AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73201

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73201.t1 MTR_8g070075 88.351 764 82 2 1 763 1 758 0.0 1389
MS.gene73201.t1 MTR_8g070070 73.885 785 168 10 4 767 1 769 0.0 1127
MS.gene73201.t1 MTR_8g071030 64.706 765 212 9 14 767 32 749 0.0 960
MS.gene73201.t1 MTR_1g035420 67.653 473 149 3 295 766 189 658 0.0 679
MS.gene73201.t1 MTR_1g035400 60.645 465 180 3 295 758 106 568 0.0 589
MS.gene73201.t1 MTR_6g044690 56.383 470 182 8 295 755 109 564 0.0 533
MS.gene73201.t1 MTR_0376s0030 51.267 513 223 8 267 766 79 577 6.36e-178 522
MS.gene73201.t1 MTR_6g043960 47.500 520 223 10 248 755 1 482 6.90e-156 462
MS.gene73201.t1 MTR_2g054460 43.463 566 202 12 199 755 8 464 6.24e-138 415
MS.gene73201.t1 MTR_5g013420 40.476 462 248 9 298 753 618 1058 3.23e-104 345
MS.gene73201.t1 MTR_5g013420 40.476 462 248 9 298 753 618 1058 3.55e-104 344
MS.gene73201.t1 MTR_7g088370 40.546 476 247 13 290 755 231 680 1.39e-103 334
MS.gene73201.t1 MTR_3g011440 39.703 471 262 11 295 754 174 633 8.79e-102 328
MS.gene73201.t1 MTR_4g010830 40.393 458 253 8 298 753 510 949 1.81e-100 332
MS.gene73201.t1 MTR_8g042750 39.246 451 252 11 315 755 220 658 4.39e-97 316
MS.gene73201.t1 MTR_4g010550 37.473 459 235 11 298 753 24 433 2.73e-86 281
MS.gene73201.t1 MTR_7g084090 37.166 487 274 15 289 754 252 727 1.05e-85 288
MS.gene73201.t1 MTR_6g061270 37.131 474 266 16 301 754 203 664 1.46e-83 280
MS.gene73201.t1 MTR_6g061200 36.052 466 253 16 301 754 203 635 3.19e-76 259
MS.gene73201.t1 MTR_7g084090 39.295 369 202 12 289 644 252 611 1.21e-68 239
MS.gene73201.t1 MTR_7g445530 32.143 476 230 17 298 753 110 512 1.27e-56 202
MS.gene73201.t1 MTR_7g445710 32.353 476 229 17 298 753 110 512 1.29e-56 203
MS.gene73201.t1 MTR_1g048950 33.333 474 267 13 295 753 68 507 2.52e-55 200
MS.gene73201.t1 MTR_7g450730 30.952 462 219 14 298 753 107 474 2.37e-53 193
MS.gene73201.t1 MTR_7g052480 33.117 308 192 8 457 754 223 526 8.38e-43 164
MS.gene73201.t1 MTR_7g445600 34.000 150 62 2 604 753 243 355 4.76e-21 95.9
MS.gene73201.t1 MTR_7g445600 41.860 129 61 5 298 426 106 220 3.96e-15 78.2
MS.gene73201.t1 MTR_8g078505 25.826 333 194 10 452 753 205 515 2.23e-20 95.9
MS.gene73201.t1 MTR_6g044000 69.811 53 16 0 703 755 117 169 4.92e-20 88.6
MS.gene73201.t1 MTR_6g044000 36.290 124 71 2 248 367 1 120 1.70e-16 78.2
MS.gene73201.t1 MTR_8g078490 31.217 189 110 4 570 753 1056 1229 2.80e-19 94.0
MS.gene73201.t1 MTR_1g069570 25.733 307 156 12 505 755 430 720 5.90e-19 92.4
MS.gene73201.t1 MTR_5g018850 28.387 310 167 13 497 767 1203 1496 2.05e-18 91.3
MS.gene73201.t1 MTR_4g132610 30.270 185 115 4 571 753 851 1023 3.63e-18 90.1
MS.gene73201.t1 MTR_1g080340 24.756 307 160 11 505 755 269 560 8.28e-17 85.1
MS.gene73201.t1 MTR_5g098680 34.810 158 89 4 323 475 267 415 1.29e-14 78.2
MS.gene73201.t1 MTR_7g445810 39.375 160 78 8 298 454 123 266 3.31e-14 73.9
MS.gene73201.t1 MTR_8g102580 34.177 158 90 4 323 475 261 409 4.35e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73201.t1 AT4G13460 61.492 496 179 7 273 766 164 649 0.0 623
MS.gene73201.t1 AT4G13460 61.492 496 179 7 273 766 164 649 0.0 623
MS.gene73201.t1 AT2G33290 59.252 481 186 5 287 766 179 650 0.0 595
MS.gene73201.t1 AT2G33290 59.252 481 186 5 287 766 179 650 0.0 595
MS.gene73201.t1 AT2G33290 59.252 481 186 5 287 766 179 650 0.0 595
MS.gene73201.t1 AT2G33290 59.252 481 186 5 287 766 179 650 0.0 595
MS.gene73201.t1 AT2G35160 37.660 470 249 10 288 753 298 727 2.28e-90 300
MS.gene73201.t1 AT5G04940 39.262 461 233 14 315 755 207 640 3.82e-90 297
MS.gene73201.t1 AT5G04940 39.262 461 233 14 315 755 207 640 3.82e-90 297
MS.gene73201.t1 AT1G73100 37.391 460 245 12 315 755 204 639 4.01e-90 297
MS.gene73201.t1 AT2G35160 37.660 470 249 10 288 753 334 763 6.04e-90 300
MS.gene73201.t1 AT2G35160 37.660 470 249 10 288 753 334 763 6.04e-90 300
MS.gene73201.t1 AT2G35160 37.660 470 249 10 288 753 334 763 6.04e-90 300
MS.gene73201.t1 AT2G35160 37.660 470 249 10 288 753 334 763 6.04e-90 300
MS.gene73201.t1 AT2G22740 37.053 475 276 8 288 753 299 759 2.32e-88 295
MS.gene73201.t1 AT2G22740 37.053 475 276 8 288 753 299 759 2.32e-88 295
MS.gene73201.t1 AT5G13960 36.087 460 264 14 315 754 11 460 2.24e-81 269
MS.gene73201.t1 AT5G13960 35.870 460 265 14 315 754 145 594 4.29e-81 272
MS.gene73201.t1 AT2G24740 36.784 454 237 17 316 755 307 724 7.91e-69 241
MS.gene73201.t1 AT1G17770 33.406 461 265 15 315 755 223 661 2.31e-68 239
MS.gene73201.t1 AT5G47150 42.424 165 86 4 311 475 169 324 6.73e-27 112
MS.gene73201.t1 AT5G47160 40.588 170 91 5 303 471 247 407 1.44e-23 104
MS.gene73201.t1 AT5G47160 40.588 170 91 5 303 471 247 407 1.44e-23 104
MS.gene73201.t1 AT5G47160 40.588 170 91 5 303 471 247 407 1.44e-23 104
MS.gene73201.t1 AT2G23740 32.308 195 109 6 572 758 1184 1363 5.15e-22 102
MS.gene73201.t1 AT2G23740 32.308 195 109 6 572 758 1184 1363 5.15e-22 102
MS.gene73201.t1 AT2G23740 32.308 195 109 6 572 758 1184 1363 5.15e-22 102
MS.gene73201.t1 AT2G23740 32.308 195 109 6 572 758 1177 1356 5.50e-22 102
MS.gene73201.t1 AT2G05900 36.364 198 115 7 338 533 3 191 3.89e-21 95.5
MS.gene73201.t1 AT3G03750 28.521 284 145 12 503 754 66 323 2.29e-18 87.8
MS.gene73201.t1 AT2G23740 32.877 146 78 5 572 712 1184 1314 3.12e-16 84.0
MS.gene73201.t1 AT2G23740 32.877 146 78 5 572 712 1184 1314 3.12e-16 84.0
MS.gene73201.t1 AT1G57820 34.591 159 89 5 323 475 277 426 3.33e-14 77.0
MS.gene73201.t1 AT1G57820 34.591 159 89 5 323 475 277 426 3.33e-14 77.0
MS.gene73201.t1 AT1G57820 33.974 156 91 5 323 475 277 423 3.79e-13 73.6
MS.gene73201.t1 AT1G66040 32.075 159 93 4 323 475 262 411 3.90e-12 70.1
MS.gene73201.t1 AT1G66050 32.075 159 93 4 323 475 262 411 4.11e-12 70.1
MS.gene73201.t1 AT5G39550 33.333 159 91 5 323 475 262 411 6.28e-12 69.7

Find 210 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAGGGAGATTAAGAAAAT+TGG 0.151275 1.1:-37608973 MS.gene73201:CDS
TCCTCAAAAGGTTTAGGTTT+TGG 0.199470 1.1:+37610275 None:intergenic
AAGCGGTGCTCCGGTGTAAA+TGG 0.221260 1.1:+37610313 None:intergenic
TGATTCTTGTTTCTTTGAAA+TGG 0.265370 1.1:+37609938 None:intergenic
TGTTTCTGAAGTTGCGATTA+TGG 0.271621 1.1:-37609664 MS.gene73201:CDS
TACGTCTTTGGATCTTATTC+AGG 0.280560 1.1:-37608554 MS.gene73201:CDS
GTTAATGATAAATGATCTAT+TGG 0.281493 1.1:+37610422 None:intergenic
AAGCAAACCCTGAAGATTAT+AGG 0.291078 1.1:+37608711 None:intergenic
AAGAAATCCTCAAAAGGTTT+AGG 0.291529 1.1:+37610269 None:intergenic
AATTATTGAGGAGAAGAAAT+TGG 0.298748 1.1:-37609757 MS.gene73201:CDS
AGAGTTTCCCTATAATCTTC+AGG 0.299770 1.1:-37608719 MS.gene73201:CDS
GGTAGCTATGGTTAAGAAAA+AGG 0.309499 1.1:-37609907 MS.gene73201:CDS
TATGGTTGCATCGCGATAAA+AGG 0.310327 1.1:-37609503 MS.gene73201:CDS
CATCTATCTATAAACCGTTT+TGG 0.314837 1.1:+37608442 None:intergenic
AGCTTGCCCGCCCACTCGTC+AGG 0.315436 1.1:+37608163 None:intergenic
TGCAACACGATTCCGACAAT+TGG 0.331483 1.1:+37608636 None:intergenic
CAGGTCTGCGCAAACTGGTT+GGG 0.335408 1.1:-37608581 MS.gene73201:CDS
GGATTGAGGGTTGACATGTT+AGG 0.336861 1.1:+37610347 None:intergenic
ATACATTTGGACTCCAACTA+TGG 0.339033 1.1:+37608296 None:intergenic
TTGGGAGGACAAGAGCAAAA+AGG 0.339571 1.1:+37608655 None:intergenic
TGAGAAGGGGAAGTAATAGA+AGG 0.340316 1.1:+37610389 None:intergenic
GGTGTAAATGGGAGTGATTT+GGG 0.344967 1.1:+37610325 None:intergenic
AGAGGCAGCAACAGGGGTGG+AGG 0.348478 1.1:-37609607 MS.gene73201:CDS
CGGTGTAAATGGGAGTGATT+TGG 0.348980 1.1:+37610324 None:intergenic
ATGTGGTTATGAGGATGATA+TGG 0.351380 1.1:-37609319 MS.gene73201:CDS
TATATAGGATTACTGATTGC+TGG 0.364491 1.1:-37609089 MS.gene73201:CDS
ACCTGATATAGATTATTCTA+TGG 0.365689 1.1:-37608356 MS.gene73201:CDS
AGCAAACCCTGAAGATTATA+GGG 0.370075 1.1:+37608712 None:intergenic
CAAAACGGTTTATAGATAGA+TGG 0.370356 1.1:-37608441 MS.gene73201:CDS
ACAAATTGAACAAATACATT+TGG 0.370419 1.1:+37608283 None:intergenic
CCCGGTATACTCGCAGATAA+AGG 0.370510 1.1:+37608525 None:intergenic
ATGTTTATGATGGATTATAT+AGG 0.373190 1.1:-37609104 MS.gene73201:CDS
TCCATAGAATAATCTATATC+AGG 0.373576 1.1:+37608355 None:intergenic
GGCAGCAACAGGGGTGGAGG+GGG 0.379343 1.1:-37609604 MS.gene73201:CDS
GATTGAGGGTTGACATGTTA+GGG 0.381292 1.1:+37610348 None:intergenic
ATGGTGGAATTATGTGTAAT+TGG 0.382160 1.1:-37609432 MS.gene73201:CDS
TATAGATAGATGGGCAGAAT+GGG 0.382516 1.1:-37608431 MS.gene73201:CDS
AGGCAGCAACAGGGGTGGAG+GGG 0.384511 1.1:-37609605 MS.gene73201:CDS
ATGTCATTAAATAGCCTAAC+AGG 0.384989 1.1:+37608889 None:intergenic
GATTCTTGTTTCTTTGAAAT+GGG 0.385503 1.1:+37609939 None:intergenic
CTAGGGAGATTAAGAAAATT+GGG 0.390286 1.1:-37608972 MS.gene73201:CDS
TGGTTGGGGAGTTACGTCTT+TGG 0.391653 1.1:-37608566 MS.gene73201:CDS
AACATGGAAGAGGCAGCAAC+AGG 0.393510 1.1:-37609615 MS.gene73201:CDS
TGGGAGTGATTTGGGGATTG+AGG 0.396090 1.1:+37610333 None:intergenic
AGCATAGGTTGGAAGTGTTC+AGG 0.397659 1.1:-37608600 MS.gene73201:CDS
ATCATAGTCGTGGTTTCATA+AGG 0.402492 1.1:-37609554 MS.gene73201:CDS
TCGGAATCGTGTTGCACAAA+AGG 0.405257 1.1:-37608629 MS.gene73201:CDS
GCTCTTGTCCTCCCAATTGT+CGG 0.405346 1.1:-37608648 MS.gene73201:CDS
GCATTACGGGATCGAGATTA+GGG 0.408510 1.1:-37609178 MS.gene73201:CDS
GGGAGTGATTTGGGGATTGA+GGG 0.409415 1.1:+37610334 None:intergenic
GGTAAGGTTTATGTTTATGA+TGG 0.410667 1.1:-37609114 MS.gene73201:CDS
CGCGATGCAACCATAACTTT+CGG 0.415089 1.1:+37609511 None:intergenic
TCAACATTGCGAAATGTTGC+TGG 0.416135 1.1:-37608328 MS.gene73201:CDS
GCTTGTGAAAGGGAAGCCTT+TGG 0.419411 1.1:-37608692 MS.gene73201:CDS
AAAATGATAAAGGGATTTAT+CGG 0.421885 1.1:+37610097 None:intergenic
TGCATTACGGGATCGAGATT+AGG 0.423214 1.1:-37609179 MS.gene73201:CDS
GGCAGTGAAGAGATTGGTTG+AGG 0.423218 1.1:-37609715 MS.gene73201:CDS
TTATGAGGATGATATGGAAT+TGG 0.423427 1.1:-37609313 MS.gene73201:CDS
TAAATGATCTATTGGATTCA+TGG 0.427471 1.1:+37610430 None:intergenic
AGAGGGTGGAAACCTTGCTT+TGG 0.427528 1.1:-37609211 MS.gene73201:CDS
GGTGAGAAGAAGTTTGAGAA+GGG 0.429309 1.1:+37610375 None:intergenic
TGAAGCGGCAAAAGCATTGT+TGG 0.430143 1.1:+37610058 None:intergenic
GGGTTGACATGTTAGGGATT+TGG 0.431533 1.1:+37610354 None:intergenic
AATTGAGGGGCAAGCTAAGA+TGG 0.435322 1.1:-37609016 MS.gene73201:CDS
TATAAGTTATTGAGAATTGA+GGG 0.436671 1.1:-37609030 MS.gene73201:CDS
CGGAATCGTGTTGCACAAAA+GGG 0.437967 1.1:-37608628 MS.gene73201:CDS
GCCTTTATCTGCGAGTATAC+CGG 0.438710 1.1:-37608526 MS.gene73201:CDS
GATTGTTTCATGTGGTTATG+AGG 0.449177 1.1:-37609328 MS.gene73201:CDS
CCTTTATCTGCGAGTATACC+GGG 0.450373 1.1:-37608525 MS.gene73201:CDS
AGAGAACTCAGCATAGACTA+TGG 0.455539 1.1:-37608190 MS.gene73201:CDS
TTGGAGCGTAGTATGCATTA+CGG 0.455982 1.1:-37609192 MS.gene73201:CDS
GAGGCAGCAACAGGGGTGGA+GGG 0.460541 1.1:-37609606 MS.gene73201:CDS
TGGTTTGAAGAAGGGATGTC+TGG 0.461289 1.1:-37609069 MS.gene73201:CDS
TCAGGTATTAATTGATATGA+TGG 0.462483 1.1:+37608373 None:intergenic
GAGTTTCCCTATAATCTTCA+GGG 0.462595 1.1:-37608718 MS.gene73201:CDS
AAGTAATAGAAGGGGTTTCA+AGG 0.463004 1.1:+37610399 None:intergenic
ATTGGTTGAGGAGAAGATGT+TGG 0.463349 1.1:-37609703 MS.gene73201:CDS
TGAAGTTGCGATTATGGAGA+TGG 0.466700 1.1:-37609658 MS.gene73201:CDS
AATCAACCTCATTTCCCTCC+TGG 0.471602 1.1:-37610191 MS.gene73201:CDS
ACAATCACACTAGTAGCAAT+TGG 0.471909 1.1:+37609345 None:intergenic
ACTGATTGCTGGTTTGAAGA+AGG 0.473748 1.1:-37609078 MS.gene73201:CDS
CATCGCGATAAAAGGATAGT+TGG 0.475915 1.1:-37609495 MS.gene73201:CDS
AGAGGGAGAATGTTCCTGTT+AGG 0.476652 1.1:-37608903 MS.gene73201:CDS
AGAAGATGTTGGATGAGGAT+AGG 0.479328 1.1:-37609692 MS.gene73201:CDS
GAGAAGGGGAAGTAATAGAA+GGG 0.479390 1.1:+37610390 None:intergenic
TCAGGTCTGCGCAAACTGGT+TGG 0.479909 1.1:-37608582 MS.gene73201:CDS
AGTAGCAATTGGCTCGCCAT+TGG 0.481657 1.1:+37609356 None:intergenic
TAATGAAGGACCGAAAGTTA+TGG 0.481674 1.1:-37609521 MS.gene73201:CDS
CTTCAGGGTTTGCTTGTGAA+AGG 0.482699 1.1:-37608703 MS.gene73201:CDS
TCAGTCAATATTTCCGACCT+TGG 0.482765 1.1:-37610026 MS.gene73201:CDS
AGGTCTGCGCAAACTGGTTG+GGG 0.482929 1.1:-37608580 MS.gene73201:CDS
TGGAGCGTAGTATGCATTAC+GGG 0.484208 1.1:-37609191 MS.gene73201:CDS
CATCAGAGCGGGAAAGCTAC+TGG 0.485001 1.1:-37608799 MS.gene73201:CDS
GCAACACGATTCCGACAATT+GGG 0.485278 1.1:+37608637 None:intergenic
TGCGATTATGGAGATGGAGA+TGG 0.487265 1.1:-37609652 MS.gene73201:CDS
GTATAAGTTATTGAGAATTG+AGG 0.488542 1.1:-37609031 MS.gene73201:CDS
TCTTTGGATCTTATTCAGGC+TGG 0.491337 1.1:-37608550 MS.gene73201:CDS
GTGTTCAGGTCTGCGCAAAC+TGG 0.491340 1.1:-37608586 MS.gene73201:CDS
GGATGAGAAAAGAATTATTG+AGG 0.492648 1.1:-37609769 MS.gene73201:CDS
GGAGATTAAGAAAATTGGGT+TGG 0.494139 1.1:-37608968 MS.gene73201:CDS
TGTGGAGGCAGTGAAGAGAT+TGG 0.494725 1.1:-37609721 MS.gene73201:CDS
AATTCTTCTTTCTTCCTCCA+TGG 0.496188 1.1:+37609262 None:intergenic
AGCGGTGCTCCGGTGTAAAT+GGG 0.497581 1.1:+37610314 None:intergenic
ATCATGTTCGGCGGTAGCTA+TGG 0.497855 1.1:-37609919 MS.gene73201:CDS
AAACAACCTCATTTCCCTCA+TGG 0.500206 1.1:-37610227 MS.gene73201:CDS
AAAGAAACAAGAATCATGTT+CGG 0.500992 1.1:-37609931 MS.gene73201:CDS
GGATTTATCGGAAGTAGCAT+TGG 0.502335 1.1:+37610109 None:intergenic
TTCAGGGTTTGCTTGTGAAA+GGG 0.502624 1.1:-37608702 MS.gene73201:CDS
TATGGTTTGAAGCGGTGCTC+CGG 0.502918 1.1:+37610304 None:intergenic
CTTCTTTCTTCCTCCATGGC+CGG 0.504486 1.1:+37609266 None:intergenic
CTGATTGCTGGTTTGAAGAA+GGG 0.504895 1.1:-37609077 MS.gene73201:CDS
GGAAGATACTCATAATAAAG+AGG 0.506268 1.1:+37608850 None:intergenic
TGTGTGGAGGCTTGTACTGA+TGG 0.507598 1.1:-37608769 MS.gene73201:CDS
TAGATAGATGGGCAGAATGG+GGG 0.511424 1.1:-37608429 MS.gene73201:CDS
TGGTGAGAAGAAGTTTGAGA+AGG 0.516679 1.1:+37610374 None:intergenic
AGGATAGTTGGATCGATACC+TGG 0.518534 1.1:-37609483 MS.gene73201:CDS
GGCATCCCTGACGAGTGGGC+GGG 0.520972 1.1:-37608169 MS.gene73201:CDS
TTCGTGAGATGAAGTATGAA+GGG 0.522262 1.1:-37609152 MS.gene73201:CDS
ACTCGTTAATATATCCAAAA+CGG 0.524396 1.1:-37608456 MS.gene73201:CDS
GAGGATTTCTTCACCACCCA+AGG 0.525934 1.1:-37610257 MS.gene73201:CDS
TAGGGTTCTGATTTAGTCCA+AGG 0.527023 1.1:+37610009 None:intergenic
GCGATTATGGAGATGGAGAT+GGG 0.528244 1.1:-37609651 MS.gene73201:CDS
TCATAGTCGTGGTTTCATAA+GGG 0.531523 1.1:-37609553 MS.gene73201:CDS
ATGGAGATGGAGATGGGAGC+TGG 0.532864 1.1:-37609645 MS.gene73201:CDS
TTATAGATAGATGGGCAGAA+TGG 0.533260 1.1:-37608432 MS.gene73201:CDS
GTAATAATCAATACCGGCCA+TGG 0.534042 1.1:-37609279 MS.gene73201:CDS
GTGAGAAGAAGTTTGAGAAG+GGG 0.534971 1.1:+37610376 None:intergenic
AGATAGATGGGCAGAATGGG+GGG 0.535500 1.1:-37608428 MS.gene73201:CDS
AGTAATAGAAGGGGTTTCAA+GGG 0.536332 1.1:+37610400 None:intergenic
AAAACGGTTTATAGATAGAT+GGG 0.536629 1.1:-37608440 MS.gene73201:CDS
TCGATACCTGGAGTTTATGT+TGG 0.538082 1.1:-37609471 MS.gene73201:CDS
CTGGCTATATGAGCCATAGT+TGG 0.538666 1.1:-37608309 MS.gene73201:CDS
GGTTTGTGGTTCATCAGAGC+GGG 0.543952 1.1:-37608810 MS.gene73201:CDS
TTATGATTCGCTACGTGTGT+TGG 0.545706 1.1:-37609802 MS.gene73201:CDS
GTGGTGAAGAAATCCTCAAA+AGG 0.546407 1.1:+37610263 None:intergenic
AATTTGTGATCAGAAATTAG+AGG 0.546612 1.1:-37609229 MS.gene73201:CDS
GACTGAGTTCTCCATTGAAG+CGG 0.547564 1.1:+37610043 None:intergenic
AAAGGGGATCAAGCATAGGT+TGG 0.547811 1.1:-37608611 MS.gene73201:CDS
GATGATATGGAATTGGATGA+TGG 0.549294 1.1:-37609306 MS.gene73201:CDS
GGTGATGTAATAATCAATAC+CGG 0.550208 1.1:-37609285 MS.gene73201:CDS
ATTCGTGAGATGAAGTATGA+AGG 0.550982 1.1:-37609153 MS.gene73201:CDS
AGAAGGGGAAGTAATAGAAG+GGG 0.554124 1.1:+37610391 None:intergenic
CCGTCTCATGCTATATGCAA+TGG 0.560658 1.1:-37608230 MS.gene73201:CDS
TGTTGATATTTCACACAAGA+GGG 0.562610 1.1:-37608920 MS.gene73201:CDS
AGGCAAGTCAGATGCTTGTG+AGG 0.562686 1.1:-37609887 MS.gene73201:CDS
TGGTGATGAGAACATGGAAG+AGG 0.565897 1.1:-37609625 MS.gene73201:CDS
GGGTGCGTCTAGCTCTGGTA+AGG 0.568302 1.1:-37609130 MS.gene73201:CDS
TGGCATCCCTGACGAGTGGG+CGG 0.569853 1.1:-37608170 MS.gene73201:CDS
CTGTTGATATTTCACACAAG+AGG 0.573952 1.1:-37608921 MS.gene73201:CDS
CATTGCATATAGCATGAGAC+GGG 0.574005 1.1:+37608231 None:intergenic
ATAGATAGATGGGCAGAATG+GGG 0.576328 1.1:-37608430 MS.gene73201:CDS
AAGGGCTGCGAGGTTAATGA+AGG 0.576510 1.1:-37609535 MS.gene73201:CDS
GGTTTCAGATCTGAGTATGA+AGG 0.579176 1.1:-37609865 MS.gene73201:CDS
ATTTGTGATCAGAAATTAGA+GGG 0.579266 1.1:-37609228 MS.gene73201:CDS
GCTTGCCCGCCCACTCGTCA+GGG 0.582498 1.1:+37608164 None:intergenic
GCATACTACGCTCCAAAGCA+AGG 0.582921 1.1:+37609199 None:intergenic
TGCTGAGTTCTCTCAATGGA+GGG 0.584149 1.1:+37608200 None:intergenic
GTGTAAATGGGAGTGATTTG+GGG 0.585866 1.1:+37610326 None:intergenic
TTCCCTTGTTAAAATTACCC+CGG 0.586982 1.1:+37608507 None:intergenic
ATTGAGGGGCAAGCTAAGAT+GGG 0.587188 1.1:-37609015 MS.gene73201:CDS
ACATCGCCAACATAAACTCC+AGG 0.587833 1.1:+37609465 None:intergenic
CCATTGCATATAGCATGAGA+CGG 0.588288 1.1:+37608230 None:intergenic
TCATATCCAGGAGGGAAATG+AGG 0.588395 1.1:+37610185 None:intergenic
GGGACGAGTATGGTTTGAAG+CGG 0.590830 1.1:+37610296 None:intergenic
GGAAGAGGCAGCAACAGGGG+TGG 0.591867 1.1:-37609610 MS.gene73201:CDS
ACTAAATCAGAACCCTAACA+TGG 0.593938 1.1:-37610003 MS.gene73201:CDS
CTCTGATGAACCACAAACCA+CGG 0.596324 1.1:+37608814 None:intergenic
ACTAGTGTGATTGTTTCATG+TGG 0.597219 1.1:-37609336 MS.gene73201:CDS
TCATATCCATGAGGGAAATG+AGG 0.597266 1.1:+37610221 None:intergenic
AGCTACTGGTTGTGAATGTG+TGG 0.598292 1.1:-37608785 MS.gene73201:CDS
GGCAAGTCAGATGCTTGTGA+GGG 0.598305 1.1:-37609886 MS.gene73201:CDS
CATGGAAGAGGCAGCAACAG+GGG 0.601065 1.1:-37609613 MS.gene73201:CDS
TCAACAGAAAGACAATACAT+AGG 0.601273 1.1:+37608937 None:intergenic
TGTTGTAGTACTCAGTGTAG+AGG 0.601469 1.1:+37610144 None:intergenic
ATGCTGAGTTCTCTCAATGG+AGG 0.603033 1.1:+37608199 None:intergenic
GGGAGCTGGTGATGAGAACA+TGG 0.604987 1.1:-37609631 MS.gene73201:CDS
TGAGGAGAAGATGTTGGATG+AGG 0.605221 1.1:-37609697 MS.gene73201:CDS
TCTATGCTGAGTTCTCTCAA+TGG 0.607917 1.1:+37608196 None:intergenic
TTGCATATGCAGATACAAGA+TGG 0.611206 1.1:-37609408 MS.gene73201:CDS
AGATGCATCGCAACATGATG+AGG 0.612112 1.1:-37609839 MS.gene73201:CDS
GAAGTAGCATTGGAAGATTG+TGG 0.615801 1.1:+37610119 None:intergenic
GTTCTGATTTAGTCCAAGGT+CGG 0.618069 1.1:+37610013 None:intergenic
CTATGGCATCCCTGACGAGT+GGG 0.626017 1.1:-37608173 MS.gene73201:CDS
GCAACATGATGAGGAGAACA+AGG 0.627298 1.1:-37609830 MS.gene73201:CDS
ACGTGTGTTGGAAAGTATTG+AGG 0.633669 1.1:-37609790 MS.gene73201:CDS
ACATGGAAGAGGCAGCAACA+GGG 0.638672 1.1:-37609614 MS.gene73201:CDS
TGTGATCAGAAATTAGAGGG+TGG 0.640509 1.1:-37609225 MS.gene73201:CDS
AGACATCATAATCATAGTCG+TGG 0.641416 1.1:-37609564 MS.gene73201:CDS
CACAAAAGGGGATCAAGCAT+AGG 0.642092 1.1:-37608615 MS.gene73201:CDS
TACTGGTTGTGAATGTGTGG+AGG 0.644458 1.1:-37608782 MS.gene73201:CDS
ATAAGTTATTGAGAATTGAG+GGG 0.645000 1.1:-37609029 MS.gene73201:CDS
CAAATCACTCCCATTTACAC+CGG 0.645622 1.1:-37610323 MS.gene73201:CDS
CTAAATCAGAACCCTAACAT+GGG 0.650681 1.1:-37610002 MS.gene73201:CDS
ACTATGGCATCCCTGACGAG+TGG 0.651275 1.1:-37608174 MS.gene73201:CDS
ACACGATTCCGACAATTGGG+AGG 0.651351 1.1:+37608640 None:intergenic
TCGTGAGATGAAGTATGAAG+GGG 0.657054 1.1:-37609151 MS.gene73201:CDS
TGGTTTGTGGTTCATCAGAG+CGG 0.658060 1.1:-37608811 MS.gene73201:CDS
CCTAAAAGTAGGTCTTCCAA+TGG 0.661785 1.1:-37609372 MS.gene73201:CDS
TAAATCAGAACCCTAACATG+GGG 0.662393 1.1:-37610001 MS.gene73201:CDS
GGAATCGTGTTGCACAAAAG+GGG 0.665750 1.1:-37608627 MS.gene73201:CDS
TGTTGTGTTCATATCCATGA+GGG 0.680837 1.1:+37610213 None:intergenic
GAAACAAGAATCATGTTCGG+CGG 0.682834 1.1:-37609928 MS.gene73201:CDS
CGTGAGATGAAGTATGAAGG+GGG 0.704890 1.1:-37609150 MS.gene73201:CDS
CTTTATCTGCGAGTATACCG+GGG 0.705407 1.1:-37608524 MS.gene73201:CDS
ATAATCAATACCGGCCATGG+AGG 0.709610 1.1:-37609276 MS.gene73201:CDS
GTGGTTTCATAAGGGCTGCG+AGG 0.711383 1.1:-37609545 MS.gene73201:CDS
ATTGCATATAGCATGAGACG+GGG 0.721884 1.1:+37608232 None:intergenic
TTGCATATAGCATGAGACGG+GGG 0.722787 1.1:+37608233 None:intergenic
TTGTTGTGTTCATATCCATG+AGG 0.736385 1.1:+37610212 None:intergenic
AAATCAGAACCCTAACATGG+GGG 0.770325 1.1:-37610000 MS.gene73201:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGATAAAGGGATTTAT+CGG + chr1.1:37608481-37608500 None:intergenic 20.0%
!! ACAAATTGAACAAATACATT+TGG + chr1.1:37610295-37610314 None:intergenic 20.0%
!! GTTAATGATAAATGATCTAT+TGG + chr1.1:37608156-37608175 None:intergenic 20.0%
!! TATAAGTTATTGAGAATTGA+GGG - chr1.1:37609545-37609564 MS.gene73201:CDS 20.0%
!!! ATGTTTATGATGGATTATAT+AGG - chr1.1:37609471-37609490 MS.gene73201:CDS 20.0%
!!! GATTTTGAGAAAATGATAAA+GGG + chr1.1:37608490-37608509 None:intergenic 20.0%
! AAAACGGTTTATAGATAGAT+GGG - chr1.1:37610135-37610154 MS.gene73201:CDS 25.0%
! AAAGAAACAAGAATCATGTT+CGG - chr1.1:37608644-37608663 MS.gene73201:CDS 25.0%
! AATTATTGAGGAGAAGAAAT+TGG - chr1.1:37608818-37608837 MS.gene73201:CDS 25.0%
! AATTTGTGATCAGAAATTAG+AGG - chr1.1:37609346-37609365 MS.gene73201:CDS 25.0%
! ACCTGATATAGATTATTCTA+TGG - chr1.1:37610219-37610238 MS.gene73201:CDS 25.0%
! ACTCGTTAATATATCCAAAA+CGG - chr1.1:37610119-37610138 MS.gene73201:CDS 25.0%
! ATAAGTTATTGAGAATTGAG+GGG - chr1.1:37609546-37609565 MS.gene73201:CDS 25.0%
! ATTTGTGATCAGAAATTAGA+GGG - chr1.1:37609347-37609366 MS.gene73201:CDS 25.0%
! GTATAAGTTATTGAGAATTG+AGG - chr1.1:37609544-37609563 MS.gene73201:CDS 25.0%
! TCAGGTATTAATTGATATGA+TGG + chr1.1:37610205-37610224 None:intergenic 25.0%
! TCCATAGAATAATCTATATC+AGG + chr1.1:37610223-37610242 None:intergenic 25.0%
!! TGATTCTTGTTTCTTTGAAA+TGG + chr1.1:37608640-37608659 None:intergenic 25.0%
!! TTGATTTTCTTCCTAAAAGT+AGG - chr1.1:37609192-37609211 MS.gene73201:CDS 25.0%
!!! CGATTTTGAGAAAATGATAA+AGG + chr1.1:37608491-37608510 None:intergenic 25.0%
!!! GATTCTTGTTTCTTTGAAAT+GGG + chr1.1:37608639-37608658 None:intergenic 25.0%
!!! GCTCAAATTTTAACAATGAA+TGG - chr1.1:37610094-37610113 MS.gene73201:CDS 25.0%
AAGAAATCCTCAAAAGGTTT+AGG + chr1.1:37608309-37608328 None:intergenic 30.0%
ATGTCATTAAATAGCCTAAC+AGG + chr1.1:37609689-37609708 None:intergenic 30.0%
CAAAACGGTTTATAGATAGA+TGG - chr1.1:37610134-37610153 MS.gene73201:CDS 30.0%
CTAGGGAGATTAAGAAAATT+GGG - chr1.1:37609603-37609622 MS.gene73201:CDS 30.0%
GGAAGATACTCATAATAAAG+AGG + chr1.1:37609728-37609747 None:intergenic 30.0%
GGATGAGAAAAGAATTATTG+AGG - chr1.1:37608806-37608825 MS.gene73201:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG - chr1.1:37609461-37609480 MS.gene73201:CDS 30.0%
GGTGATGTAATAATCAATAC+CGG - chr1.1:37609290-37609309 MS.gene73201:CDS 30.0%
TCAACAGAAAGACAATACAT+AGG + chr1.1:37609641-37609660 None:intergenic 30.0%
TGTTGATATTTCACACAAGA+GGG - chr1.1:37609655-37609674 MS.gene73201:CDS 30.0%
TTATGAGGATGATATGGAAT+TGG - chr1.1:37609262-37609281 MS.gene73201:CDS 30.0%
! ATGGTGGAATTATGTGTAAT+TGG - chr1.1:37609143-37609162 MS.gene73201:CDS 30.0%
! CATCTATCTATAAACCGTTT+TGG + chr1.1:37610136-37610155 None:intergenic 30.0%
! TATATAGGATTACTGATTGC+TGG - chr1.1:37609486-37609505 MS.gene73201:CDS 30.0%
! TGATTTTTGTGTTCATATCC+AGG + chr1.1:37608405-37608424 None:intergenic 30.0%
!! TGTTGTTCTAAAAAAGGCTA+GGG - chr1.1:37609586-37609605 MS.gene73201:CDS 30.0%
AAGCAAACCCTGAAGATTAT+AGG + chr1.1:37609867-37609886 None:intergenic 35.0%
AAGTAATAGAAGGGGTTTCA+AGG + chr1.1:37608179-37608198 None:intergenic 35.0%
AATTCTTCTTTCTTCCTCCA+TGG + chr1.1:37609316-37609335 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+TGG + chr1.1:37609233-37609252 None:intergenic 35.0%
ACTAAATCAGAACCCTAACA+TGG - chr1.1:37608572-37608591 MS.gene73201:CDS 35.0%
ACTAGTGTGATTGTTTCATG+TGG - chr1.1:37609239-37609258 MS.gene73201:CDS 35.0%
AGACATCATAATCATAGTCG+TGG - chr1.1:37609011-37609030 MS.gene73201:CDS 35.0%
AGAGTTTCCCTATAATCTTC+AGG - chr1.1:37609856-37609875 MS.gene73201:CDS 35.0%
AGCAAACCCTGAAGATTATA+GGG + chr1.1:37609866-37609885 None:intergenic 35.0%
AGTAATAGAAGGGGTTTCAA+GGG + chr1.1:37608178-37608197 None:intergenic 35.0%
ATACATTTGGACTCCAACTA+TGG + chr1.1:37610282-37610301 None:intergenic 35.0%
ATCATAGTCGTGGTTTCATA+AGG - chr1.1:37609021-37609040 MS.gene73201:CDS 35.0%
ATGTGGTTATGAGGATGATA+TGG - chr1.1:37609256-37609275 MS.gene73201:CDS 35.0%
ATTCGTGAGATGAAGTATGA+AGG - chr1.1:37609422-37609441 MS.gene73201:CDS 35.0%
CTAAATCAGAACCCTAACAT+GGG - chr1.1:37608573-37608592 MS.gene73201:CDS 35.0%
CTGTTGATATTTCACACAAG+AGG - chr1.1:37609654-37609673 MS.gene73201:CDS 35.0%
GAGTTTCCCTATAATCTTCA+GGG - chr1.1:37609857-37609876 MS.gene73201:CDS 35.0%
GATGATATGGAATTGGATGA+TGG - chr1.1:37609269-37609288 MS.gene73201:CDS 35.0%
GATTGTTTCATGTGGTTATG+AGG - chr1.1:37609247-37609266 MS.gene73201:CDS 35.0%
GCTAGGGAGATTAAGAAAAT+TGG - chr1.1:37609602-37609621 MS.gene73201:CDS 35.0%
GGAGATTAAGAAAATTGGGT+TGG - chr1.1:37609607-37609626 MS.gene73201:CDS 35.0%
GGTAGCTATGGTTAAGAAAA+AGG - chr1.1:37608668-37608687 MS.gene73201:CDS 35.0%
TAAATCAGAACCCTAACATG+GGG - chr1.1:37608574-37608593 MS.gene73201:CDS 35.0%
TAATGAAGGACCGAAAGTTA+TGG - chr1.1:37609054-37609073 MS.gene73201:CDS 35.0%
TACGTCTTTGGATCTTATTC+AGG - chr1.1:37610021-37610040 MS.gene73201:CDS 35.0%
TATAGATAGATGGGCAGAAT+GGG - chr1.1:37610144-37610163 MS.gene73201:CDS 35.0%
TCATAGTCGTGGTTTCATAA+GGG - chr1.1:37609022-37609041 MS.gene73201:CDS 35.0%
TGTTGTGTTCATATCCATGA+GGG + chr1.1:37608365-37608384 None:intergenic 35.0%
TTATAGATAGATGGGCAGAA+TGG - chr1.1:37610143-37610162 MS.gene73201:CDS 35.0%
TTCCCTTGTTAAAATTACCC+CGG + chr1.1:37610071-37610090 None:intergenic 35.0%
TTCGTGAGATGAAGTATGAA+GGG - chr1.1:37609423-37609442 MS.gene73201:CDS 35.0%
TTGCATATGCAGATACAAGA+TGG - chr1.1:37609167-37609186 MS.gene73201:CDS 35.0%
TTGTTGTGTTCATATCCATG+AGG + chr1.1:37608366-37608385 None:intergenic 35.0%
! AACCACGGAAAAGTAGTTTT+CGG + chr1.1:37609749-37609768 None:intergenic 35.0%
! ATTGGCTGATGAAGTTTTTG+TGG - chr1.1:37608836-37608855 MS.gene73201:CDS 35.0%
! CGATGTTTTCTTGTATATGG+TGG - chr1.1:37609127-37609146 MS.gene73201:CDS 35.0%
! TGCTTTTGCTCTATGAAGAA+TGG - chr1.1:37609830-37609849 MS.gene73201:CDS 35.0%
! TGGCGATGTTTTCTTGTATA+TGG - chr1.1:37609124-37609143 MS.gene73201:CDS 35.0%
! TTTTGCTCTATGAAGAATGG+AGG - chr1.1:37609833-37609852 MS.gene73201:CDS 35.0%
! TTTTGTGTTCATATCCAGGA+GGG + chr1.1:37608401-37608420 None:intergenic 35.0%
! TTTTTGTGTTCATATCCAGG+AGG + chr1.1:37608402-37608421 None:intergenic 35.0%
!! ATACCGGGGTAATTTTAACA+AGG - chr1.1:37610065-37610084 MS.gene73201:CDS 35.0%
!! CCTCAAAAGGTTTAGGTTTT+GGG + chr1.1:37608302-37608321 None:intergenic 35.0%
!! GGGTAGTGTTGTTCTAAAAA+AGG - chr1.1:37609580-37609599 MS.gene73201:CDS 35.0%
!! GTGTTGTTCTAAAAAAGGCT+AGG - chr1.1:37609585-37609604 MS.gene73201:CDS 35.0%
!! TACCGGGGTAATTTTAACAA+GGG - chr1.1:37610066-37610085 MS.gene73201:CDS 35.0%
!! TCCTCAAAAGGTTTAGGTTT+TGG + chr1.1:37608303-37608322 None:intergenic 35.0%
!! TGTTTCTGAAGTTGCGATTA+TGG - chr1.1:37608911-37608930 MS.gene73201:CDS 35.0%
!!! AAGCCTTTGGTTTTTGAATG+TGG - chr1.1:37609896-37609915 MS.gene73201:CDS 35.0%
!!! AGGGAAATGAGGTTGTTTTT+GGG + chr1.1:37608346-37608365 None:intergenic 35.0%
AAACAACCTCATTTCCCTCA+TGG - chr1.1:37608348-37608367 MS.gene73201:CDS 40.0%
AAATCAGAACCCTAACATGG+GGG - chr1.1:37608575-37608594 MS.gene73201:CDS 40.0%
AGAAGATGTTGGATGAGGAT+AGG - chr1.1:37608883-37608902 MS.gene73201:CDS 40.0%
AGAAGGGGAAGTAATAGAAG+GGG + chr1.1:37608187-37608206 None:intergenic 40.0%
AGAGAACTCAGCATAGACTA+TGG - chr1.1:37610385-37610404 MS.gene73201:CDS 40.0%
ATAGATAGATGGGCAGAATG+GGG - chr1.1:37610145-37610164 MS.gene73201:CDS 40.0%
ATTGCATATAGCATGAGACG+GGG + chr1.1:37610346-37610365 None:intergenic 40.0%
ATTGGTTGAGGAGAAGATGT+TGG - chr1.1:37608872-37608891 MS.gene73201:CDS 40.0%
CAAATCACTCCCATTTACAC+CGG - chr1.1:37608252-37608271 MS.gene73201:CDS 40.0%
CATCGCGATAAAAGGATAGT+TGG - chr1.1:37609080-37609099 MS.gene73201:CDS 40.0%
CATTGCATATAGCATGAGAC+GGG + chr1.1:37610347-37610366 None:intergenic 40.0%
CCATTGCATATAGCATGAGA+CGG + chr1.1:37610348-37610367 None:intergenic 40.0%
CCTAAAAGTAGGTCTTCCAA+TGG - chr1.1:37609203-37609222 MS.gene73201:CDS 40.0%
GAAACAAGAATCATGTTCGG+CGG - chr1.1:37608647-37608666 MS.gene73201:CDS 40.0%
GAGAAGGGGAAGTAATAGAA+GGG + chr1.1:37608188-37608207 None:intergenic 40.0%
GATTGAGGGTTGACATGTTA+GGG + chr1.1:37608230-37608249 None:intergenic 40.0%
GGATTTATCGGAAGTAGCAT+TGG + chr1.1:37608469-37608488 None:intergenic 40.0%
GGTGAGAAGAAGTTTGAGAA+GGG + chr1.1:37608203-37608222 None:intergenic 40.0%
GGTGTAAATGGGAGTGATTT+GGG + chr1.1:37608253-37608272 None:intergenic 40.0%
GGTTTCAGATCTGAGTATGA+AGG - chr1.1:37608710-37608729 MS.gene73201:CDS 40.0%
GTAATAATCAATACCGGCCA+TGG - chr1.1:37609296-37609315 MS.gene73201:CDS 40.0%
GTGAGAAGAAGTTTGAGAAG+GGG + chr1.1:37608202-37608221 None:intergenic 40.0%
GTGGTGAAGAAATCCTCAAA+AGG + chr1.1:37608315-37608334 None:intergenic 40.0%
GTGTAAATGGGAGTGATTTG+GGG + chr1.1:37608252-37608271 None:intergenic 40.0%
GTTCTGATTTAGTCCAAGGT+CGG + chr1.1:37608565-37608584 None:intergenic 40.0%
TATGGTTGCATCGCGATAAA+AGG - chr1.1:37609072-37609091 MS.gene73201:CDS 40.0%
TCAACATTGCGAAATGTTGC+TGG - chr1.1:37610247-37610266 MS.gene73201:CDS 40.0%
TCAGTCAATATTTCCGACCT+TGG - chr1.1:37608549-37608568 MS.gene73201:CDS 40.0%
TCATATCCATGAGGGAAATG+AGG + chr1.1:37608357-37608376 None:intergenic 40.0%
TCGATACCTGGAGTTTATGT+TGG - chr1.1:37609104-37609123 MS.gene73201:CDS 40.0%
TCGTGAGATGAAGTATGAAG+GGG - chr1.1:37609424-37609443 MS.gene73201:CDS 40.0%
TCTATGCTGAGTTCTCTCAA+TGG + chr1.1:37610382-37610401 None:intergenic 40.0%
TCTTTGGATCTTATTCAGGC+TGG - chr1.1:37610025-37610044 MS.gene73201:CDS 40.0%
TGAAGTTGCGATTATGGAGA+TGG - chr1.1:37608917-37608936 MS.gene73201:CDS 40.0%
TGAGAAGGGGAAGTAATAGA+AGG + chr1.1:37608189-37608208 None:intergenic 40.0%
TGGTGAGAAGAAGTTTGAGA+AGG + chr1.1:37608204-37608223 None:intergenic 40.0%
TGTGATCAGAAATTAGAGGG+TGG - chr1.1:37609350-37609369 MS.gene73201:CDS 40.0%
TGTTGTAGTACTCAGTGTAG+AGG + chr1.1:37608434-37608453 None:intergenic 40.0%
TTATGATTCGCTACGTGTGT+TGG - chr1.1:37608773-37608792 MS.gene73201:CDS 40.0%
TTGGAGCGTAGTATGCATTA+CGG - chr1.1:37609383-37609402 MS.gene73201:CDS 40.0%
! CCCAAAACCTAAACCTTTTG+AGG - chr1.1:37608299-37608318 MS.gene73201:CDS 40.0%
! GAAGTAGCATTGGAAGATTG+TGG + chr1.1:37608459-37608478 None:intergenic 40.0%
! TAGGGTTCTGATTTAGTCCA+AGG + chr1.1:37608569-37608588 None:intergenic 40.0%
! TTCAGGGTTTGCTTGTGAAA+GGG - chr1.1:37609873-37609892 MS.gene73201:CDS 40.0%
!! AACTACTTTTCCGTGGTTTG+TGG - chr1.1:37609751-37609770 MS.gene73201:CDS 40.0%
!! ACGTGTGTTGGAAAGTATTG+AGG - chr1.1:37608785-37608804 MS.gene73201:CDS 40.0%
!! ACTGATTGCTGGTTTGAAGA+AGG - chr1.1:37609497-37609516 MS.gene73201:CDS 40.0%
!! CCATTGGAAGACCTACTTTT+AGG + chr1.1:37609206-37609225 None:intergenic 40.0%
!! CTGATTGCTGGTTTGAAGAA+GGG - chr1.1:37609498-37609517 MS.gene73201:CDS 40.0%
!! GAGGGAAATGAGGTTGTTTT+TGG + chr1.1:37608347-37608366 None:intergenic 40.0%
!! TTCCGAAAACTACTTTTCCG+TGG - chr1.1:37609744-37609763 MS.gene73201:CDS 40.0%
!!! AGGTTGTTTTTGGGAACCTT+GGG + chr1.1:37608337-37608356 None:intergenic 40.0%
!!! TTTAGGTTTTGGGACGAGTA+TGG + chr1.1:37608292-37608311 None:intergenic 40.0%
AAAGGGGATCAAGCATAGGT+TGG - chr1.1:37609964-37609983 MS.gene73201:CDS 45.0%
AATCAACCTCATTTCCCTCC+TGG - chr1.1:37608384-37608403 MS.gene73201:CDS 45.0%
AATTGAGGGGCAAGCTAAGA+TGG - chr1.1:37609559-37609578 MS.gene73201:CDS 45.0%
ACAAAATCCACCCCCATGTT+AGG + chr1.1:37608588-37608607 None:intergenic 45.0%
ACATCGCCAACATAAACTCC+AGG + chr1.1:37609113-37609132 None:intergenic 45.0%
AGAGGGAGAATGTTCCTGTT+AGG - chr1.1:37609672-37609691 MS.gene73201:CDS 45.0%
AGATGCATCGCAACATGATG+AGG - chr1.1:37608736-37608755 MS.gene73201:CDS 45.0%
AGGATAGTTGGATCGATACC+TGG - chr1.1:37609092-37609111 MS.gene73201:CDS 45.0%
ATAATCAATACCGGCCATGG+AGG - chr1.1:37609299-37609318 MS.gene73201:CDS 45.0%
ATGCTGAGTTCTCTCAATGG+AGG + chr1.1:37610379-37610398 None:intergenic 45.0%
ATTGAGGGGCAAGCTAAGAT+GGG - chr1.1:37609560-37609579 MS.gene73201:CDS 45.0%
CAAAATCCACCCCCATGTTA+GGG + chr1.1:37608587-37608606 None:intergenic 45.0%
CACAAAAGGGGATCAAGCAT+AGG - chr1.1:37609960-37609979 MS.gene73201:CDS 45.0%
CCGTCTCATGCTATATGCAA+TGG - chr1.1:37610345-37610364 MS.gene73201:CDS 45.0%
CCTTTATCTGCGAGTATACC+GGG - chr1.1:37610050-37610069 MS.gene73201:CDS 45.0%
CGCGATGCAACCATAACTTT+CGG + chr1.1:37609067-37609086 None:intergenic 45.0%
CGGAATCGTGTTGCACAAAA+GGG - chr1.1:37609947-37609966 MS.gene73201:CDS 45.0%
CGGTGTAAATGGGAGTGATT+TGG + chr1.1:37608254-37608273 None:intergenic 45.0%
CGTGAGATGAAGTATGAAGG+GGG - chr1.1:37609425-37609444 MS.gene73201:CDS 45.0%
CTCTGATGAACCACAAACCA+CGG + chr1.1:37609764-37609783 None:intergenic 45.0%
CTGGCTATATGAGCCATAGT+TGG - chr1.1:37610266-37610285 MS.gene73201:CDS 45.0%
CTTTATCTGCGAGTATACCG+GGG - chr1.1:37610051-37610070 MS.gene73201:CDS 45.0%
GACTGAGTTCTCCATTGAAG+CGG + chr1.1:37608535-37608554 None:intergenic 45.0%
GCAACACGATTCCGACAATT+GGG + chr1.1:37609941-37609960 None:intergenic 45.0%
GCAACATGATGAGGAGAACA+AGG - chr1.1:37608745-37608764 MS.gene73201:CDS 45.0%
GCATTACGGGATCGAGATTA+GGG - chr1.1:37609397-37609416 MS.gene73201:CDS 45.0%
GCCTTTATCTGCGAGTATAC+CGG - chr1.1:37610049-37610068 MS.gene73201:CDS 45.0%
GCGATTATGGAGATGGAGAT+GGG - chr1.1:37608924-37608943 MS.gene73201:CDS 45.0%
GGAATCGTGTTGCACAAAAG+GGG - chr1.1:37609948-37609967 MS.gene73201:CDS 45.0%
GGATTGAGGGTTGACATGTT+AGG + chr1.1:37608231-37608250 None:intergenic 45.0%
GGGCCACATTCAAAAACCAA+AGG + chr1.1:37609902-37609921 None:intergenic 45.0%
GGGTTGACATGTTAGGGATT+TGG + chr1.1:37608224-37608243 None:intergenic 45.0%
TAGATAGATGGGCAGAATGG+GGG - chr1.1:37610146-37610165 MS.gene73201:CDS 45.0%
TCATATCCAGGAGGGAAATG+AGG + chr1.1:37608393-37608412 None:intergenic 45.0%
TCGGAATCGTGTTGCACAAA+AGG - chr1.1:37609946-37609965 MS.gene73201:CDS 45.0%
TGAGGAGAAGATGTTGGATG+AGG - chr1.1:37608878-37608897 MS.gene73201:CDS 45.0%
TGCAACACGATTCCGACAAT+TGG + chr1.1:37609942-37609961 None:intergenic 45.0%
TGCATTACGGGATCGAGATT+AGG - chr1.1:37609396-37609415 MS.gene73201:CDS 45.0%
TGCGATTATGGAGATGGAGA+TGG - chr1.1:37608923-37608942 MS.gene73201:CDS 45.0%
TGCTGAGTTCTCTCAATGGA+GGG + chr1.1:37610378-37610397 None:intergenic 45.0%
TGGAGCGTAGTATGCATTAC+GGG - chr1.1:37609384-37609403 MS.gene73201:CDS 45.0%
TGGGAGGACAAGAGCAAAAA+GGG + chr1.1:37609922-37609941 None:intergenic 45.0%
TGGTTTGAAGAAGGGATGTC+TGG - chr1.1:37609506-37609525 MS.gene73201:CDS 45.0%
TTGCATATAGCATGAGACGG+GGG + chr1.1:37610345-37610364 None:intergenic 45.0%
TTGGGAGGACAAGAGCAAAA+AGG + chr1.1:37609923-37609942 None:intergenic 45.0%
! AGCTACTGGTTGTGAATGTG+TGG - chr1.1:37609790-37609809 MS.gene73201:CDS 45.0%
! CTTCAGGGTTTGCTTGTGAA+AGG - chr1.1:37609872-37609891 MS.gene73201:CDS 45.0%
! GGCTGATGAAGTTTTTGTGG+AGG - chr1.1:37608839-37608858 MS.gene73201:CDS 45.0%
! TACTGGTTGTGAATGTGTGG+AGG - chr1.1:37609793-37609812 MS.gene73201:CDS 45.0%
! TGGTGATGAGAACATGGAAG+AGG - chr1.1:37608950-37608969 MS.gene73201:CDS 45.0%
! TGGTTTGTGGTTCATCAGAG+CGG - chr1.1:37609764-37609783 MS.gene73201:CDS 45.0%
!! AGCATAGGTTGGAAGTGTTC+AGG - chr1.1:37609975-37609994 MS.gene73201:CDS 45.0%
!! CAATGCTTTTGCCGCTTCAA+TGG - chr1.1:37608521-37608540 MS.gene73201:CDS 45.0%
!! TAACATGGGGGTGGATTTTG+TGG - chr1.1:37608587-37608606 MS.gene73201:CDS 45.0%
!! TGAAGCGGCAAAAGCATTGT+TGG + chr1.1:37608520-37608539 None:intergenic 45.0%
!!! GAGGTTGTTTTTGGGAACCT+TGG + chr1.1:37608338-37608357 None:intergenic 45.0%
!!! TTGTTTTTGGGAACCTTGGG+TGG + chr1.1:37608334-37608353 None:intergenic 45.0%
AACATGGAAGAGGCAGCAAC+AGG - chr1.1:37608960-37608979 MS.gene73201:CDS 50.0%
AAGGGCTGCGAGGTTAATGA+AGG - chr1.1:37609040-37609059 MS.gene73201:CDS 50.0%
ACACGATTCCGACAATTGGG+AGG + chr1.1:37609938-37609957 None:intergenic 50.0%
ACATGGAAGAGGCAGCAACA+GGG - chr1.1:37608961-37608980 MS.gene73201:CDS 50.0%
AGAGGGTGGAAACCTTGCTT+TGG - chr1.1:37609364-37609383 MS.gene73201:CDS 50.0%
AGATAGATGGGCAGAATGGG+GGG - chr1.1:37610147-37610166 MS.gene73201:CDS 50.0%
AGGCAAGTCAGATGCTTGTG+AGG - chr1.1:37608688-37608707 MS.gene73201:CDS 50.0%
ATCATGTTCGGCGGTAGCTA+TGG - chr1.1:37608656-37608675 MS.gene73201:CDS 50.0%
CCCGGTATACTCGCAGATAA+AGG + chr1.1:37610053-37610072 None:intergenic 50.0%
CTTCTTTCTTCCTCCATGGC+CGG + chr1.1:37609312-37609331 None:intergenic 50.0%
GAGGATTTCTTCACCACCCA+AGG - chr1.1:37608318-37608337 MS.gene73201:CDS 50.0%
GCATACTACGCTCCAAAGCA+AGG + chr1.1:37609379-37609398 None:intergenic 50.0%
GCTCTTGTCCTCCCAATTGT+CGG - chr1.1:37609927-37609946 MS.gene73201:CDS 50.0%
GCTTGTGAAAGGGAAGCCTT+TGG - chr1.1:37609883-37609902 MS.gene73201:CDS 50.0%
GGCAAGTCAGATGCTTGTGA+GGG - chr1.1:37608689-37608708 MS.gene73201:CDS 50.0%
GGGACGAGTATGGTTTGAAG+CGG + chr1.1:37608282-37608301 None:intergenic 50.0%
GGTTTGTGGTTCATCAGAGC+GGG - chr1.1:37609765-37609784 MS.gene73201:CDS 50.0%
GTGGAGGGGGAAATGTTGAA+TGG - chr1.1:37608984-37609003 MS.gene73201:CDS 50.0%
TGGTTGGGGAGTTACGTCTT+TGG - chr1.1:37610009-37610028 MS.gene73201:CDS 50.0%
TGTGGAGGCAGTGAAGAGAT+TGG - chr1.1:37608854-37608873 MS.gene73201:CDS 50.0%
TGTGTGGAGGCTTGTACTGA+TGG - chr1.1:37609806-37609825 MS.gene73201:CDS 50.0%
! GGCAGTGAAGAGATTGGTTG+AGG - chr1.1:37608860-37608879 MS.gene73201:CDS 50.0%
! GGGAGTGATTTGGGGATTGA+GGG + chr1.1:37608244-37608263 None:intergenic 50.0%
! TATGGTTTGAAGCGGTGCTC+CGG + chr1.1:37608274-37608293 None:intergenic 50.0%
! TGGGAGTGATTTGGGGATTG+AGG + chr1.1:37608245-37608264 None:intergenic 50.0%
!! AGTAGCAATTGGCTCGCCAT+TGG + chr1.1:37609222-37609241 None:intergenic 50.0%
AAGCGGTGCTCCGGTGTAAA+TGG + chr1.1:37608265-37608284 None:intergenic 55.0%
ACTATGGCATCCCTGACGAG+TGG - chr1.1:37610401-37610420 MS.gene73201:CDS 55.0%
AGCGGTGCTCCGGTGTAAAT+GGG + chr1.1:37608264-37608283 None:intergenic 55.0%
AGGTCTGCGCAAACTGGTTG+GGG - chr1.1:37609995-37610014 MS.gene73201:CDS 55.0%
ATGGAGATGGAGATGGGAGC+TGG - chr1.1:37608930-37608949 MS.gene73201:CDS 55.0%
CAGGTCTGCGCAAACTGGTT+GGG - chr1.1:37609994-37610013 MS.gene73201:CDS 55.0%
CATCAGAGCGGGAAAGCTAC+TGG - chr1.1:37609776-37609795 MS.gene73201:CDS 55.0%
CATGGAAGAGGCAGCAACAG+GGG - chr1.1:37608962-37608981 MS.gene73201:CDS 55.0%
CTATGGCATCCCTGACGAGT+GGG - chr1.1:37610402-37610421 MS.gene73201:CDS 55.0%
GTGGTTTCATAAGGGCTGCG+AGG - chr1.1:37609030-37609049 MS.gene73201:CDS 55.0%
GTGTTCAGGTCTGCGCAAAC+TGG - chr1.1:37609989-37610008 MS.gene73201:CDS 55.0%
TCAGAACCCTAACATGGGGG+TGG - chr1.1:37608578-37608597 MS.gene73201:CDS 55.0%
TCAGGTCTGCGCAAACTGGT+TGG - chr1.1:37609993-37610012 MS.gene73201:CDS 55.0%
! GGGAGCTGGTGATGAGAACA+TGG - chr1.1:37608944-37608963 MS.gene73201:CDS 55.0%
!! GGGTGCGTCTAGCTCTGGTA+AGG - chr1.1:37609445-37609464 MS.gene73201:CDS 60.0%
AGAGGCAGCAACAGGGGTGG+AGG - chr1.1:37608968-37608987 MS.gene73201:CDS 65.0%
AGGCAGCAACAGGGGTGGAG+GGG - chr1.1:37608970-37608989 MS.gene73201:CDS 65.0%
GAGGCAGCAACAGGGGTGGA+GGG - chr1.1:37608969-37608988 MS.gene73201:CDS 65.0%
GGAAGAGGCAGCAACAGGGG+TGG - chr1.1:37608965-37608984 MS.gene73201:CDS 65.0%
TGGCATCCCTGACGAGTGGG+CGG - chr1.1:37610405-37610424 MS.gene73201:CDS 65.0%
! GAAGGGGGTGCGTCTAGCTC+TGG - chr1.1:37609440-37609459 MS.gene73201:CDS 65.0%
AGCTTGCCCGCCCACTCGTC+AGG + chr1.1:37610415-37610434 None:intergenic 70.0%
GCTTGCCCGCCCACTCGTCA+GGG + chr1.1:37610414-37610433 None:intergenic 70.0%
GGCAGCAACAGGGGTGGAGG+GGG - chr1.1:37608971-37608990 MS.gene73201:CDS 70.0%
GGCATCCCTGACGAGTGGGC+GGG - chr1.1:37610406-37610425 MS.gene73201:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 37608147 37610450 37608147 ID=MS.gene73201
chr1.1 mRNA 37608147 37610450 37608147 ID=MS.gene73201.t1;Parent=MS.gene73201
chr1.1 exon 37608147 37610450 37608147 ID=MS.gene73201.t1.exon1;Parent=MS.gene73201.t1
chr1.1 CDS 37608147 37610450 37608147 ID=cds.MS.gene73201.t1;Parent=MS.gene73201.t1
Gene Sequence

>MS.gene73201

ATGAATCCAATAGATCATTTATCATTAACCCTTGAAACCCCTTCTATTACTTCCCCTTCTCAAACTTCTTCTCACCAAATCCCTAACATGTCAACCCTCAATCCCCAAATCACTCCCATTTACACCGGAGCACCGCTTCAAACCATACTCGTCCCAAAACCTAAACCTTTTGAGGATTTCTTCACCACCCAAGGTTCCCAAAAACAACCTCATTTCCCTCATGGATATGAACACAACAATCAACCTCATTTCCCTCCTGGATATGAACACAAAAATCAATCAAACCTCTACACTGAGTACTACAACATTCCACAATCTTCCAATGCTACTTCCGATAAATCCCTTTATCATTTTCTCAAAATCGATGATTCCAACAATGCTTTTGCCGCTTCAATGGAGAACTCAGTCAATATTTCCGACCTTGGACTAAATCAGAACCCTAACATGGGGGTGGATTTTGTGGATGATAGAATTGATCAATCTATTGTGCCCATTTCAAAGAAACAAGAATCATGTTCGGCGGTAGCTATGGTTAAGAAAAAGGCAAGTCAGATGCTTGTGAGGGTTTCAGATCTGAGTATGAAGGATCAGATGCATCGCAACATGATGAGGAGAACAAGGATGACTTATGATTCGCTACGTGTGTTGGAAAGTATTGAGGATGAGAAAAGAATTATTGAGGAGAAGAAATTGGCTGATGAAGTTTTTGTGGAGGCAGTGAAGAGATTGGTTGAGGAGAAGATGTTGGATGAGGATAGGATATTTGTTTCTGAAGTTGCGATTATGGAGATGGAGATGGGAGCTGGTGATGAGAACATGGAAGAGGCAGCAACAGGGGTGGAGGGGGAAATGTTGAATGGAAGAAGACATCATAATCATAGTCGTGGTTTCATAAGGGCTGCGAGGTTAATGAAGGACCGAAAGTTATGGTTGCATCGCGATAAAAGGATAGTTGGATCGATACCTGGAGTTTATGTTGGCGATGTTTTCTTGTATATGGTGGAATTATGTGTAATTGGTTTGCATATGCAGATACAAGATGGCATTGATTTTCTTCCTAAAAGTAGGTCTTCCAATGGCGAGCCAATTGCTACTAGTGTGATTGTTTCATGTGGTTATGAGGATGATATGGAATTGGATGATGGTGATGTAATAATCAATACCGGCCATGGAGGAAGAAAGAAGAATTCTTCAATTCAAATTTGTGATCAGAAATTAGAGGGTGGAAACCTTGCTTTGGAGCGTAGTATGCATTACGGGATCGAGATTAGGGTCATTCGTGAGATGAAGTATGAAGGGGGTGCGTCTAGCTCTGGTAAGGTTTATGTTTATGATGGATTATATAGGATTACTGATTGCTGGTTTGAAGAAGGGATGTCTGGTTTTAGAGTTTTTAAGTATAAGTTATTGAGAATTGAGGGGCAAGCTAAGATGGGTAGTGTTGTTCTAAAAAAGGCTAGGGAGATTAAGAAAATTGGGTTGGATGTTAAGCCTATGTATTGTCTTTCTGTTGATATTTCACACAAGAGGGAGAATGTTCCTGTTAGGCTATTTAATGACATAGATGACAATCAAGAACCTCTTTATTATGAGTATCTTCCGAAAACTACTTTTCCGTGGTTTGTGGTTCATCAGAGCGGGAAAGCTACTGGTTGTGAATGTGTGGAGGCTTGTACTGATGGCTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCCTATAATCTTCAGGGTTTGCTTGTGAAAGGGAAGCCTTTGGTTTTTGAATGTGGCCCTTTTTGCTCTTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGATCAAGCATAGGTTGGAAGTGTTCAGGTCTGCGCAAACTGGTTGGGGAGTTACGTCTTTGGATCTTATTCAGGCTGGAGCCTTTATCTGCGAGTATACCGGGGTAATTTTAACAAGGGAACAAGCTCAAATTTTAACAATGAATGGTGACTCGTTAATATATCCAAAACGGTTTATAGATAGATGGGCAGAATGGGGGGATTTGTCTCAGATATATAATAATTATGTTCGTCCATCATATCAATTAATACCTGATATAGATTATTCTATGGATATATCAACATTGCGAAATGTTGCTGGCTATATGAGCCATAGTTGGAGTCCAAATGTATTTGTTCAATTTGTTCTCTATGATCATAACAATCTGATGTTCCCCCGTCTCATGCTATATGCAATGGAGAACATCCCTCCATTGAGAGAACTCAGCATAGACTATGGCATCCCTGACGAGTGGGCGGGCAAGCTATCAATATGTATGTAA
Protein sequence

>MS.gene73201.t1

MNPIDHLSLTLETPSITSPSQTSSHQIPNMSTLNPQITPIYTGAPLQTILVPKPKPFEDFFTTQGSQKQPHFPHGYEHNNQPHFPPGYEHKNQSNLYTEYYNIPQSSNATSDKSLYHFLKIDDSNNAFAASMENSVNISDLGLNQNPNMGVDFVDDRIDQSIVPISKKQESCSAVAMVKKKASQMLVRVSDLSMKDQMHRNMMRRTRMTYDSLRVLESIEDEKRIIEEKKLADEVFVEAVKRLVEEKMLDEDRIFVSEVAIMEMEMGAGDENMEEAATGVEGEMLNGRRHHNHSRGFIRAARLMKDRKLWLHRDKRIVGSIPGVYVGDVFLYMVELCVIGLHMQIQDGIDFLPKSRSSNGEPIATSVIVSCGYEDDMELDDGDVIINTGHGGRKKNSSIQICDQKLEGGNLALERSMHYGIEIRVIREMKYEGGASSSGKVYVYDGLYRITDCWFEEGMSGFRVFKYKLLRIEGQAKMGSVVLKKAREIKKIGLDVKPMYCLSVDISHKRENVPVRLFNDIDDNQEPLYYEYLPKTTFPWFVVHQSGKATGCECVEACTDGCFCSMKNGGEFPYNLQGLLVKGKPLVFECGPFCSCPPNCRNRVAQKGIKHRLEVFRSAQTGWGVTSLDLIQAGAFICEYTGVILTREQAQILTMNGDSLIYPKRFIDRWAEWGDLSQIYNNYVRPSYQLIPDIDYSMDISTLRNVAGYMSHSWSPNVFVQFVLYDHNNLMFPRLMLYAMENIPPLRELSIDYGIPDEWAGKLSICM