Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72669.t1 | XP_003612379.1 | 92.5 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 2.00E-219 | 771.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72669.t1 | F4IXE7 | 30.7 | 427 | 262 | 6 | 3 | 419 | 621 | 1023 | 2.2e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72669.t1 | G7K198 | 92.5 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 1.4e-219 | 771.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72669.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72669.t1 | MTR_5g024390 | 93.692 | 428 | 27 | 0 | 1 | 428 | 1 | 428 | 0.0 | 831 |
| MS.gene72669.t1 | MTR_5g024500 | 92.523 | 428 | 32 | 0 | 1 | 428 | 1 | 428 | 0.0 | 822 |
| MS.gene72669.t1 | MTR_3g103110 | 68.319 | 464 | 107 | 4 | 3 | 428 | 339 | 800 | 0.0 | 656 |
| MS.gene72669.t1 | MTR_7g109640 | 71.233 | 438 | 89 | 4 | 3 | 428 | 384 | 796 | 0.0 | 644 |
| MS.gene72669.t1 | MTR_3g103120 | 67.198 | 439 | 110 | 3 | 2 | 428 | 425 | 841 | 0.0 | 587 |
| MS.gene72669.t1 | MTR_5g071340 | 42.956 | 433 | 208 | 8 | 3 | 421 | 679 | 1086 | 1.59e-112 | 356 |
| MS.gene72669.t1 | MTR_3g464550 | 43.056 | 432 | 209 | 8 | 1 | 419 | 601 | 1008 | 9.50e-109 | 345 |
| MS.gene72669.t1 | MTR_3g103160 | 37.915 | 422 | 170 | 11 | 2 | 421 | 107 | 438 | 3.76e-71 | 231 |
| MS.gene72669.t1 | MTR_2g078040 | 33.566 | 429 | 249 | 7 | 3 | 419 | 762 | 1166 | 4.01e-71 | 244 |
| MS.gene72669.t1 | MTR_1g103830 | 34.965 | 429 | 245 | 5 | 3 | 419 | 606 | 1012 | 2.84e-68 | 236 |
| MS.gene72669.t1 | MTR_1g072130 | 32.598 | 408 | 243 | 6 | 3 | 398 | 812 | 1199 | 5.33e-61 | 214 |
| MS.gene72669.t1 | MTR_7g095140 | 31.579 | 304 | 196 | 5 | 125 | 425 | 13 | 307 | 5.00e-50 | 173 |
| MS.gene72669.t1 | MTR_4g099530 | 27.209 | 430 | 258 | 12 | 3 | 419 | 111 | 498 | 1.35e-40 | 151 |
| MS.gene72669.t1 | MTR_1g068930 | 24.946 | 465 | 250 | 15 | 4 | 419 | 441 | 855 | 3.68e-40 | 153 |
| MS.gene72669.t1 | MTR_1g068930 | 24.946 | 465 | 250 | 15 | 4 | 419 | 478 | 892 | 3.75e-40 | 153 |
| MS.gene72669.t1 | MTR_7g102610 | 24.468 | 470 | 237 | 14 | 29 | 426 | 527 | 950 | 9.58e-32 | 128 |
| MS.gene72669.t1 | MTR_4g056990 | 24.274 | 482 | 268 | 15 | 2 | 428 | 189 | 628 | 2.95e-31 | 126 |
| MS.gene72669.t1 | MTR_4g057290 | 25.587 | 426 | 212 | 10 | 37 | 394 | 126 | 514 | 1.71e-29 | 120 |
| MS.gene72669.t1 | MTR_4g050090 | 23.469 | 490 | 252 | 13 | 12 | 422 | 199 | 644 | 7.14e-28 | 117 |
| MS.gene72669.t1 | MTR_1g062330 | 23.288 | 438 | 264 | 16 | 37 | 421 | 386 | 804 | 2.96e-22 | 100 |
| MS.gene72669.t1 | MTR_6g061000 | 51.136 | 88 | 32 | 2 | 90 | 177 | 25 | 101 | 3.39e-19 | 82.8 |
| MS.gene72669.t1 | MTR_2g084425 | 30.556 | 180 | 116 | 4 | 245 | 423 | 847 | 1018 | 1.54e-17 | 85.9 |
| MS.gene72669.t1 | MTR_2g084425 | 23.129 | 294 | 144 | 6 | 7 | 251 | 465 | 725 | 2.08e-14 | 75.9 |
| MS.gene72669.t1 | MTR_2g084425 | 23.129 | 294 | 144 | 6 | 7 | 251 | 465 | 725 | 2.83e-14 | 75.5 |
| MS.gene72669.t1 | MTR_3g109988 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 5.42e-13 | 70.1 |
| MS.gene72669.t1 | MTR_3g110005 | 29.891 | 184 | 100 | 6 | 217 | 390 | 191 | 355 | 5.42e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72669.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 368 | 777 | 1.32e-98 | 313 |
| MS.gene72669.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 3.07e-97 | 313 |
| MS.gene72669.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 3.07e-97 | 313 |
| MS.gene72669.t1 | AT5G58610 | 41.014 | 434 | 215 | 7 | 3 | 419 | 599 | 1008 | 6.55e-97 | 313 |
| MS.gene72669.t1 | AT5G58610 | 40.848 | 448 | 218 | 9 | 3 | 428 | 590 | 1012 | 6.92e-97 | 313 |
| MS.gene72669.t1 | AT5G58610 | 40.848 | 448 | 218 | 9 | 3 | 428 | 590 | 1012 | 7.71e-97 | 313 |
| MS.gene72669.t1 | AT5G58610 | 39.130 | 437 | 215 | 8 | 3 | 428 | 590 | 986 | 4.89e-87 | 286 |
| MS.gene72669.t1 | AT5G58610 | 39.130 | 437 | 215 | 8 | 3 | 428 | 590 | 986 | 6.08e-87 | 286 |
| MS.gene72669.t1 | AT5G58610 | 40.838 | 382 | 185 | 7 | 3 | 367 | 599 | 956 | 3.36e-82 | 271 |
| MS.gene72669.t1 | AT5G58610 | 40.838 | 382 | 185 | 7 | 3 | 367 | 590 | 947 | 3.91e-82 | 271 |
| MS.gene72669.t1 | AT5G58610 | 40.116 | 344 | 165 | 7 | 3 | 329 | 590 | 909 | 2.76e-68 | 233 |
| MS.gene72669.t1 | AT5G36740 | 32.401 | 429 | 254 | 6 | 3 | 419 | 545 | 949 | 4.29e-67 | 232 |
| MS.gene72669.t1 | AT5G36740 | 32.401 | 429 | 254 | 6 | 3 | 419 | 545 | 949 | 4.29e-67 | 232 |
| MS.gene72669.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 4.07e-64 | 223 |
| MS.gene72669.t1 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 4.18e-64 | 223 |
| MS.gene72669.t1 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 4.18e-64 | 223 |
| MS.gene72669.t1 | AT1G05380 | 33.021 | 427 | 255 | 6 | 3 | 419 | 520 | 925 | 4.18e-64 | 223 |
| MS.gene72669.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 576 | 984 | 8.38e-64 | 222 |
| MS.gene72669.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 1.08e-63 | 222 |
| MS.gene72669.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 1.08e-63 | 222 |
| MS.gene72669.t1 | AT3G14980 | 31.640 | 433 | 262 | 6 | 3 | 425 | 621 | 1029 | 1.08e-63 | 222 |
| MS.gene72669.t1 | AT5G36740 | 31.435 | 439 | 255 | 7 | 3 | 419 | 392 | 806 | 1.24e-63 | 221 |
| MS.gene72669.t1 | AT5G63900 | 36.858 | 331 | 190 | 8 | 94 | 421 | 228 | 542 | 4.09e-62 | 210 |
| MS.gene72669.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 4.83e-60 | 211 |
| MS.gene72669.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 4.83e-60 | 211 |
| MS.gene72669.t1 | AT4G14920 | 31.019 | 432 | 261 | 6 | 3 | 422 | 580 | 986 | 5.28e-60 | 211 |
| MS.gene72669.t1 | AT5G36670 | 30.337 | 445 | 256 | 8 | 3 | 419 | 545 | 963 | 1.19e-58 | 207 |
| MS.gene72669.t1 | AT5G36670 | 30.337 | 445 | 256 | 8 | 3 | 419 | 545 | 963 | 1.19e-58 | 207 |
| MS.gene72669.t1 | AT5G36740 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 7.24e-57 | 201 |
| MS.gene72669.t1 | AT5G36740 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 7.24e-57 | 201 |
| MS.gene72669.t1 | AT5G36670 | 32.345 | 371 | 215 | 6 | 3 | 361 | 545 | 891 | 7.24e-57 | 201 |
| MS.gene72669.t1 | AT5G36670 | 29.451 | 455 | 257 | 9 | 3 | 419 | 392 | 820 | 6.08e-55 | 196 |
| MS.gene72669.t1 | AT5G36670 | 29.451 | 455 | 257 | 9 | 3 | 419 | 545 | 973 | 1.36e-54 | 196 |
| MS.gene72669.t1 | AT3G14980 | 30.473 | 338 | 201 | 6 | 3 | 330 | 621 | 934 | 1.57e-42 | 160 |
| MS.gene72669.t1 | AT3G53680 | 28.358 | 469 | 232 | 17 | 4 | 417 | 411 | 830 | 1.19e-40 | 154 |
| MS.gene72669.t1 | AT2G37520 | 26.050 | 476 | 235 | 14 | 4 | 417 | 392 | 812 | 1.27e-40 | 154 |
| MS.gene72669.t1 | AT3G53680 | 28.358 | 469 | 232 | 17 | 4 | 417 | 409 | 828 | 1.32e-40 | 154 |
| MS.gene72669.t1 | AT2G36720 | 25.470 | 479 | 251 | 14 | 13 | 423 | 533 | 973 | 1.03e-38 | 149 |
| MS.gene72669.t1 | AT2G36720 | 25.470 | 479 | 251 | 14 | 13 | 423 | 533 | 973 | 1.03e-38 | 149 |
| MS.gene72669.t1 | AT2G27980 | 24.395 | 496 | 255 | 16 | 6 | 422 | 606 | 1060 | 4.47e-32 | 129 |
Find 65 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTATCTGCAACCTTAAT+TGG | 0.181951 | 5.4:-15776332 | None:intergenic |
| TTCACATTCTTGTTTGCATT+TGG | 0.183779 | 5.4:-15776147 | None:intergenic |
| GTTTGTTCAGTTTGTGGTTT+TGG | 0.236361 | 5.4:+15776002 | MS.gene72669:CDS |
| TGGTTTCTATAATGTGATTT+TGG | 0.241530 | 5.4:+15776547 | MS.gene72669:CDS |
| GTGGCAACTATAAGAATTTA+TGG | 0.245404 | 5.4:+15776593 | MS.gene72669:CDS |
| ATCAACTCTCTTCCTGATAA+AGG | 0.280267 | 5.4:-15776473 | None:intergenic |
| TCACATTCTTGTTTGCATTT+GGG | 0.312904 | 5.4:-15776146 | None:intergenic |
| GCATTCCACCTCCGTTGTTT+AGG | 0.320877 | 5.4:+15776059 | MS.gene72669:CDS |
| GTTGATAAAGAATCAAGTTT+TGG | 0.324712 | 5.4:+15775638 | MS.gene72669:CDS |
| GAACGATGGGTATTGTTTCT+TGG | 0.326060 | 5.4:+15775616 | None:intergenic |
| TTATGTCTAAAGAAGTTGTT+AGG | 0.347395 | 5.4:+15776305 | MS.gene72669:CDS |
| AAAGGAGAGTAAGTTGAATA+TGG | 0.354999 | 5.4:+15776409 | MS.gene72669:CDS |
| AATTTAATCACATGGAGAAT+TGG | 0.356404 | 5.4:+15776252 | MS.gene72669:CDS |
| GATAGTGTTTGTTCAGTTTG+TGG | 0.378867 | 5.4:+15775996 | MS.gene72669:CDS |
| CTGGGTTCGCATGATCATAT+AGG | 0.387880 | 5.4:+15775867 | MS.gene72669:CDS |
| GGATTGTCAAAGGGAAGCTC+TGG | 0.400874 | 5.4:+15775848 | MS.gene72669:CDS |
| AACACTTGGACAAGATCATT+TGG | 0.403595 | 5.4:+15776764 | MS.gene72669:CDS |
| TGAAGAGGAGTTTAATCAAA+AGG | 0.404213 | 5.4:+15776391 | MS.gene72669:CDS |
| AAGCACTGAAAAGACCTATA+TGG | 0.410177 | 5.4:+15776870 | MS.gene72669:CDS |
| GGCTCTTGGTGTATTGTATG+AGG | 0.423950 | 5.4:+15776430 | MS.gene72669:CDS |
| GTTGTTAGGAAAACCAATTA+AGG | 0.435095 | 5.4:+15776319 | MS.gene72669:CDS |
| TATAAGAATTTATGGTCAAA+AGG | 0.441015 | 5.4:+15776601 | MS.gene72669:CDS |
| AGTAACAAAGTTGTCAAAAG+AGG | 0.441397 | 5.4:+15775690 | MS.gene72669:CDS |
| ATCGAGTTCCGCTTGGTGAA+TGG | 0.464422 | 5.4:+15776087 | MS.gene72669:CDS |
| CAAGCAATGCAAGGCCATAT+AGG | 0.465235 | 5.4:-15776884 | None:intergenic |
| CCTGATAAAGGATCAAAAGT+TGG | 0.477884 | 5.4:-15776461 | None:intergenic |
| TTGTCGTCGATATTGTTCCT+TGG | 0.489112 | 5.4:-15776648 | None:intergenic |
| TCGTCGATATTGTTCCTTGG+TGG | 0.492474 | 5.4:-15776645 | None:intergenic |
| TGGGTTCGCATGATCATATA+GGG | 0.493127 | 5.4:+15775868 | MS.gene72669:CDS |
| GCTCTTGGTGTATTGTATGA+GGG | 0.493509 | 5.4:+15776431 | MS.gene72669:CDS |
| GGAAGACGGAAGGTCGTTGT+TGG | 0.494542 | 5.4:+15775827 | MS.gene72669:CDS |
| GAGAAACAGTTAACTCGCTT+AGG | 0.495020 | 5.4:+15776701 | MS.gene72669:CDS |
| AGGAATGTGTCATTTGTTGA+TGG | 0.496868 | 5.4:+15776670 | MS.gene72669:CDS |
| CAGAGGATGCTATGAACACT+TGG | 0.500216 | 5.4:+15776750 | MS.gene72669:CDS |
| TCCAACAAAATACTAGTAGA+TGG | 0.510261 | 5.4:-15775807 | None:intergenic |
| GTGATTAAATTCAATTCCTA+CGG | 0.512914 | 5.4:-15776240 | None:intergenic |
| GTCGTTGTTGGATTGTCAAA+GGG | 0.517227 | 5.4:+15775839 | MS.gene72669:CDS |
| GGTCGTTGTTGGATTGTCAA+AGG | 0.528790 | 5.4:+15775838 | MS.gene72669:CDS |
| AGTAAGTTGAATATGGCTCT+TGG | 0.540429 | 5.4:+15776416 | MS.gene72669:CDS |
| GGTCTCAATCGAGTTCCGCT+TGG | 0.551276 | 5.4:+15776080 | MS.gene72669:CDS |
| ATATCACTTTGGATGCGTAA+AGG | 0.554258 | 5.4:+15776217 | MS.gene72669:CDS |
| TGTGAATAGTGTTGATGAAG+AGG | 0.557314 | 5.4:+15776376 | MS.gene72669:CDS |
| CACCGGCTTCGAGTCTCATG+CGG | 0.565673 | 5.4:+15775767 | MS.gene72669:CDS |
| ACCGGCTTCGAGTCTCATGC+GGG | 0.580291 | 5.4:+15775768 | MS.gene72669:CDS |
| GTAACAAAGTTGTCAAAAGA+GGG | 0.581494 | 5.4:+15775691 | MS.gene72669:CDS |
| TGAGACCTAAACAACGGAGG+TGG | 0.586505 | 5.4:-15776064 | None:intergenic |
| GATTGTCAAAGGGAAGCTCT+GGG | 0.597706 | 5.4:+15775849 | MS.gene72669:CDS |
| AGGAATTGAATTTAATCACA+TGG | 0.598130 | 5.4:+15776244 | MS.gene72669:CDS |
| TTTCAGTGCTTTGAGACACA+TGG | 0.604056 | 5.4:-15776858 | None:intergenic |
| AGATAATCTAACATGGACAT+TGG | 0.607457 | 5.4:+15776346 | MS.gene72669:CDS |
| GTCCAACATCAAGCAATGCA+AGG | 0.610249 | 5.4:-15776893 | None:intergenic |
| CAACGGAGGTGGAATGCAGA+AGG | 0.622944 | 5.4:-15776053 | None:intergenic |
| ACCCGCATGAGACTCGAAGC+CGG | 0.625739 | 5.4:-15775769 | None:intergenic |
| ATTACTTCTGCATTCCTCAG+AGG | 0.633654 | 5.4:+15776733 | MS.gene72669:CDS |
| ACAAGAATGTGAAGATCACA+AGG | 0.637763 | 5.4:+15776157 | MS.gene72669:CDS |
| AATGGGTGAAGTGATTTCAG+TGG | 0.642896 | 5.4:+15776574 | MS.gene72669:CDS |
| TTTGGATGCGTAAAGGCCGT+AGG | 0.643030 | 5.4:+15776224 | MS.gene72669:CDS |
| AAATCACATTATAGAAACCA+CGG | 0.660195 | 5.4:-15776544 | None:intergenic |
| AGGTTGCAGATAATCTAACA+TGG | 0.665981 | 5.4:+15776339 | MS.gene72669:CDS |
| GGACAAAACCATTCACCAAG+CGG | 0.675521 | 5.4:-15776095 | None:intergenic |
| CTCGATTGAGACCTAAACAA+CGG | 0.677857 | 5.4:-15776070 | None:intergenic |
| ACTACCCTGACAGAAAACAT+TGG | 0.690433 | 5.4:-15775670 | None:intergenic |
| AAGGAACAATATCGACGACA+AGG | 0.695708 | 5.4:+15776650 | MS.gene72669:CDS |
| AGTGTTCATAGCATCCTCTG+AGG | 0.736105 | 5.4:-15776747 | None:intergenic |
| GATTGAGACCTAAACAACGG+AGG | 0.762353 | 5.4:-15776067 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAGAATTTATGGTCAAA+AGG | + | chr5.4:15776601-15776620 | MS.gene72669:CDS | 20.0% |
| !!! | ACTTTTTTAGAATTTGAGAA+TGG | + | chr5.4:15776833-15776852 | MS.gene72669:CDS | 20.0% |
| ! | AAATCACATTATAGAAACCA+CGG | - | chr5.4:15776547-15776566 | None:intergenic | 25.0% |
| ! | AATTTAATCACATGGAGAAT+TGG | + | chr5.4:15776252-15776271 | MS.gene72669:CDS | 25.0% |
| ! | AGGAATTGAATTTAATCACA+TGG | + | chr5.4:15776244-15776263 | MS.gene72669:CDS | 25.0% |
| ! | GTGATTAAATTCAATTCCTA+CGG | - | chr5.4:15776243-15776262 | None:intergenic | 25.0% |
| ! | TTATGTCTAAAGAAGTTGTT+AGG | + | chr5.4:15776305-15776324 | MS.gene72669:CDS | 25.0% |
| !! | TGGTTTCTATAATGTGATTT+TGG | + | chr5.4:15776547-15776566 | MS.gene72669:CDS | 25.0% |
| !!! | AATGTGATTTTGGAGAAAAT+GGG | + | chr5.4:15776557-15776576 | MS.gene72669:CDS | 25.0% |
| !!! | GTTGATAAAGAATCAAGTTT+TGG | + | chr5.4:15775638-15775657 | MS.gene72669:CDS | 25.0% |
| !!! | TAATGTGATTTTGGAGAAAA+TGG | + | chr5.4:15776556-15776575 | MS.gene72669:CDS | 25.0% |
| AGATAATCTAACATGGACAT+TGG | + | chr5.4:15776346-15776365 | MS.gene72669:CDS | 30.0% | |
| AGATTATCTGCAACCTTAAT+TGG | - | chr5.4:15776335-15776354 | None:intergenic | 30.0% | |
| AGTAACAAAGTTGTCAAAAG+AGG | + | chr5.4:15775690-15775709 | MS.gene72669:CDS | 30.0% | |
| GTAACAAAGTTGTCAAAAGA+GGG | + | chr5.4:15775691-15775710 | MS.gene72669:CDS | 30.0% | |
| GTGGCAACTATAAGAATTTA+TGG | + | chr5.4:15776593-15776612 | MS.gene72669:CDS | 30.0% | |
| GTTGTTAGGAAAACCAATTA+AGG | + | chr5.4:15776319-15776338 | MS.gene72669:CDS | 30.0% | |
| TCCAACAAAATACTAGTAGA+TGG | - | chr5.4:15775810-15775829 | None:intergenic | 30.0% | |
| TGAAGAGGAGTTTAATCAAA+AGG | + | chr5.4:15776391-15776410 | MS.gene72669:CDS | 30.0% | |
| TGTGAGCAAAAATATCACTT+TGG | + | chr5.4:15776206-15776225 | MS.gene72669:CDS | 30.0% | |
| ! | AAAGGAGAGTAAGTTGAATA+TGG | + | chr5.4:15776409-15776428 | MS.gene72669:CDS | 30.0% |
| ! | ACCATCTACTAGTATTTTGT+TGG | + | chr5.4:15775806-15775825 | MS.gene72669:CDS | 30.0% |
| ! | ACTAGTATTTTGTTGGAAGA+CGG | + | chr5.4:15775813-15775832 | MS.gene72669:CDS | 30.0% |
| ! | CATATTTTGCAACAACAAGT+TGG | - | chr5.4:15776119-15776138 | None:intergenic | 30.0% |
| ! | TCACATTCTTGTTTGCATTT+GGG | - | chr5.4:15776149-15776168 | None:intergenic | 30.0% |
| ! | TTCACATTCTTGTTTGCATT+TGG | - | chr5.4:15776150-15776169 | None:intergenic | 30.0% |
| !!! | AAGAATCAAGTTTTGGTTTC+AGG | + | chr5.4:15775645-15775664 | MS.gene72669:CDS | 30.0% |
| !!! | AGAATCAAGTTTTGGTTTCA+GGG | + | chr5.4:15775646-15775665 | MS.gene72669:CDS | 30.0% |
| AACACTTGGACAAGATCATT+TGG | + | chr5.4:15776764-15776783 | MS.gene72669:CDS | 35.0% | |
| ACAAGAATGTGAAGATCACA+AGG | + | chr5.4:15776157-15776176 | MS.gene72669:CDS | 35.0% | |
| AGGTTGCAGATAATCTAACA+TGG | + | chr5.4:15776339-15776358 | MS.gene72669:CDS | 35.0% | |
| ATATCACTTTGGATGCGTAA+AGG | + | chr5.4:15776217-15776236 | MS.gene72669:CDS | 35.0% | |
| ATCAACTCTCTTCCTGATAA+AGG | - | chr5.4:15776476-15776495 | None:intergenic | 35.0% | |
| CCTGATAAAGGATCAAAAGT+TGG | - | chr5.4:15776464-15776483 | None:intergenic | 35.0% | |
| GATAGTGTTTGTTCAGTTTG+TGG | + | chr5.4:15775996-15776015 | MS.gene72669:CDS | 35.0% | |
| ! | AGTAAGTTGAATATGGCTCT+TGG | + | chr5.4:15776416-15776435 | MS.gene72669:CDS | 35.0% |
| ! | CCAACTTTTGATCCTTTATC+AGG | + | chr5.4:15776461-15776480 | MS.gene72669:CDS | 35.0% |
| ! | GTTTGTTCAGTTTGTGGTTT+TGG | + | chr5.4:15776002-15776021 | MS.gene72669:CDS | 35.0% |
| !! | AAGCACTGAAAAGACCTATA+TGG | + | chr5.4:15776870-15776889 | MS.gene72669:CDS | 35.0% |
| !! | AGGAATGTGTCATTTGTTGA+TGG | + | chr5.4:15776670-15776689 | MS.gene72669:CDS | 35.0% |
| !! | TGTGAATAGTGTTGATGAAG+AGG | + | chr5.4:15776376-15776395 | MS.gene72669:CDS | 35.0% |
| !!! | CAAGATCATTTGGTTTTGCA+AGG | + | chr5.4:15776774-15776793 | MS.gene72669:CDS | 35.0% |
| !!! | CGTGTTACTTTTACTATCAC+CGG | + | chr5.4:15775750-15775769 | MS.gene72669:CDS | 35.0% |
| AAGGAACAATATCGACGACA+AGG | + | chr5.4:15776650-15776669 | MS.gene72669:CDS | 40.0% | |
| AATGGGTGAAGTGATTTCAG+TGG | + | chr5.4:15776574-15776593 | MS.gene72669:CDS | 40.0% | |
| ACTACCCTGACAGAAAACAT+TGG | - | chr5.4:15775673-15775692 | None:intergenic | 40.0% | |
| ATTACTTCTGCATTCCTCAG+AGG | + | chr5.4:15776733-15776752 | MS.gene72669:CDS | 40.0% | |
| CAAAAACGCTTAAACTTCCG+TGG | + | chr5.4:15776527-15776546 | MS.gene72669:CDS | 40.0% | |
| CTCGATTGAGACCTAAACAA+CGG | - | chr5.4:15776073-15776092 | None:intergenic | 40.0% | |
| GAGAAACAGTTAACTCGCTT+AGG | + | chr5.4:15776701-15776720 | MS.gene72669:CDS | 40.0% | |
| GTCGTTGTTGGATTGTCAAA+GGG | + | chr5.4:15775839-15775858 | MS.gene72669:CDS | 40.0% | |
| TGGGTTCGCATGATCATATA+GGG | + | chr5.4:15775868-15775887 | MS.gene72669:CDS | 40.0% | |
| TTGTCGTCGATATTGTTCCT+TGG | - | chr5.4:15776651-15776670 | None:intergenic | 40.0% | |
| ! | GCTCTTGGTGTATTGTATGA+GGG | + | chr5.4:15776431-15776450 | MS.gene72669:CDS | 40.0% |
| ! | GTATTTTGTTGGAAGACGGA+AGG | + | chr5.4:15775817-15775836 | MS.gene72669:CDS | 40.0% |
| !! | GGTTTTGCAGTGTAGTTTGT+GGG | + | chr5.4:15776273-15776292 | MS.gene72669:CDS | 40.0% |
| !! | TGGTTTTGCAGTGTAGTTTG+TGG | + | chr5.4:15776272-15776291 | MS.gene72669:CDS | 40.0% |
| !! | TTTCAGTGCTTTGAGACACA+TGG | - | chr5.4:15776861-15776880 | None:intergenic | 40.0% |
| !!! | TGTTCAGTTTGTGGTTTTGG+AGG | + | chr5.4:15776005-15776024 | MS.gene72669:CDS | 40.0% |
| AGTGTTCATAGCATCCTCTG+AGG | - | chr5.4:15776750-15776769 | None:intergenic | 45.0% | |
| CAAGCAATGCAAGGCCATAT+AGG | - | chr5.4:15776887-15776906 | None:intergenic | 45.0% | |
| CAGAGGATGCTATGAACACT+TGG | + | chr5.4:15776750-15776769 | MS.gene72669:CDS | 45.0% | |
| CTGGGTTCGCATGATCATAT+AGG | + | chr5.4:15775867-15775886 | MS.gene72669:CDS | 45.0% | |
| GATTGAGACCTAAACAACGG+AGG | - | chr5.4:15776070-15776089 | None:intergenic | 45.0% | |
| GATTGTCAAAGGGAAGCTCT+GGG | + | chr5.4:15775849-15775868 | MS.gene72669:CDS | 45.0% | |
| GGACAAAACCATTCACCAAG+CGG | - | chr5.4:15776098-15776117 | None:intergenic | 45.0% | |
| GGTCGTTGTTGGATTGTCAA+AGG | + | chr5.4:15775838-15775857 | MS.gene72669:CDS | 45.0% | |
| TCGTCGATATTGTTCCTTGG+TGG | - | chr5.4:15776648-15776667 | None:intergenic | 45.0% | |
| ! | AGGGACCAATGTTTTCTGTC+AGG | + | chr5.4:15775665-15775684 | MS.gene72669:CDS | 45.0% |
| ! | GGCTCTTGGTGTATTGTATG+AGG | + | chr5.4:15776430-15776449 | MS.gene72669:CDS | 45.0% |
| ! | GGGACCAATGTTTTCTGTCA+GGG | + | chr5.4:15775666-15775685 | MS.gene72669:CDS | 45.0% |
| ! | GGTTGCAGAGATAGTTTTCG+TGG | + | chr5.4:15776622-15776641 | MS.gene72669:CDS | 45.0% |
| !!! | TTGTGGTTTTGGAGGTGACT+TGG | + | chr5.4:15776013-15776032 | MS.gene72669:CDS | 45.0% |
| GCATTCCACCTCCGTTGTTT+AGG | + | chr5.4:15776059-15776078 | MS.gene72669:CDS | 50.0% | |
| GGATTGTCAAAGGGAAGCTC+TGG | + | chr5.4:15775848-15775867 | MS.gene72669:CDS | 50.0% | |
| TGAGACCTAAACAACGGAGG+TGG | - | chr5.4:15776067-15776086 | None:intergenic | 50.0% | |
| TTTGGATGCGTAAAGGCCGT+AGG | + | chr5.4:15776224-15776243 | MS.gene72669:CDS | 50.0% | |
| ! | ATCGAGTTCCGCTTGGTGAA+TGG | + | chr5.4:15776087-15776106 | MS.gene72669:CDS | 50.0% |
| ! | GATAGTTTTCGTGGCCACCA+AGG | + | chr5.4:15776631-15776650 | MS.gene72669:CDS | 50.0% |
| CAACGGAGGTGGAATGCAGA+AGG | - | chr5.4:15776056-15776075 | None:intergenic | 55.0% | |
| GGAAGACGGAAGGTCGTTGT+TGG | + | chr5.4:15775827-15775846 | MS.gene72669:CDS | 55.0% | |
| GGTCTCAATCGAGTTCCGCT+TGG | + | chr5.4:15776080-15776099 | MS.gene72669:CDS | 55.0% | |
| ACCCGCATGAGACTCGAAGC+CGG | - | chr5.4:15775772-15775791 | None:intergenic | 60.0% | |
| ! | ACCGGCTTCGAGTCTCATGC+GGG | + | chr5.4:15775768-15775787 | MS.gene72669:CDS | 60.0% |
| !! | CACCGGCTTCGAGTCTCATG+CGG | + | chr5.4:15775767-15775786 | MS.gene72669:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15775621 | 15776907 | 15775621 | ID=MS.gene72669 |
| chr5.4 | mRNA | 15775621 | 15776907 | 15775621 | ID=MS.gene72669.t1;Parent=MS.gene72669 |
| chr5.4 | exon | 15775621 | 15776907 | 15775621 | ID=MS.gene72669.t1.exon1;Parent=MS.gene72669.t1 |
| chr5.4 | CDS | 15775621 | 15776907 | 15775621 | ID=cds.MS.gene72669.t1;Parent=MS.gene72669.t1 |
| Gene Sequence |
| Protein sequence |
