AlfalfaGEDB | MS.gene72670

M. sativa cultivar XinJiangDaYe / MS.gene72670

KEGG: K08852
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006139 GO:0006396 GO:0006397 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140098 GO:1901265 GO:1901360 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01011.24 PF06479.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72670.t1	XP_003612390.1	97.9	904	19	0	1	904	1	904	0.00E+00	1747.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72670.t1	Q93VJ2	45.0	886	401	25	55	899	35	875	6.6e-181	636.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72670.t1	G7K1A9	97.9	904	19	0	1	904	1	904	0.0e+00	1747.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72670.t1	MTR_5g024510	97.898	904	19	0	1	904	1	904	0.0	1831
MS.gene72670.t1	MTR_5g024510	98.713	777	10	0	128	904	6	782	0.0	1589
MS.gene72670.t1	MTR_5g024510	97.884	756	16	0	1	756	1	756	0.0	1528
MS.gene72670.t1	MTR_8g073190	57.603	901	276	18	30	900	20	844	0.0	955
MS.gene72670.t1	MTR_8g072590	41.060	755	301	24	48	789	25	648	1.51e-156	474
MS.gene72670.t1	MTR_6g065690	62.393	117	6	2	350	466	1	79	3.29e-34	128
MS.gene72670.t1	MTR_6g065690	75.000	48	7	1	638	680	82	129	6.76e-13	67.8
MS.gene72670.t1	MTR_7g113490	27.715	267	148	8	506	767	104	330	1.11e-18	91.7
MS.gene72670.t1	MTR_1g105290	26.316	266	151	8	507	767	92	317	5.38e-18	88.6
MS.gene72670.t1	MTR_1g105290	26.316	266	151	8	507	767	92	317	5.70e-18	89.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72670.t1	AT2G17520	68.315	445	128	3	468	901	395	837	0.0	637
MS.gene72670.t1	AT5G24360	45.227	880	395	26	60	899	43	875	0.0	635
MS.gene72670.t1	AT5G24360	44.937	879	397	25	61	899	50	881	0.0	632
MS.gene72670.t1	AT5G24360	45.309	874	391	26	66	899	35	861	0.0	632
MS.gene72670.t1	AT3G11870	42.794	451	212	14	480	900	119	553	1.08e-95	312
MS.gene72670.t1	AT3G06030	28.571	266	146	8	506	767	104	329	1.10e-21	101
MS.gene72670.t1	AT1G54960	25.405	370	194	15	488	841	74	377	8.38e-19	92.0
MS.gene72670.t1	AT1G54960	25.405	370	194	15	488	841	74	377	8.38e-19	92.0
MS.gene72670.t1	AT1G09000	27.027	296	160	10	488	767	75	330	1.31e-18	91.3
MS.gene72670.t1	AT1G09000	27.027	296	160	10	488	767	75	330	2.21e-18	90.9

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Find 201 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGTTACGGCACTGG+TGG	0.625351	5.4:-15783943	MS.gene72670:CDS
AAAATCACCTATGATAGTAA+TGG	0.555445	5.4:-15782176	MS.gene72670:CDS
AAAGATGGAGCTGTTATACT+TGG	0.504620	5.4:-15782830	MS.gene72670:CDS
AACAGCAACATAATCAGCAA+CGG	0.639691	5.4:+15782868	None:intergenic
AACTTTAGTAAAAGTGGAGA+TGG	0.524497	5.4:+15781444	None:intergenic
AAGAGAGAGTTGTTGGGATT+GGG	0.331180	5.4:+15784043	None:intergenic
AAGAGTGATAGATTTCTCCC+CGG	0.666927	5.4:-15782251	MS.gene72670:CDS
AAGGAGCACTGTATTTGAAG+TGG	0.567852	5.4:-15782801	MS.gene72670:CDS
AAGGGAAGTTGATCTGAGCA+GGG	0.657506	5.4:-15782108	MS.gene72670:CDS
AAGTAGTCATTGAATCCTTC+CGG	0.429425	5.4:+15778229	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAAATCAAACCGTCG+GGG	-	chr5.4:15778968-15778987	MS.gene72670:intron	30.0%
AAATATGACAGAGAATGGTT+GGG	-	chr5.4:15782749-15782768	MS.gene72670:CDS	30.0%
AACTTTAGTAAAAGTGGAGA+TGG	+	chr5.4:15780810-15780829	None:intergenic	30.0%
AAGTTATATTCCCAGGAAAT+TGG	-	chr5.4:15783175-15783194	MS.gene72670:intron	30.0%
AATAATCAGTCCTAACTATC+TGG	+	chr5.4:15779648-15779667	None:intergenic	30.0%
ACATATGAATCCATCGTTTA+TGG	+	chr5.4:15782497-15782516	None:intergenic	30.0%
AGAATGACATACCTTAGATT+GGG	+	chr5.4:15782377-15782396	None:intergenic	30.0%
AGACATCAAAATTATCTTGG+AGG	+	chr5.4:15779289-15779308	None:intergenic	30.0%
AGTTATGTAGATTAACACGT+AGG	+	chr5.4:15782070-15782089	None:intergenic	30.0%
ATGAACTAGGAATAATACAC+CGG	-	chr5.4:15781645-15781664	MS.gene72670:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	15778126	15784147	15778126	ID=MS.gene72670
chr5.4	mRNA	15778126	15784147	15778126	ID=MS.gene72670.t1;Parent=MS.gene72670
chr5.4	exon	15783767	15784147	15783767	ID=MS.gene72670.t1.exon1;Parent=MS.gene72670.t1
chr5.4	CDS	15783767	15784147	15783767	ID=cds.MS.gene72670.t1;Parent=MS.gene72670.t1
chr5.4	exon	15781438	15782903	15781438	ID=MS.gene72670.t1.exon2;Parent=MS.gene72670.t1
chr5.4	CDS	15781438	15782903	15781438	ID=cds.MS.gene72670.t1;Parent=MS.gene72670.t1
chr5.4	exon	15780485	15780657	15780485	ID=MS.gene72670.t1.exon3;Parent=MS.gene72670.t1
chr5.4	CDS	15780485	15780657	15780485	ID=cds.MS.gene72670.t1;Parent=MS.gene72670.t1
chr5.4	exon	15779889	15780135	15779889	ID=MS.gene72670.t1.exon4;Parent=MS.gene72670.t1
chr5.4	CDS	15779889	15780135	15779889	ID=cds.MS.gene72670.t1;Parent=MS.gene72670.t1
chr5.4	exon	15778584	15778887	15778584	ID=MS.gene72670.t1.exon5;Parent=MS.gene72670.t1
chr5.4	CDS	15778584	15778887	15778584	ID=cds.MS.gene72670.t1;Parent=MS.gene72670.t1
chr5.4	exon	15778126	15778269	15778126	ID=MS.gene72670.t1.exon6;Parent=MS.gene72670.t1
chr5.4	CDS	15778126	15778269	15778126	ID=cds.MS.gene72670.t1;Parent=MS.gene72670.t1

Gene Sequence

>MS.gene72670

ATGAATCATTCCGTTTCAATCTTCATCTTCTTCATCATCTCAATCTTCACCTGCATCGTTGCAGATGTATCCATCCCCACCTCCCAATCCCAACAACTCTCTCTTCTCCACAACGGTTTCTCTCCCTCTCCTCCCGCTCTTCCACCGCCATCGTCGCCGTTAGTTTCGAATTCATTGGACAGAAAACCTGTTACGGCACTGGTGGCTGGTTTAGACGGAACTATTTATCTTGTTGAAAGTGCTTCTGGGAGGGTAATTTGGTCTTTTTCATCTGGTTCACCGATCTACCATTCCTCTGCCAATACTCCTCCGTCTTCTGGTCTTATTGAATGTGGTGATGACTGGGAATTAATCTTTCATGATCCCCACTTTGGTAAAACGGTATTATCATTTTAACAGTGTATGTTTTTATTTTTTTACTTTTACTTTGGGAATTTTTTACCTTAATGTGTGTTTGGTTCTGCGGCGACAAAAATTGATTTTGATTGAATTGTTTAGGTAAATTGATTTTAGTTAAAATTGAGTTGGATGTGAAGTGGTTTATGTCTGGATACATTCGTATAAAAACGAGTTGAACAATAAATTTGAGTGTCAATAGCTACTAATTGTAGTTTCAGGTTAGAATCATTTTTAGTCAACATCACCCAAACATGTCTAAATCTGTTTTGATAACTAGTTTAATTAAGTGCTTATAGCATATATGCTTATCATATAGCTAGCCACTATGGCGTCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTGTTGTATGCTTATCATATAAGTTTTTATGTATAAGCTATTTCTGGAACAAATGACAAAATAAAATCAAACCGTCGGGGGGGAGGTTGGGGCTGGGGAACTGAACTAGTTTGAGCTAAGGGTTAAAGGAGTTGGACATCCTGAGTCCAAACCGAGACAAAAGGAGTAAATACTAATCTAAAAAAAACTAGATAAGTTCAAATAAGCCAATCCAACTTATTAACCTTAAGTTACATTTTAAAGTTGTATAATCAATTTTGACACTATGAATCCAAACACACGCTAAGCGAACACATCAAATTCATAATCATGGTGTTACGTACGCTATTCCCCTTTGTAACTCACCAATTGCAATGGCTGAGTTGAGTGAAGAGTCCTCCAAGATAATTTTGATGTCTGTCATGTTGACTTTTCTTCAATGTATGGTCAATAAGTTGTGTTTAAACTTGAAACCTGCAGAGACTCAAGGAATCCGTTGCTGATTATGTTGCTGTTACGCCTATTGTGTCGAAAGATGGAGCTGTTATACTTGGATCCAAAAGGAGCACTGTATTTGAAGTGGATGCTAAAACAGGAAAGCTCCTTAGAAGCTATGGTGCTGCTGATTTTCGTAATGTTTCTACTACTGCAATGTGGAGTGGTGACAAGGACAGTGAGGGTGTTACTAACGACTTCCGTGCAAATAATAAGGAGCTTGCTGATCCAGCAAAGCTTAATTTACCAGAGTTTTTGCTCCAGATAGTTAGGACTGATTATTTTTTACAATCTGTGGGTCCTGGTTCAGGAATAGTGTTATGGACTATGTCAGTAGCTGAATTTGAGGCTGTATTATTTTGCCAACATAATGAAAATCCTACCTTGACAGCTTCACTTGATGCAGAAGGTGAGTATGCTTATGATGTTGACAGTGGCTTGGATTTTGCTATGCCGTATGCGTGTCCTGACAGAAAACTCAGAGAAGTCTATCGCCAACGAAAGAATTTTCTGTTTGAACCTGATAAAATTCAAAGATTATCTGATGTTGATGCTTATCAAGAGAAAGGTATGCTCCCAATGCCCGATTTAAAGCTGATGCTTCCATCACAACCTAAGAGTGATAGATTTCTCCCCGGTCATGGTGGTAATATGATGCTACCTGTGCCTGTGCCAAATTATATGCAGCCGAAAATCACCTATGATAGTAATGGTAATGCAGTTATGCTTCCGCAGCCTCCCATGGAGATCACTGCACCAAGGGAAGTTGATCTGAGCAGGGTGATTGAATTGTCAATGTCATTATTGGTTGTATTATCTGTGGTCTTTCTTTTGATGTTGTACCAAAATCGGTTAAAAAATAATGTTACATCGAAGGTCCAAATCAGTGACTCAGATTTGAAAAGTTCGCCTTCTAAAAAAAAGAGAGTACGTAAGTCAGGAAAAAACAACATTGTTGTTGAGGAGAATATACGAATTCATAAGGAAGCAGAAAATGAGGCACGGTTGCACTATAATAATGTTAATGGACGCAGGATCGGTAAACTGTGTGTATTAAATAAAGAAATCGCAAAGGGAAGTAATGGCACCATTGTCCTTGAAGGGATATATGAAGGTCGGACAGTTGCTGTCAAACGTCTTGTTCAGGCTCATCATGATGTAGCTCATAAAGAAATCCAAAACCTCATTGCTTCTGACTTTCATCCAAATATTGTTCGATGGTATGGTGTGGAATATGATCACGATTTTGTTTACCTTGCTCTGGAGCGTTGTGCATGCAACTTGGATGATCTGATTACTTTTTATTCAGATTTGTCAGAAAACTCGGTTTTAAGTAAGGATCAAGCTTTTGATATTTTTAAGAAGGCCCAAATAGAGGCACAGAAGGATGATATGCAATGTCTTTGGAAATCGAATGGTTATCCATCTCCACTTTTACTAAAGTTGATGAGGTCAGTAAAGCAACTTGATTTGATGATATATATGATTACAATTGTGACCTTCCTAGATATTTTTTTTTTTTTTAAATTGTAATATTTCTTTCTCAGCCAAGACAGAATAAATGTTATGTGAAAGCTACTAAAATATTTGAGACTAGTGAGATACATCATGTAGGTATGAGTGTTACAGTCCCATCAGTGAACAGGGTAGCAACTAGCAACTAACAAGTTTAACTAACATGTCCTTAATGTTTTGACATTAGAAATTAAAGCAAAGGTTTTATATGATTATTCAGTTATGGGTTAAGAAATGTACACTGTACTTTGTTAAGGTTGATGTTTAGGAGCTTTGCTGCAATTAAGGAGAGACAATTTTTATGAATAACAAGGATGGGTGATAAACAGGGATACTAGATCTAACTTCTAAGTTAGCAGTTTCAATAAAGAGATTATGAGATGATTGACTAGAATAATTTAGGCATTACCTTAGAGTTGGAGAATCCACGAGGCTGAGAAAGATACACGGACAACATAATTGAGGTAAAAGAGATACGTTAGCAAAAGATCGAAGAATGGTAAACATTGAATCCGATTGAATTGTTAGGAGGAATACACAAAGGGTCCTGTTTTGTTTCCATTTACAACACCTATATTTAAGCTAAGTATCGGAGGTTGATAGTTGTCTTCATTTAGTGATAGAGCATGAGTGTCCACTAACTCCGTGTTTAAATTACACCTATTTTTATTTTATTTTATTTTTGTTGACATCATGTTATTTTTGTCCACTAACAGGGATGTGGTTTCTGGGCTTGTCCATTTGCATGAACTAGGAATAATACACCGGGATTTGAAACCCCAAAATGTTTTGTTAATCAAGGAAAGGTCATTATGTGCCAAACTTTCTGATATGGGGATTAGTAAACGACTTCTTGAAGACATGTCTTCTTTAGGCCATAGTTCTACTGGTGAGTACAAAAGTTTGTGTTTTTTAGCATTCACGATTACTAATTAGCAATGTTATTAAACTCAGGACTAGTCGTTGACTTAGTTACTTGGTTTGTCGGTCATTGGTCGAACTAATGAGTCTCTAGTGGAACCACATGAATCAGTATATACTAAATATATAAATATAAATCATTTTTCTAAGAAATGTACTATTTATTTTCTGTGTATATGGTTAAAATCTCTCCAACCATACATTCCATATGCTAATTCAAACATGTAGTTATTTTCTTAGTCTAATCCTACGTGTTAATCTACATAACTTGATCATTATTCCTGCTCATACAATAATGTTTAATGACTTATTTGCAGGCTGTGGCAGTTCGGGTTGGCAAGCGCCAGAGCAGCTTCTTCAGGGACGCCAAACACGGGCTGTAGATTTGTTTAGTTTAGGTTGTGTCCTCTTTTTCTGTATGACAGCAGGAAGACATCCATTTGGAGAGCGACTTGAGCGTGATGTCAACATTGTTAAAAATAAAAAAGATCTTTTCTTAGTAGAGTTTCTTCCTGAAGCAGAGGATCTAATTTCTTGTTTATTAAACCCTGACCCCAATCTAAGGTATGTCATTCTCGTTCAATGTGTTTTCTAGGAGATTAGAATTATATTCTCTCACACCTTCATTAATAGTTTGCATTTTGATATGACTTCATTGATGTATAGCATAAAGCCATAAACGATGGATTCATATGTAGAATGTCGTTGTTTAGTTTGCTAGTTGCCTTCTGTGAATAACATCTCAATTGAGATTATTCCTCTAGTGTTTCAAAGTTCAAATCAACTGGATCTTTATATTAATATGTAGTGATGGATATTCTGCATTTTTATTCTTTCAGAAACCTGGCCATCTCCTGATATATGTCTGAGACTTGTTTTATGTTGAGCCCAACATTTTTATATGATGTGATTTAATAAATAAATAAATAAATATGACAGAGAATGGTTGGGACCTGTTAGATATATAGGAACTCATCCTGAATGCACTGCAGAAAGCAGTTACTGGCAGATATTACAGTGACCTTCAATCAGAGTTACTGAAAACCTTGATTAAATGCTACAAGCCTACAACTGGCTGTGTTAAGTCCAGTAAGCATTTAAAATTTTTCAAGATAAGTATTCATGCGAGGATATTCATTTTGGTGCTTTTGGCCCATGGATGAATCCTAAAAGGGTGGAAGGACATTGCAAGATAGTACTACTCCGGTTTTAATATATGCAAAAGTCAAAATGTATTCGGTCTTTATTTGTGCTAAATACATTTTGACTTTTGCTTATATTTAAAACCGGAGGGATTAGTTCATTTGTCTATCACATGCATGGAACTGATGGAAGGATAGGGTGGGAGCAAAATAAGTTATATTCCCAGGAAATTGGCAAATGGATTATGTTGCATGTAATTGTCAAATTAACAAATCTGAGATTTTACTGCTTAAACTATTAACAAATGGGCTGTATTATAGCTCTTACTAATTGGAGGAACCGGAAGTATATAGATTTGTGTTTGTCTTGTCTGGTTAGAAGGTAGCACTTTCACTAAAGAATTTTTTTCATTTAATTGTCAGGCCAAAGGCGATTGAAGTATTGCATCATCCTCTATTTTGGAGTTCTGAGATGAGACTTTCATTTCTTCGCGACGTTAGTGACAGAGTGGAACTTGAAGATAGAGAGACTAATTCTGTTCTTTTGAATGTATTAGAGAGCACTGCTCCACTGGCTTTAGGTGCAAAATGGGACGAAAAGATGGAACCAGCTTTCATTGCCAACATTGGTCGTTACAGGCGATATAAATTTGACAGCGTCCGAGACTTGTTGAGGGTCATGAGAAACAAGCTAAATCATTTTAGGGAATTGCCTGCAGAAATTCAGGTTTCTTCTTGGACTAGCAATTTTGCATTTTATGTTTTCCTTTTTTATCTGGTCGAAGGTTAGGCTTGTCTAAATAAGTTGAAATCCAGGTTTCTTCTTGGACCGACACTTGAGTAGTGATTTTATCTTGCAACATCCAAACATTTTCTATTTTTCTAAACAACAATCATAAGAATTTCCTGAAGATGATCCTTATTCAATTTGCTGGTGATAGCTTTTCATATGAGATCTTAAAATGCATCTTTTTTAACACGTCTCCAAGAACATATCATAGACATGCGTGACTTATAATTTCTTTCTTGCTGGTTTATCAGGAACTGATAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTTCCTAGGCTCTTGATTGAAGTGTACAAAGTTATCTGCAACTACTGCAAGGATGATGAATGTTTTCAAAGATATTTTAGAGACATTGATTAA

Protein sequence

>MS.gene72670.t1

MNHSVSIFIFFIISIFTCIVADVSIPTSQSQQLSLLHNGFSPSPPALPPPSSPLVSNSLDRKPVTALVAGLDGTIYLVESASGRVIWSFSSGSPIYHSSANTPPSSGLIECGDDWELIFHDPHFGKTRLKESVADYVAVTPIVSKDGAVILGSKRSTVFEVDAKTGKLLRSYGAADFRNVSTTAMWSGDKDSEGVTNDFRANNKELADPAKLNLPEFLLQIVRTDYFLQSVGPGSGIVLWTMSVAEFEAVLFCQHNENPTLTASLDAEGEYAYDVDSGLDFAMPYACPDRKLREVYRQRKNFLFEPDKIQRLSDVDAYQEKGMLPMPDLKLMLPSQPKSDRFLPGHGGNMMLPVPVPNYMQPKITYDSNGNAVMLPQPPMEITAPREVDLSRVIELSMSLLVVLSVVFLLMLYQNRLKNNVTSKVQISDSDLKSSPSKKKRVRKSGKNNIVVEENIRIHKEAENEARLHYNNVNGRRIGKLCVLNKEIAKGSNGTIVLEGIYEGRTVAVKRLVQAHHDVAHKEIQNLIASDFHPNIVRWYGVEYDHDFVYLALERCACNLDDLITFYSDLSENSVLSKDQAFDIFKKAQIEAQKDDMQCLWKSNGYPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLLIKERSLCAKLSDMGISKRLLEDMSSLGHSSTGCGSSGWQAPEQLLQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNKKDLFLVEFLPEAEDLISCLLNPDPNLRPKAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRETNSVLLNVLESTAPLALGAKWDEKMEPAFIANIGRYRRYKFDSVRDLLRVMRNKLNHFRELPAEIQELIGPVPEGFNDYFASRFPRLLIEVYKVICNYCKDDECFQRYFRDID