Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72808.t1 | XP_003612572.1 | 91.4 | 302 | 23 | 1 | 1 | 299 | 1 | 302 | 1.60E-106 | 396 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72808.t1 | O80450 | 54.5 | 275 | 112 | 4 | 26 | 299 | 26 | 288 | 7.6e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72808.t1 | G7K6R0 | 91.4 | 302 | 23 | 1 | 1 | 299 | 1 | 302 | 1.1e-106 | 396.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene72808.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72808.t1 | MTR_5g026540 | 96.358 | 302 | 8 | 1 | 1 | 299 | 1 | 302 | 0.0 | 593 |
| MS.gene72808.t1 | MTR_4g015680 | 50.397 | 252 | 109 | 5 | 44 | 294 | 40 | 276 | 2.79e-57 | 186 |
| MS.gene72808.t1 | MTR_7g068770 | 46.863 | 271 | 129 | 5 | 28 | 297 | 35 | 291 | 5.44e-51 | 170 |
| MS.gene72808.t1 | MTR_3g085960 | 50.820 | 61 | 30 | 0 | 46 | 106 | 77 | 137 | 7.30e-14 | 71.6 |
| MS.gene72808.t1 | MTR_2g026725 | 30.508 | 118 | 71 | 3 | 30 | 138 | 241 | 356 | 1.24e-12 | 68.2 |
| MS.gene72808.t1 | MTR_1g098870 | 29.323 | 133 | 82 | 3 | 10 | 132 | 332 | 462 | 1.53e-12 | 68.2 |
| MS.gene72808.t1 | MTR_1g098900 | 33.696 | 92 | 56 | 3 | 46 | 133 | 455 | 545 | 4.60e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72808.t1 | AT2G38250 | 43.321 | 277 | 140 | 5 | 26 | 299 | 26 | 288 | 5.82e-50 | 167 |
| MS.gene72808.t1 | AT5G01380 | 39.446 | 289 | 154 | 7 | 26 | 299 | 33 | 315 | 6.80e-41 | 144 |
| MS.gene72808.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 2.55e-15 | 73.9 |
| MS.gene72808.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 4.23e-15 | 74.3 |
| MS.gene72808.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 4.23e-15 | 74.3 |
| MS.gene72808.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 1.24e-14 | 73.9 |
| MS.gene72808.t1 | AT3G25990 | 39.785 | 93 | 48 | 2 | 46 | 132 | 55 | 145 | 2.13e-14 | 73.2 |
| MS.gene72808.t1 | AT1G76890 | 34.711 | 121 | 74 | 3 | 19 | 135 | 371 | 490 | 4.54e-14 | 72.8 |
| MS.gene72808.t1 | AT1G76880 | 36.264 | 91 | 53 | 3 | 46 | 132 | 409 | 498 | 4.84e-11 | 63.5 |
Find 75 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATGAGTTTGTTTAAA+AGG | 0.131414 | 5.1:+17190980 | None:intergenic |
| GGGCATTGCTTTCCATGTTC+TGG | 0.245787 | 5.1:+17191510 | None:intergenic |
| CGATGCTCTGGCAGCTCGCC+TGG | 0.275887 | 5.1:-17193125 | MS.gene72808:CDS |
| CACTTGCATTTACACTGTTC+AGG | 0.319358 | 5.1:+17192878 | None:intergenic |
| CCAAAGCGTCTTGTTCCTCT+TGG | 0.348352 | 5.1:+17192946 | None:intergenic |
| AGATGAGGGAGAGAGGGTAT+AGG | 0.349714 | 5.1:-17192907 | MS.gene72808:CDS |
| CGAGAAGCAATACACGTAAA+AGG | 0.365476 | 5.1:-17191296 | MS.gene72808:CDS |
| GGAGAGATTAATGATTGAAC+AGG | 0.371512 | 5.1:-17191079 | MS.gene72808:CDS |
| CAAGAGGAACAAGACGCTTT+GGG | 0.378761 | 5.1:-17192945 | MS.gene72808:CDS |
| GAGACTGAGGGAGGAGAATA+GGG | 0.379742 | 5.1:-17191031 | MS.gene72808:CDS |
| GGAGACTGAGGGAGGAGAAT+AGG | 0.381910 | 5.1:-17191032 | MS.gene72808:CDS |
| CCAAGAGGAACAAGACGCTT+TGG | 0.398905 | 5.1:-17192946 | MS.gene72808:CDS |
| GAATCTTGTTAATCGCTATA+AGG | 0.403188 | 5.1:-17192852 | MS.gene72808:intron |
| TTGCATGCTATGTGCTCTTT+CGG | 0.404296 | 5.1:+17191458 | None:intergenic |
| ATGAATGAGTTTGTTTAAAA+GGG | 0.419814 | 5.1:+17190981 | None:intergenic |
| CCGAAAATGTACGGCGGCGG+TGG | 0.422205 | 5.1:-17193154 | None:intergenic |
| CAAGAGAGTTCATAGCGATA+AGG | 0.454890 | 5.1:-17192997 | MS.gene72808:CDS |
| GAACAAGACGCTTTGGGAAG+TGG | 0.456312 | 5.1:-17192939 | MS.gene72808:CDS |
| AAGAGAGTTCATAGCGATAA+GGG | 0.460403 | 5.1:-17192996 | MS.gene72808:CDS |
| AGTTCGAAGATGAGGGAGAG+AGG | 0.463651 | 5.1:-17192914 | MS.gene72808:CDS |
| ACAGGAATGGCGGCAGTCAA+TGG | 0.476521 | 5.1:-17191115 | MS.gene72808:CDS |
| TGACTCCACTGCGGCTGAGC+TGG | 0.479689 | 5.1:+17193028 | None:intergenic |
| AAAATGTACGGCGGCGGTGG+AGG | 0.483528 | 5.1:-17193151 | MS.gene72808:CDS |
| AGGAGAATAGGGCAGAGAGA+AGG | 0.485185 | 5.1:-17191020 | MS.gene72808:CDS |
| GGAGAATAGGGCAGAGAGAA+GGG | 0.485668 | 5.1:-17191019 | MS.gene72808:CDS |
| AGTGGTGAGTTCGAAGATGA+GGG | 0.492563 | 5.1:-17192921 | MS.gene72808:CDS |
| GATGCAGTGGAGGGAGGTGA+TGG | 0.493197 | 5.1:-17191169 | MS.gene72808:CDS |
| TGAGGGAGAGAGGGTATAGG+AGG | 0.495279 | 5.1:-17192904 | MS.gene72808:CDS |
| TCAGCCGCAGTGGAGTCAGC+AGG | 0.495729 | 5.1:-17193023 | MS.gene72808:CDS |
| GATGCTCTGGCAGCTCGCCT+GGG | 0.496371 | 5.1:-17193124 | MS.gene72808:CDS |
| AAGTGGTGAGTTCGAAGATG+AGG | 0.496550 | 5.1:-17192922 | MS.gene72808:CDS |
| TTGCAACAGAGAAGTCTTCA+AGG | 0.502672 | 5.1:-17191260 | MS.gene72808:CDS |
| GGAGACATCAACGACGATGT+TGG | 0.506153 | 5.1:+17193076 | None:intergenic |
| CGGTGGAGGAGACGATGCTC+TGG | 0.506430 | 5.1:-17193137 | MS.gene72808:CDS |
| GTCGTTGATGTCTCCGACGG+CGG | 0.510283 | 5.1:-17193068 | MS.gene72808:CDS |
| AACAGTTGTTTGAACAGGAA+TGG | 0.513571 | 5.1:-17191128 | MS.gene72808:CDS |
| GATTAATGATTGAACAGGAA+TGG | 0.519107 | 5.1:-17191074 | MS.gene72808:CDS |
| CGATAAGGGCGGAGCTTGAG+AGG | 0.528329 | 5.1:-17192982 | MS.gene72808:CDS |
| GGAGTGAAGAAAATAAGAAG+TGG | 0.531731 | 5.1:-17191390 | MS.gene72808:CDS |
| GTCTCCGACGGCGGTGAGAG+AGG | 0.538271 | 5.1:-17193059 | MS.gene72808:CDS |
| GGAGGGAAAGAGAAGAGCAT+AGG | 0.544277 | 5.1:-17191053 | MS.gene72808:CDS |
| TAATGATTGAACAGGAATGG+AGG | 0.545461 | 5.1:-17191071 | MS.gene72808:CDS |
| TTACGTGTATTGCTTCTCGC+AGG | 0.548915 | 5.1:+17191300 | None:intergenic |
| AATACACGTAAAAGGAAAGC+TGG | 0.551659 | 5.1:-17191288 | MS.gene72808:CDS |
| GTGACTGTGGTACTATTCCC+AGG | 0.552521 | 5.1:+17193107 | None:intergenic |
| GAGGGAGGTGATGGAAAAGC+GGG | 0.555074 | 5.1:-17191160 | MS.gene72808:CDS |
| GTTCGAAGATGAGGGAGAGA+GGG | 0.555989 | 5.1:-17192913 | MS.gene72808:CDS |
| AATGGAGATGCAGTGGAGGG+AGG | 0.556920 | 5.1:-17191175 | MS.gene72808:CDS |
| GGATACCAGCTCAGCCGCAG+TGG | 0.570476 | 5.1:-17193033 | MS.gene72808:CDS |
| AATGATTGAACAGGAATGGA+GGG | 0.570661 | 5.1:-17191070 | MS.gene72808:CDS |
| CTGAACAGTGTAAATGCAAG+TGG | 0.574316 | 5.1:-17192877 | MS.gene72808:CDS |
| AGTTGAAGATGACAGTGAAG+AGG | 0.575058 | 5.1:-17191328 | MS.gene72808:CDS |
| CTGAGAATTCGTCAGAGGAT+CGG | 0.577596 | 5.1:+17191364 | None:intergenic |
| CGAATTCTCAGAAGATGATG+AGG | 0.577887 | 5.1:-17191352 | MS.gene72808:CDS |
| CTCTCCTCTCTCACCGCCGT+CGG | 0.578959 | 5.1:+17193055 | None:intergenic |
| GGAGGGAGGTGATGGAAAAG+CGG | 0.585792 | 5.1:-17191161 | MS.gene72808:CDS |
| GAGACATCTGATCCAGAACA+TGG | 0.596082 | 5.1:-17191522 | MS.gene72808:CDS |
| GAGAAGAGCATAGGAGACTG+AGG | 0.597643 | 5.1:-17191044 | MS.gene72808:CDS |
| TGACAGAAACCGAAAATGTA+CGG | 0.599687 | 5.1:-17193163 | None:intergenic |
| AGTCAATGGAAAAGCTTGAG+AGG | 0.603425 | 5.1:-17191101 | MS.gene72808:CDS |
| GATAAGGGCGGAGCTTGAGA+GGG | 0.608839 | 5.1:-17192981 | MS.gene72808:CDS |
| GTCAATGGAAAAGCTTGAGA+GGG | 0.615909 | 5.1:-17191100 | MS.gene72808:CDS |
| TGCAACAGAGAAGTCTTCAA+GGG | 0.632169 | 5.1:-17191259 | MS.gene72808:CDS |
| TAATATTCAAGAAATGCTCA+AGG | 0.634081 | 5.1:-17191220 | MS.gene72808:CDS |
| ATCGTCGTTGATGTCTCCGA+CGG | 0.642280 | 5.1:-17193071 | MS.gene72808:CDS |
| AGAAGAGCATAGGAGACTGA+GGG | 0.643488 | 5.1:-17191043 | MS.gene72808:CDS |
| ATCTTCTGAGAATTCGTCAG+AGG | 0.649927 | 5.1:+17191359 | None:intergenic |
| AGAGCATAGGAGACTGAGGG+AGG | 0.658874 | 5.1:-17191040 | MS.gene72808:CDS |
| AGTTGTTTGAACAGGAATGG+CGG | 0.675425 | 5.1:-17191125 | MS.gene72808:CDS |
| AAACCGAAAATGTACGGCGG+CGG | 0.675954 | 5.1:-17193157 | None:intergenic |
| CGACGGCGGTGAGAGAGGAG+AGG | 0.677729 | 5.1:-17193054 | MS.gene72808:CDS |
| AGAGTTCATAGCGATAAGGG+CGG | 0.691633 | 5.1:-17192993 | MS.gene72808:CDS |
| GTTGGAATCAGAAGTGACTG+TGG | 0.763707 | 5.1:+17193094 | None:intergenic |
| GTCTCCTGCTGACTCCACTG+CGG | 0.773488 | 5.1:+17193019 | None:intergenic |
| CAGAAACCGAAAATGTACGG+CGG | 0.798682 | 5.1:-17193160 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTTTTTTTTTTTGTT+TGG | + | chr5.1:17191787-17191806 | None:intergenic | 10.0% |
| !! | CAAAAAATGATATAATTGTA+AGG | + | chr5.1:17191633-17191652 | None:intergenic | 15.0% |
| !! | AAAAGCTATATCTTGAATAT+TGG | - | chr5.1:17192518-17192537 | MS.gene72808:intron | 20.0% |
| !! | AAAGCTATATCTTGAATATT+GGG | - | chr5.1:17192519-17192538 | MS.gene72808:intron | 20.0% |
| !! | AATTCAAAAACTAATGCTTT+CGG | + | chr5.1:17191817-17191836 | None:intergenic | 20.0% |
| !! | AATTCAAAAATTTAGTCTCT+TGG | - | chr5.1:17191696-17191715 | MS.gene72808:intron | 20.0% |
| !! | ATGGTAATAAAAACAAATGT+TGG | + | chr5.1:17191845-17191864 | None:intergenic | 20.0% |
| !! | TGCATTGTTATAATTTCATT+TGG | - | chr5.1:17191535-17191554 | MS.gene72808:intron | 20.0% |
| !!! | AAACAATTTTTGAATTTGCA+GGG | - | chr5.1:17191754-17191773 | MS.gene72808:intron | 20.0% |
| !!! | ACTAAATTTTTGAATTTGCA+GGG | + | chr5.1:17191692-17191711 | None:intergenic | 20.0% |
| !!! | ATGAATGAGTTTGTTTAAAA+GGG | + | chr5.1:17193139-17193158 | None:intergenic | 20.0% |
| !!! | CATTTGTTTTTATTACCATT+TGG | - | chr5.1:17191846-17191865 | MS.gene72808:intron | 20.0% |
| !!! | TATCTTTCTCTTTATGTTTT+GGG | - | chr5.1:17191288-17191307 | MS.gene72808:CDS | 20.0% |
| ! | AAGCTATATCTTGAATATTG+GGG | - | chr5.1:17192520-17192539 | MS.gene72808:intron | 25.0% |
| ! | AGTAAATTTAATCATGTCGT+TGG | - | chr5.1:17192437-17192456 | MS.gene72808:intron | 25.0% |
| ! | ATATATGAAATGCTGTGATT+TGG | - | chr5.1:17191914-17191933 | MS.gene72808:intron | 25.0% |
| ! | CATGCAATTCTTCAAAAAAT+GGG | + | chr5.1:17192630-17192649 | None:intergenic | 25.0% |
| ! | GTAAATTTAATCATGTCGTT+GGG | - | chr5.1:17192438-17192457 | MS.gene72808:intron | 25.0% |
| ! | GTAGTGTTTAATAATGTAGT+TGG | - | chr5.1:17191368-17191387 | MS.gene72808:CDS | 25.0% |
| ! | TAATATTCAAGAAATGCTCA+AGG | - | chr5.1:17192897-17192916 | MS.gene72808:CDS | 25.0% |
| ! | TGAGGACTAAAAAGTTATAT+TGG | + | chr5.1:17192205-17192224 | None:intergenic | 25.0% |
| ! | TTTCCAACACCAATTAAAAA+TGG | - | chr5.1:17192924-17192943 | MS.gene72808:CDS | 25.0% |
| !! | CATGAATGAGTTTGTTTAAA+AGG | + | chr5.1:17193140-17193159 | None:intergenic | 25.0% |
| !! | GAAACAATTTTTGAATTTGC+AGG | - | chr5.1:17191753-17191772 | MS.gene72808:intron | 25.0% |
| !! | GACTAAATTTTTGAATTTGC+AGG | + | chr5.1:17191693-17191712 | None:intergenic | 25.0% |
| !! | GTATCTTTCTCTTTATGTTT+TGG | - | chr5.1:17191287-17191306 | MS.gene72808:CDS | 25.0% |
| !!! | AACATGTATGATTTGGTATT+TGG | - | chr5.1:17192406-17192425 | MS.gene72808:intron | 25.0% |
| !!! | ATATAACTTTTTAGTCCTCA+AGG | - | chr5.1:17192205-17192224 | MS.gene72808:intron | 25.0% |
| !!! | TCTTTATGTTTTGGGTTTTT+AGG | - | chr5.1:17191296-17191315 | MS.gene72808:CDS | 25.0% |
| AACATTGAAGGAGTTTGAAA+AGG | - | chr5.1:17192251-17192270 | MS.gene72808:intron | 30.0% | |
| AACCTCTAACATGTATGATT+TGG | - | chr5.1:17192399-17192418 | MS.gene72808:intron | 30.0% | |
| AATTAAAAATGGAGATGCAG+TGG | - | chr5.1:17192935-17192954 | MS.gene72808:CDS | 30.0% | |
| ATAAGTATGGACCATAATGT+TGG | - | chr5.1:17191880-17191899 | MS.gene72808:intron | 30.0% | |
| CGTTCAACTCAAACAAAAAA+AGG | - | chr5.1:17192706-17192725 | MS.gene72808:intron | 30.0% | |
| GAATCTTGTTAATCGCTATA+AGG | - | chr5.1:17191265-17191284 | MS.gene72808:CDS | 30.0% | |
| GATTAATGATTGAACAGGAA+TGG | - | chr5.1:17193043-17193062 | MS.gene72808:CDS | 30.0% | |
| GCATGCAATTCTTCAAAAAA+TGG | + | chr5.1:17192631-17192650 | None:intergenic | 30.0% | |
| TAAGTATGGACCATAATGTT+GGG | - | chr5.1:17191881-17191900 | MS.gene72808:intron | 30.0% | |
| TACCAAATCATACATGTTAG+AGG | + | chr5.1:17192404-17192423 | None:intergenic | 30.0% | |
| TGAAAAACAGTTGTTTGAAC+AGG | - | chr5.1:17192984-17193003 | MS.gene72808:CDS | 30.0% | |
| TTATTTATCCACAGTCCAAA+TGG | + | chr5.1:17191864-17191883 | None:intergenic | 30.0% | |
| ! | TTTTATTACCATTTGGACTG+TGG | - | chr5.1:17191853-17191872 | MS.gene72808:intron | 30.0% |
| !! | ACTGCATCTCCATTTTTAAT+TGG | + | chr5.1:17192936-17192955 | None:intergenic | 30.0% |
| !! | TCTCCATTTTTAATTGGTGT+TGG | + | chr5.1:17192930-17192949 | None:intergenic | 30.0% |
| AAAGAAAACTGATGCACAGT+TGG | + | chr5.1:17192481-17192500 | None:intergenic | 35.0% | |
| AAATGAGTTGCAGAAAGACA+TGG | - | chr5.1:17191393-17191412 | MS.gene72808:CDS | 35.0% | |
| AACAGTTGTTTGAACAGGAA+TGG | - | chr5.1:17192989-17193008 | MS.gene72808:CDS | 35.0% | |
| AAGAGAGTTCATAGCGATAA+GGG | - | chr5.1:17191121-17191140 | MS.gene72808:CDS | 35.0% | |
| AATACACGTAAAAGGAAAGC+TGG | - | chr5.1:17192829-17192848 | MS.gene72808:intron | 35.0% | |
| AATGATTGAACAGGAATGGA+GGG | - | chr5.1:17193047-17193066 | MS.gene72808:CDS | 35.0% | |
| ATAATGAGGTCCAGTTCAAA+TGG | + | chr5.1:17191971-17191990 | None:intergenic | 35.0% | |
| ATGAACTCAACCCAACATTA+TGG | + | chr5.1:17191894-17191913 | None:intergenic | 35.0% | |
| ATTGAAGGAGTTTGAAAAGG+AGG | - | chr5.1:17192254-17192273 | MS.gene72808:intron | 35.0% | |
| CTCTAAGTCCTTAACGTATT+GGG | + | chr5.1:17191734-17191753 | None:intergenic | 35.0% | |
| GGACTGTGGATAAATAAGTA+TGG | - | chr5.1:17191867-17191886 | MS.gene72808:intron | 35.0% | |
| GGAGAGATTAATGATTGAAC+AGG | - | chr5.1:17193038-17193057 | MS.gene72808:CDS | 35.0% | |
| GGAGTGAAGAAAATAAGAAG+TGG | - | chr5.1:17192727-17192746 | MS.gene72808:intron | 35.0% | |
| TAATGATTGAACAGGAATGG+AGG | - | chr5.1:17193046-17193065 | MS.gene72808:CDS | 35.0% | |
| TCAAATGCTAACTTGAGCTT+CGG | - | chr5.1:17192146-17192165 | MS.gene72808:intron | 35.0% | |
| TCTCTAAGTCCTTAACGTAT+TGG | + | chr5.1:17191735-17191754 | None:intergenic | 35.0% | |
| ! | AGGTTTTCTGCATATGCAAA+GGG | + | chr5.1:17192384-17192403 | None:intergenic | 35.0% |
| ! | CACATGATGATGTTTATGCA+GGG | - | chr5.1:17192568-17192587 | MS.gene72808:intron | 35.0% |
| ! | TCACATGATGATGTTTATGC+AGG | - | chr5.1:17192567-17192586 | MS.gene72808:intron | 35.0% |
| !! | ATGAAATGCTGTGATTTGGT+TGG | - | chr5.1:17191918-17191937 | MS.gene72808:intron | 35.0% |
| AAAAATGGAGATGCAGTGGA+GGG | - | chr5.1:17192939-17192958 | MS.gene72808:CDS | 40.0% | |
| ACCAATTGAACTACACCTTG+AGG | + | chr5.1:17192223-17192242 | None:intergenic | 40.0% | |
| AGGTTTCTTGATGGGAAAGT+TGG | + | chr5.1:17192061-17192080 | None:intergenic | 40.0% | |
| AGTCAATGGAAAAGCTTGAG+AGG | - | chr5.1:17193016-17193035 | MS.gene72808:CDS | 40.0% | |
| AGTTGAAGATGACAGTGAAG+AGG | - | chr5.1:17192789-17192808 | MS.gene72808:intron | 40.0% | |
| AGTTGTTTGAACAGGAATGG+CGG | - | chr5.1:17192992-17193011 | MS.gene72808:CDS | 40.0% | |
| ATACATGGCCCAATACGTTA+AGG | - | chr5.1:17191723-17191742 | MS.gene72808:intron | 40.0% | |
| CAAGAGAGTTCATAGCGATA+AGG | - | chr5.1:17191120-17191139 | MS.gene72808:CDS | 40.0% | |
| CACTTGCATTTACACTGTTC+AGG | + | chr5.1:17191242-17191261 | None:intergenic | 40.0% | |
| CGAATTCTCAGAAGATGATG+AGG | - | chr5.1:17192765-17192784 | MS.gene72808:intron | 40.0% | |
| CGAGAAGCAATACACGTAAA+AGG | - | chr5.1:17192821-17192840 | MS.gene72808:intron | 40.0% | |
| CTGAACAGTGTAAATGCAAG+TGG | - | chr5.1:17191240-17191259 | MS.gene72808:CDS | 40.0% | |
| CTTCTGAATCGCTCTAGTTA+GGG | + | chr5.1:17192005-17192024 | None:intergenic | 40.0% | |
| GCTTGACAAGGTTTCTTGAT+GGG | + | chr5.1:17192069-17192088 | None:intergenic | 40.0% | |
| GTCAATGGAAAAGCTTGAGA+GGG | - | chr5.1:17193017-17193036 | MS.gene72808:CDS | 40.0% | |
| TAAAAATGGAGATGCAGTGG+AGG | - | chr5.1:17192938-17192957 | MS.gene72808:CDS | 40.0% | |
| TCCTCAAGGTGTAGTTCAAT+TGG | - | chr5.1:17192219-17192238 | MS.gene72808:intron | 40.0% | |
| TGCAACAGAGAAGTCTTCAA+GGG | - | chr5.1:17192858-17192877 | MS.gene72808:CDS | 40.0% | |
| TGGTTGAGCTGAAACATTGA+AGG | - | chr5.1:17192239-17192258 | MS.gene72808:intron | 40.0% | |
| TTCTGAATCGCTCTAGTTAG+GGG | + | chr5.1:17192004-17192023 | None:intergenic | 40.0% | |
| TTGCAACAGAGAAGTCTTCA+AGG | - | chr5.1:17192857-17192876 | MS.gene72808:CDS | 40.0% | |
| TTGCATGCTATGTGCTCTTT+CGG | + | chr5.1:17192662-17192681 | None:intergenic | 40.0% | |
| ! | ATCTTCTGAGAATTCGTCAG+AGG | + | chr5.1:17192761-17192780 | None:intergenic | 40.0% |
| ! | GAGGTTTTCTGCATATGCAA+AGG | + | chr5.1:17192385-17192404 | None:intergenic | 40.0% |
| ! | GGTTTTCTGCATATGCAAAG+GGG | + | chr5.1:17192383-17192402 | None:intergenic | 40.0% |
| ! | TCTTGATGGGAAAGTTGGTT+GGG | + | chr5.1:17192056-17192075 | None:intergenic | 40.0% |
| ! | TTCTTGATGGGAAAGTTGGT+TGG | + | chr5.1:17192057-17192076 | None:intergenic | 40.0% |
| !! | AAATGCTGTGATTTGGTTGG+AGG | - | chr5.1:17191921-17191940 | MS.gene72808:intron | 40.0% |
| !! | AATGCTGTGATTTGGTTGGA+GGG | - | chr5.1:17191922-17191941 | MS.gene72808:intron | 40.0% |
| !! | TAGTCTCTTGGTGTCATACA+TGG | - | chr5.1:17191708-17191727 | MS.gene72808:intron | 40.0% |
| AAGAGTGATCTCGCTTGACA+AGG | + | chr5.1:17192081-17192100 | None:intergenic | 45.0% | |
| AAGTGGTGAGTTCGAAGATG+AGG | - | chr5.1:17191195-17191214 | MS.gene72808:CDS | 45.0% | |
| AGAGTTCATAGCGATAAGGG+CGG | - | chr5.1:17191124-17191143 | MS.gene72808:CDS | 45.0% | |
| AGTGGTGAGTTCGAAGATGA+GGG | - | chr5.1:17191196-17191215 | MS.gene72808:CDS | 45.0% | |
| CAAGAGGAACAAGACGCTTT+GGG | - | chr5.1:17191172-17191191 | MS.gene72808:CDS | 45.0% | |
| CACATAATGGTGCAGTGATG+TGG | + | chr5.1:17192032-17192051 | None:intergenic | 45.0% | |
| CGCTTGACAAGGTTTCTTGA+TGG | + | chr5.1:17192070-17192089 | None:intergenic | 45.0% | |
| CTGAGAATTCGTCAGAGGAT+CGG | + | chr5.1:17192756-17192775 | None:intergenic | 45.0% | |
| GAGACATCTGATCCAGAACA+TGG | - | chr5.1:17192595-17192614 | MS.gene72808:intron | 45.0% | |
| GAGGTCAATATGCACTAGTG+AGG | + | chr5.1:17192361-17192380 | None:intergenic | 45.0% | |
| GCTTCTGAATCGCTCTAGTT+AGG | + | chr5.1:17192006-17192025 | None:intergenic | 45.0% | |
| GGAGTTTGAAAAGGAGGTCT+AGG | - | chr5.1:17192260-17192279 | MS.gene72808:intron | 45.0% | |
| GTTGGAATCAGAAGTGACTG+TGG | + | chr5.1:17191026-17191045 | None:intergenic | 45.0% | |
| TTACGTGTATTGCTTCTCGC+AGG | + | chr5.1:17192820-17192839 | None:intergenic | 45.0% | |
| TTTCTGCATATGCAAAGGGG+AGG | + | chr5.1:17192380-17192399 | None:intergenic | 45.0% | |
| ! | AAGTTGGTTGGGGCACATAA+TGG | + | chr5.1:17192045-17192064 | None:intergenic | 45.0% |
| ! | AGAAGAGCATAGGAGACTGA+GGG | - | chr5.1:17193074-17193093 | MS.gene72808:CDS | 45.0% |
| ! | CTTGATGGGAAAGTTGGTTG+GGG | + | chr5.1:17192055-17192074 | None:intergenic | 45.0% |
| ! | GGGATTTTACTGCTTCCAAG+AGG | - | chr5.1:17191156-17191175 | MS.gene72808:CDS | 45.0% |
| ! | TGGAGGGTGTGTTATGGATT+GGG | - | chr5.1:17191938-17191957 | MS.gene72808:intron | 45.0% |
| ! | TTGGAGGGTGTGTTATGGAT+TGG | - | chr5.1:17191937-17191956 | MS.gene72808:intron | 45.0% |
| ! | TTTGGTTGGAGGGTGTGTTA+TGG | - | chr5.1:17191932-17191951 | MS.gene72808:intron | 45.0% |
| AGCTCCTTCAACCTGCCAAA+CGG | - | chr5.1:17192335-17192354 | MS.gene72808:intron | 50.0% | |
| AGGAGAATAGGGCAGAGAGA+AGG | - | chr5.1:17193097-17193116 | MS.gene72808:CDS | 50.0% | |
| AGTTCGAAGATGAGGGAGAG+AGG | - | chr5.1:17191203-17191222 | MS.gene72808:CDS | 50.0% | |
| ATCGTCGTTGATGTCTCCGA+CGG | - | chr5.1:17191046-17191065 | MS.gene72808:CDS | 50.0% | |
| CCAAGAGGAACAAGACGCTT+TGG | - | chr5.1:17191171-17191190 | MS.gene72808:CDS | 50.0% | |
| GAATCGCTCTAGTTAGGGGT+GGG | + | chr5.1:17192000-17192019 | None:intergenic | 50.0% | |
| GAGACTGAGGGAGGAGAATA+GGG | - | chr5.1:17193086-17193105 | MS.gene72808:CDS | 50.0% | |
| GGAGAATAGGGCAGAGAGAA+GGG | - | chr5.1:17193098-17193117 | MS.gene72808:CDS | 50.0% | |
| GGAGACATCAACGACGATGT+TGG | + | chr5.1:17191044-17191063 | None:intergenic | 50.0% | |
| GGGTCAGGATCCATTTGAAC+TGG | - | chr5.1:17191958-17191977 | MS.gene72808:intron | 50.0% | |
| GTGACTGTGGTACTATTCCC+AGG | + | chr5.1:17191013-17191032 | None:intergenic | 50.0% | |
| GTTCGAAGATGAGGGAGAGA+GGG | - | chr5.1:17191204-17191223 | MS.gene72808:CDS | 50.0% | |
| TATGCACTAGTGAGGCCGTT+TGG | + | chr5.1:17192353-17192372 | None:intergenic | 50.0% | |
| TGAATCGCTCTAGTTAGGGG+TGG | + | chr5.1:17192001-17192020 | None:intergenic | 50.0% | |
| ! | AGATGAGGGAGAGAGGGTAT+AGG | - | chr5.1:17191210-17191229 | MS.gene72808:CDS | 50.0% |
| ! | CCAAAGCGTCTTGTTCCTCT+TGG | + | chr5.1:17191174-17191193 | None:intergenic | 50.0% |
| ! | GAGAAGAGCATAGGAGACTG+AGG | - | chr5.1:17193073-17193092 | MS.gene72808:CDS | 50.0% |
| ! | GGAGGGAAAGAGAAGAGCAT+AGG | - | chr5.1:17193064-17193083 | MS.gene72808:CDS | 50.0% |
| ! | GGGCATTGCTTTCCATGTTC+TGG | + | chr5.1:17192610-17192629 | None:intergenic | 50.0% |
| !! | GAACAAGACGCTTTGGGAAG+TGG | - | chr5.1:17191178-17191197 | MS.gene72808:CDS | 50.0% |
| !! | GGTGTGTTATGGATTGGGTC+AGG | - | chr5.1:17191943-17191962 | MS.gene72808:intron | 50.0% |
| AACCACCCCACTTCCTTGGT+GGG | - | chr5.1:17191452-17191471 | MS.gene72808:CDS | 55.0% | |
| AATGGAGATGCAGTGGAGGG+AGG | - | chr5.1:17192942-17192961 | MS.gene72808:CDS | 55.0% | |
| ACAGGAATGGCGGCAGTCAA+TGG | - | chr5.1:17193002-17193021 | MS.gene72808:CDS | 55.0% | |
| AGAGCATAGGAGACTGAGGG+AGG | - | chr5.1:17193077-17193096 | MS.gene72808:CDS | 55.0% | |
| ATGCAACCACCCCACTTCCT+TGG | - | chr5.1:17191448-17191467 | MS.gene72808:CDS | 55.0% | |
| CCTTGTCCCACCAAGGAAGT+GGG | + | chr5.1:17191461-17191480 | None:intergenic | 55.0% | |
| CTTGTCCCACCAAGGAAGTG+GGG | + | chr5.1:17191460-17191479 | None:intergenic | 55.0% | |
| GATAAGGGCGGAGCTTGAGA+GGG | - | chr5.1:17191136-17191155 | MS.gene72808:CDS | 55.0% | |
| GGAGACTGAGGGAGGAGAAT+AGG | - | chr5.1:17193085-17193104 | MS.gene72808:CDS | 55.0% | |
| ! | AACGAAGCCTTGTCCCACCA+AGG | + | chr5.1:17191468-17191487 | None:intergenic | 55.0% |
| ! | GGGGTGGGCTTCACATAATG+AGG | + | chr5.1:17191985-17192004 | None:intergenic | 55.0% |
| ! | TGAGGGAGAGAGGGTATAGG+AGG | - | chr5.1:17191213-17191232 | MS.gene72808:CDS | 55.0% |
| !! | GAGGGAGGTGATGGAAAAGC+GGG | - | chr5.1:17192957-17192976 | MS.gene72808:CDS | 55.0% |
| !! | GGAGGGAGGTGATGGAAAAG+CGG | - | chr5.1:17192956-17192975 | MS.gene72808:CDS | 55.0% |
| CAACCACCCCACTTCCTTGG+TGG | - | chr5.1:17191451-17191470 | MS.gene72808:CDS | 60.0% | |
| CACTAGTGAGGCCGTTTGGC+AGG | + | chr5.1:17192349-17192368 | None:intergenic | 60.0% | |
| CCCACTTCCTTGGTGGGACA+AGG | - | chr5.1:17191458-17191477 | MS.gene72808:CDS | 60.0% | |
| CGATAAGGGCGGAGCTTGAG+AGG | - | chr5.1:17191135-17191154 | MS.gene72808:CDS | 60.0% | |
| GATGCAGTGGAGGGAGGTGA+TGG | - | chr5.1:17192948-17192967 | MS.gene72808:CDS | 60.0% | |
| GCCTTGTCCCACCAAGGAAG+TGG | + | chr5.1:17191462-17191481 | None:intergenic | 60.0% | |
| GTCGTTGATGTCTCCGACGG+CGG | - | chr5.1:17191049-17191068 | MS.gene72808:CDS | 60.0% | |
| ! | GAGGCCGTTTGGCAGGTTGA+AGG | + | chr5.1:17192342-17192361 | None:intergenic | 60.0% |
| !! | GTCTCCTGCTGACTCCACTG+CGG | + | chr5.1:17191101-17191120 | None:intergenic | 60.0% |
| CGGTGGAGGAGACGATGCTC+TGG | - | chr5.1:17190980-17190999 | MS.gene72808:CDS | 65.0% | |
| CTCTCCTCTCTCACCGCCGT+CGG | + | chr5.1:17191065-17191084 | None:intergenic | 65.0% | |
| GATGCTCTGGCAGCTCGCCT+GGG | - | chr5.1:17190993-17191012 | MS.gene72808:CDS | 65.0% | |
| GGATACCAGCTCAGCCGCAG+TGG | - | chr5.1:17191084-17191103 | MS.gene72808:CDS | 65.0% | |
| GTCCCACCAAGGAAGTGGGG+TGG | + | chr5.1:17191457-17191476 | None:intergenic | 65.0% | |
| TCAGCCGCAGTGGAGTCAGC+AGG | - | chr5.1:17191094-17191113 | MS.gene72808:CDS | 65.0% | |
| TGACTCCACTGCGGCTGAGC+TGG | + | chr5.1:17191092-17191111 | None:intergenic | 65.0% | |
| CGACGGCGGTGAGAGAGGAG+AGG | - | chr5.1:17191063-17191082 | MS.gene72808:CDS | 70.0% | |
| CGATGCTCTGGCAGCTCGCC+TGG | - | chr5.1:17190992-17191011 | MS.gene72808:CDS | 70.0% | |
| GTCTCCGACGGCGGTGAGAG+AGG | - | chr5.1:17191058-17191077 | MS.gene72808:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17190969 | 17193170 | 17190969 | ID=MS.gene72808 |
| chr5.1 | mRNA | 17190969 | 17193170 | 17190969 | ID=MS.gene72808.t1;Parent=MS.gene72808 |
| chr5.1 | exon | 17192853 | 17193170 | 17192853 | ID=MS.gene72808.t1.exon1;Parent=MS.gene72808.t1 |
| chr5.1 | CDS | 17192853 | 17193170 | 17192853 | ID=cds.MS.gene72808.t1;Parent=MS.gene72808.t1 |
| chr5.1 | exon | 17190969 | 17191550 | 17190969 | ID=MS.gene72808.t1.exon2;Parent=MS.gene72808.t1 |
| chr5.1 | CDS | 17190969 | 17191550 | 17190969 | ID=cds.MS.gene72808.t1;Parent=MS.gene72808.t1 |
| Gene Sequence |
| Protein sequence |
