Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72877.t1 | XP_003612667.1 | 89.8 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.80E-89 | 339 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72877.t1 | Q8S9H7 | 48.6 | 107 | 46 | 3 | 98 | 204 | 135 | 232 | 3.9e-16 | 86.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72877.t1 | G7K885 | 89.8 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.3e-89 | 339.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene72877.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72877.t1 | MTR_5g027570 | 89.787 | 235 | 21 | 2 | 3 | 237 | 2 | 233 | 1.22e-146 | 409 |
MS.gene72877.t1 | MTR_5g088060 | 57.244 | 283 | 60 | 7 | 3 | 235 | 190 | 461 | 9.25e-86 | 262 |
MS.gene72877.t1 | MTR_5g488160 | 57.244 | 283 | 60 | 7 | 3 | 235 | 190 | 461 | 9.25e-86 | 262 |
MS.gene72877.t1 | MTR_5g027550 | 57.959 | 245 | 74 | 5 | 3 | 235 | 2 | 229 | 1.63e-83 | 248 |
MS.gene72877.t1 | MTR_5g088010 | 57.255 | 255 | 54 | 4 | 30 | 235 | 1 | 249 | 2.15e-82 | 246 |
MS.gene72877.t1 | MTR_1g111830 | 41.333 | 150 | 70 | 4 | 59 | 204 | 85 | 220 | 1.84e-25 | 100 |
MS.gene72877.t1 | MTR_5g081860 | 37.714 | 175 | 91 | 4 | 30 | 193 | 66 | 233 | 5.21e-24 | 97.1 |
MS.gene72877.t1 | MTR_4g111975 | 32.683 | 205 | 105 | 6 | 29 | 206 | 45 | 243 | 1.82e-23 | 96.3 |
MS.gene72877.t1 | MTR_8g063600 | 44.660 | 103 | 55 | 1 | 69 | 169 | 78 | 180 | 2.43e-23 | 95.9 |
MS.gene72877.t1 | MTR_7g067080 | 44.094 | 127 | 58 | 4 | 84 | 208 | 129 | 244 | 1.67e-22 | 94.0 |
MS.gene72877.t1 | MTR_3g462790 | 43.902 | 123 | 61 | 2 | 85 | 207 | 137 | 251 | 2.30e-22 | 93.6 |
MS.gene72877.t1 | MTR_8g063870 | 43.810 | 105 | 54 | 1 | 65 | 169 | 67 | 166 | 4.21e-22 | 92.0 |
MS.gene72877.t1 | MTR_5g069710 | 56.790 | 81 | 32 | 2 | 85 | 164 | 122 | 200 | 6.10e-22 | 92.4 |
MS.gene72877.t1 | MTR_4g100630 | 38.793 | 116 | 67 | 2 | 45 | 160 | 47 | 158 | 9.55e-22 | 92.0 |
MS.gene72877.t1 | MTR_2g100930 | 54.286 | 70 | 30 | 1 | 91 | 160 | 105 | 172 | 2.06e-20 | 88.6 |
MS.gene72877.t1 | MTR_3g104370 | 43.363 | 113 | 58 | 3 | 62 | 171 | 59 | 168 | 3.80e-20 | 85.9 |
MS.gene72877.t1 | MTR_1g048660 | 54.286 | 70 | 30 | 1 | 97 | 166 | 14 | 81 | 1.03e-18 | 78.6 |
MS.gene72877.t1 | MTR_6g092540 | 52.857 | 70 | 31 | 1 | 91 | 160 | 93 | 160 | 1.34e-18 | 82.8 |
MS.gene72877.t1 | MTR_5g037080 | 51.852 | 81 | 31 | 2 | 66 | 142 | 73 | 149 | 6.84e-18 | 81.3 |
MS.gene72877.t1 | MTR_8g101650 | 51.429 | 70 | 31 | 1 | 91 | 160 | 101 | 167 | 1.02e-17 | 80.5 |
MS.gene72877.t1 | MTR_4g107230 | 55.738 | 61 | 27 | 0 | 81 | 141 | 70 | 130 | 1.39e-17 | 80.1 |
MS.gene72877.t1 | MTR_4g015130 | 54.237 | 59 | 25 | 1 | 105 | 163 | 3 | 59 | 1.03e-15 | 70.5 |
MS.gene72877.t1 | MTR_1g083180 | 38.060 | 134 | 62 | 4 | 37 | 169 | 22 | 135 | 1.14e-15 | 72.8 |
MS.gene72877.t1 | MTR_5g075760 | 50.000 | 88 | 38 | 3 | 96 | 182 | 106 | 188 | 1.15e-15 | 73.6 |
MS.gene72877.t1 | MTR_1g033620 | 53.226 | 62 | 27 | 1 | 110 | 171 | 20 | 79 | 3.45e-15 | 72.8 |
MS.gene72877.t1 | MTR_0036s0260 | 39.241 | 79 | 46 | 1 | 95 | 173 | 28 | 104 | 5.50e-15 | 71.6 |
MS.gene72877.t1 | MTR_8g072990 | 47.761 | 67 | 35 | 0 | 90 | 156 | 95 | 161 | 1.13e-14 | 71.2 |
MS.gene72877.t1 | MTR_5g075790 | 39.024 | 123 | 65 | 4 | 65 | 182 | 79 | 196 | 2.97e-14 | 69.7 |
MS.gene72877.t1 | MTR_6g043490 | 44.156 | 77 | 40 | 1 | 92 | 165 | 104 | 180 | 1.19e-13 | 68.2 |
MS.gene72877.t1 | MTR_2g090305 | 40.506 | 79 | 45 | 1 | 95 | 173 | 28 | 104 | 1.26e-13 | 67.4 |
MS.gene72877.t1 | MTR_8g073050 | 41.096 | 73 | 43 | 0 | 90 | 162 | 98 | 170 | 4.53e-13 | 66.6 |
MS.gene72877.t1 | MTR_6g043480 | 45.588 | 68 | 34 | 1 | 90 | 154 | 102 | 169 | 4.99e-13 | 66.6 |
MS.gene72877.t1 | MTR_3g070110 | 47.500 | 80 | 34 | 3 | 96 | 168 | 96 | 174 | 1.06e-12 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72877.t1 | AT5G08520 | 44.355 | 124 | 55 | 2 | 60 | 171 | 71 | 192 | 6.82e-26 | 102 |
MS.gene72877.t1 | AT5G23650 | 44.444 | 117 | 60 | 2 | 55 | 171 | 83 | 194 | 1.91e-23 | 97.1 |
MS.gene72877.t1 | AT5G04760 | 53.012 | 83 | 37 | 1 | 80 | 162 | 84 | 164 | 2.79e-23 | 94.0 |
MS.gene72877.t1 | AT3G10580 | 33.511 | 188 | 98 | 7 | 22 | 206 | 39 | 202 | 2.80e-23 | 95.1 |
MS.gene72877.t1 | AT3G10580 | 33.511 | 188 | 98 | 7 | 22 | 206 | 39 | 202 | 7.76e-23 | 94.4 |
MS.gene72877.t1 | AT5G58900 | 60.000 | 75 | 27 | 2 | 91 | 164 | 137 | 209 | 1.21e-22 | 94.0 |
MS.gene72877.t1 | AT1G49010 | 50.000 | 86 | 40 | 2 | 87 | 171 | 126 | 209 | 1.36e-22 | 94.4 |
MS.gene72877.t1 | AT2G38090 | 53.659 | 82 | 35 | 2 | 84 | 164 | 130 | 209 | 4.21e-21 | 89.7 |
MS.gene72877.t1 | AT3G11280 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 1.20e-20 | 88.2 |
MS.gene72877.t1 | AT3G11280 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 1.20e-20 | 88.2 |
MS.gene72877.t1 | AT5G47390 | 46.465 | 99 | 46 | 3 | 84 | 181 | 89 | 181 | 1.31e-20 | 89.4 |
MS.gene72877.t1 | AT5G61620 | 55.000 | 80 | 30 | 2 | 84 | 163 | 101 | 174 | 2.77e-20 | 87.8 |
MS.gene72877.t1 | AT5G01200 | 56.000 | 75 | 30 | 2 | 91 | 164 | 142 | 214 | 4.26e-20 | 86.7 |
MS.gene72877.t1 | AT5G05790 | 51.136 | 88 | 37 | 2 | 83 | 166 | 119 | 204 | 4.79e-19 | 84.0 |
MS.gene72877.t1 | AT5G05790 | 51.136 | 88 | 37 | 2 | 83 | 166 | 119 | 204 | 4.79e-19 | 84.0 |
MS.gene72877.t1 | AT5G56840 | 51.429 | 70 | 33 | 1 | 91 | 160 | 87 | 155 | 5.59e-18 | 80.1 |
MS.gene72877.t1 | AT3G16350 | 52.703 | 74 | 33 | 2 | 70 | 142 | 112 | 184 | 1.09e-17 | 81.6 |
MS.gene72877.t1 | AT1G70000 | 42.857 | 105 | 52 | 3 | 42 | 142 | 45 | 145 | 3.75e-17 | 78.6 |
MS.gene72877.t1 | AT1G70000 | 42.857 | 105 | 52 | 3 | 42 | 142 | 45 | 145 | 3.75e-17 | 78.6 |
MS.gene72877.t1 | AT1G19000 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 3.83e-17 | 79.0 |
MS.gene72877.t1 | AT1G19000 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 3.83e-17 | 79.0 |
MS.gene72877.t1 | AT1G74840 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 7.02e-17 | 77.4 |
MS.gene72877.t1 | AT1G74840 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 8.12e-17 | 77.8 |
MS.gene72877.t1 | AT4G09450 | 50.000 | 74 | 35 | 1 | 90 | 163 | 86 | 157 | 1.51e-16 | 75.9 |
MS.gene72877.t1 | AT3G10590 | 41.667 | 96 | 52 | 2 | 69 | 163 | 84 | 176 | 1.02e-14 | 70.9 |
Find 43 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTACATCTTTCACATTT+TGG | 0.117923 | 5.1:-18110246 | None:intergenic |
TGAGAAGATGCGCGACTTAT+TGG | 0.189075 | 5.1:+18110489 | MS.gene72877:CDS |
TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5.1:+18110114 | MS.gene72877:intron |
TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5.1:+18110453 | MS.gene72877:CDS |
TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 5.1:-18109263 | None:intergenic |
TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5.1:-18110472 | None:intergenic |
GCATGGCTAGCAATTTGAAT+TGG | 0.406712 | 5.1:-18110205 | None:intergenic |
AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5.1:+18110171 | MS.gene72877:CDS |
TTGTGCTTGCTTTGTCCAAT+CGG | 0.452519 | 5.1:+18110439 | MS.gene72877:CDS |
AATGAGCGGACTTCAATTCA+AGG | 0.465890 | 5.1:+18109116 | MS.gene72877:CDS |
CGGAAGGAATACCATCTTGT+TGG | 0.479644 | 5.1:-18110342 | None:intergenic |
CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5.1:+18109327 | MS.gene72877:CDS |
AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5.1:+18109328 | MS.gene72877:CDS |
TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 5.1:+18109056 | None:intergenic |
GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 5.1:+18109269 | MS.gene72877:CDS |
GACACAAGCTTAAACAAGAA+TGG | 0.520303 | 5.1:+18110295 | MS.gene72877:CDS |
ATGTGAAAGATGTAGAGAAG+AGG | 0.526828 | 5.1:+18110251 | MS.gene72877:CDS |
ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5.1:+18110118 | MS.gene72877:intron |
GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5.1:-18110385 | None:intergenic |
TGTTCCATGCTATTCTCAGA+GGG | 0.555847 | 5.1:-18109140 | None:intergenic |
TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 5.1:-18109141 | None:intergenic |
TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5.1:+18109340 | MS.gene72877:CDS |
TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5.1:-18110454 | None:intergenic |
TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 5.1:+18110119 | MS.gene72877:intron |
GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5.1:+18109321 | MS.gene72877:CDS |
TTCATTAGAGTTTAGCATTG+CGG | 0.571002 | 5.1:-18109213 | None:intergenic |
GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5.1:+18109336 | MS.gene72877:CDS |
CTCGCTGTTGACCAACAAGA+TGG | 0.575706 | 5.1:+18110331 | MS.gene72877:CDS |
CAAAATGAGACTCCTCCTCA+AGG | 0.583176 | 5.1:+18110373 | MS.gene72877:CDS |
GGACAAAGCAAGCACAACAT+TGG | 0.587274 | 5.1:-18110433 | None:intergenic |
GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 5.1:+18109344 | MS.gene72877:CDS |
TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5.1:+18109322 | MS.gene72877:CDS |
CAAGCTGAGTCAGTACAAGA+AGG | 0.604309 | 5.1:+18109293 | MS.gene72877:CDS |
GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5.1:+18110117 | MS.gene72877:intron |
CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 5.1:+18109248 | MS.gene72877:CDS |
CGACACTGATGTCATTGAGT+CGG | 0.619037 | 5.1:+18109181 | MS.gene72877:CDS |
ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5.1:+18109102 | MS.gene72877:CDS |
TCATTTAAATCGATATGATG+AGG | 0.628741 | 5.1:-18109098 | None:intergenic |
GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5.1:+18109314 | MS.gene72877:CDS |
AGGTCCCTCTGAGAATAGCA+TGG | 0.632380 | 5.1:+18109136 | MS.gene72877:CDS |
GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5.1:+18109315 | MS.gene72877:CDS |
ATTAGAGTTTAGCATTGCGG+CGG | 0.651248 | 5.1:-18109210 | None:intergenic |
TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5.1:-18110388 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGAATTGAAAAAAAAAATA+TGG | - | chr5.1:18109594-18109613 | None:intergenic | 10.0% |
!!! | TACAAATATAAATTTTGTTT+TGG | + | chr5.1:18109460-18109479 | MS.gene72877:intron | 10.0% |
!!! | TTTTTTCAATTCTATATTTT+AGG | + | chr5.1:18109600-18109619 | MS.gene72877:intron | 10.0% |
!! | AAAAATATATATAACTTCCA+AGG | - | chr5.1:18109396-18109415 | None:intergenic | 15.0% |
!!! | TGGAAGTTATATATATTTTT+TGG | + | chr5.1:18109396-18109415 | MS.gene72877:intron | 15.0% |
!! | AGATATTTCAAAAGAATTTG+TGG | + | chr5.1:18110171-18110190 | MS.gene72877:CDS | 20.0% |
!! | GTAAATTAGTACATATCAAT+TGG | - | chr5.1:18109808-18109827 | None:intergenic | 20.0% |
!!! | TTCTATAATTTGTGATGTAT+AGG | + | chr5.1:18110104-18110123 | MS.gene72877:intron | 20.0% |
! | AGATGCAAATTAATCTTTCT+AGG | + | chr5.1:18109937-18109956 | MS.gene72877:intron | 25.0% |
! | TCATTTAAATCGATATGATG+AGG | - | chr5.1:18109101-18109120 | None:intergenic | 25.0% |
!!! | ATCATATCGATTTAAATGAG+CGG | + | chr5.1:18109102-18109121 | MS.gene72877:CDS | 25.0% |
!!! | TTGGTGGATAAAGAATTTTT+GGG | - | chr5.1:18110230-18110249 | None:intergenic | 25.0% |
!!! | TTTGGTGGATAAAGAATTTT+TGG | - | chr5.1:18110231-18110250 | None:intergenic | 25.0% |
GTAAGTATTCAATCTATCCT+TGG | + | chr5.1:18109376-18109395 | MS.gene72877:intron | 30.0% | |
TTCATTAGAGTTTAGCATTG+CGG | - | chr5.1:18109216-18109235 | None:intergenic | 30.0% | |
TTCTCAAGTTTCTCTATATC+CGG | - | chr5.1:18110475-18110494 | None:intergenic | 30.0% | |
! | CATATCAATTGGTAGTTACA+AGG | - | chr5.1:18109797-18109816 | None:intergenic | 30.0% |
! | TCAAGTGTTTGCAATGTTTT+GGG | + | chr5.1:18109999-18110018 | MS.gene72877:intron | 30.0% |
! | TCTCTACATCTTTCACATTT+TGG | - | chr5.1:18110249-18110268 | None:intergenic | 30.0% |
! | TTCAAGTGTTTGCAATGTTT+TGG | + | chr5.1:18109998-18110017 | MS.gene72877:intron | 30.0% |
AAAAATATGGTAAGGGACGT+TGG | + | chr5.1:18110146-18110165 | MS.gene72877:CDS | 35.0% | |
AATGTTAACTAGTGTCCCAA+GGG | - | chr5.1:18109569-18109588 | None:intergenic | 35.0% | |
ATGTGAAAGATGTAGAGAAG+AGG | + | chr5.1:18110251-18110270 | MS.gene72877:CDS | 35.0% | |
GACACAAGCTTAAACAAGAA+TGG | + | chr5.1:18110295-18110314 | MS.gene72877:CDS | 35.0% | |
GGAAGTAATGAAGCTAACTT+AGG | + | chr5.1:18109269-18109288 | MS.gene72877:CDS | 35.0% | |
GGGCTAGAAAAATATGGTAA+GGG | + | chr5.1:18110139-18110158 | MS.gene72877:CDS | 35.0% | |
TTAGCTTCATTACTTCCTTC+AGG | - | chr5.1:18109266-18109285 | None:intergenic | 35.0% | |
! | CTACATCTTTCACATTTTGG+TGG | - | chr5.1:18110246-18110265 | None:intergenic | 35.0% |
! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5.1:18110114-18110133 | MS.gene72877:intron | 35.0% |
!! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5.1:18110118-18110137 | MS.gene72877:intron | 35.0% |
!! | GGATAAAGAATTTTTGGGCA+TGG | - | chr5.1:18110225-18110244 | None:intergenic | 35.0% |
AATGCTTAACCAATGCCCTT+GGG | + | chr5.1:18109551-18109570 | MS.gene72877:intron | 40.0% | |
AGTGACTAGACACTCAACTT+TGG | + | chr5.1:18109728-18109747 | MS.gene72877:intron | 40.0% | |
ATTAGAGTTTAGCATTGCGG+CGG | - | chr5.1:18109213-18109232 | None:intergenic | 40.0% | |
ATTCCTTAACCATTGCCCTA+AGG | - | chr5.1:18109439-18109458 | None:intergenic | 40.0% | |
CAAGGATGTTGATCTACATG+CGG | - | chr5.1:18109779-18109798 | None:intergenic | 40.0% | |
GAATGTTAACTAGTGTCCCA+AGG | - | chr5.1:18109570-18109589 | None:intergenic | 40.0% | |
GCATGGCTAGCAATTTGAAT+TGG | - | chr5.1:18110208-18110227 | None:intergenic | 40.0% | |
GGGGCTAGAAAAATATGGTA+AGG | + | chr5.1:18110138-18110157 | MS.gene72877:CDS | 40.0% | |
TGTTCCATGCTATTCTCAGA+GGG | - | chr5.1:18109143-18109162 | None:intergenic | 40.0% | |
TTCCTTAACCATTGCCCTAA+GGG | - | chr5.1:18109438-18109457 | None:intergenic | 40.0% | |
TTGTGCTTGCTTTGTCCAAT+CGG | + | chr5.1:18110439-18110458 | MS.gene72877:CDS | 40.0% | |
TTGTTCCATGCTATTCTCAG+AGG | - | chr5.1:18109144-18109163 | None:intergenic | 40.0% | |
! | AATGAGCGGACTTCAATTCA+AGG | + | chr5.1:18109116-18109135 | MS.gene72877:CDS | 40.0% |
! | AGTCTCATTTTGTTGCTCGA+CGG | - | chr5.1:18110365-18110384 | None:intergenic | 40.0% |
! | TCCAATCGGTTCTACAATTC+CGG | + | chr5.1:18110453-18110472 | MS.gene72877:CDS | 40.0% |
!! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5.1:18110117-18110136 | MS.gene72877:intron | 40.0% |
!! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5.1:18110119-18110138 | MS.gene72877:intron | 40.0% |
AACAAATGCCCTTAGGGCAA+TGG | + | chr5.1:18109427-18109446 | MS.gene72877:intron | 45.0% | |
CAAAATGAGACTCCTCCTCA+AGG | + | chr5.1:18110373-18110392 | MS.gene72877:CDS | 45.0% | |
CAAGCTGAGTCAGTACAAGA+AGG | + | chr5.1:18109293-18109312 | MS.gene72877:CDS | 45.0% | |
CGACACTGATGTCATTGAGT+CGG | + | chr5.1:18109181-18109200 | MS.gene72877:CDS | 45.0% | |
CGGAAGGAATACCATCTTGT+TGG | - | chr5.1:18110345-18110364 | None:intergenic | 45.0% | |
CTGGAGGGGCTAGAAAAATA+TGG | + | chr5.1:18110133-18110152 | MS.gene72877:CDS | 45.0% | |
CTTGCCAACAAATGCCCTTA+GGG | + | chr5.1:18109421-18109440 | MS.gene72877:intron | 45.0% | |
GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5.1:18109315-18109334 | MS.gene72877:CDS | 45.0% | |
GAATGCTTAACCAATGCCCT+TGG | + | chr5.1:18109550-18109569 | MS.gene72877:intron | 45.0% | |
GGACAAAGCAAGCACAACAT+TGG | - | chr5.1:18110436-18110455 | None:intergenic | 45.0% | |
TCCGGAATTGTAGAACCGAT+TGG | - | chr5.1:18110457-18110476 | None:intergenic | 45.0% | |
TCTTGCCAACAAATGCCCTT+AGG | + | chr5.1:18109420-18109439 | MS.gene72877:intron | 45.0% | |
TGAGAAGATGCGCGACTTAT+TGG | + | chr5.1:18110489-18110508 | MS.gene72877:CDS | 45.0% | |
TGTGTCTGTTGCATTCCTTG+AGG | - | chr5.1:18110391-18110410 | None:intergenic | 45.0% | |
! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5.1:18109340-18109359 | MS.gene72877:CDS | 45.0% |
! | TCATTTTGTTGCTCGACGGA+AGG | - | chr5.1:18110361-18110380 | None:intergenic | 45.0% |
!! | ATTGCCCTAAGGGCATTTGT+TGG | - | chr5.1:18109428-18109447 | None:intergenic | 45.0% |
CAAGCTGAGTCAGTACCTGA+AGG | + | chr5.1:18109248-18109267 | MS.gene72877:CDS | 50.0% | |
CTCGCTGTTGACCAACAAGA+TGG | + | chr5.1:18110331-18110350 | MS.gene72877:CDS | 50.0% | |
GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5.1:18109314-18109333 | MS.gene72877:CDS | 50.0% | |
GTCTGTTGCATTCCTTGAGG+AGG | - | chr5.1:18110388-18110407 | None:intergenic | 50.0% | |
TGCCCTTAGGGCAATGGTTA+AGG | + | chr5.1:18109433-18109452 | MS.gene72877:intron | 50.0% | |
! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5.1:18109328-18109347 | MS.gene72877:CDS | 50.0% |
! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5.1:18109563-18109582 | None:intergenic | 50.0% |
! | AGGTCCCTCTGAGAATAGCA+TGG | + | chr5.1:18109136-18109155 | MS.gene72877:CDS | 50.0% |
! | GAAAGGGTACATTGGACGGA+AGG | + | chr5.1:18109344-18109363 | MS.gene72877:CDS | 50.0% |
! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5.1:18109322-18109341 | MS.gene72877:CDS | 50.0% |
! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5.1:18109327-18109346 | MS.gene72877:CDS | 55.0% |
! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5.1:18109336-18109355 | MS.gene72877:CDS | 55.0% |
! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5.1:18109321-18109340 | MS.gene72877:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 18109068 | 18110531 | 18109068 | ID=MS.gene72877 |
chr5.1 | mRNA | 18109068 | 18110531 | 18109068 | ID=MS.gene72877.t1;Parent=MS.gene72877 |
chr5.1 | exon | 18109068 | 18109375 | 18109068 | ID=MS.gene72877.t1.exon1;Parent=MS.gene72877.t1 |
chr5.1 | CDS | 18109068 | 18109375 | 18109068 | ID=cds.MS.gene72877.t1;Parent=MS.gene72877.t1 |
chr5.1 | exon | 18110126 | 18110531 | 18110126 | ID=MS.gene72877.t1.exon2;Parent=MS.gene72877.t1 |
chr5.1 | CDS | 18110126 | 18110531 | 18110126 | ID=cds.MS.gene72877.t1;Parent=MS.gene72877.t1 |
Gene Sequence |
Protein sequence |