Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72647.t1 | XP_003612350.1 | 93.6 | 311 | 20 | 0 | 1 | 311 | 20 | 330 | 3.40E-160 | 574.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72647.t1 | O81791 | 49.2 | 309 | 129 | 7 | 1 | 294 | 59 | 354 | 1.6e-65 | 251.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72647.t1 | G7K041 | 93.6 | 311 | 20 | 0 | 1 | 311 | 20 | 330 | 2.4e-160 | 574.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72647.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72647.t1 | MTR_5g024070 | 93.569 | 311 | 20 | 0 | 1 | 311 | 20 | 330 | 0.0 | 597 |
| MS.gene72647.t1 | MTR_3g435550 | 36.296 | 135 | 78 | 2 | 162 | 295 | 38 | 165 | 1.29e-21 | 90.5 |
| MS.gene72647.t1 | MTR_3g091700 | 36.800 | 125 | 61 | 2 | 171 | 295 | 148 | 254 | 1.60e-18 | 84.0 |
| MS.gene72647.t1 | MTR_3g104830 | 48.276 | 87 | 40 | 2 | 180 | 264 | 393 | 476 | 1.59e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72647.t1 | AT4G35590 | 50.323 | 310 | 124 | 9 | 1 | 294 | 9 | 304 | 2.83e-87 | 264 |
| MS.gene72647.t1 | AT4G35590 | 50.323 | 310 | 124 | 9 | 1 | 294 | 59 | 354 | 1.75e-86 | 264 |
| MS.gene72647.t1 | AT1G74480 | 45.217 | 115 | 58 | 2 | 180 | 292 | 131 | 242 | 3.95e-22 | 94.4 |
| MS.gene72647.t1 | AT1G18790 | 43.802 | 121 | 62 | 3 | 175 | 293 | 120 | 236 | 4.96e-22 | 93.6 |
| MS.gene72647.t1 | AT5G66990 | 41.818 | 110 | 60 | 2 | 187 | 295 | 164 | 270 | 8.05e-20 | 87.8 |
| MS.gene72647.t1 | AT5G53040 | 41.739 | 115 | 54 | 1 | 181 | 295 | 147 | 248 | 8.89e-20 | 87.0 |
| MS.gene72647.t1 | AT5G16100 | 50.000 | 64 | 32 | 0 | 174 | 237 | 346 | 409 | 1.67e-13 | 71.2 |
Find 56 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGATTACTTTATCAGATT+TGG | 0.267461 | 5.4:-15508151 | MS.gene72647:CDS |
| AAAAGGAAGTGCAGAGAATT+TGG | 0.277802 | 5.4:-15508063 | MS.gene72647:CDS |
| TGAAAGCTACTCCAATTCTT+AGG | 0.296460 | 5.4:-15509990 | MS.gene72647:CDS |
| CAGTCTCATTCATGATCTTC+AGG | 0.329225 | 5.4:-15508001 | MS.gene72647:intron |
| TTGAGATCATTAAGCAGGTT+TGG | 0.348731 | 5.4:+15508579 | None:intergenic |
| TTCTTTGACGCTTCAGCAAT+TGG | 0.353848 | 5.4:+15508111 | None:intergenic |
| TTTGGAATGGCCTGAAGCTT+TGG | 0.353863 | 5.4:+15508597 | None:intergenic |
| AGAAGACGAGTCTGAGTTAC+TGG | 0.356355 | 5.4:-15508406 | MS.gene72647:CDS |
| TTTCAGGAATCCAAAGCTTC+AGG | 0.357774 | 5.4:-15508607 | MS.gene72647:intron |
| GAGCTCTGCAAGGGAAGAAT+TGG | 0.370187 | 5.4:-15508508 | MS.gene72647:CDS |
| ATACCTTGTAACCAACAAAA+AGG | 0.370413 | 5.4:+15509855 | None:intergenic |
| GATTTCAACAACCTAAGAAT+TGG | 0.374799 | 5.4:+15509979 | None:intergenic |
| GTATTCCTCGCTGGCCTCAT+AGG | 0.379146 | 5.4:-15508041 | MS.gene72647:CDS |
| AAGGGTATAAGAATGGAGTT+TGG | 0.381031 | 5.4:-15509933 | MS.gene72647:CDS |
| AGATGCTAATTGCTAGGTTT+AGG | 0.384292 | 5.4:+15507236 | None:intergenic |
| TCTTCCCTTGCAGAGCTCTC+TGG | 0.396713 | 5.4:+15508513 | None:intergenic |
| AGTCTTGCCTGTGCTTAATC+AGG | 0.396954 | 5.4:-15508451 | MS.gene72647:CDS |
| TTTCTCCTCCATCACATTCA+CGG | 0.441238 | 5.4:+15510064 | None:intergenic |
| CGTCAAAGAATCTAAATGTT+GGG | 0.449206 | 5.4:-15508098 | MS.gene72647:CDS |
| TTGCCTTCTTATCACTGCCA+TGG | 0.457172 | 5.4:+15507403 | None:intergenic |
| AAAGATGTTGGAAAGTGAAA+AGG | 0.459498 | 5.4:-15507381 | MS.gene72647:CDS |
| TTGGGCTTACTGTTCTCAAA+AGG | 0.466425 | 5.4:-15508080 | MS.gene72647:CDS |
| AACATCTTGTCTGAATCTCT+TGG | 0.478887 | 5.4:+15507316 | None:intergenic |
| TCAGACTCGTCTTCTTCAAA+AGG | 0.484709 | 5.4:+15508414 | None:intergenic |
| ACAGGCAAGACTATCTTTAG+TGG | 0.485270 | 5.4:+15508462 | None:intergenic |
| GAGAATTTGGTATTCCTCGC+TGG | 0.487057 | 5.4:-15508050 | MS.gene72647:CDS |
| TCATGTTGAGATCATTAAGC+AGG | 0.496279 | 5.4:+15508574 | None:intergenic |
| CAGCCATGGCAGTGATAAGA+AGG | 0.499451 | 5.4:-15507406 | MS.gene72647:CDS |
| GCAGGAAGAGGCAAAACATC+AGG | 0.500010 | 5.4:-15507447 | MS.gene72647:intron |
| ATCATTAAGCAGGTTTGGAA+TGG | 0.504221 | 5.4:+15508584 | None:intergenic |
| GATAAGAAGGCAAAAGATGT+TGG | 0.505266 | 5.4:-15507393 | MS.gene72647:CDS |
| GCAAGACTATCTTTAGTGGT+TGG | 0.512102 | 5.4:+15508466 | None:intergenic |
| TGAATGTGATGGAGGAGAAA+AGG | 0.512445 | 5.4:-15510061 | MS.gene72647:CDS |
| TCTCAACATGATATACAAGT+TGG | 0.522938 | 5.4:-15508562 | MS.gene72647:CDS |
| AATTGGCATATCAAAGTACT+TGG | 0.526594 | 5.4:+15508128 | None:intergenic |
| AATCTTTGCAACATGGTCAC+TGG | 0.527182 | 5.4:+15508167 | None:intergenic |
| TTGGAATGTGAGAAAATTGA+GGG | 0.529395 | 5.4:+15509878 | None:intergenic |
| ATACAAGTTGGAACCGAAGA+AGG | 0.529415 | 5.4:-15508550 | MS.gene72647:CDS |
| AGAGGCAAAACATCAGGAAA+GGG | 0.535237 | 5.4:-15507441 | MS.gene72647:CDS |
| ATCAGAAGATGCTAATTGCT+AGG | 0.535738 | 5.4:+15507230 | None:intergenic |
| CATAGAGAAGAGGCTCTTCG+TGG | 0.544618 | 5.4:-15507354 | MS.gene72647:CDS |
| GCGTCAAAGAATCTAAATGT+TGG | 0.549395 | 5.4:-15508099 | MS.gene72647:CDS |
| GTTGGAATGTGAGAAAATTG+AGG | 0.552092 | 5.4:+15509877 | None:intergenic |
| AAGAGGCAAAACATCAGGAA+AGG | 0.561722 | 5.4:-15507442 | MS.gene72647:CDS |
| AAAAGGAAAACATAGAGAAG+AGG | 0.578123 | 5.4:-15507364 | MS.gene72647:CDS |
| GGAGGATAAAGATGCAGCCA+TGG | 0.600209 | 5.4:-15507420 | MS.gene72647:CDS |
| AGTGATTTGATCTTCCTATG+AGG | 0.604696 | 5.4:+15508027 | None:intergenic |
| TTGAGATCCTGATTAAGCAC+AGG | 0.605314 | 5.4:+15508444 | None:intergenic |
| GGCAAAACATCAGGAAAGGG+AGG | 0.624378 | 5.4:-15507438 | MS.gene72647:CDS |
| TACACCAGAGAGCTCTGCAA+GGG | 0.628005 | 5.4:-15508517 | MS.gene72647:CDS |
| CATGTGTACCGTGAATGTGA+TGG | 0.635852 | 5.4:-15510072 | MS.gene72647:CDS |
| ATACACCAGAGAGCTCTGCA+AGG | 0.645197 | 5.4:-15508518 | MS.gene72647:CDS |
| ATAAAGTAATCTTTGCAACA+TGG | 0.664575 | 5.4:+15508160 | None:intergenic |
| ATCTTCCTATGAGGCCAGCG+AGG | 0.669880 | 5.4:+15508036 | None:intergenic |
| TCTGCAAGGGAAGAATTGGA+AGG | 0.677605 | 5.4:-15508504 | MS.gene72647:CDS |
| GTGTACCGTGAATGTGATGG+AGG | 0.689782 | 5.4:-15510069 | MS.gene72647:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAATAATAAATAAAAAAG+TGG | + | chr5.4:15509357-15509376 | None:intergenic | 10.0% |
| !! | AACAATTCAAATTCAATAAA+AGG | + | chr5.4:15507510-15507529 | None:intergenic | 15.0% |
| !! | ACAATTCAAATTCAATAAAA+GGG | + | chr5.4:15507509-15507528 | None:intergenic | 15.0% |
| !! | ATTATATGATTATGTATTCT+GGG | - | chr5.4:15507537-15507556 | MS.gene72647:intron | 15.0% |
| !! | AAAGATTACTTTATCAGATT+TGG | - | chr5.4:15509174-15509193 | MS.gene72647:intron | 20.0% |
| !! | AATACAAATTGATTAAAGCA+GGG | + | chr5.4:15508018-15508037 | None:intergenic | 20.0% |
| !! | ACATTTATATATCATTCACA+GGG | + | chr5.4:15508092-15508111 | None:intergenic | 20.0% |
| !! | ATGAAAATTTATAGTATCTG+AGG | - | chr5.4:15509542-15509561 | MS.gene72647:intron | 20.0% |
| !! | GATTATATGATTATGTATTC+TGG | - | chr5.4:15507536-15507555 | MS.gene72647:intron | 20.0% |
| !! | TACATTTATATATCATTCAC+AGG | + | chr5.4:15508093-15508112 | None:intergenic | 20.0% |
| !! | TATTTCAACCAAATACTATA+AGG | + | chr5.4:15509517-15509536 | None:intergenic | 20.0% |
| !! | TTATAGACCAAATACTTTAT+AGG | + | chr5.4:15509770-15509789 | None:intergenic | 20.0% |
| !! | TTGTAACTTAAACAAAATCA+CGG | + | chr5.4:15509668-15509687 | None:intergenic | 20.0% |
| !!! | GAATATGTTTTTTGATTTCT+TGG | - | chr5.4:15508660-15508679 | MS.gene72647:intron | 20.0% |
| !!! | TATTGATTTCTTTATGTATG+TGG | - | chr5.4:15508277-15508296 | MS.gene72647:intron | 20.0% |
| !!! | TTTTTTAGGAAAGAAAAAGA+GGG | - | chr5.4:15509132-15509151 | MS.gene72647:intron | 20.0% |
| ! | AGTTATCTAATCTAACAAAC+AGG | + | chr5.4:15508235-15508254 | None:intergenic | 25.0% |
| ! | ATAAAGTAATCTTTGCAACA+TGG | + | chr5.4:15509168-15509187 | None:intergenic | 25.0% |
| ! | ATTGCAAACCTTATAGTATT+TGG | - | chr5.4:15509506-15509525 | MS.gene72647:intron | 25.0% |
| ! | CAATACAAATTGATTAAAGC+AGG | + | chr5.4:15508019-15508038 | None:intergenic | 25.0% |
| ! | CTAAATATTAGTTCAAGAGT+TGG | + | chr5.4:15509456-15509475 | None:intergenic | 25.0% |
| ! | GATATAAAGTGTATAAAGCT+AGG | + | chr5.4:15509066-15509085 | None:intergenic | 25.0% |
| ! | GTACAGAAAATATTTGTACA+AGG | + | chr5.4:15509585-15509604 | None:intergenic | 25.0% |
| ! | GTTGTCAATTAGTATATGTT+TGG | - | chr5.4:15509609-15509628 | MS.gene72647:intron | 25.0% |
| !! | GTAAATCATAGAAGTTTTCT+TGG | + | chr5.4:15509431-15509450 | None:intergenic | 25.0% |
| !!! | ATTTTTGAAGGGTATAAGAA+TGG | - | chr5.4:15507385-15507404 | MS.gene72647:CDS | 25.0% |
| !!! | CATGTTCTTCTTTAATTTTC+AGG | - | chr5.4:15508702-15508721 | MS.gene72647:intron | 25.0% |
| !!! | GTACCAATGTTTTTAAATAG+CGG | - | chr5.4:15507601-15507620 | MS.gene72647:intron | 25.0% |
| !!! | GTTTTTTAGGAAAGAAAAAG+AGG | - | chr5.4:15509131-15509150 | MS.gene72647:intron | 25.0% |
| !!! | TTTCTGAAGAGATTTTTGAA+GGG | - | chr5.4:15507374-15507393 | MS.gene72647:CDS | 25.0% |
| AAAAGGAAAACATAGAGAAG+AGG | - | chr5.4:15509961-15509980 | MS.gene72647:CDS | 30.0% | |
| AAAGATGTTGGAAAGTGAAA+AGG | - | chr5.4:15509944-15509963 | MS.gene72647:CDS | 30.0% | |
| AGAGTTTGATAAAATCACAG+TGG | - | chr5.4:15509640-15509659 | MS.gene72647:intron | 30.0% | |
| ATACCTTGTAACCAACAAAA+AGG | + | chr5.4:15507473-15507492 | None:intergenic | 30.0% | |
| ATTAAAGAAGAACATGACAG+AGG | + | chr5.4:15508698-15508717 | None:intergenic | 30.0% | |
| CGTCAAAGAATCTAAATGTT+GGG | - | chr5.4:15509227-15509246 | MS.gene72647:intron | 30.0% | |
| GATTTCAACAACCTAAGAAT+TGG | + | chr5.4:15507349-15507368 | None:intergenic | 30.0% | |
| GGAATAAAATGTTCAAAAGC+AGG | + | chr5.4:15509032-15509051 | None:intergenic | 30.0% | |
| GTTCAAAAATCAGTTACCAA+TGG | + | chr5.4:15508303-15508322 | None:intergenic | 30.0% | |
| TAAGGAGTTCACTTAAAGAT+TGG | + | chr5.4:15509839-15509858 | None:intergenic | 30.0% | |
| TAGCCGCTATTTAAAAACAT+TGG | + | chr5.4:15507607-15507626 | None:intergenic | 30.0% | |
| TCTCAACATGATATACAAGT+TGG | - | chr5.4:15508763-15508782 | MS.gene72647:intron | 30.0% | |
| TTATACAAAACAGTGTATCG+TGG | + | chr5.4:15507683-15507702 | None:intergenic | 30.0% | |
| TTGGAATGTGAGAAAATTGA+GGG | + | chr5.4:15507450-15507469 | None:intergenic | 30.0% | |
| TTGGTGAAGTTAGAATTTGA+GGG | - | chr5.4:15508529-15508548 | MS.gene72647:CDS | 30.0% | |
| TTGTGAAATAGCAACTATAG+CGG | - | chr5.4:15507707-15507726 | MS.gene72647:intron | 30.0% | |
| TTTGGTGAAGTTAGAATTTG+AGG | - | chr5.4:15508528-15508547 | MS.gene72647:CDS | 30.0% | |
| ! | AATTGGCATATCAAAGTACT+TGG | + | chr5.4:15509200-15509219 | None:intergenic | 30.0% |
| ! | ACTGAAGCCTATAAAGTATT+TGG | - | chr5.4:15509760-15509779 | MS.gene72647:intron | 30.0% |
| ! | TTATGTATTCTGGGTTTGTT+TGG | - | chr5.4:15507546-15507565 | MS.gene72647:intron | 30.0% |
| ! | TTTTTAAATAGCGGCTATAG+CGG | - | chr5.4:15507610-15507629 | MS.gene72647:intron | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr5.4:15507870-15507889 | None:intergenic | 30.0% |
| !! | GTTTCTGAAGAGATTTTTGA+AGG | - | chr5.4:15507373-15507392 | MS.gene72647:CDS | 30.0% |
| AACATCTTGTCTGAATCTCT+TGG | + | chr5.4:15510012-15510031 | None:intergenic | 35.0% | |
| AAGTATGTTGTGGAACAGTT+AGG | + | chr5.4:15508509-15508528 | None:intergenic | 35.0% | |
| ACTAAGTTGTTTATCCTGAC+AGG | - | chr5.4:15507963-15507982 | MS.gene72647:intron | 35.0% | |
| AGGATGAAAATCAGACAACT+CGG | + | chr5.4:15508436-15508455 | None:intergenic | 35.0% | |
| AGTATGTTGTGGAACAGTTA+GGG | + | chr5.4:15508508-15508527 | None:intergenic | 35.0% | |
| AGTGATTTGATCTTCCTATG+AGG | + | chr5.4:15509301-15509320 | None:intergenic | 35.0% | |
| ATCATTAAGCAGGTTTGGAA+TGG | + | chr5.4:15508744-15508763 | None:intergenic | 35.0% | |
| CTAAGTTGTTTATCCTGACA+GGG | - | chr5.4:15507964-15507983 | MS.gene72647:intron | 35.0% | |
| CTCGGATTTCAAATCGTATT+TGG | + | chr5.4:15508418-15508437 | None:intergenic | 35.0% | |
| CTTGTAACCAACAAAAAGGT+TGG | + | chr5.4:15507469-15507488 | None:intergenic | 35.0% | |
| GAAATGGTGCAGTAAATGTT+TGG | - | chr5.4:15508342-15508361 | MS.gene72647:intron | 35.0% | |
| GAACAACGTGATAATTGACT+GGG | + | chr5.4:15509010-15509029 | None:intergenic | 35.0% | |
| GAGTTCACTTAAAGATTGGT+AGG | + | chr5.4:15509835-15509854 | None:intergenic | 35.0% | |
| GATAAGAAGGCAAAAGATGT+TGG | - | chr5.4:15509932-15509951 | MS.gene72647:CDS | 35.0% | |
| GATTCCTTACAGTTACGAAA+TGG | - | chr5.4:15508326-15508345 | MS.gene72647:intron | 35.0% | |
| GCGTCAAAGAATCTAAATGT+TGG | - | chr5.4:15509226-15509245 | MS.gene72647:intron | 35.0% | |
| GTTGGAATGTGAGAAAATTG+AGG | + | chr5.4:15507451-15507470 | None:intergenic | 35.0% | |
| TAAAGTCCCTACACAAGTAA+CGG | - | chr5.4:15508140-15508159 | MS.gene72647:CDS | 35.0% | |
| TATAGGCTTCAGTGCATATT+TGG | + | chr5.4:15509753-15509772 | None:intergenic | 35.0% | |
| TCATGTTGAGATCATTAAGC+AGG | + | chr5.4:15508754-15508773 | None:intergenic | 35.0% | |
| TGAAAGCTACTCCAATTCTT+AGG | - | chr5.4:15507335-15507354 | MS.gene72647:CDS | 35.0% | |
| TTCTTTATGTATGTGGCCAT+TGG | - | chr5.4:15508284-15508303 | MS.gene72647:intron | 35.0% | |
| TTGAGATCATTAAGCAGGTT+TGG | + | chr5.4:15508749-15508768 | None:intergenic | 35.0% | |
| TTGATAAAGTGAGTGTTTGC+AGG | - | chr5.4:15509109-15509128 | MS.gene72647:intron | 35.0% | |
| TTTCGTAACTGTAAGGAATC+CGG | + | chr5.4:15508326-15508345 | None:intergenic | 35.0% | |
| ! | AAAAGGAAGTGCAGAGAATT+TGG | - | chr5.4:15509262-15509281 | MS.gene72647:intron | 35.0% |
| ! | AAGGGTATAAGAATGGAGTT+TGG | - | chr5.4:15507392-15507411 | MS.gene72647:CDS | 35.0% |
| ! | ACTGTTCCACAACATACTTT+TGG | - | chr5.4:15508510-15508529 | MS.gene72647:CDS | 35.0% |
| ! | ACTTCACCAAAAGTATGTTG+TGG | + | chr5.4:15508519-15508538 | None:intergenic | 35.0% |
| ! | CATAGCGGAATTTGAACAAA+CGG | - | chr5.4:15507649-15507668 | MS.gene72647:intron | 35.0% |
| ! | GTATCTTTTCGTTCCTTCTT+CGG | + | chr5.4:15508791-15508810 | None:intergenic | 35.0% |
| ! | GTTATAGTGCTATTGCATAG+CGG | - | chr5.4:15507634-15507653 | MS.gene72647:intron | 35.0% |
| ! | TAGCTTTTGTGCCAAAATCA+CGG | - | chr5.4:15509692-15509711 | MS.gene72647:intron | 35.0% |
| ! | TATCTGAGGCTTCTTTAGAT+AGG | - | chr5.4:15509556-15509575 | MS.gene72647:intron | 35.0% |
| ! | TCACATTCCAACCTTTTTGT+TGG | - | chr5.4:15507459-15507478 | MS.gene72647:intron | 35.0% |
| !! | ACAGATTTTGAAAGTTCAGC+AGG | - | chr5.4:15508950-15508969 | MS.gene72647:intron | 35.0% |
| !! | CAACCTTTTTGTTGGTTACA+AGG | - | chr5.4:15507467-15507486 | MS.gene72647:intron | 35.0% |
| !! | GACAAGATGTTTTCAAGAGA+AGG | - | chr5.4:15510021-15510040 | MS.gene72647:CDS | 35.0% |
| !! | GAGTTTGTGTTTTCTGAGAA+TGG | - | chr5.4:15507298-15507317 | MS.gene72647:CDS | 35.0% |
| !! | TGGTAACTGATTTTTGAACC+CGG | - | chr5.4:15508304-15508323 | MS.gene72647:intron | 35.0% |
| !!! | TGAGTGTTTGCAGGTTTTTT+AGG | - | chr5.4:15509118-15509137 | MS.gene72647:intron | 35.0% |
| AAGAGGCAAAACATCAGGAA+AGG | - | chr5.4:15509883-15509902 | MS.gene72647:CDS | 40.0% | |
| AATCTTTGCAACATGGTCAC+TGG | + | chr5.4:15509161-15509180 | None:intergenic | 40.0% | |
| ACAGGCAAGACTATCTTTAG+TGG | + | chr5.4:15508866-15508885 | None:intergenic | 40.0% | |
| AGAACATGACAGAGGAAGTT+AGG | + | chr5.4:15508690-15508709 | None:intergenic | 40.0% | |
| AGAGGCAAAACATCAGGAAA+GGG | - | chr5.4:15509884-15509903 | MS.gene72647:CDS | 40.0% | |
| CAGTCTCATTCATGATCTTC+AGG | - | chr5.4:15509324-15509343 | MS.gene72647:intron | 40.0% | |
| GAAGTTAGAATTTGAGGGCA+TGG | - | chr5.4:15508534-15508553 | MS.gene72647:CDS | 40.0% | |
| GCAAGACTATCTTTAGTGGT+TGG | + | chr5.4:15508862-15508881 | None:intergenic | 40.0% | |
| GCGATGTTGTCATGTGTATA+AGG | + | chr5.4:15509857-15509876 | None:intergenic | 40.0% | |
| GCTTCAGTGCATATTTGGAT+TGG | + | chr5.4:15509748-15509767 | None:intergenic | 40.0% | |
| GGAACAACGTGATAATTGAC+TGG | + | chr5.4:15509011-15509030 | None:intergenic | 40.0% | |
| GGTGTGTACTGTGTACAAAT+TGG | - | chr5.4:15508065-15508084 | MS.gene72647:CDS | 40.0% | |
| GTGCAGTAAATGTTTGGCAT+TGG | - | chr5.4:15508348-15508367 | MS.gene72647:intron | 40.0% | |
| TAAAGCTAGGACTGAGTTGT+TGG | + | chr5.4:15509053-15509072 | None:intergenic | 40.0% | |
| TCAGACTCGTCTTCTTCAAA+AGG | + | chr5.4:15508914-15508933 | None:intergenic | 40.0% | |
| TCATCCTACAGTTGCAATTG+CGG | - | chr5.4:15508449-15508468 | MS.gene72647:CDS | 40.0% | |
| TGATTAAAGCAGGGAAACCT+TGG | + | chr5.4:15508009-15508028 | None:intergenic | 40.0% | |
| TGCACCATTTCGTAACTGTA+AGG | + | chr5.4:15508333-15508352 | None:intergenic | 40.0% | |
| TTCGTAACTGTAAGGAATCC+GGG | + | chr5.4:15508325-15508344 | None:intergenic | 40.0% | |
| TTCTTTGACGCTTCAGCAAT+TGG | + | chr5.4:15509217-15509236 | None:intergenic | 40.0% | |
| TTGAGATCCTGATTAAGCAC+AGG | + | chr5.4:15508884-15508903 | None:intergenic | 40.0% | |
| TTGGGCTTACTGTTCTCAAA+AGG | - | chr5.4:15509245-15509264 | MS.gene72647:intron | 40.0% | |
| TTGTGGAACAGTTAGGGAAA+TGG | + | chr5.4:15508502-15508521 | None:intergenic | 40.0% | |
| TTTCAGGAATCCAAAGCTTC+AGG | - | chr5.4:15508718-15508737 | MS.gene72647:intron | 40.0% | |
| TTTCTCCTCCATCACATTCA+CGG | + | chr5.4:15507264-15507283 | None:intergenic | 40.0% | |
| ! | ATACAAGTTGGAACCGAAGA+AGG | - | chr5.4:15508775-15508794 | MS.gene72647:intron | 40.0% |
| ! | GGAGCATTTGAATCTAAACC+TGG | + | chr5.4:15508989-15509008 | None:intergenic | 40.0% |
| ! | TGAATGTGATGGAGGAGAAA+AGG | - | chr5.4:15507264-15507283 | MS.gene72647:CDS | 40.0% |
| !!! | GCAGGTTTTGAAAGTTTACC+AGG | - | chr5.4:15508968-15508987 | MS.gene72647:intron | 40.0% |
| AGAAGACGAGTCTGAGTTAC+TGG | - | chr5.4:15508919-15508938 | MS.gene72647:intron | 45.0% | |
| AGTCTTGCCTGTGCTTAATC+AGG | - | chr5.4:15508874-15508893 | MS.gene72647:intron | 45.0% | |
| CATGTGTACCGTGAATGTGA+TGG | - | chr5.4:15507253-15507272 | MS.gene72647:CDS | 45.0% | |
| GAGAATTTGGTATTCCTCGC+TGG | - | chr5.4:15509275-15509294 | MS.gene72647:intron | 45.0% | |
| GATTCGCCGTTACTTGTGTA+GGG | + | chr5.4:15508149-15508168 | None:intergenic | 45.0% | |
| TCTGCAAGGGAAGAATTGGA+AGG | - | chr5.4:15508821-15508840 | MS.gene72647:intron | 45.0% | |
| TGATTCGCCGTTACTTGTGT+AGG | + | chr5.4:15508150-15508169 | None:intergenic | 45.0% | |
| TTGCCTTCTTATCACTGCCA+TGG | + | chr5.4:15509925-15509944 | None:intergenic | 45.0% | |
| TTGGTCAGGCCTAAAAGCTA+AGG | + | chr5.4:15507990-15508009 | None:intergenic | 45.0% | |
| ! | CTTTTGTGCCAAAATCACGG+TGG | - | chr5.4:15509695-15509714 | MS.gene72647:intron | 45.0% |
| ! | TGCTGCAAATGTTGACTGCA+GGG | - | chr5.4:15508473-15508492 | MS.gene72647:CDS | 45.0% |
| ! | TTGAGGGCATGGTTCAACAA+TGG | - | chr5.4:15508545-15508564 | MS.gene72647:CDS | 45.0% |
| ! | TTTGGAATGGCCTGAAGCTT+TGG | + | chr5.4:15508731-15508750 | None:intergenic | 45.0% |
| !! | TTAGCTTTTAGGCCTGACCA+AGG | - | chr5.4:15507989-15508008 | MS.gene72647:intron | 45.0% |
| AAAGCAGGGAAACCTTGGTC+AGG | + | chr5.4:15508004-15508023 | None:intergenic | 50.0% | |
| ACACATGACAACATCGCTGC+AGG | - | chr5.4:15509860-15509879 | MS.gene72647:CDS | 50.0% | |
| ATACACCAGAGAGCTCTGCA+AGG | - | chr5.4:15508807-15508826 | MS.gene72647:intron | 50.0% | |
| CAGCACACAGAGCAGCAAAA+TGG | - | chr5.4:15508044-15508063 | MS.gene72647:CDS | 50.0% | |
| CAGCCATGGCAGTGATAAGA+AGG | - | chr5.4:15509919-15509938 | MS.gene72647:CDS | 50.0% | |
| CATAGAGAAGAGGCTCTTCG+TGG | - | chr5.4:15509971-15509990 | MS.gene72647:CDS | 50.0% | |
| CTAAAAGCTAAGGCCCTGTC+AGG | + | chr5.4:15507980-15507999 | None:intergenic | 50.0% | |
| GAGCTCTGCAAGGGAAGAAT+TGG | - | chr5.4:15508817-15508836 | MS.gene72647:intron | 50.0% | |
| GCAGGAAGAGGCAAAACATC+AGG | - | chr5.4:15509878-15509897 | MS.gene72647:CDS | 50.0% | |
| GGAGGATAAAGATGCAGCCA+TGG | - | chr5.4:15509905-15509924 | MS.gene72647:CDS | 50.0% | |
| GGCAAAACATCAGGAAAGGG+AGG | - | chr5.4:15509887-15509906 | MS.gene72647:CDS | 50.0% | |
| GGGCATGGTTCAACAATGGA+TGG | - | chr5.4:15508549-15508568 | MS.gene72647:CDS | 50.0% | |
| GTGTACCGTGAATGTGATGG+AGG | - | chr5.4:15507256-15507275 | MS.gene72647:CDS | 50.0% | |
| TACACCAGAGAGCTCTGCAA+GGG | - | chr5.4:15508808-15508827 | MS.gene72647:intron | 50.0% | |
| TAGCAACTATAGCGGCGCTA+TGG | - | chr5.4:15507715-15507734 | MS.gene72647:intron | 50.0% | |
| ! | CTGCTGCAAATGTTGACTGC+AGG | - | chr5.4:15508472-15508491 | MS.gene72647:CDS | 50.0% |
| !! | CTGACAGGGCCTTAGCTTTT+AGG | - | chr5.4:15507978-15507997 | MS.gene72647:intron | 50.0% |
| ATCTTCCTATGAGGCCAGCG+AGG | + | chr5.4:15509292-15509311 | None:intergenic | 55.0% | |
| CGTTGAGACTGCCCGAATCA+CGG | + | chr5.4:15509725-15509744 | None:intergenic | 55.0% | |
| GACAACATCGCTGCAGGAAG+AGG | - | chr5.4:15509866-15509885 | MS.gene72647:CDS | 55.0% | |
| GCAGCCGCAATTGCAACTGT+AGG | + | chr5.4:15508456-15508475 | None:intergenic | 55.0% | |
| GCTATGGCAGTGTTGCATGG+CGG | - | chr5.4:15507731-15507750 | MS.gene72647:intron | 55.0% | |
| TCTTCCCTTGCAGAGCTCTC+TGG | + | chr5.4:15508815-15508834 | None:intergenic | 55.0% | |
| ! | GTATTCCTCGCTGGCCTCAT+AGG | - | chr5.4:15509284-15509303 | MS.gene72647:intron | 55.0% |
| GGCGCTATGGCAGTGTTGCA+TGG | - | chr5.4:15507728-15507747 | MS.gene72647:intron | 60.0% | |
| ! | ACGGCGAGCCACCGTGATTT+TGG | + | chr5.4:15509706-15509725 | None:intergenic | 60.0% |
| ACGGTGGCTCGCCGTGATTC+GGG | - | chr5.4:15509711-15509730 | MS.gene72647:intron | 65.0% | |
| CACGGTGGCTCGCCGTGATT+CGG | - | chr5.4:15509710-15509729 | MS.gene72647:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15507241 | 15510106 | 15507241 | ID=MS.gene72647 |
| chr5.4 | mRNA | 15507241 | 15510106 | 15507241 | ID=MS.gene72647.t1;Parent=MS.gene72647 |
| chr5.4 | exon | 15509859 | 15510106 | 15509859 | ID=MS.gene72647.t1.exon1;Parent=MS.gene72647.t1 |
| chr5.4 | CDS | 15509859 | 15510106 | 15509859 | ID=cds.MS.gene72647.t1;Parent=MS.gene72647.t1 |
| chr5.4 | exon | 15508376 | 15508623 | 15508376 | ID=MS.gene72647.t1.exon2;Parent=MS.gene72647.t1 |
| chr5.4 | CDS | 15508376 | 15508623 | 15508376 | ID=cds.MS.gene72647.t1;Parent=MS.gene72647.t1 |
| chr5.4 | exon | 15508002 | 15508216 | 15508002 | ID=MS.gene72647.t1.exon3;Parent=MS.gene72647.t1 |
| chr5.4 | CDS | 15508002 | 15508216 | 15508002 | ID=cds.MS.gene72647.t1;Parent=MS.gene72647.t1 |
| chr5.4 | exon | 15507241 | 15507465 | 15507241 | ID=MS.gene72647.t1.exon4;Parent=MS.gene72647.t1 |
| chr5.4 | CDS | 15507241 | 15507465 | 15507241 | ID=cds.MS.gene72647.t1;Parent=MS.gene72647.t1 |
| Gene Sequence |
| Protein sequence |
