Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72666.t1 | XP_003612379.1 | 92.5 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 2.00E-219 | 771.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72666.t1 | F4IXE7 | 30.7 | 427 | 262 | 6 | 3 | 419 | 621 | 1023 | 2.2e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72666.t1 | G7K198 | 92.5 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 1.4e-219 | 771.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72666.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72666.t1 | MTR_5g024390 | 93.692 | 428 | 27 | 0 | 1 | 428 | 1 | 428 | 0.0 | 831 |
| MS.gene72666.t1 | MTR_5g024500 | 92.523 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 0.0 | 822 |
| MS.gene72666.t1 | MTR_3g103110 | 68.319 | 464 | 107 | 4 | 3 | 428 | 339 | 800 | 0.0 | 656 |
| MS.gene72666.t1 | MTR_7g109640 | 71.233 | 438 | 89 | 4 | 3 | 428 | 384 | 796 | 0.0 | 644 |
| MS.gene72666.t1 | MTR_3g103120 | 67.198 | 439 | 110 | 3 | 2 | 428 | 425 | 841 | 0.0 | 587 |
| MS.gene72666.t1 | MTR_5g071340 | 42.956 | 433 | 208 | 8 | 3 | 421 | 679 | 1086 | 1.59e-112 | 356 |
| MS.gene72666.t1 | MTR_3g464550 | 43.056 | 432 | 209 | 8 | 1 | 419 | 601 | 1008 | 9.50e-109 | 345 |
| MS.gene72666.t1 | MTR_3g103160 | 37.915 | 422 | 170 | 11 | 2 | 421 | 107 | 438 | 3.76e-71 | 231 |
| MS.gene72666.t1 | MTR_2g078040 | 33.566 | 429 | 249 | 7 | 3 | 419 | 762 | 1166 | 4.01e-71 | 244 |
| MS.gene72666.t1 | MTR_1g103830 | 34.965 | 429 | 245 | 5 | 3 | 419 | 606 | 1012 | 2.84e-68 | 236 |
| MS.gene72666.t1 | MTR_1g072130 | 32.598 | 408 | 243 | 6 | 3 | 398 | 812 | 1199 | 5.33e-61 | 214 |
| MS.gene72666.t1 | MTR_7g095140 | 31.579 | 304 | 196 | 5 | 125 | 425 | 13 | 307 | 5.00e-50 | 173 |
| MS.gene72666.t1 | MTR_4g099530 | 27.209 | 430 | 258 | 12 | 3 | 419 | 111 | 498 | 1.35e-40 | 151 |
| MS.gene72666.t1 | MTR_1g068930 | 24.946 | 465 | 250 | 15 | 4 | 419 | 441 | 855 | 3.68e-40 | 153 |
| MS.gene72666.t1 | MTR_1g068930 | 24.946 | 465 | 250 | 15 | 4 | 419 | 478 | 892 | 3.75e-40 | 153 |
| MS.gene72666.t1 | MTR_7g102610 | 24.468 | 470 | 237 | 14 | 29 | 426 | 527 | 950 | 9.58e-32 | 128 |
| MS.gene72666.t1 | MTR_4g056990 | 24.274 | 482 | 268 | 15 | 2 | 428 | 189 | 628 | 2.95e-31 | 126 |
| MS.gene72666.t1 | MTR_4g057290 | 25.587 | 426 | 212 | 10 | 37 | 394 | 126 | 514 | 1.71e-29 | 120 |
| MS.gene72666.t1 | MTR_4g050090 | 23.469 | 490 | 252 | 13 | 12 | 422 | 199 | 644 | 7.14e-28 | 117 |
| MS.gene72666.t1 | MTR_1g062330 | 23.288 | 438 | 264 | 16 | 37 | 421 | 386 | 804 | 2.96e-22 | 100 |
| MS.gene72666.t1 | MTR_6g061000 | 51.136 | 88 | 32 | 2 | 90 | 177 | 25 | 101 | 3.39e-19 | 82.8 |
| MS.gene72666.t1 | MTR_2g084425 | 30.556 | 180 | 116 | 4 | 245 | 423 | 847 | 1018 | 1.54e-17 | 85.9 |
| MS.gene72666.t1 | MTR_2g084425 | 23.129 | 294 | 144 | 6 | 7 | 251 | 465 | 725 | 2.08e-14 | 75.9 |
| MS.gene72666.t1 | MTR_2g084425 | 23.129 | 294 | 144 | 6 | 7 | 251 | 465 | 725 | 2.83e-14 | 75.5 |
| MS.gene72666.t1 | MTR_3g109988 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 5.42e-13 | 70.1 |
| MS.gene72666.t1 | MTR_3g110005 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 5.42e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72666.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 368 | 777 | 1.32e-98 | 313 |
| MS.gene72666.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 3.07e-97 | 313 |
| MS.gene72666.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 3.07e-97 | 313 |
| MS.gene72666.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 6.55e-97 | 313 |
| MS.gene72666.t1 | AT5G58610 | 40.848 | 448 | 218 | 9 | 3 | 428 | 590 | 1012 | 6.92e-97 | 313 |
| MS.gene72666.t1 | AT5G58610 | 40.848 | 448 | 218 | 9 | 3 | 428 | 590 | 1012 | 7.71e-97 | 313 |
| MS.gene72666.t1 | AT5G58610 | 39.130 | 437 | 215 | 8 | 3 | 428 | 590 | 986 | 4.89e-87 | 286 |
| MS.gene72666.t1 | AT5G58610 | 39.130 | 437 | 215 | 8 | 3 | 428 | 590 | 986 | 6.08e-87 | 286 |
| MS.gene72666.t1 | AT5G58610 | 40.838 | 382 | 185 | 7 | 3 | 367 | 599 | 956 | 3.36e-82 | 271 |
| MS.gene72666.t1 | AT5G58610 | 40.838 | 382 | 185 | 7 | 3 | 367 | 590 | 947 | 3.91e-82 | 271 |
| MS.gene72666.t1 | AT5G58610 | 40.116 | 344 | 165 | 7 | 3 | 329 | 590 | 909 | 2.76e-68 | 233 |
| MS.gene72666.t1 | AT5G36740 | 32.401 | 429 | 254 | 6 | 3 | 419 | 545 | 949 | 4.29e-67 | 232 |
| MS.gene72666.t1 | AT5G36740 | 32.401 | 429 | 254 | 6 | 3 | 419 | 545 | 949 | 4.29e-67 | 232 |
| MS.gene72666.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 4.07e-64 | 223 |
| MS.gene72666.t1 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 4.18e-64 | 223 |
| MS.gene72666.t1 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 4.18e-64 | 223 |
| MS.gene72666.t1 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 4.18e-64 | 223 |
| MS.gene72666.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 576 | 984 | 8.38e-64 | 222 |
| MS.gene72666.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 1.08e-63 | 222 |
| MS.gene72666.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 1.08e-63 | 222 |
| MS.gene72666.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 1.08e-63 | 222 |
| MS.gene72666.t1 | AT5G36740 | 31.435 | 439 | 255 | 7 | 3 | 419 | 392 | 806 | 1.24e-63 | 221 |
| MS.gene72666.t1 | AT5G63900 | 36.858 | 331 | 190 | 8 | 94 | 421 | 228 | 542 | 4.09e-62 | 210 |
| MS.gene72666.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 4.83e-60 | 211 |
| MS.gene72666.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 4.83e-60 | 211 |
| MS.gene72666.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 5.28e-60 | 211 |
| MS.gene72666.t1 | AT5G36670 | 30.337 | 445 | 256 | 8 | 3 | 419 | 545 | 963 | 1.19e-58 | 207 |
| MS.gene72666.t1 | AT5G36670 | 30.337 | 445 | 256 | 8 | 3 | 419 | 545 | 963 | 1.19e-58 | 207 |
| MS.gene72666.t1 | AT5G36740 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 7.24e-57 | 201 |
| MS.gene72666.t1 | AT5G36740 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 7.24e-57 | 201 |
| MS.gene72666.t1 | AT5G36670 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 7.24e-57 | 201 |
| MS.gene72666.t1 | AT5G36670 | 29.451 | 455 | 257 | 9 | 3 | 419 | 392 | 820 | 6.08e-55 | 196 |
| MS.gene72666.t1 | AT5G36670 | 29.451 | 455 | 257 | 9 | 3 | 419 | 545 | 973 | 1.36e-54 | 196 |
| MS.gene72666.t1 | AT3G14980 | 30.473 | 338 | 201 | 6 | 3 | 330 | 621 | 934 | 1.57e-42 | 160 |
| MS.gene72666.t1 | AT3G53680 | 28.358 | 469 | 232 | 17 | 4 | 417 | 411 | 830 | 1.19e-40 | 154 |
| MS.gene72666.t1 | AT2G37520 | 26.050 | 476 | 235 | 14 | 4 | 417 | 392 | 812 | 1.27e-40 | 154 |
| MS.gene72666.t1 | AT3G53680 | 28.358 | 469 | 232 | 17 | 4 | 417 | 409 | 828 | 1.32e-40 | 154 |
| MS.gene72666.t1 | AT2G36720 | 25.470 | 479 | 251 | 14 | 13 | 423 | 533 | 973 | 1.03e-38 | 149 |
| MS.gene72666.t1 | AT2G36720 | 25.470 | 479 | 251 | 14 | 13 | 423 | 533 | 973 | 1.03e-38 | 149 |
| MS.gene72666.t1 | AT2G27980 | 24.395 | 496 | 255 | 16 | 6 | 422 | 606 | 1060 | 4.47e-32 | 129 |
Find 70 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTATCTGCAACCTTAAT+TGG | 0.181951 | 5.4:+15751484 | None:intergenic |
| TTCACATTCTTGTTTGCATT+TGG | 0.183779 | 5.4:+15751669 | None:intergenic |
| GTTTGTTCAGTTTGTGGTTT+TGG | 0.236361 | 5.4:-15751814 | MS.gene72666:CDS |
| TGGTTTCTATAATGTGATTT+TGG | 0.241530 | 5.4:-15751269 | MS.gene72666:CDS |
| GTGGCAACTATAAGAATTTA+TGG | 0.245404 | 5.4:-15751223 | MS.gene72666:CDS |
| ATCAACTCTCTTCCTGATAA+AGG | 0.280267 | 5.4:+15751343 | None:intergenic |
| TCACATTCTTGTTTGCATTT+GGG | 0.312904 | 5.4:+15751670 | None:intergenic |
| GCATTCCACCTCCGGTGTTT+AGG | 0.316446 | 5.4:-15751757 | MS.gene72666:CDS |
| GTTGATAAAGAATCAAGTTT+TGG | 0.324712 | 5.4:-15752178 | MS.gene72666:CDS |
| TTATGTCTAAAGAAGTTGTT+AGG | 0.347395 | 5.4:-15751511 | MS.gene72666:CDS |
| AAAGGAGAGTAAGTTGAATA+TGG | 0.354999 | 5.4:-15751407 | MS.gene72666:CDS |
| AATTTAATCACATGGAGAAT+TGG | 0.356404 | 5.4:-15751564 | MS.gene72666:CDS |
| AAACGATGGGTATTGTTTCT+TGG | 0.373623 | 5.4:-15752200 | None:intergenic |
| GATAGTGTTTGTTCAGTTTG+TGG | 0.378867 | 5.4:-15751820 | MS.gene72666:CDS |
| CTGGGTTCGCATGATCATAT+AGG | 0.387880 | 5.4:-15751949 | MS.gene72666:CDS |
| GGATTGTCAAAGGGAAGCTC+TGG | 0.400874 | 5.4:-15751968 | MS.gene72666:CDS |
| AACACTTGGACAAGATCATT+TGG | 0.403595 | 5.4:-15751052 | MS.gene72666:CDS |
| TGAAGAGGAGTTTAATCAAA+AGG | 0.404213 | 5.4:-15751425 | MS.gene72666:CDS |
| GTCCTTCTGCATTCCACCTC+CGG | 0.404287 | 5.4:-15751765 | MS.gene72666:CDS |
| AAGCACTGAAAAGACCTATA+TGG | 0.410177 | 5.4:-15750946 | MS.gene72666:CDS |
| GGCTCTTGGTGTATTGTATG+AGG | 0.423950 | 5.4:-15751386 | MS.gene72666:CDS |
| ACCATCCACAAGTATCTTGT+TGG | 0.424383 | 5.4:-15752010 | MS.gene72666:CDS |
| GTTGTTAGGAAAACCAATTA+AGG | 0.435095 | 5.4:-15751497 | MS.gene72666:CDS |
| TATAAGAATTTATGGTCAAA+AGG | 0.441015 | 5.4:-15751215 | MS.gene72666:CDS |
| AGTAACAAAGTTGTCAAAAG+AGG | 0.441397 | 5.4:-15752126 | MS.gene72666:CDS |
| ATCGAGTTCCGCTTGGTGAA+TGG | 0.464422 | 5.4:-15751729 | MS.gene72666:CDS |
| CAAGCAATGCAAGGCCATAT+AGG | 0.465235 | 5.4:+15750932 | None:intergenic |
| CCTGATAAAGGATCAAAAGT+TGG | 0.477884 | 5.4:+15751355 | None:intergenic |
| ACAAGTATCTTGTTGGAAGA+TGG | 0.480189 | 5.4:-15752003 | MS.gene72666:CDS |
| GGAAGATGGAAGGTCGTTGT+TGG | 0.488980 | 5.4:-15751989 | MS.gene72666:CDS |
| TTGTCGTCGATATTGTTCCT+TGG | 0.489112 | 5.4:+15751168 | None:intergenic |
| TCGTCGATATTGTTCCTTGG+TGG | 0.492474 | 5.4:+15751171 | None:intergenic |
| TGGGTTCGCATGATCATATA+GGG | 0.493127 | 5.4:-15751948 | MS.gene72666:CDS |
| GCTCTTGGTGTATTGTATGA+GGG | 0.493509 | 5.4:-15751385 | MS.gene72666:CDS |
| GAGAAACAGTTAACTCGCTT+AGG | 0.495020 | 5.4:-15751115 | MS.gene72666:CDS |
| AGGAATGTGTCATTTGTTGA+TGG | 0.496868 | 5.4:-15751146 | MS.gene72666:CDS |
| CAGAGGATGCTATGAACACT+TGG | 0.500216 | 5.4:-15751066 | MS.gene72666:CDS |
| GTGATTAAATTCAATTCCTA+CGG | 0.512914 | 5.4:+15751576 | None:intergenic |
| GTCGTTGTTGGATTGTCAAA+GGG | 0.517227 | 5.4:-15751977 | MS.gene72666:CDS |
| GGTCGTTGTTGGATTGTCAA+AGG | 0.528790 | 5.4:-15751978 | MS.gene72666:CDS |
| AGTAAGTTGAATATGGCTCT+TGG | 0.540429 | 5.4:-15751400 | MS.gene72666:CDS |
| TGAGACCTAAACACCGGAGG+TGG | 0.542694 | 5.4:+15751752 | None:intergenic |
| ATCTTCCAACAAGATACTTG+TGG | 0.550941 | 5.4:+15752005 | None:intergenic |
| GGTCTCAATCGAGTTCCGCT+TGG | 0.551276 | 5.4:-15751736 | MS.gene72666:CDS |
| ATATCACTTTGGATGCGTAA+AGG | 0.554258 | 5.4:-15751599 | MS.gene72666:CDS |
| TGTGAATAGTGTTGATGAAG+AGG | 0.557314 | 5.4:-15751440 | MS.gene72666:CDS |
| CACCGGCTTCGAGTCTCATG+CGG | 0.565673 | 5.4:-15752049 | MS.gene72666:CDS |
| ACCGGCTTCGAGTCTCATGC+GGG | 0.580291 | 5.4:-15752048 | MS.gene72666:CDS |
| GTAACAAAGTTGTCAAAAGA+GGG | 0.581494 | 5.4:-15752125 | MS.gene72666:CDS |
| GATTGTCAAAGGGAAGCTCT+GGG | 0.597706 | 5.4:-15751967 | MS.gene72666:CDS |
| AGGAATTGAATTTAATCACA+TGG | 0.598130 | 5.4:-15751572 | MS.gene72666:CDS |
| TTTCAGTGCTTTGAGACACA+TGG | 0.604056 | 5.4:+15750958 | None:intergenic |
| AGATAATCTAACATGGACAT+TGG | 0.607457 | 5.4:-15751470 | MS.gene72666:CDS |
| CTCCAACATCAAGCAATGCA+AGG | 0.609626 | 5.4:+15750923 | None:intergenic |
| TCCAACAAGATACTTGTGGA+TGG | 0.616702 | 5.4:+15752009 | None:intergenic |
| CACCGGAGGTGGAATGCAGA+AGG | 0.621708 | 5.4:+15751763 | None:intergenic |
| ACCCGCATGAGACTCGAAGC+CGG | 0.625739 | 5.4:+15752047 | None:intergenic |
| GTATCTTGTTGGAAGATGGA+AGG | 0.629827 | 5.4:-15751999 | MS.gene72666:CDS |
| ATTACTTCTGCATTCCTCAG+AGG | 0.633654 | 5.4:-15751083 | MS.gene72666:CDS |
| ACAAGAATGTGAAGATCACA+AGG | 0.637763 | 5.4:-15751659 | MS.gene72666:CDS |
| AATGGGTGAAGTGATTTCAG+TGG | 0.642896 | 5.4:-15751242 | MS.gene72666:CDS |
| TTTGGATGCGTAAAGGCCGT+AGG | 0.643030 | 5.4:-15751592 | MS.gene72666:CDS |
| CTCGATTGAGACCTAAACAC+CGG | 0.653298 | 5.4:+15751746 | None:intergenic |
| AAATCACATTATAGAAACCA+CGG | 0.660195 | 5.4:+15751272 | None:intergenic |
| AGGTTGCAGATAATCTAACA+TGG | 0.665981 | 5.4:-15751477 | MS.gene72666:CDS |
| GGACAAAACCATTCACCAAG+CGG | 0.675521 | 5.4:+15751721 | None:intergenic |
| ACTACCCTGACAGAAAACAT+TGG | 0.690433 | 5.4:+15752146 | None:intergenic |
| AAGGAACAATATCGACGACA+AGG | 0.695708 | 5.4:-15751166 | MS.gene72666:CDS |
| AGTGTTCATAGCATCCTCTG+AGG | 0.736105 | 5.4:+15751069 | None:intergenic |
| GATTGAGACCTAAACACCGG+AGG | 0.741957 | 5.4:+15751749 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAGAATTTATGGTCAAA+AGG | - | chr5.4:15751911-15751930 | MS.gene72666:CDS | 20.0% |
| !!! | ACTTTTTTAGAATTTGAGAA+TGG | - | chr5.4:15752143-15752162 | MS.gene72666:CDS | 20.0% |
| ! | AAATCACATTATAGAAACCA+CGG | + | chr5.4:15751857-15751876 | None:intergenic | 25.0% |
| ! | AATTTAATCACATGGAGAAT+TGG | - | chr5.4:15751562-15751581 | MS.gene72666:CDS | 25.0% |
| ! | AGGAATTGAATTTAATCACA+TGG | - | chr5.4:15751554-15751573 | MS.gene72666:CDS | 25.0% |
| ! | GTGATTAAATTCAATTCCTA+CGG | + | chr5.4:15751553-15751572 | None:intergenic | 25.0% |
| ! | TTATGTCTAAAGAAGTTGTT+AGG | - | chr5.4:15751615-15751634 | MS.gene72666:CDS | 25.0% |
| !! | TGGTTTCTATAATGTGATTT+TGG | - | chr5.4:15751857-15751876 | MS.gene72666:CDS | 25.0% |
| !!! | AATGTGATTTTGGAGAAAAT+GGG | - | chr5.4:15751867-15751886 | MS.gene72666:CDS | 25.0% |
| !!! | GTTGATAAAGAATCAAGTTT+TGG | - | chr5.4:15750948-15750967 | MS.gene72666:CDS | 25.0% |
| !!! | TAATGTGATTTTGGAGAAAA+TGG | - | chr5.4:15751866-15751885 | MS.gene72666:CDS | 25.0% |
| AGATAATCTAACATGGACAT+TGG | - | chr5.4:15751656-15751675 | MS.gene72666:CDS | 30.0% | |
| AGATTATCTGCAACCTTAAT+TGG | + | chr5.4:15751645-15751664 | None:intergenic | 30.0% | |
| AGTAACAAAGTTGTCAAAAG+AGG | - | chr5.4:15751000-15751019 | MS.gene72666:CDS | 30.0% | |
| GTAACAAAGTTGTCAAAAGA+GGG | - | chr5.4:15751001-15751020 | MS.gene72666:CDS | 30.0% | |
| GTGGCAACTATAAGAATTTA+TGG | - | chr5.4:15751903-15751922 | MS.gene72666:CDS | 30.0% | |
| GTTGTTAGGAAAACCAATTA+AGG | - | chr5.4:15751629-15751648 | MS.gene72666:CDS | 30.0% | |
| TGAAGAGGAGTTTAATCAAA+AGG | - | chr5.4:15751701-15751720 | MS.gene72666:CDS | 30.0% | |
| TGTGAGCAAAAATATCACTT+TGG | - | chr5.4:15751516-15751535 | MS.gene72666:CDS | 30.0% | |
| ! | AAAGGAGAGTAAGTTGAATA+TGG | - | chr5.4:15751719-15751738 | MS.gene72666:CDS | 30.0% |
| ! | CATATTTTGCAACAACAAGT+TGG | + | chr5.4:15751429-15751448 | None:intergenic | 30.0% |
| ! | TCACATTCTTGTTTGCATTT+GGG | + | chr5.4:15751459-15751478 | None:intergenic | 30.0% |
| ! | TTCACATTCTTGTTTGCATT+TGG | + | chr5.4:15751460-15751479 | None:intergenic | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+AGG | - | chr5.4:15750955-15750974 | MS.gene72666:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCA+GGG | - | chr5.4:15750956-15750975 | MS.gene72666:CDS | 30.0% |
| AACACTTGGACAAGATCATT+TGG | - | chr5.4:15752074-15752093 | MS.gene72666:CDS | 35.0% | |
| ACAAGAATGTGAAGATCACA+AGG | - | chr5.4:15751467-15751486 | MS.gene72666:CDS | 35.0% | |
| ACAAGTATCTTGTTGGAAGA+TGG | - | chr5.4:15751123-15751142 | MS.gene72666:CDS | 35.0% | |
| AGGTTGCAGATAATCTAACA+TGG | - | chr5.4:15751649-15751668 | MS.gene72666:CDS | 35.0% | |
| ATATCACTTTGGATGCGTAA+AGG | - | chr5.4:15751527-15751546 | MS.gene72666:CDS | 35.0% | |
| ATCAACTCTCTTCCTGATAA+AGG | + | chr5.4:15751786-15751805 | None:intergenic | 35.0% | |
| ATCTTCCAACAAGATACTTG+TGG | + | chr5.4:15751124-15751143 | None:intergenic | 35.0% | |
| CCTGATAAAGGATCAAAAGT+TGG | + | chr5.4:15751774-15751793 | None:intergenic | 35.0% | |
| GATAGTGTTTGTTCAGTTTG+TGG | - | chr5.4:15751306-15751325 | MS.gene72666:CDS | 35.0% | |
| ! | AGTAAGTTGAATATGGCTCT+TGG | - | chr5.4:15751726-15751745 | MS.gene72666:CDS | 35.0% |
| ! | CCAACTTTTGATCCTTTATC+AGG | - | chr5.4:15751771-15751790 | MS.gene72666:CDS | 35.0% |
| ! | GTTTGTTCAGTTTGTGGTTT+TGG | - | chr5.4:15751312-15751331 | MS.gene72666:CDS | 35.0% |
| !! | AAGCACTGAAAAGACCTATA+TGG | - | chr5.4:15752180-15752199 | MS.gene72666:CDS | 35.0% |
| !! | AGGAATGTGTCATTTGTTGA+TGG | - | chr5.4:15751980-15751999 | MS.gene72666:CDS | 35.0% |
| !! | TGTGAATAGTGTTGATGAAG+AGG | - | chr5.4:15751686-15751705 | MS.gene72666:CDS | 35.0% |
| !!! | CAAGATCATTTGGTTTTGCA+AGG | - | chr5.4:15752084-15752103 | MS.gene72666:CDS | 35.0% |
| !!! | CGTGTTACTTTTACTATCAC+CGG | - | chr5.4:15751060-15751079 | MS.gene72666:CDS | 35.0% |
| AAGGAACAATATCGACGACA+AGG | - | chr5.4:15751960-15751979 | MS.gene72666:CDS | 40.0% | |
| AATGGGTGAAGTGATTTCAG+TGG | - | chr5.4:15751884-15751903 | MS.gene72666:CDS | 40.0% | |
| ACCATCCACAAGTATCTTGT+TGG | - | chr5.4:15751116-15751135 | MS.gene72666:CDS | 40.0% | |
| ACTACCCTGACAGAAAACAT+TGG | + | chr5.4:15750983-15751002 | None:intergenic | 40.0% | |
| ATTACTTCTGCATTCCTCAG+AGG | - | chr5.4:15752043-15752062 | MS.gene72666:CDS | 40.0% | |
| CAAAAACGCTTAAACTTCCG+TGG | - | chr5.4:15751837-15751856 | MS.gene72666:CDS | 40.0% | |
| GAGAAACAGTTAACTCGCTT+AGG | - | chr5.4:15752011-15752030 | MS.gene72666:CDS | 40.0% | |
| GTATCTTGTTGGAAGATGGA+AGG | - | chr5.4:15751127-15751146 | MS.gene72666:CDS | 40.0% | |
| GTCGTTGTTGGATTGTCAAA+GGG | - | chr5.4:15751149-15751168 | MS.gene72666:CDS | 40.0% | |
| TCCAACAAGATACTTGTGGA+TGG | + | chr5.4:15751120-15751139 | None:intergenic | 40.0% | |
| TGGGTTCGCATGATCATATA+GGG | - | chr5.4:15751178-15751197 | MS.gene72666:CDS | 40.0% | |
| TTGTCGTCGATATTGTTCCT+TGG | + | chr5.4:15751961-15751980 | None:intergenic | 40.0% | |
| ! | GCTCTTGGTGTATTGTATGA+GGG | - | chr5.4:15751741-15751760 | MS.gene72666:CDS | 40.0% |
| !! | GGTTTTGCAGTGTAGTTTGT+GGG | - | chr5.4:15751583-15751602 | MS.gene72666:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+TGG | - | chr5.4:15751582-15751601 | MS.gene72666:CDS | 40.0% |
| !! | TTTCAGTGCTTTGAGACACA+TGG | + | chr5.4:15752171-15752190 | None:intergenic | 40.0% |
| !!! | TGTTCAGTTTGTGGTTTTGG+AGG | - | chr5.4:15751315-15751334 | MS.gene72666:CDS | 40.0% |
| AGTGTTCATAGCATCCTCTG+AGG | + | chr5.4:15752060-15752079 | None:intergenic | 45.0% | |
| CAAGCAATGCAAGGCCATAT+AGG | + | chr5.4:15752197-15752216 | None:intergenic | 45.0% | |
| CAGAGGATGCTATGAACACT+TGG | - | chr5.4:15752060-15752079 | MS.gene72666:CDS | 45.0% | |
| CTCGATTGAGACCTAAACAC+CGG | + | chr5.4:15751383-15751402 | None:intergenic | 45.0% | |
| CTGGGTTCGCATGATCATAT+AGG | - | chr5.4:15751177-15751196 | MS.gene72666:CDS | 45.0% | |
| GATTGTCAAAGGGAAGCTCT+GGG | - | chr5.4:15751159-15751178 | MS.gene72666:CDS | 45.0% | |
| GGACAAAACCATTCACCAAG+CGG | + | chr5.4:15751408-15751427 | None:intergenic | 45.0% | |
| GGTCGTTGTTGGATTGTCAA+AGG | - | chr5.4:15751148-15751167 | MS.gene72666:CDS | 45.0% | |
| TCGTCGATATTGTTCCTTGG+TGG | + | chr5.4:15751958-15751977 | None:intergenic | 45.0% | |
| ! | AGGGACCAATGTTTTCTGTC+AGG | - | chr5.4:15750975-15750994 | MS.gene72666:CDS | 45.0% |
| ! | GGCTCTTGGTGTATTGTATG+AGG | - | chr5.4:15751740-15751759 | MS.gene72666:CDS | 45.0% |
| ! | GGGACCAATGTTTTCTGTCA+GGG | - | chr5.4:15750976-15750995 | MS.gene72666:CDS | 45.0% |
| ! | GGTTGCAGAGATAGTTTTCG+TGG | - | chr5.4:15751932-15751951 | MS.gene72666:CDS | 45.0% |
| !!! | TTGTGGTTTTGGAGGTGACT+TGG | - | chr5.4:15751323-15751342 | MS.gene72666:CDS | 45.0% |
| GATTGAGACCTAAACACCGG+AGG | + | chr5.4:15751380-15751399 | None:intergenic | 50.0% | |
| GGAAGATGGAAGGTCGTTGT+TGG | - | chr5.4:15751137-15751156 | MS.gene72666:CDS | 50.0% | |
| GGATTGTCAAAGGGAAGCTC+TGG | - | chr5.4:15751158-15751177 | MS.gene72666:CDS | 50.0% | |
| TTTGGATGCGTAAAGGCCGT+AGG | - | chr5.4:15751534-15751553 | MS.gene72666:CDS | 50.0% | |
| ! | ATCGAGTTCCGCTTGGTGAA+TGG | - | chr5.4:15751397-15751416 | MS.gene72666:CDS | 50.0% |
| ! | GATAGTTTTCGTGGCCACCA+AGG | - | chr5.4:15751941-15751960 | MS.gene72666:CDS | 50.0% |
| GCATTCCACCTCCGGTGTTT+AGG | - | chr5.4:15751369-15751388 | MS.gene72666:CDS | 55.0% | |
| GGTCTCAATCGAGTTCCGCT+TGG | - | chr5.4:15751390-15751409 | MS.gene72666:CDS | 55.0% | |
| GTCCTTCTGCATTCCACCTC+CGG | - | chr5.4:15751361-15751380 | MS.gene72666:CDS | 55.0% | |
| TGAGACCTAAACACCGGAGG+TGG | + | chr5.4:15751377-15751396 | None:intergenic | 55.0% | |
| ACCCGCATGAGACTCGAAGC+CGG | + | chr5.4:15751082-15751101 | None:intergenic | 60.0% | |
| CACCGGAGGTGGAATGCAGA+AGG | + | chr5.4:15751366-15751385 | None:intergenic | 60.0% | |
| ! | ACCGGCTTCGAGTCTCATGC+GGG | - | chr5.4:15751078-15751097 | MS.gene72666:CDS | 60.0% |
| !! | CACCGGCTTCGAGTCTCATG+CGG | - | chr5.4:15751077-15751096 | MS.gene72666:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15750931 | 15752217 | 15750931 | ID=MS.gene72666 |
| chr5.4 | mRNA | 15750931 | 15752217 | 15750931 | ID=MS.gene72666.t1;Parent=MS.gene72666 |
| chr5.4 | exon | 15750931 | 15752217 | 15750931 | ID=MS.gene72666.t1.exon1;Parent=MS.gene72666.t1 |
| chr5.4 | CDS | 15750931 | 15752217 | 15750931 | ID=cds.MS.gene72666.t1;Parent=MS.gene72666.t1 |
| Gene Sequence |
| Protein sequence |
