AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73037

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73037.t1 MTR_3g022830 97.701 435 10 0 9 443 4 438 0.0 884
MS.gene73037.t1 MTR_5g009080 55.011 449 190 5 7 443 32 480 6.88e-171 488
MS.gene73037.t1 MTR_4g076140 50.336 447 212 4 7 443 25 471 6.45e-161 462
MS.gene73037.t1 MTR_3g022580 73.298 191 20 2 253 443 26 185 1.51e-93 280
MS.gene73037.t1 MTR_5g097480 30.788 419 230 6 31 441 178 544 6.05e-61 207
MS.gene73037.t1 MTR_3g022005 92.708 96 7 0 348 443 32 127 3.42e-59 190
MS.gene73037.t1 MTR_1g029420 29.976 417 236 4 31 441 226 592 5.22e-59 203
MS.gene73037.t1 MTR_2g082090 30.935 417 230 7 31 440 213 578 2.06e-55 193
MS.gene73037.t1 MTR_5g094450 27.685 419 247 6 31 441 162 532 1.00e-54 191
MS.gene73037.t1 MTR_3g027430 51.835 218 44 6 13 230 124 280 1.35e-54 185
MS.gene73037.t1 MTR_3g027430 57.955 88 3 1 356 443 279 332 7.10e-23 99.4
MS.gene73037.t1 MTR_3g089055 28.266 421 246 4 27 441 195 565 4.45e-54 189
MS.gene73037.t1 MTR_3g089055 28.266 421 246 4 27 441 200 570 4.75e-54 189
MS.gene73037.t1 MTR_7g027190 28.899 436 222 8 31 441 301 673 1.85e-53 190
MS.gene73037.t1 MTR_3g056110 27.818 417 245 6 31 441 176 542 1.70e-52 185
MS.gene73037.t1 MTR_7g074650 29.268 410 231 7 33 441 441 792 3.55e-51 185
MS.gene73037.t1 MTR_3g021320 58.667 150 34 3 130 276 1 125 2.10e-47 159
MS.gene73037.t1 MTR_4g133660 26.841 421 243 7 31 440 176 542 4.92e-47 170
MS.gene73037.t1 MTR_4g102790 27.078 421 244 8 31 440 293 661 4.93e-46 169
MS.gene73037.t1 MTR_8g442410 28.404 426 234 10 31 441 156 525 8.80e-45 164
MS.gene73037.t1 MTR_2g097467 28.469 418 237 8 31 440 290 653 4.54e-44 163
MS.gene73037.t1 MTR_2g026250 26.492 419 249 7 31 441 229 596 4.57e-44 162
MS.gene73037.t1 MTR_4g064160 27.751 418 243 7 31 440 317 683 1.65e-43 162
MS.gene73037.t1 MTR_2g097410 26.316 418 251 6 31 440 372 740 2.22e-43 162
MS.gene73037.t1 MTR_4g064200 28.469 418 238 8 31 440 285 649 2.05e-42 159
MS.gene73037.t1 MTR_7g062120 27.446 419 245 7 31 441 373 740 6.20e-42 158
MS.gene73037.t1 MTR_4g064150 27.078 421 246 8 31 440 362 732 6.70e-42 158
MS.gene73037.t1 MTR_4g104020 26.241 423 248 6 31 441 150 520 3.72e-41 153
MS.gene73037.t1 MTR_2g097473 27.818 417 241 7 31 440 290 653 5.37e-41 155
MS.gene73037.t1 MTR_3g025350 43.396 212 36 5 181 391 1 129 1.47e-40 141
MS.gene73037.t1 MTR_2g097310 26.730 419 244 8 31 440 273 637 2.03e-40 153
MS.gene73037.t1 MTR_2g097350 26.742 445 261 10 6 440 250 639 2.66e-40 152
MS.gene73037.t1 MTR_2g097390 25.301 415 255 7 31 440 276 640 3.85e-40 152
MS.gene73037.t1 MTR_4g064120 25.837 418 247 9 31 436 255 621 1.32e-39 150
MS.gene73037.t1 MTR_4g064180 25.962 416 249 7 31 436 255 621 7.33e-39 148
MS.gene73037.t1 MTR_2g097463 27.338 417 243 7 31 440 291 654 3.41e-38 147
MS.gene73037.t1 MTR_4g097080 23.991 446 269 10 10 441 114 503 1.77e-36 140
MS.gene73037.t1 MTR_4g076020 28.641 412 222 12 33 441 87 429 2.99e-36 138
MS.gene73037.t1 MTR_2g034280 28.271 428 236 9 31 442 204 576 3.10e-36 140
MS.gene73037.t1 MTR_4g077760 27.103 428 240 10 26 441 188 555 9.07e-36 139
MS.gene73037.t1 MTR_1g069725 26.118 425 247 10 24 443 103 465 1.49e-35 137
MS.gene73037.t1 MTR_2g034250 27.045 440 229 8 31 442 211 586 4.40e-35 137
MS.gene73037.t1 MTR_2g034260 27.442 430 239 9 31 442 211 585 6.19e-34 134
MS.gene73037.t1 MTR_2g097380 24.694 409 228 7 35 440 229 560 3.09e-33 132
MS.gene73037.t1 MTR_2g089100 25.708 424 267 10 31 440 53 442 3.34e-33 130
MS.gene73037.t1 MTR_5g015490 24.000 425 260 9 31 441 115 490 2.09e-32 129
MS.gene73037.t1 MTR_1g106590 50.000 110 55 0 32 141 132 241 1.22e-30 121
MS.gene73037.t1 MTR_1g106590 48.936 94 45 2 256 346 247 340 1.91e-14 74.7
MS.gene73037.t1 MTR_5g058860 24.190 401 236 7 56 440 148 496 1.74e-28 117
MS.gene73037.t1 MTR_1g096030 24.612 451 248 15 21 441 71 459 2.72e-28 116
MS.gene73037.t1 MTR_3g065980 39.752 161 83 3 296 442 381 541 3.12e-28 117
MS.gene73037.t1 MTR_3g065980 30.144 209 132 3 31 234 173 372 1.18e-27 115
MS.gene73037.t1 MTR_3g072710 24.667 450 256 14 17 440 107 499 1.83e-27 114
MS.gene73037.t1 MTR_4g095500 23.982 442 270 10 31 440 60 467 1.98e-25 108
MS.gene73037.t1 MTR_7g057230 25.714 420 244 12 31 440 295 656 1.39e-23 103
MS.gene73037.t1 MTR_7g109580 23.291 395 239 8 57 442 216 555 1.62e-23 103
MS.gene73037.t1 MTR_5g015950 22.864 433 288 11 31 440 36 445 1.94e-23 102
MS.gene73037.t1 MTR_3g053270 22.864 433 288 11 31 440 36 445 1.94e-23 102
MS.gene73037.t1 MTR_3g025340 75.410 61 15 0 88 148 9 69 3.94e-23 92.8
MS.gene73037.t1 MTR_1g086970 24.181 397 230 11 61 442 139 479 1.91e-19 90.9
MS.gene73037.t1 MTR_3g021090 43.411 129 58 4 144 269 297 413 3.69e-19 89.4
MS.gene73037.t1 MTR_6g047750 24.471 425 249 16 31 441 296 662 2.28e-18 88.2
MS.gene73037.t1 MTR_2g099110 22.299 435 256 11 31 441 75 451 6.49e-18 86.3
MS.gene73037.t1 MTR_8g093070 23.038 395 229 12 57 440 165 495 7.23e-17 83.2
MS.gene73037.t1 MTR_0092s0100 31.915 141 94 2 31 171 376 514 7.86e-11 64.7
MS.gene73037.t1 MTR_0092s0100 31.915 141 94 2 31 171 373 511 7.99e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73037.t1 AT1G50420 49.554 448 215 4 7 443 34 481 2.39e-151 439
MS.gene73037.t1 AT1G66350 31.010 416 219 8 31 442 156 507 1.81e-63 213
MS.gene73037.t1 AT5G48150 30.324 432 237 5 16 441 117 490 2.32e-61 207
MS.gene73037.t1 AT5G48150 30.324 432 237 5 16 441 117 490 2.32e-61 207
MS.gene73037.t1 AT5G48150 30.324 432 237 5 16 441 117 490 2.32e-61 207
MS.gene73037.t1 AT5G48150 30.324 432 237 5 16 441 117 490 2.32e-61 207
MS.gene73037.t1 AT3G03450 29.009 424 228 9 31 442 184 546 9.98e-59 201
MS.gene73037.t1 AT1G50600 29.496 417 238 4 31 441 160 526 6.48e-57 196
MS.gene73037.t1 AT2G04890 30.583 412 233 7 31 441 54 413 8.27e-57 193
MS.gene73037.t1 AT1G50600 29.496 417 238 4 31 441 231 597 1.80e-56 196
MS.gene73037.t1 AT1G50600 29.496 417 238 4 31 441 235 601 1.81e-56 197
MS.gene73037.t1 AT1G14920 29.343 426 219 10 31 442 173 530 5.68e-55 191
MS.gene73037.t1 AT2G01570 28.504 421 229 8 31 442 225 582 2.85e-54 190
MS.gene73037.t1 AT4G17230 28.297 417 243 4 31 441 159 525 5.86e-52 183
MS.gene73037.t1 AT4G17230 28.297 417 243 4 31 441 159 525 5.86e-52 183
MS.gene73037.t1 AT3G54220 28.241 432 250 7 15 443 278 652 4.04e-51 183
MS.gene73037.t1 AT1G21450 29.009 424 244 7 25 441 220 593 2.40e-50 180
MS.gene73037.t1 AT1G63100 25.059 427 252 5 31 440 253 628 7.47e-45 165
MS.gene73037.t1 AT1G63100 25.059 427 252 5 31 440 278 653 9.75e-45 165
MS.gene73037.t1 AT2G29060 28.504 421 239 10 31 440 285 654 6.38e-43 160
MS.gene73037.t1 AT2G29060 28.504 421 239 10 31 440 322 691 8.38e-43 160
MS.gene73037.t1 AT1G07530 27.078 421 243 9 31 440 397 764 4.24e-42 159
MS.gene73037.t1 AT5G59450 29.314 423 235 11 31 441 228 598 1.11e-41 156
MS.gene73037.t1 AT5G41920 27.685 419 233 9 31 441 44 400 1.27e-41 152
MS.gene73037.t1 AT3G46600 28.230 418 242 9 31 441 5 371 1.89e-38 143
MS.gene73037.t1 AT3G46600 28.230 418 242 9 31 441 181 547 5.08e-37 142
MS.gene73037.t1 AT1G55580 25.166 453 245 7 31 441 45 445 6.94e-37 140
MS.gene73037.t1 AT3G46600 28.640 419 239 10 31 441 213 579 1.24e-36 142
MS.gene73037.t1 AT1G07520 25.117 426 245 9 34 440 158 528 2.19e-35 137
MS.gene73037.t1 AT1G07520 25.117 426 245 9 34 440 158 528 2.19e-35 137
MS.gene73037.t1 AT1G07520 25.117 426 245 9 34 440 323 693 5.87e-35 138
MS.gene73037.t1 AT1G07520 25.117 426 245 9 34 440 322 692 6.25e-35 138
MS.gene73037.t1 AT2G37650 25.837 418 251 7 31 441 348 713 2.25e-34 136
MS.gene73037.t1 AT5G66770 26.950 423 238 9 31 441 221 584 2.34e-34 135
MS.gene73037.t1 AT2G37650 25.837 418 251 7 31 441 336 701 2.50e-34 136
MS.gene73037.t1 AT4G37650 24.201 438 250 13 31 441 147 529 3.74e-32 128
MS.gene73037.t1 AT2G29065 24.590 427 253 8 31 440 253 627 7.28e-32 128
MS.gene73037.t1 AT3G50650 25.495 404 227 7 53 441 198 542 1.21e-31 127
MS.gene73037.t1 AT5G52510 23.843 432 248 9 31 441 269 640 1.91e-29 121
MS.gene73037.t1 AT5G17490 30.769 208 133 5 31 234 161 361 6.61e-29 119
MS.gene73037.t1 AT5G17490 38.000 150 90 2 295 442 369 517 8.27e-26 110
MS.gene73037.t1 AT3G49950 22.275 422 271 11 31 440 31 407 5.29e-25 106
MS.gene73037.t1 AT4G08250 22.717 427 262 12 28 440 104 476 1.40e-22 100

Find 68 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAAGTTTGCTAATTAT+TGG 0.118308 3.2:+11779830 None:intergenic
CTGTATCGGCCTGGAAATTT+AGG 0.184893 3.2:-11779121 MS.gene73037:CDS
GACAACTGAAGCAGGGATTT+TGG 0.213154 3.2:-11779873 MS.gene73037:CDS
TCTGAATGGATGTAATTTAA+TGG 0.250687 3.2:-11779483 MS.gene73037:CDS
ATGGATTCAAAGACTTAAAA+TGG 0.281483 3.2:-11779282 MS.gene73037:CDS
CAACTCAGCTGTTATGCATT+AGG 0.310901 3.2:-11780424 MS.gene73037:CDS
AAACTCGAGAGCATGCTTCT+TGG 0.323417 3.2:-11779374 MS.gene73037:CDS
TTAAGAAAGATCCCCATCTT+AGG 0.362039 3.2:+11779560 None:intergenic
TAATTGCTTGATTTGTGATC+AGG 0.367971 3.2:+11780071 None:intergenic
CCGCCCCATCTGAAAATTAC+AGG 0.369403 3.2:-11779941 MS.gene73037:CDS
TTTAGGTGCTTCACCTAAGA+TGG 0.374066 3.2:-11779573 MS.gene73037:CDS
ATGATTGTTTACTTGTTTGT+TGG 0.377997 3.2:-11779163 MS.gene73037:CDS
AAGAGGTGATAATGCTGAAT+CGG 0.390322 3.2:+11779598 None:intergenic
GAATCATCACCTAAATTTCC+AGG 0.414889 3.2:+11779112 None:intergenic
AATTCCCTCAGCCAGTGATA+TGG 0.418979 3.2:+11780397 None:intergenic
CACTCAATAAGAGGGATCAT+TGG 0.426274 3.2:+11780349 None:intergenic
CCTTGCCACTGATGACGAAA+TGG 0.436802 3.2:-11779732 MS.gene73037:CDS
TTCAGATGGGGCGGACCTCC+CGG 0.437773 3.2:+11779950 None:intergenic
ATTCAAAGACTTAAAATGGC+TGG 0.439982 3.2:-11779278 MS.gene73037:CDS
ATTATTGGATTGAACTGTAA+AGG 0.444269 3.2:+11779845 None:intergenic
TTTCATTTGACAACTGAAGC+AGG 0.445135 3.2:-11779881 MS.gene73037:CDS
TCAGTAATCACTAAAAGTTT+CGG 0.445565 3.2:+11779518 None:intergenic
ACAAACTTTAAAGAAACGTC+CGG 0.459532 3.2:-11779969 MS.gene73037:CDS
GACGAAATGGTCTCCTCAGC+TGG 0.463985 3.2:-11779719 MS.gene73037:CDS
TCAAGCAATTATTGAATCCA+TGG 0.476530 3.2:-11780059 MS.gene73037:CDS
TCATGAAAAGAAAGAAGTAT+TGG 0.489286 3.2:-11779915 MS.gene73037:CDS
TGTGCAAAATGTGTTGCATC+TGG 0.490537 3.2:-11780328 MS.gene73037:CDS
AGAGGTGATAATGCTGAATC+GGG 0.492776 3.2:+11779599 None:intergenic
TTAGGTGCTTCACCTAAGAT+GGG 0.494167 3.2:-11779572 MS.gene73037:CDS
TGAATCCATGGAATGTGAAA+AGG 0.494601 3.2:-11780047 MS.gene73037:CDS
GAAAACTTGCCTGTCAAGAC+AGG 0.495316 3.2:-11779797 MS.gene73037:CDS
GAACAGGAATCAAATCTGAA+TGG 0.501626 3.2:-11779497 MS.gene73037:CDS
ATTTCATCACCTCATGGTAA+TGG 0.506040 3.2:-11780262 MS.gene73037:CDS
TGGTAATGGTGTACAAAGAA+TGG 0.507522 3.2:-11780248 MS.gene73037:CDS
TTGAGAGCTTTGTATACGCC+AGG 0.508327 3.2:+11780178 None:intergenic
CATTAGGTTCGCCATATCAC+TGG 0.511134 3.2:-11780408 MS.gene73037:CDS
ACAGCGTCTCCTGTCTTGAC+AGG 0.513933 3.2:+11779788 None:intergenic
ATAAGATTTATCCATTGAGC+TGG 0.514277 3.2:+11779992 None:intergenic
ACTTATTTCAGTGAAGCACT+TGG 0.520928 3.2:-11780223 MS.gene73037:CDS
ATTGTTCTGAACCAGCTCAA+TGG 0.522193 3.2:-11780003 MS.gene73037:CDS
AGGTACCTTTGAGTTACAAT+GGG 0.540375 3.2:-11779247 MS.gene73037:CDS
TTGTGAGGGAGTCGATAGAA+AGG 0.541472 3.2:-11779327 MS.gene73037:CDS
AAGGTACCTTTGAGTTACAA+TGG 0.544427 3.2:-11779248 MS.gene73037:CDS
TCTCAGATTTCATCACCTCA+TGG 0.558265 3.2:-11780268 MS.gene73037:CDS
TTCATTTGACAACTGAAGCA+GGG 0.559175 3.2:-11779880 MS.gene73037:CDS
GAGCAGCGCACATGGGTCAG+AGG 0.566671 3.2:-11779673 MS.gene73037:CDS
TACCTTTGAGTTACAATGGG+AGG 0.570596 3.2:-11779244 MS.gene73037:CDS
GGCATGAGAAGCTCGAGCAA+TGG 0.571455 3.2:-11779301 MS.gene73037:CDS
GTTCGCCATATCACTGGCTG+AGG 0.574878 3.2:-11780402 MS.gene73037:CDS
AAGAACATCATTACTTGTGA+GGG 0.575874 3.2:-11779341 MS.gene73037:CDS
ATCCTCCCATTGTAACTCAA+AGG 0.576632 3.2:+11779242 None:intergenic
TATGCAGAGAGCAGCGCACA+TGG 0.577233 3.2:-11779681 MS.gene73037:CDS
AAAGAACATCATTACTTGTG+AGG 0.578365 3.2:-11779342 MS.gene73037:CDS
TAAAATGGCTGGATTTGTGA+AGG 0.583083 3.2:-11779267 MS.gene73037:CDS
GATAGATGTCGCACCAGCTG+AGG 0.596102 3.2:+11779706 None:intergenic
TAGGTGCTTCACCTAAGATG+GGG 0.607732 3.2:-11779571 MS.gene73037:CDS
ATTGAGCTGGTTCAGAACAA+TGG 0.609357 3.2:+11780005 None:intergenic
CCATTTCGTCATCAGTGGCA+AGG 0.614165 3.2:+11779732 None:intergenic
AAGATAGTTAAACATTTACC+TGG 0.616797 3.2:-11780196 MS.gene73037:CDS
GAATTGAGATATGACTCTCA+TGG 0.618687 3.2:-11780379 MS.gene73037:CDS
CAAACTTTAAAGAAACGTCC+GGG 0.635686 3.2:-11779968 MS.gene73037:CDS
GGAGACCATTTCGTCATCAG+TGG 0.638809 3.2:+11779727 None:intergenic
ATGCAGAGAGCAGCGCACAT+GGG 0.647261 3.2:-11779680 MS.gene73037:CDS
GTCAGAGGACTTTCGCAGAG+TGG 0.652841 3.2:-11779658 MS.gene73037:CDS
TTCGCCATATCACTGGCTGA+GGG 0.658373 3.2:-11780401 MS.gene73037:CDS
AGGGAGTCGATAGAAAGGAA+AGG 0.670114 3.2:-11779322 MS.gene73037:CDS
CTTTGTACACCATTACCATG+AGG 0.671867 3.2:+11780253 None:intergenic
ACTTTAAAGAAACGTCCGGG+AGG 0.713179 3.2:-11779965 MS.gene73037:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGATAGTTAAACATTTACC+TGG - chr3.2:11779349-11779368 MS.gene73037:CDS 25.0%
! AGCATAAAAAATGCTGATAT+TGG - chr3.2:11779241-11779260 MS.gene73037:CDS 25.0%
! AGGTATGAAAACTTCAAAAA+AGG + chr3.2:11779457-11779476 None:intergenic 25.0%
! ATGATTGTTTACTTGTTTGT+TGG - chr3.2:11780382-11780401 MS.gene73037:CDS 25.0%
! ATGGATTCAAAGACTTAAAA+TGG - chr3.2:11780263-11780282 MS.gene73037:CDS 25.0%
! ATTATTGGATTGAACTGTAA+AGG + chr3.2:11779703-11779722 None:intergenic 25.0%
! TCAGTAATCACTAAAAGTTT+CGG + chr3.2:11780030-11780049 None:intergenic 25.0%
! TCTGAATGGATGTAATTTAA+TGG - chr3.2:11780062-11780081 MS.gene73037:CDS 25.0%
!! AATTCCTGTAATTTTCAGAT+GGG + chr3.2:11779611-11779630 None:intergenic 25.0%
!! TCATGAAAAGAAAGAAGTAT+TGG - chr3.2:11779630-11779649 MS.gene73037:CDS 25.0%
!!! CATAGAAGTATTTTTGAACA+AGG + chr3.2:11779426-11779445 None:intergenic 25.0%
!!! TCTTCAAGTTTGCTAATTAT+TGG + chr3.2:11779718-11779737 None:intergenic 25.0%
AAAGAACATCATTACTTGTG+AGG - chr3.2:11780203-11780222 MS.gene73037:CDS 30.0%
AAGAACATCATTACTTGTGA+GGG - chr3.2:11780204-11780223 MS.gene73037:CDS 30.0%
ATAAGATTTATCCATTGAGC+TGG + chr3.2:11779556-11779575 None:intergenic 30.0%
ATTCAAAGACTTAAAATGGC+TGG - chr3.2:11780267-11780286 MS.gene73037:CDS 30.0%
TCAAGCAATTATTGAATCCA+TGG - chr3.2:11779486-11779505 MS.gene73037:CDS 30.0%
! ACAAACTTTAAAGAAACGTC+CGG - chr3.2:11779576-11779595 MS.gene73037:CDS 30.0%
! ACTTTTAGTGATTACTGAAC+AGG - chr3.2:11780032-11780051 MS.gene73037:CDS 30.0%
! ATTCCTGTAATTTTCAGATG+GGG + chr3.2:11779610-11779629 None:intergenic 30.0%
! ATTTTGCACACTCAATAAGA+GGG + chr3.2:11779207-11779226 None:intergenic 30.0%
! GAATTCCTGTAATTTTCAGA+TGG + chr3.2:11779612-11779631 None:intergenic 30.0%
! TGAAGACAATGATATTTTCG+AGG + chr3.2:11779395-11779414 None:intergenic 30.0%
!! TAATTGCTTGATTTGTGATC+AGG + chr3.2:11779477-11779496 None:intergenic 30.0%
!!! GCATTATCACCTCTTTTTTT+AGG - chr3.2:11779955-11779974 MS.gene73037:CDS 30.0%
ATTTCATCACCTCATGGTAA+TGG - chr3.2:11779283-11779302 MS.gene73037:CDS 35.0%
GAACAGGAATCAAATCTGAA+TGG - chr3.2:11780048-11780067 MS.gene73037:CDS 35.0%
GAATTGAGATATGACTCTCA+TGG - chr3.2:11779166-11779185 MS.gene73037:CDS 35.0%
TAAAATGGCTGGATTTGTGA+AGG - chr3.2:11780278-11780297 MS.gene73037:CDS 35.0%
TGAATCCATGGAATGTGAAA+AGG - chr3.2:11779498-11779517 MS.gene73037:CDS 35.0%
TTAAGAAAGATCCCCATCTT+AGG + chr3.2:11779988-11780007 None:intergenic 35.0%
TTCATTTGACAACTGAAGCA+GGG - chr3.2:11779665-11779684 MS.gene73037:CDS 35.0%
TTTCATTTGACAACTGAAGC+AGG - chr3.2:11779664-11779683 MS.gene73037:CDS 35.0%
! AAGAGGTGATAATGCTGAAT+CGG + chr3.2:11779950-11779969 None:intergenic 35.0%
! AAGGTACCTTTGAGTTACAA+TGG - chr3.2:11780297-11780316 MS.gene73037:CDS 35.0%
! ACTTATTTCAGTGAAGCACT+TGG - chr3.2:11779322-11779341 MS.gene73037:CDS 35.0%
! AGGTACCTTTGAGTTACAAT+GGG - chr3.2:11780298-11780317 MS.gene73037:CDS 35.0%
! CAAACTTTAAAGAAACGTCC+GGG - chr3.2:11779577-11779596 MS.gene73037:CDS 35.0%
! CATTTTGCACACTCAATAAG+AGG + chr3.2:11779208-11779227 None:intergenic 35.0%
!! GATCGAGCATTGTACTTTTA+CGG - chr3.2:11780093-11780112 MS.gene73037:CDS 35.0%
!! TGGTAATGGTGTACAAAGAA+TGG - chr3.2:11779297-11779316 MS.gene73037:CDS 35.0%
!!! CAGACCACTTTTTTCTGTAT+CGG - chr3.2:11780410-11780429 MS.gene73037:CDS 35.0%
ATCCTCCCATTGTAACTCAA+AGG + chr3.2:11780306-11780325 None:intergenic 40.0%
CAACTCAGCTGTTATGCATT+AGG - chr3.2:11779121-11779140 MS.gene73037:CDS 40.0%
CACTCAATAAGAGGGATCAT+TGG + chr3.2:11779199-11779218 None:intergenic 40.0%
CTTTGTACACCATTACCATG+AGG + chr3.2:11779295-11779314 None:intergenic 40.0%
TCTCAGATTTCATCACCTCA+TGG - chr3.2:11779277-11779296 MS.gene73037:CDS 40.0%
TGTGCAAAATGTGTTGCATC+TGG - chr3.2:11779217-11779236 MS.gene73037:CDS 40.0%
TTAGGTGCTTCACCTAAGAT+GGG - chr3.2:11779973-11779992 MS.gene73037:CDS 40.0%
TTTAGGTGCTTCACCTAAGA+TGG - chr3.2:11779972-11779991 MS.gene73037:CDS 40.0%
! AACGACCTTTTCACATTCCA+TGG + chr3.2:11779506-11779525 None:intergenic 40.0%
! AGAGGTGATAATGCTGAATC+GGG + chr3.2:11779949-11779968 None:intergenic 40.0%
! ATTGAGCTGGTTCAGAACAA+TGG + chr3.2:11779543-11779562 None:intergenic 40.0%
! ATTGTTCTGAACCAGCTCAA+TGG - chr3.2:11779542-11779561 MS.gene73037:CDS 40.0%
! GGTGAAGCACCTAAAAAAAG+AGG + chr3.2:11779967-11779986 None:intergenic 40.0%
! TACCTTTGAGTTACAATGGG+AGG - chr3.2:11780301-11780320 MS.gene73037:CDS 40.0%
AATTCCCTCAGCCAGTGATA+TGG + chr3.2:11779151-11779170 None:intergenic 45.0%
AGGGAGTCGATAGAAAGGAA+AGG - chr3.2:11780223-11780242 MS.gene73037:CDS 45.0%
CAGGCCGATACAGAAAAAAG+TGG + chr3.2:11780417-11780436 None:intergenic 45.0%
CATTAGGTTCGCCATATCAC+TGG - chr3.2:11779137-11779156 MS.gene73037:CDS 45.0%
GAAAACTTGCCTGTCAAGAC+AGG - chr3.2:11779748-11779767 MS.gene73037:CDS 45.0%
TAGGTGCTTCACCTAAGATG+GGG - chr3.2:11779974-11779993 MS.gene73037:CDS 45.0%
TTGTGAGGGAGTCGATAGAA+AGG - chr3.2:11780218-11780237 MS.gene73037:CDS 45.0%
! AAACTCGAGAGCATGCTTCT+TGG - chr3.2:11780171-11780190 MS.gene73037:CDS 45.0%
! ACTTTAAAGAAACGTCCGGG+AGG - chr3.2:11779580-11779599 MS.gene73037:CDS 45.0%
! CCTGTAATTTTCAGATGGGG+CGG + chr3.2:11779607-11779626 None:intergenic 45.0%
! CTGTATCGGCCTGGAAATTT+AGG - chr3.2:11780424-11780443 MS.gene73037:CDS 45.0%
! GACAACTGAAGCAGGGATTT+TGG - chr3.2:11779672-11779691 MS.gene73037:CDS 45.0%
! TTGAGAGCTTTGTATACGCC+AGG + chr3.2:11779370-11779389 None:intergenic 45.0%
!!! CACTTTTTTCTGTATCGGCC+TGG - chr3.2:11780415-11780434 MS.gene73037:CDS 45.0%
!!! CGGTTCACTTTTTGACTGCT+TGG - chr3.2:11780113-11780132 MS.gene73037:CDS 45.0%
CCATTTCGTCATCAGTGGCA+AGG + chr3.2:11779816-11779835 None:intergenic 50.0%
CCGCCCCATCTGAAAATTAC+AGG - chr3.2:11779604-11779623 MS.gene73037:CDS 50.0%
GGAGACCATTTCGTCATCAG+TGG + chr3.2:11779821-11779840 None:intergenic 50.0%
! CCTTGCCACTGATGACGAAA+TGG - chr3.2:11779813-11779832 MS.gene73037:CDS 50.0%
! TTCGCCATATCACTGGCTGA+GGG - chr3.2:11779144-11779163 MS.gene73037:CDS 50.0%
ACAGCGTCTCCTGTCTTGAC+AGG + chr3.2:11779760-11779779 None:intergenic 55.0%
ATGCAGAGAGCAGCGCACAT+GGG - chr3.2:11779865-11779884 MS.gene73037:CDS 55.0%
GACGAAATGGTCTCCTCAGC+TGG - chr3.2:11779826-11779845 MS.gene73037:CDS 55.0%
GATAGATGTCGCACCAGCTG+AGG + chr3.2:11779842-11779861 None:intergenic 55.0%
GGCATGAGAAGCTCGAGCAA+TGG - chr3.2:11780244-11780263 MS.gene73037:CDS 55.0%
GTCAGAGGACTTTCGCAGAG+TGG - chr3.2:11779887-11779906 MS.gene73037:CDS 55.0%
TATGCAGAGAGCAGCGCACA+TGG - chr3.2:11779864-11779883 MS.gene73037:CDS 55.0%
! GTTCGCCATATCACTGGCTG+AGG - chr3.2:11779143-11779162 MS.gene73037:CDS 55.0%
GAGCAGCGCACATGGGTCAG+AGG - chr3.2:11779872-11779891 MS.gene73037:CDS 65.0%
TTCAGATGGGGCGGACCTCC+CGG + chr3.2:11779598-11779617 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 11779118 11780449 11779118 ID=MS.gene73037
chr3.2 mRNA 11779118 11780449 11779118 ID=MS.gene73037.t1;Parent=MS.gene73037
chr3.2 exon 11779118 11780449 11779118 ID=MS.gene73037.t1.exon1;Parent=MS.gene73037.t1
chr3.2 CDS 11779118 11780449 11779118 ID=cds.MS.gene73037.t1;Parent=MS.gene73037.t1
Gene Sequence

>MS.gene73037

ATGCAACTCAGCTGTTATGCATTAGGTTCGCCATATCACTGGCTGAGGGAATTGAGATATGACTCTCATGGCTCAAATCCAATGATCCCTCTTATTGAGTGTGCAAAATGTGTTGCATCTGGAAGCATAAAAAATGCTGATATTGGACTTGAGTATATTTCTCAGATTTCATCACCTCATGGTAATGGTGTACAAAGAATGGTCACTTATTTCAGTGAAGCACTTGGATACAAGATAGTTAAACATTTACCTGGCGTATACAAAGCTCTCAATTCCTCGAAAATATCATTGTCTTCAGACGACATCCTTGTTCAAAAATACTTCTATGATCTGTGTCCTTTTTTGAAGTTTTCATACCTGATCACAAATCAAGCAATTATTGAATCCATGGAATGTGAAAAGGTCGTTCATATTATTGATCTCCATTGTTCTGAACCAGCTCAATGGATAAATCTTATACAAACTTTAAAGAAACGTCCGGGAGGTCCGCCCCATCTGAAAATTACAGGAATTCATGAAAAGAAAGAAGTATTGGAGCAAATGAGCTTTCATTTGACAACTGAAGCAGGGATTTTGGATTTTCCTTTACAGTTCAATCCAATAATTAGCAAACTTGAAGATGTCGATTTCGAAAACTTGCCTGTCAAGACAGGAGACGCTGTCGCAATTTCTTCTGTTCTTCAGCTGCATTCTCTCCTTGCCACTGATGACGAAATGGTCTCCTCAGCTGGTGCGACATCTATCAATATGCAGAGAGCAGCGCACATGGGTCAGAGGACTTTCGCAGAGTGGCTAGAGAGAGACATGATCAATGCATATATCTTGAGTCCCGATTCAGCATTATCACCTCTTTTTTTAGGTGCTTCACCTAAGATGGGGATCTTTCTTAACGCTATGCGAAAACTGCAACCGAAACTTTTAGTGATTACTGAACAGGAATCAAATCTGAATGGATGTAATTTAATGGAGAGAATCGATCGAGCATTGTACTTTTACGGTTCACTTTTTGACTGCTTGGAATCTACTGTTACGAGAACATCAGTCGAGAGACAAAAACTCGAGAGCATGCTTCTTGGAGAGCAAATAAAGAACATCATTACTTGTGAGGGAGTCGATAGAAAGGAAAGGCATGAGAAGCTCGAGCAATGGATTCAAAGACTTAAAATGGCTGGATTTGTGAAGGTACCTTTGAGTTACAATGGGAGGATAGAAGCGACAAATCTATTGCAACGATATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTACTTGTTTGTTGGAGTGACAGACCACTTTTTTCTGTATCGGCCTGGAAATTTAGGTGA
Protein sequence

>MS.gene73037.t1

MQLSCYALGSPYHWLRELRYDSHGSNPMIPLIECAKCVASGSIKNADIGLEYISQISSPHGNGVQRMVTYFSEALGYKIVKHLPGVYKALNSSKISLSSDDILVQKYFYDLCPFLKFSYLITNQAIIESMECEKVVHIIDLHCSEPAQWINLIQTLKKRPGGPPHLKITGIHEKKEVLEQMSFHLTTEAGILDFPLQFNPIISKLEDVDFENLPVKTGDAVAISSVLQLHSLLATDDEMVSSAGATSINMQRAAHMGQRTFAEWLERDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLQPKLLVITEQESNLNGCNLMERIDRALYFYGSLFDCLESTVTRTSVERQKLESMLLGEQIKNIITCEGVDRKERHEKLEQWIQRLKMAGFVKVPLSYNGRIEATNLLQRYSHKYKFKEENDCLLVCWSDRPLFSVSAWKFR