTGAGGGCATGGTTCAACAATGGATGGCATAAAATTTAGAAAATATATCTCTCTGTAACTATTTTTAGTGCATATTTTAATCATAACAAACGTAACAAAATTAATGCTTTGACTTGAATATGTTTTTTGATTTCTTGGTTGTCCTAACTTCCTCTGTCATGTTCTTCTTTAATTTTCAGGAATCCAAAGCTTCAGGCCATTCCAAACCTGCTTAATGATCTCAACATGATATACAAGTTGGAACCGAAGAAGGAACGAAAAGATACACCAGAGAGCTCTGCAAGGGAAGAATTGGAAGGAAACAACAATGATTTCCAACCACTAAAGATAGTCTTGCCTGTGCTTAATCAGGATCTCAATTGTCTTCCTTTTGAAGAAGACGAGTCTGAGTTACTGGATGATGAGACAGATTTTGAAAGTTCAGCAGGTTTTGAAAGTTTACCAGGTTTAGATTCAAATGCTCCCAGTCAATTATCACGTTGTTCCTGCTTTTGAACATTTTATTCCAACAACTCAGTCCTAGCTTTATACACTTAATTTATTAATAGGAATCATGGAGATAAAAAAGTTGTAGTGCAATAAATATGTTGCCAATGCATAACTTCTTCCTAATGTTGAGTTAATTATGTCATGTTTTAACATTTTATATCTAATTGATAAAGTGAGTGTTTGCAGGTTTTTTAGGAAAGAAAAAGAGGGCAGCCAGTGACCATGTTGCAAAGATTACTTTATCAGATTTGGCCAAGTACTTTGATATGCCAATTGCTGAAGCGTCAAAGAATCTAAATGTTGGGCTTACTGTTCTCAAAAGGAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTCGACAGTCTCATTCATGATCTTCAGGTTCTACTCCACTTTTTTATTTATTATTATGACTTTAAGAATCTCTGTTGAGCTATATACATACACACATATCAATTTCCAAGAAAACTTCTATGATTTACAGCCAACTCTTGAACTAATATTTAGATATTCGAACATGACTGTCATTTTAATGTGATTGCAAACCTTATAGTATTTGGTTGAAATACAAACATGAAAATTTATAGTATCTGAGGCTTCTTTAGATAGGTAACCTTATACAAATCTTTTCTGTACTTTTGTTGTCAATTAGCATATGTTTGGATGAGCGAAGAGTTTGATAAAATCACAATGTCACCGTGATTTTGTTTAAGTTACAAAGAGTAGCTTTTGTGCCAAAATCACGGTGGCTCACCGTGATTCGGGTCTCAATGCCAATCCAAACATGCACTGAAGCCTATAAAGTATTTGGTCTATAAAATCTTCGTCTTTCGCTTTATTTTCGTTTATGCTTCACTTTTCCTAACAATCTTCAAGTGAACTCCTTATACACATTGCAACATCTCTGCAGGAAGAGGCAAAACATCAGGAAAGGGAGGATAAAGATGCAGCCATGGCAGTTATAAGAAGGCAAAAGATGTTGGAAAGTGAAAAGGAAAACATAGAGAAGAGGCCCTTCATGGACATACAAATTGAGACCAAGAGATTCAGGCAAGATGTTTTCAAGAGAAGGCACAGAGCCAGAGTTATTGAAAAACAGAATTTTCTACGGTTGGAAGCACCTAAACCTAGCAATTAG

Protein sequence

>MS.gene72645.t1

MRSVHVYRECDGGEKEVEREFVFSENGSYVEMKATPILRLLKSFVSEEIFEGYKNGVWLCVFAFHACNVPQFSHIPTFLLVTRNPKLQAIPNLLNDLNMIYKLEPKKERKDTPESSAREELEGNNNDFQPLKIVLPVLNQDLNCLPFEEDESELLDDETDFESSAGFLGKKKRAASDHVAKITLSDLAKYFDMPIAEASKNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKHQEREDKDAAMAVIRRQKMLESEKENIEKRPFMDIQIETKRFRQDVFKRRHRARVIEKQNFLRLEAPKPSN