Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72704.t1 | XP_024632961.1 | 88.1 | 720 | 74 | 3 | 1 | 708 | 81 | 800 | 0.00E+00 | 1285 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72704.t1 | Q9SZL8 | 26.4 | 598 | 374 | 10 | 6 | 601 | 104 | 637 | 1.3e-59 | 232.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72704.t1 | D3YBB9 | 79.8 | 709 | 123 | 4 | 2 | 700 | 114 | 812 | 0.0e+00 | 1139.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene72704.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72704.t1 | MTR_0558s0020 | 89.610 | 231 | 24 | 0 | 1 | 231 | 66 | 296 | 2.81e-154 | 449 |
MS.gene72704.t1 | MTR_6g090505 | 84.388 | 237 | 37 | 0 | 1 | 237 | 1 | 237 | 8.77e-144 | 425 |
MS.gene72704.t1 | MTR_6g090505 | 67.647 | 102 | 6 | 2 | 332 | 431 | 230 | 306 | 3.38e-34 | 134 |
MS.gene72704.t1 | MTR_6g090505 | 75.510 | 49 | 12 | 0 | 503 | 551 | 314 | 362 | 8.07e-11 | 64.7 |
MS.gene72704.t1 | MTR_1g083640 | 90.686 | 204 | 19 | 0 | 1 | 204 | 81 | 284 | 4.27e-137 | 404 |
MS.gene72704.t1 | MTR_8g446020 | 80.263 | 228 | 45 | 0 | 4 | 231 | 29 | 256 | 3.14e-132 | 391 |
MS.gene72704.t1 | MTR_0337s0060 | 58.544 | 316 | 31 | 4 | 383 | 695 | 21 | 239 | 8.49e-109 | 330 |
MS.gene72704.t1 | MTR_2g014100 | 87.209 | 172 | 22 | 0 | 1 | 172 | 74 | 245 | 1.83e-106 | 324 |
MS.gene72704.t1 | MTR_0337s0040 | 78.125 | 192 | 42 | 0 | 4 | 195 | 30 | 221 | 3.28e-106 | 323 |
MS.gene72704.t1 | MTR_1g055240 | 88.028 | 142 | 17 | 0 | 27 | 168 | 3 | 144 | 4.05e-87 | 270 |
MS.gene72704.t1 | MTR_0019s0290 | 82.237 | 152 | 27 | 0 | 18 | 169 | 9 | 160 | 3.69e-86 | 268 |
MS.gene72704.t1 | MTR_3g028680 | 81.646 | 158 | 26 | 1 | 554 | 708 | 1 | 158 | 1.62e-84 | 265 |
MS.gene72704.t1 | MTR_3g008240 | 86.957 | 138 | 18 | 0 | 1 | 138 | 66 | 203 | 2.17e-81 | 257 |
MS.gene72704.t1 | MTR_4g040430 | 86.232 | 138 | 15 | 1 | 1 | 138 | 65 | 198 | 1.28e-79 | 253 |
MS.gene72704.t1 | MTR_2g067090 | 77.419 | 155 | 32 | 1 | 557 | 708 | 99 | 253 | 2.14e-75 | 245 |
MS.gene72704.t1 | MTR_4g133495 | 62.088 | 182 | 43 | 2 | 512 | 690 | 88 | 246 | 2.43e-66 | 220 |
MS.gene72704.t1 | MTR_4g133340 | 62.088 | 182 | 43 | 2 | 512 | 690 | 88 | 246 | 2.43e-66 | 220 |
MS.gene72704.t1 | MTR_5g071590 | 81.553 | 103 | 19 | 0 | 1 | 103 | 78 | 180 | 2.43e-57 | 193 |
MS.gene72704.t1 | MTR_6g051425 | 32.967 | 273 | 155 | 5 | 21 | 277 | 64 | 324 | 3.98e-36 | 139 |
MS.gene72704.t1 | MTR_1281s0010 | 82.540 | 63 | 11 | 0 | 1 | 63 | 47 | 109 | 1.17e-29 | 114 |
MS.gene72704.t1 | MTR_2g067130 | 61.728 | 81 | 25 | 2 | 631 | 708 | 46 | 123 | 8.22e-22 | 92.8 |
MS.gene72704.t1 | MTR_1g070355 | 25.714 | 280 | 192 | 4 | 21 | 298 | 119 | 384 | 2.50e-16 | 83.2 |
MS.gene72704.t1 | MTR_0337s0050 | 77.778 | 36 | 8 | 0 | 195 | 230 | 14 | 49 | 6.19e-14 | 67.8 |
MS.gene72704.t1 | MTR_0402s0040 | 26.000 | 150 | 96 | 3 | 20 | 169 | 71 | 205 | 1.69e-12 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72704.t1 | AT4G38180 | 27.844 | 589 | 349 | 12 | 20 | 601 | 118 | 637 | 1.71e-68 | 240 |
MS.gene72704.t1 | AT4G15090 | 25.241 | 622 | 398 | 11 | 59 | 677 | 121 | 678 | 9.52e-59 | 213 |
MS.gene72704.t1 | AT4G15090 | 25.241 | 622 | 398 | 11 | 59 | 677 | 121 | 678 | 9.52e-59 | 213 |
MS.gene72704.t1 | AT4G15090 | 25.241 | 622 | 398 | 11 | 59 | 677 | 121 | 678 | 9.52e-59 | 213 |
MS.gene72704.t1 | AT4G15090 | 25.241 | 622 | 398 | 11 | 59 | 677 | 121 | 678 | 9.52e-59 | 213 |
MS.gene72704.t1 | AT4G15090 | 25.241 | 622 | 398 | 11 | 59 | 677 | 121 | 678 | 9.52e-59 | 213 |
MS.gene72704.t1 | AT2G27110 | 25.963 | 597 | 368 | 15 | 63 | 655 | 108 | 634 | 2.26e-53 | 198 |
MS.gene72704.t1 | AT2G27110 | 25.963 | 597 | 368 | 15 | 63 | 655 | 108 | 634 | 2.26e-53 | 198 |
MS.gene72704.t1 | AT2G27110 | 26.916 | 509 | 315 | 11 | 149 | 655 | 36 | 489 | 5.05e-53 | 195 |
MS.gene72704.t1 | AT3G06250 | 24.613 | 581 | 323 | 14 | 20 | 597 | 235 | 703 | 1.68e-48 | 183 |
MS.gene72704.t1 | AT3G06250 | 24.613 | 581 | 323 | 14 | 20 | 597 | 235 | 703 | 1.68e-48 | 183 |
MS.gene72704.t1 | AT3G06250 | 24.613 | 581 | 323 | 14 | 20 | 597 | 235 | 703 | 1.68e-48 | 183 |
MS.gene72704.t1 | AT1G76320 | 24.728 | 643 | 392 | 18 | 19 | 655 | 41 | 597 | 8.85e-48 | 180 |
MS.gene72704.t1 | AT1G76320 | 25.333 | 600 | 377 | 16 | 60 | 655 | 65 | 597 | 2.01e-47 | 179 |
MS.gene72704.t1 | AT1G76320 | 25.333 | 600 | 377 | 16 | 60 | 655 | 65 | 597 | 2.01e-47 | 179 |
MS.gene72704.t1 | AT1G76320 | 25.333 | 600 | 377 | 16 | 60 | 655 | 65 | 597 | 2.43e-47 | 179 |
MS.gene72704.t1 | AT3G22170 | 24.615 | 455 | 289 | 8 | 146 | 598 | 216 | 618 | 1.37e-45 | 175 |
MS.gene72704.t1 | AT3G22170 | 24.615 | 455 | 289 | 8 | 146 | 598 | 216 | 618 | 1.37e-45 | 175 |
MS.gene72704.t1 | AT4G38170 | 24.532 | 481 | 295 | 13 | 171 | 639 | 24 | 448 | 3.03e-44 | 167 |
MS.gene72704.t1 | AT5G18960 | 24.444 | 585 | 322 | 16 | 20 | 597 | 256 | 727 | 2.34e-42 | 165 |
MS.gene72704.t1 | AT5G18960 | 24.444 | 585 | 322 | 16 | 20 | 597 | 256 | 727 | 2.34e-42 | 165 |
MS.gene72704.t1 | AT1G10240 | 24.872 | 587 | 352 | 18 | 21 | 595 | 95 | 604 | 1.93e-39 | 155 |
MS.gene72704.t1 | AT1G10240 | 24.872 | 587 | 352 | 18 | 21 | 595 | 95 | 604 | 1.93e-39 | 155 |
MS.gene72704.t1 | AT5G28530 | 23.770 | 610 | 373 | 16 | 5 | 596 | 84 | 619 | 4.40e-38 | 151 |
MS.gene72704.t1 | AT5G28530 | 23.607 | 610 | 370 | 17 | 5 | 596 | 84 | 615 | 4.48e-37 | 148 |
MS.gene72704.t1 | AT5G28530 | 23.607 | 610 | 370 | 17 | 5 | 596 | 84 | 615 | 4.48e-37 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 68 | 622 | 6.85e-37 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 27 | 581 | 9.22e-37 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 27 | 581 | 9.55e-37 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 68 | 622 | 1.07e-36 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 68 | 622 | 1.07e-36 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 68 | 622 | 1.07e-36 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 68 | 622 | 1.09e-36 | 148 |
MS.gene72704.t1 | AT2G32250 | 23.235 | 680 | 392 | 17 | 5 | 679 | 68 | 622 | 1.09e-36 | 148 |
MS.gene72704.t1 | AT1G80010 | 24.622 | 463 | 285 | 14 | 146 | 598 | 253 | 661 | 3.96e-33 | 136 |
MS.gene72704.t1 | AT1G52520 | 21.667 | 600 | 394 | 15 | 2 | 598 | 112 | 638 | 4.51e-31 | 130 |
MS.gene72704.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 155 | 419 | 106 | 369 | 2.23e-27 | 118 |
MS.gene72704.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 527 | 657 | 438 | 558 | 1.21e-12 | 71.6 |
MS.gene72704.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 155 | 419 | 163 | 426 | 3.12e-27 | 118 |
MS.gene72704.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 527 | 657 | 495 | 615 | 1.48e-12 | 71.6 |
MS.gene72704.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 155 | 419 | 163 | 426 | 3.12e-27 | 118 |
MS.gene72704.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 527 | 657 | 495 | 615 | 1.34e-12 | 71.6 |
MS.gene72704.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 155 | 419 | 163 | 426 | 3.12e-27 | 118 |
MS.gene72704.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 527 | 657 | 495 | 615 | 1.34e-12 | 71.6 |
MS.gene72704.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 155 | 419 | 177 | 440 | 3.16e-27 | 118 |
MS.gene72704.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 527 | 657 | 509 | 629 | 1.56e-12 | 71.6 |
MS.gene72704.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 155 | 419 | 163 | 426 | 3.45e-27 | 118 |
MS.gene72704.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 527 | 657 | 495 | 615 | 1.32e-12 | 71.6 |
MS.gene72704.t1 | AT4G19990 | 28.358 | 268 | 185 | 4 | 155 | 419 | 163 | 426 | 3.45e-27 | 118 |
MS.gene72704.t1 | AT4G19990 | 35.338 | 133 | 72 | 3 | 527 | 657 | 495 | 615 | 1.32e-12 | 71.6 |
MS.gene72704.t1 | AT5G28530 | 21.500 | 600 | 336 | 19 | 5 | 596 | 84 | 556 | 4.18e-19 | 92.4 |
MS.gene72704.t1 | AT5G28530 | 21.333 | 600 | 333 | 20 | 5 | 596 | 84 | 552 | 2.93e-18 | 89.7 |
Find 108 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5.4:+16259114 | MS.gene72704:CDS |
TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5.4:+16258805 | MS.gene72704:CDS |
AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5.4:-16259940 | None:intergenic |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5.4:+16259072 | MS.gene72704:CDS |
CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5.4:+16258021 | MS.gene72704:CDS |
TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5.4:+16258524 | MS.gene72704:intron |
CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5.4:+16258557 | MS.gene72704:CDS |
TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5.4:-16258651 | None:intergenic |
TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5.4:-16259934 | None:intergenic |
AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5.4:+16258846 | MS.gene72704:CDS |
TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5.4:+16259786 | MS.gene72704:CDS |
ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5.4:-16258669 | None:intergenic |
GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5.4:-16258071 | None:intergenic |
GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5.4:+16259369 | MS.gene72704:CDS |
TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5.4:+16258946 | MS.gene72704:CDS |
CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5.4:+16259778 | MS.gene72704:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 5.4:+16258078 | MS.gene72704:CDS |
ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5.4:+16258070 | MS.gene72704:CDS |
GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5.4:+16258945 | MS.gene72704:CDS |
TTCCTTCAAATACTATTATG+AGG | 0.392551 | 5.4:+16259246 | MS.gene72704:CDS |
GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 5.4:-16259662 | None:intergenic |
TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5.4:-16257541 | None:intergenic |
AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5.4:+16259926 | MS.gene72704:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5.4:-16259916 | None:intergenic |
GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5.4:+16259811 | MS.gene72704:CDS |
CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5.4:+16259494 | MS.gene72704:CDS |
GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5.4:-16259417 | None:intergenic |
CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5.4:-16259418 | None:intergenic |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5.4:+16257718 | MS.gene72704:CDS |
AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5.4:+16257600 | MS.gene72704:CDS |
TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5.4:-16258662 | None:intergenic |
GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5.4:+16257583 | MS.gene72704:CDS |
CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5.4:-16259595 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 5.4:+16257466 | MS.gene72704:CDS |
GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5.4:+16257748 | MS.gene72704:CDS |
TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5.4:+16258736 | MS.gene72704:CDS |
GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5.4:+16258900 | MS.gene72704:CDS |
ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5.4:+16259495 | MS.gene72704:CDS |
ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5.4:+16257432 | MS.gene72704:CDS |
GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 5.4:+16259452 | MS.gene72704:CDS |
GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5.4:+16257793 | MS.gene72704:CDS |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5.4:-16259248 | None:intergenic |
TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5.4:-16257577 | None:intergenic |
CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5.4:+16259887 | MS.gene72704:CDS |
TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5.4:+16257861 | MS.gene72704:CDS |
CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5.4:-16257688 | None:intergenic |
CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5.4:+16257426 | MS.gene72704:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5.4:+16259262 | MS.gene72704:CDS |
ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5.4:-16258537 | None:intergenic |
ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5.4:+16258847 | MS.gene72704:CDS |
CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5.4:+16257874 | MS.gene72704:CDS |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5.4:+16259086 | MS.gene72704:CDS |
GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5.4:-16259166 | None:intergenic |
GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5.4:+16257780 | MS.gene72704:CDS |
TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5.4:-16257966 | None:intergenic |
GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5.4:+16259886 | MS.gene72704:CDS |
AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5.4:-16257676 | None:intergenic |
CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5.4:+16258933 | MS.gene72704:CDS |
ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5.4:+16259431 | MS.gene72704:CDS |
TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5.4:-16257832 | None:intergenic |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5.4:+16259105 | MS.gene72704:CDS |
ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5.4:+16258951 | MS.gene72704:CDS |
TGTCTATAAGATATATAAGT+GGG | 0.514682 | 5.4:+16257636 | MS.gene72704:CDS |
GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5.4:-16259411 | None:intergenic |
TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5.4:-16259054 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 5.4:+16257477 | MS.gene72704:CDS |
TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5.4:+16259432 | MS.gene72704:CDS |
AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 5.4:+16259451 | MS.gene72704:CDS |
AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5.4:-16259049 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5.4:+16259263 | MS.gene72704:CDS |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5.4:+16257478 | MS.gene72704:CDS |
ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5.4:-16258682 | None:intergenic |
CTGAAATCCACCATGAATGT+TGG | 0.557140 | 5.4:+16259652 | MS.gene72704:CDS |
AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5.4:+16257928 | MS.gene72704:CDS |
GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5.4:+16257796 | MS.gene72704:CDS |
TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5.4:+16259738 | MS.gene72704:CDS |
ATGTCTATAAGATATATAAG+TGG | 0.572287 | 5.4:+16257635 | MS.gene72704:CDS |
GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5.4:-16259167 | None:intergenic |
TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5.4:-16259898 | None:intergenic |
TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5.4:-16259188 | None:intergenic |
TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5.4:+16257787 | MS.gene72704:CDS |
TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5.4:+16259779 | MS.gene72704:CDS |
ACCATATACACAGACCAGGC+TGG | 0.590176 | 5.4:+16258668 | MS.gene72704:CDS |
TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 5.4:+16259401 | MS.gene72704:CDS |
ATTTCTCAACGGTGTTCTTG+AGG | 0.597397 | 5.4:+16259774 | MS.gene72704:CDS |
TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5.4:-16259854 | None:intergenic |
GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5.4:+16257867 | MS.gene72704:CDS |
AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5.4:+16257781 | MS.gene72704:CDS |
AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5.4:+16257870 | MS.gene72704:CDS |
ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5.4:+16259741 | MS.gene72704:CDS |
ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5.4:+16259164 | MS.gene72704:CDS |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5.4:+16259249 | MS.gene72704:CDS |
TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 5.4:-16259686 | None:intergenic |
AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5.4:-16257526 | None:intergenic |
AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5.4:-16258902 | None:intergenic |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5.4:+16257801 | MS.gene72704:CDS |
ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5.4:-16259416 | None:intergenic |
GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5.4:+16258737 | MS.gene72704:CDS |
TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 5.4:-16259659 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5.4:+16259087 | MS.gene72704:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5.4:-16259637 | None:intergenic |
TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5.4:-16259208 | None:intergenic |
CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5.4:-16259513 | None:intergenic |
TCAAACCATATACACAGACC+AGG | 0.671057 | 5.4:+16258664 | MS.gene72704:CDS |
TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5.4:+16259496 | MS.gene72704:CDS |
GCATCTGAAGTATTTCTCAA+CGG | 0.677136 | 5.4:+16259763 | MS.gene72704:CDS |
ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5.4:+16259347 | MS.gene72704:CDS |
TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5.4:+16259348 | MS.gene72704:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAACCATAATTATAGTTTAA+TGG | - | chr5.4:16260313-16260332 | None:intergenic | 15.0% |
!! | AAACCATTAAACTATAATTA+TGG | + | chr5.4:16260307-16260326 | MS.gene72704:intron | 15.0% |
!!! | TGTTTTTTATGTTATAAGTT+AGG | + | chr5.4:16260066-16260085 | MS.gene72704:intron | 15.0% |
!! | ATGTCTATAAGATATATAAG+TGG | + | chr5.4:16257635-16257654 | MS.gene72704:CDS | 20.0% |
!! | CAATTCACAAAATAAGAAAT+CGG | + | chr5.4:16257426-16257445 | MS.gene72704:CDS | 20.0% |
!! | TGTCTATAAGATATATAAGT+GGG | + | chr5.4:16257636-16257655 | MS.gene72704:CDS | 20.0% |
!!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr5.4:16258253-16258272 | MS.gene72704:intron | 20.0% |
!!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr5.4:16258875-16258894 | MS.gene72704:CDS | 20.0% |
!!! | CTATACATTTTCACATTTTT+TGG | + | chr5.4:16260209-16260228 | MS.gene72704:intron | 20.0% |
!!! | TGAATGTTTATATTGATTGA+AGG | + | chr5.4:16258225-16258244 | MS.gene72704:intron | 20.0% |
! | AAAACACCTTGAAAAACATT+CGG | - | chr5.4:16258713-16258732 | None:intergenic | 25.0% |
! | AAACCAAATTAACAGTCTAA+TGG | - | chr5.4:16260270-16260289 | None:intergenic | 25.0% |
! | AAACCATTAGACTGTTAATT+TGG | + | chr5.4:16260264-16260283 | MS.gene72704:intron | 25.0% |
! | AATTCTTGATTGTTATGCAT+TGG | + | chr5.4:16260164-16260183 | MS.gene72704:intron | 25.0% |
! | ACAAAATAAGAAATCGGATA+AGG | + | chr5.4:16257432-16257451 | MS.gene72704:CDS | 25.0% |
! | ACCGAACAAACAATAAATAT+CGG | + | chr5.4:16258070-16258089 | MS.gene72704:CDS | 25.0% |
! | AGTACAAAATACTAACCTAA+TGG | - | chr5.4:16258096-16258115 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr5.4:16259072-16259091 | MS.gene72704:CDS | 25.0% |
! | TGAAATTTGAATGAATGTTC+TGG | + | chr5.4:16258143-16258162 | MS.gene72704:intron | 25.0% |
! | TGAATAAATGAAAAGCAAGA+TGG | - | chr5.4:16259211-16259230 | None:intergenic | 25.0% |
! | TGATGCTTTAACTAAAAAAG+CGG | + | chr5.4:16260097-16260116 | MS.gene72704:intron | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr5.4:16259246-16259265 | MS.gene72704:CDS | 25.0% |
! | TTTCGATGAGTTAACTAATT+TGG | + | chr5.4:16258805-16258824 | MS.gene72704:CDS | 25.0% |
!! | ACGCATTTATTACTATGTTT+TGG | + | chr5.4:16260237-16260256 | MS.gene72704:intron | 25.0% |
!! | AGGTTTAGAATTTAATGTTC+TGG | + | chr5.4:16258245-16258264 | MS.gene72704:intron | 25.0% |
!! | TGTTGTATTTTGTTCTGATT+TGG | + | chr5.4:16258501-16258520 | MS.gene72704:intron | 25.0% |
!! | TTGGTTTGAATATTATCTTC+TGG | + | chr5.4:16260183-16260202 | MS.gene72704:intron | 25.0% |
!! | TTTTCAATTACTGAGTTAAG+TGG | + | chr5.4:16260341-16260360 | MS.gene72704:intron | 25.0% |
!!! | ATGTTGATAATGATAATGAG+AGG | + | chr5.4:16259347-16259366 | MS.gene72704:CDS | 25.0% |
!!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr5.4:16257422-16257441 | None:intergenic | 25.0% |
!!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr5.4:16258252-16258271 | MS.gene72704:intron | 25.0% |
!!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr5.4:16257748-16257767 | MS.gene72704:CDS | 25.0% |
!!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr5.4:16258879-16258898 | MS.gene72704:CDS | 25.0% |
!!! | TGTTGATAATGATAATGAGA+GGG | + | chr5.4:16259348-16259367 | MS.gene72704:CDS | 25.0% |
AAACACATATGATCTTTCCA+TGG | - | chr5.4:16258316-16258335 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr5.4:16257478-16257497 | MS.gene72704:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr5.4:16258078-16258097 | MS.gene72704:CDS | 30.0% | |
AAGAAAGACCAAATCCAATT+AGG | + | chr5.4:16259926-16259945 | MS.gene72704:CDS | 30.0% | |
AATCAGATTTCGACTACAAT+TGG | + | chr5.4:16258846-16258865 | MS.gene72704:CDS | 30.0% | |
AGAACATCTTATGAAGTGAT+GGG | + | chr5.4:16257781-16257800 | MS.gene72704:CDS | 30.0% | |
ATCAGATTTCGACTACAATT+GGG | + | chr5.4:16258847-16258866 | MS.gene72704:CDS | 30.0% | |
ATGATTGTCAAAACCAAGAA+AGG | - | chr5.4:16258540-16258559 | None:intergenic | 30.0% | |
ATTATGATCTTCAAACCTTG+GGG | - | chr5.4:16259419-16259438 | None:intergenic | 30.0% | |
CAACAAGATTATGCTCTATT+TGG | + | chr5.4:16258021-16258040 | MS.gene72704:CDS | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr5.4:16257466-16257485 | MS.gene72704:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr5.4:16259251-16259270 | None:intergenic | 30.0% | |
CTGGTATATGTGTGTTAATT+TGG | + | chr5.4:16258182-16258201 | MS.gene72704:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr5.4:16259249-16259268 | MS.gene72704:CDS | 30.0% | |
GACAGAAATTTCTTATAGCT+CGG | + | chr5.4:16259992-16260011 | MS.gene72704:intron | 30.0% | |
GAGAATGCAAAGAAAAATCT+CGG | + | chr5.4:16258761-16258780 | MS.gene72704:CDS | 30.0% | |
GATTATGATCTTCAAACCTT+GGG | - | chr5.4:16259420-16259439 | None:intergenic | 30.0% | |
GCCGATATTTATTGTTTGTT+CGG | - | chr5.4:16258074-16258093 | None:intergenic | 30.0% | |
TAAAGAAAAACCAGAGGAAA+GGG | + | chr5.4:16257567-16257586 | MS.gene72704:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr5.4:16259057-16259076 | None:intergenic | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr5.4:16257477-16257496 | MS.gene72704:CDS | 30.0% | |
TGGATATCATAGTAAAAACC+TGG | - | chr5.4:16257949-16257968 | None:intergenic | 30.0% | |
TGGTGTATACTTGTTTACTA+CGG | - | chr5.4:16259191-16259210 | None:intergenic | 30.0% | |
TTCTTTGACCTAATTGGATT+TGG | - | chr5.4:16259937-16259956 | None:intergenic | 30.0% | |
TTTAAGTCCGAAAATCGAAA+AGG | - | chr5.4:16257835-16257854 | None:intergenic | 30.0% | |
TTTCTATTTACACAGCACAA+TGG | + | chr5.4:16258460-16258479 | MS.gene72704:intron | 30.0% | |
! | AAATGCTCTGGTTTATGTAA+TGG | - | chr5.4:16257679-16257698 | None:intergenic | 30.0% |
! | AGCTGGAATATATTTGAAGT+TGG | + | chr5.4:16257600-16257619 | MS.gene72704:CDS | 30.0% |
! | CAAAGTTTTCACAATTGAGA+AGG | + | chr5.4:16259306-16259325 | MS.gene72704:CDS | 30.0% |
! | GAATCTTCCTTTTCGATTTT+CGG | + | chr5.4:16257825-16257844 | MS.gene72704:CDS | 30.0% |
! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr5.4:16258654-16258673 | None:intergenic | 30.0% |
! | TCAATTCCGAATGTTTTTCA+AGG | + | chr5.4:16258704-16258723 | MS.gene72704:CDS | 30.0% |
! | TCAGTTTTCAATTCAATGAG+TGG | - | chr5.4:16260485-16260504 | None:intergenic | 30.0% |
! | TGAGGCTTTAACAAATTAAG+CGG | + | chr5.4:16260035-16260054 | MS.gene72704:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr5.4:16259919-16259938 | None:intergenic | 30.0% |
!! | ACATGTTTTCAAGATTTTGG+AGG | + | chr5.4:16259531-16259550 | MS.gene72704:CDS | 30.0% |
!! | ATCATAATCGACTTGATGAA+AGG | + | chr5.4:16259431-16259450 | MS.gene72704:CDS | 30.0% |
!! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr5.4:16258157-16258176 | MS.gene72704:intron | 30.0% |
!! | GAGGAGTTTCTTATTTCTAA+AGG | + | chr5.4:16259811-16259830 | MS.gene72704:CDS | 30.0% |
!! | TCATAATCGACTTGATGAAA+GGG | + | chr5.4:16259432-16259451 | MS.gene72704:CDS | 30.0% |
!! | TCGACATGTTTTCAAGATTT+TGG | + | chr5.4:16259528-16259547 | MS.gene72704:CDS | 30.0% |
!!! | AAGACATAGCCAGTATTTTT+TGG | + | chr5.4:16257983-16258002 | MS.gene72704:CDS | 30.0% |
!!! | AGACATAGCCAGTATTTTTT+GGG | + | chr5.4:16257984-16258003 | MS.gene72704:CDS | 30.0% |
!!! | CTGCACAATATGTTTTAAAG+CGG | + | chr5.4:16259596-16259615 | MS.gene72704:CDS | 30.0% |
!!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr5.4:16258716-16258735 | MS.gene72704:CDS | 30.0% |
ACATTATGGTTCAGAGAATG+AGG | + | chr5.4:16259086-16259105 | MS.gene72704:CDS | 35.0% | |
CATAAATTCCAAGGCAAGAT+AGG | - | chr5.4:16258283-16258302 | None:intergenic | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr5.4:16259087-16259106 | MS.gene72704:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr5.4:16257718-16257737 | MS.gene72704:CDS | 35.0% | |
CGATTATGATCTTCAAACCT+TGG | - | chr5.4:16259421-16259440 | None:intergenic | 35.0% | |
CTAAAGAAAAACCAGAGGAA+AGG | + | chr5.4:16257566-16257585 | MS.gene72704:CDS | 35.0% | |
CTCATTCAAATCGTATGCAT+TGG | + | chr5.4:16258933-16258952 | MS.gene72704:CDS | 35.0% | |
GAAAGCTAAAGAAAAACCAG+AGG | + | chr5.4:16257561-16257580 | MS.gene72704:CDS | 35.0% | |
GAAGCAAAAGAAAGATGATG+AGG | + | chr5.4:16260017-16260036 | MS.gene72704:intron | 35.0% | |
GAGAACATCTTATGAAGTGA+TGG | + | chr5.4:16257780-16257799 | MS.gene72704:CDS | 35.0% | |
GTCTGCTTAATCCTAAAAAC+AGG | + | chr5.4:16257503-16257522 | MS.gene72704:CDS | 35.0% | |
TCTAATGACAACTCGTCAAA+AGG | + | chr5.4:16257861-16257880 | MS.gene72704:CDS | 35.0% | |
TGTACAGAGCATAAATTCCA+AGG | - | chr5.4:16258292-16258311 | None:intergenic | 35.0% | |
TTCTCATACTCAACAAGAAC+TGG | - | chr5.4:16257544-16257563 | None:intergenic | 35.0% | |
! | CATCGTAAGAGTGTGTTATT+TGG | + | chr5.4:16258557-16258576 | MS.gene72704:CDS | 35.0% |
! | GAGGCTTTAACAAATTAAGC+GGG | + | chr5.4:16260036-16260055 | MS.gene72704:intron | 35.0% |
! | GCATCTGAAGTATTTCTCAA+CGG | + | chr5.4:16259763-16259782 | MS.gene72704:CDS | 35.0% |
! | GGTTTCGAATGTTGATGTTT+TGG | + | chr5.4:16259369-16259388 | MS.gene72704:CDS | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr5.4:16259016-16259035 | MS.gene72704:CDS | 35.0% |
! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr5.4:16258163-16258182 | MS.gene72704:intron | 35.0% |
! | TTTTAATGGAAGGCCTACTT+CGG | + | chr5.4:16258889-16258908 | MS.gene72704:CDS | 35.0% |
! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr5.4:16258729-16258748 | MS.gene72704:CDS | 35.0% |
!! | ACTGCTTTTGAAGACTTAGA+AGG | - | chr5.4:16259865-16259884 | None:intergenic | 35.0% |
!! | CGCTTTAAAACATATTGTGC+AGG | - | chr5.4:16259598-16259617 | None:intergenic | 35.0% |
!! | TATGCATTGGTCTTCAGTTT+GGG | + | chr5.4:16258946-16258965 | MS.gene72704:CDS | 35.0% |
!! | TTCAAGATTTTGGAGGTCTT+AGG | + | chr5.4:16259538-16259557 | MS.gene72704:CDS | 35.0% |
!!! | AGACATCAGCTACTTTTGAT+TGG | + | chr5.4:16258600-16258619 | MS.gene72704:CDS | 35.0% |
!!! | CACAATATGTTTTAAAGCGG+TGG | + | chr5.4:16259599-16259618 | MS.gene72704:CDS | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr5.4:16259052-16259071 | None:intergenic | 40.0% | |
ACCTATGATCTTTGCATAGC+TGG | - | chr5.4:16258410-16258429 | None:intergenic | 40.0% | |
AGTCGCTTCTTTGACCTAAT+TGG | - | chr5.4:16259943-16259962 | None:intergenic | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr5.4:16259263-16259282 | MS.gene72704:CDS | 40.0% | |
ATGTCGTATGTTTGAGAACC+GGG | + | chr5.4:16259495-16259514 | MS.gene72704:CDS | 40.0% | |
ATTTATGCTCTGTACAGCCA+TGG | + | chr5.4:16258296-16258315 | MS.gene72704:intron | 40.0% | |
ATTTCTCAACGGTGTTCTTG+AGG | + | chr5.4:16259774-16259793 | MS.gene72704:CDS | 40.0% | |
CATGTCGTATGTTTGAGAAC+CGG | + | chr5.4:16259494-16259513 | MS.gene72704:CDS | 40.0% | |
CTGAAATCCACCATGAATGT+TGG | + | chr5.4:16259652-16259671 | MS.gene72704:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr5.4:16259640-16259659 | None:intergenic | 40.0% | |
GTCAATTCTGATGTAATGCG+CGG | + | chr5.4:16260428-16260447 | MS.gene72704:intron | 40.0% | |
GTCTTTAGTGCCAACATTCA+TGG | - | chr5.4:16259665-16259684 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr5.4:16259262-16259281 | MS.gene72704:CDS | 40.0% | |
TCAAACCATATACACAGACC+AGG | + | chr5.4:16258664-16258683 | MS.gene72704:CDS | 40.0% | |
TCCAGCTATGCAAAGATCAT+AGG | + | chr5.4:16258406-16258425 | MS.gene72704:intron | 40.0% | |
TCCATCTGCCCAAAAAATAC+TGG | - | chr5.4:16257995-16258014 | None:intergenic | 40.0% | |
TGGTCTGTGTATATGGTTTG+AGG | - | chr5.4:16258665-16258684 | None:intergenic | 40.0% | |
TTCATTTCAGCTGCCTTTCT+TGG | + | chr5.4:16258524-16258543 | MS.gene72704:intron | 40.0% | |
TTGAAGAAAACCTTTCCCCA+AGG | + | chr5.4:16259401-16259420 | MS.gene72704:CDS | 40.0% | |
TTTAGTGCCAACATTCATGG+TGG | - | chr5.4:16259662-16259681 | None:intergenic | 40.0% | |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr5.4:16259114-16259133 | MS.gene72704:CDS | 40.0% |
! | TGAAGACTTAGAAGGCGTAA+CGG | - | chr5.4:16259857-16259876 | None:intergenic | 40.0% |
!! | AAGATTTTGGAGGTCTTAGG+TGG | + | chr5.4:16259541-16259560 | MS.gene72704:CDS | 40.0% |
!! | GTATGCATTGGTCTTCAGTT+TGG | + | chr5.4:16258945-16258964 | MS.gene72704:CDS | 40.0% |
!! | TCACATGTTGGCCTGTTTTT+AGG | - | chr5.4:16257517-16257536 | None:intergenic | 40.0% |
!! | TCTTATGAAGTGATGGGTCA+AGG | + | chr5.4:16257787-16257806 | MS.gene72704:CDS | 40.0% |
AACTCGTCAAAAGGAGATGG+TGG | + | chr5.4:16257870-16257889 | MS.gene72704:CDS | 45.0% | |
AATGAAGCTCTCTCGAAACC+AGG | + | chr5.4:16257928-16257947 | MS.gene72704:CDS | 45.0% | |
AGAACTGGACTGTCACATGT+TGG | - | chr5.4:16257529-16257548 | None:intergenic | 45.0% | |
AGCCACTTAAAGTCCGAAGT+AGG | - | chr5.4:16258905-16258924 | None:intergenic | 45.0% | |
ATCCCAACAGTCAGCTTATG+CGG | + | chr5.4:16259164-16259183 | MS.gene72704:CDS | 45.0% | |
CATGTCGACATAAGAAACCC+CGG | - | chr5.4:16259516-16259535 | None:intergenic | 45.0% | |
CTCAAGTAGCACAAATGCTC+TGG | - | chr5.4:16257691-16257710 | None:intergenic | 45.0% | |
CTGTCTGTGAACCATCTGTT+GGG | + | chr5.4:16259887-16259906 | MS.gene72704:CDS | 45.0% | |
GAAAAACCAGAGGAAAGGGT+TGG | + | chr5.4:16257571-16257590 | MS.gene72704:CDS | 45.0% | |
GACAACTCGTCAAAAGGAGA+TGG | + | chr5.4:16257867-16257886 | MS.gene72704:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | + | chr5.4:16259105-16259124 | MS.gene72704:CDS | 45.0% | |
GATCTTCAAACCTTGGGGAA+AGG | - | chr5.4:16259414-16259433 | None:intergenic | 45.0% | |
TGTCGTATGTTTGAGAACCG+GGG | + | chr5.4:16259496-16259515 | MS.gene72704:CDS | 45.0% | |
TGTCTTCTGCAGCATCAACT+TGG | - | chr5.4:16257969-16257988 | None:intergenic | 45.0% | |
TGTTCTTGAGGCAGGGAAAA+AGG | + | chr5.4:16259786-16259805 | MS.gene72704:CDS | 45.0% | |
TTACAACCAACCCTTTCCTC+TGG | - | chr5.4:16257580-16257599 | None:intergenic | 45.0% | |
TTGATATCGTTGCGCTTCAG+TGG | - | chr5.4:16259689-16259708 | None:intergenic | 45.0% | |
! | GTGAGGTCACATTTTACAGC+TGG | + | chr5.4:16258968-16258987 | MS.gene72704:CDS | 45.0% |
!! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr5.4:16258951-16258970 | MS.gene72704:CDS | 45.0% |
!! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr5.4:16257583-16257602 | MS.gene72704:CDS | 45.0% |
!!! | GCCAGTATTTTTTGGGCAGA+TGG | + | chr5.4:16257991-16258010 | MS.gene72704:CDS | 45.0% |
ACCAGCCTGGTCTGTGTATA+TGG | - | chr5.4:16258672-16258691 | None:intergenic | 50.0% | |
ACCATATACACAGACCAGGC+TGG | + | chr5.4:16258668-16258687 | MS.gene72704:CDS | 50.0% | |
AGGGTTGTCACAGTCGACAT+TGG | + | chr5.4:16259451-16259470 | MS.gene72704:CDS | 50.0% | |
GACCGCATAAGCTGACTGTT+GGG | - | chr5.4:16259169-16259188 | None:intergenic | 50.0% | |
GCTGTCTGTGAACCATCTGT+TGG | + | chr5.4:16259886-16259905 | MS.gene72704:CDS | 50.0% | |
GGCCTACTTCGGACTTTAAG+TGG | + | chr5.4:16258900-16258919 | MS.gene72704:CDS | 50.0% | |
GGGTTGTCACAGTCGACATT+GGG | + | chr5.4:16259452-16259471 | MS.gene72704:CDS | 50.0% | |
GGTCTTTGCTCATGGCACAT+GGG | + | chr5.4:16258737-16258756 | MS.gene72704:CDS | 50.0% | |
TACACGTGTTTGCGCAGATG+CGG | + | chr5.4:16259738-16259757 | MS.gene72704:CDS | 50.0% | |
TCAACGGTGTTCTTGAGGCA+GGG | + | chr5.4:16259779-16259798 | MS.gene72704:CDS | 50.0% | |
TGGGTGATCCTATCTTGCCT+TGG | + | chr5.4:16258272-16258291 | MS.gene72704:intron | 50.0% | |
TGGTCTTTGCTCATGGCACA+TGG | + | chr5.4:16258736-16258755 | MS.gene72704:CDS | 50.0% | |
! | TTTGGTGCAGTCCCAACAGA+TGG | - | chr5.4:16259901-16259920 | None:intergenic | 50.0% |
!! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr5.4:16257793-16257812 | MS.gene72704:CDS | 50.0% |
ACTTCAACAACGCACCAGCC+TGG | - | chr5.4:16258685-16258704 | None:intergenic | 55.0% | |
CTCAACGGTGTTCTTGAGGC+AGG | + | chr5.4:16259778-16259797 | MS.gene72704:CDS | 55.0% | |
GGACCGCATAAGCTGACTGT+TGG | - | chr5.4:16259170-16259189 | None:intergenic | 55.0% | |
TGAGGCAGGGAAAAAGGCAG+AGG | + | chr5.4:16259792-16259811 | MS.gene72704:CDS | 55.0% | |
! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr5.4:16257874-16257893 | MS.gene72704:CDS | 55.0% |
!! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr5.4:16257796-16257815 | MS.gene72704:CDS | 55.0% |
ACGTGTTTGCGCAGATGCGG+AGG | + | chr5.4:16259741-16259760 | MS.gene72704:CDS | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr5.4:16257801-16257820 | MS.gene72704:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 16257409 | 16260571 | 16257409 | ID=MS.gene72704 |
chr5.4 | mRNA | 16257409 | 16260571 | 16257409 | ID=MS.gene72704.t1;Parent=MS.gene72704 |
chr5.4 | exon | 16257409 | 16258099 | 16257409 | ID=MS.gene72704.t1.exon1;Parent=MS.gene72704.t1 |
chr5.4 | CDS | 16257409 | 16258099 | 16257409 | ID=cds.MS.gene72704.t1;Parent=MS.gene72704.t1 |
chr5.4 | exon | 16258534 | 16259967 | 16258534 | ID=MS.gene72704.t1.exon2;Parent=MS.gene72704.t1 |
chr5.4 | CDS | 16258534 | 16259967 | 16258534 | ID=cds.MS.gene72704.t1;Parent=MS.gene72704.t1 |
chr5.4 | exon | 16260552 | 16260571 | 16260552 | ID=MS.gene72704.t1.exon3;Parent=MS.gene72704.t1 |
chr5.4 | CDS | 16260552 | 16260571 | 16260552 | ID=cds.MS.gene72704.t1;Parent=MS.gene72704.t1 |
Gene Sequence |
Protein sequence |