AlfalfaGEDB | MS.gene73378

M. sativa cultivar XinJiangDaYe / MS.gene73378

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73378.t1	RHN47374.1	93.4	1065	69	1	1	1065	68	1131	0.00E+00	1325.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73378.t1	Q9S7I6	51.5	789	350	10	296	1064	372	1147	1.2e-117	426.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73378.t1	G7KXB0	93.4	1065	69	1	1	1065	1	1064	0.0e+00	1325.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73378.t1	MTR_7g084220	94.476	1050	57	1	16	1065	16	1064	0.0	1995
MS.gene73378.t1	MTR_6g015190	44.314	1108	518	18	29	1064	28	1108	0.0	808
MS.gene73378.t1	MTR_6g015265	44.142	1101	529	16	29	1064	28	1107	0.0	801
MS.gene73378.t1	MTR_1g047670	31.671	1083	624	31	44	1057	48	1083	4.45e-140	450
MS.gene73378.t1	MTR_1g090520	32.042	1136	647	33	1	1060	1	1087	3.03e-137	442
MS.gene73378.t1	MTR_2g070020	33.532	1008	551	27	86	1060	161	1082	1.02e-132	430
MS.gene73378.t1	MTR_2g105680	30.742	1132	638	27	9	1060	3	1068	4.41e-129	420
MS.gene73378.t1	MTR_5g014700	30.703	1052	593	28	33	1063	30	966	2.35e-128	416
MS.gene73378.t1	MTR_5g014700	31.579	190	116	4	21	210	414	589	1.19e-12	72.8
MS.gene73378.t1	MTR_1g079520	31.186	1071	613	29	44	1060	43	1043	3.24e-128	417

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73378.t1	AT3G02130	43.371	1139	544	21	10	1064	9	1130	0.0	793
MS.gene73378.t1	AT3G02130	43.371	1139	544	21	10	1064	26	1147	0.0	792
MS.gene73378.t1	AT1G17230	33.093	1109	617	33	26	1064	23	1076	2.36e-142	456
MS.gene73378.t1	AT1G17230	33.093	1109	617	33	26	1064	23	1076	3.65e-142	456
MS.gene73378.t1	AT5G63930	34.549	987	561	22	86	1057	95	1011	5.89e-139	445
MS.gene73378.t1	AT5G63930	29.725	545	329	12	166	675	5	530	5.26e-45	177
MS.gene73378.t1	AT5G63930	33.151	1095	608	30	34	1057	34	1075	2.93e-137	442
MS.gene73378.t1	AT5G07280	31.660	1036	607	17	86	1063	200	1192	3.00e-133	434
MS.gene73378.t1	AT5G07280	31.071	663	351	13	29	675	25	597	9.40e-61	227
MS.gene73378.t1	AT5G07280	32.620	187	121	4	491	676	94	276	1.07e-13	76.6

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Find 256 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAACAGCACTTCATA+AGG	0.469772	7.2:-23322453	None:intergenic
AAACAATTACTTAGCTCATT+AGG	0.293909	7.2:-23322312	None:intergenic
AAACCGAAATAAGGACGCTT+GGG	0.491779	7.2:+23324032	MS.gene73378:CDS
AAAGCTGATGTCTACAGTTA+CGG	0.496719	7.2:+23324445	MS.gene73378:CDS
AAATATTCCCATCCACCAAA+AGG	0.452953	7.2:-23322203	None:intergenic
AAATCACAACAATCTTTCTG+GGG	0.656955	7.2:+23323463	MS.gene73378:CDS
AAATGTGCCTGCCACATCAG+TGG	0.669524	7.2:-23324377	None:intergenic
AACAGTTTGAAACCGAAATA+AGG	0.353419	7.2:+23324023	MS.gene73378:CDS
AACATCTAGTTGAACAAGAT+TGG	0.398788	7.2:-23323513	None:intergenic
AACATGAAATGGATGCTTCT+AGG	0.339884	7.2:+23323299	MS.gene73378:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCACAACAATCTTTCTG+GGG	+	chr7.2:23323463-23323482	MS.gene73378:CDS	30.0%
AACATCTAGTTGAACAAGAT+TGG	-	chr7.2:23323516-23323535	None:intergenic	30.0%
AGTTTCTACATTTCCCAATT+TGG	-	chr7.2:23322176-23322195	None:intergenic	30.0%
CAACATTATTTCAAGACTTG+TGG	-	chr7.2:23323441-23323460	None:intergenic	30.0%
CTAAATCACAACAATCTTTC+TGG	+	chr7.2:23323461-23323480	MS.gene73378:CDS	30.0%
CTTTCAATTGGTAGATTTCA+AGG	+	chr7.2:23323995-23324014	MS.gene73378:CDS	30.0%
CTTTCATACATGATAGATCA+GGG	+	chr7.2:23324155-23324174	MS.gene73378:CDS	30.0%
GAGATACATTCAAAACAACA+AGG	-	chr7.2:23323376-23323395	None:intergenic	30.0%
GTAAGCAGGAATAATATATC+TGG	+	chr7.2:23322714-23322733	MS.gene73378:CDS	30.0%
GTAGAAAGAGTAAACTTACT+CGG	+	chr7.2:23323792-23323811	MS.gene73378:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	23321541	23324738	23321541	ID=MS.gene73378
chr7.2	mRNA	23321541	23324738	23321541	ID=MS.gene73378.t1;Parent=MS.gene73378
chr7.2	exon	23321541	23324738	23321541	ID=MS.gene73378.t1.exon1;Parent=MS.gene73378.t1
chr7.2	CDS	23321541	23324738	23321541	ID=cds.MS.gene73378.t1;Parent=MS.gene73378.t1

Gene Sequence

>MS.gene73378

ATGGGTCATCATTTTCTTCATCTTCTTCTATGTCTTCTCTTCTTCACTACCCATCACGCAAATGCCTTCAATCCTTCAATTCCCAACGACGCATTGTCTCTTCTCACCTTCAAACGCTTTGTCTCTTCCGACCCTTCAAATCTTCTCTCTGGTTGGAGCCACCGTTCATCTTTCAAATTCTGCAACTGGCACGGCGTCACTTGCGGCGGTGGAGACGGTAGAGTGACTGAACTTAATGTTACCGGTCTTCGCGGCGGTGAATTGGTGTCTGACATTGGAGATTTGTCTGAGCTAAGAGTATTGTCTCTTCCCGGAAACATGTTTTCCGGCGAGATTCCGGTGACTTTGGTGAATCTCCGGGGGCTTGAGGTTCTTGAGCTTCAAGGAAACAACTTTTCAGGGGAAGTGCCTTTTCAGATGAGTTATTTTGAATCAATTATTCTTGTTAATCTATCTGGTAATGCTTTTTCTGGTGAAATTCCAAATGGGTTGGTTTTTTCCAGGAATGTGGAAATTGTTGATTTGTCTAATAATCAATTTTCTGGTTCTATTCCTTTGAATGATTCTGGTAGTTGTGATTCTTTGAAGCATTTGAAACTTTCACATAATTTTTTGACTGGTGAGATTCCACACCAAATTGGGAAATGTAGAAACTTGAGGACCCTTTTGGTGGATGGGAATATTTTGGATGGTGAAATCCCTCGTGAGATTGGGGATGTTGTTGAACTTAGAGTTCTTGATGTTTCTAGAAATAGCCTCACTGGAAGGATACCTAATGAGCTAAGTAATTGTTTGAAATTGTCTGTGCTTGTGCTTACTGATTTGTATGAGGATCACCGCGGTTCGAATGATGGAGGTTTGTTGGAGGACAGTAGGTTTAGAGGTGAATTTAATGCTTTTGTTGGGAATATTCCTTATGAAGTGCTGTTGCTTTTGAGTTTGCGGGTTTTGTGGGCGCCTCGAGCAAATCTCGGTGGACGGTTGCCTGCTGCTGGATGGTCAGATTCATGTTCTCTTAAAGTACTCAATTTGGCACAGAATTATGTTACTGGTGTCGTGCCTGAGAGTGTGGGGATGTGTAGGAATCTAACTTTCTTGGACTTGAGTTCTAACAATTTAGTGGGACATCTGCCTTTGCAGCATCTTCGGGTTCCTTGTATGACATATTTCAATGTAAGCAGGAATAATATATCTGGCATGCTTCCAGGGTTTATGAAAGAAAGGTGTCGATCGAGTAGCACCCTTGCTGCACTCGAACCTGCATTCCTAGAATTGGAAGGTTTGAATGACGCATACTTTAACATTCGTAGTTTGAGATTTCAAGAGAATGCTTTCATTGGTTCAGGTTTTGAAGAGACTGTTGTCGTTAGCCATGACTTCAGCTCGAACAGTTTTGTGGGGCCTTTACCATTGTTCTTTGTTGGAGATAATCTTTTTACCGAAAATGAAAATCGTAACGCATCGTACATGTTGTCTCTCAATAATAATAAATTCAATGGAACGCTTTCAAACCGACTAGTTTCAAACTGTAATGATCTCAAGACATTGTCGGTTAACCTGAGTGTGAACCAACTATGCGGGGAGATTTCCCAAGCGTTGTTTCTGAACTGTCCGCAGTTGATGGATTTTGAAGCGGCATACAATCAAATTGATGGATCAATTGAACCTGGAATAGGTGAGTTGGCATTACTTCGGTATCTTGATTTGACTGGAAACAAATTATCGGGAGAACTGCCTAATCAATTGGGAAACTTAAAAAACATGAAATGGATGCTTCTAGGAGGAAACAATCTTACAGGCGAAATTCCTCACCAACTTGGTAGATTGACTTCCCTTGTTGTTTTGAATGTATCTCACAATTCACTAATTGGAACAATTCCACCAAGTTTGTCAAATGCCACAAGTCTTGAAATAATGTTGCTAAATCACAACAATCTTTCTGGGGAAATACCTCTATCGGTTTCTGCTCTTTCCAATCTTGTTCAACTAGATGTTTCATTCAACAATCTTTCCGGTCATATTCCTCCTCTTCAACACCCGAGGGATTGTGGTTCTTATAAAGGGAACCAACACCTGCACTCTTGCCCTGATCCATACTTTGACTCGCCTGCTTCTCTCCCAGCTCCTCTTGCAGTCAAGAATTCCCATAGTCGTCGTAGATGGAGGAAAGGAAGGACTGTGGTTATTGCGGTGTCCGCTTCTGCTTTGGTGGGTCTATGTGCACTTTTGGGATTAGTGTTGGTGATTTGTTGTAGAAAGAGTAAACTTACTCGGCTTAGCAGCATTAGAAGGCGAGAAGTGGTGACCTTTCAAGTTGTTCCAATAGAATTGAGTTACGACAGTGTGGTCACAACTACCGGAAATTTCAGCATCCGGTATCTAATTGGCACAGGTGGCTTTGGATCAACTTACAAAGCAGAGCTATCACCGGGTTTTCTTGTTGCCATAAAGAGGCTTTCAATTGGTAGATTTCAAGGCATGCAACAGTTTGAAACCGAAATAAGGACGCTTGGGAGAATTCGACACAAGAATCTCGTGACTCTAATTGGCTATTACGTAGGAAAAGCTGAAATGCTGTTAATTTACAATTACCTCTCTGGTGGAAACCTTGAAGCTTTCATACATGATAGATCAGGGAAAAATGTGCAGTGGCCGGTTATTTACAAAATAGCAAAAGACATCGCCGAGGCCCTTGCTTACCTCCATTACTCTTGTGTTCCTCGCATAGTTCATCGAGATATCAAGCCTAGCAACATTTTACTTGACGAAGATCTTAATGCGTACCTGTCTGATTTTGGCTTGGCACGGCTGCTGGAGGTATCCGAGACTCATGCCACCACTGATGTGGCAGGCACATTTGGTTATGTTGCGCCTGAGTACGCCACCACTTGTAGGGTTTCTGATAAAGCTGATGTCTACAGTTACGGTGTAGTGCTGTTAGAATTGATATCAGGAAGAAGGTCGCTTGATCCGTCGTTTTCTGATTATGGAAATGGATTCAATATAGTACCGTGGGCTGAGCTTCTAATGACCGAAGGTCGTTGTTCAGAGCTGTTTTCATCGGCTTTGTGGGAAGTAGGGCCCAAGGAAAAGTTGCTAGGGCTTTTAAAGATTGCATTAACTTGCACAGAAGAGACTCTTTCTATTCGACCGTCGATGAAGCATGTTCTCGACAAATTGAAACAGTTGAAAAGTTGA

Protein sequence

>MS.gene73378.t1

MGHHFLHLLLCLLFFTTHHANAFNPSIPNDALSLLTFKRFVSSDPSNLLSGWSHRSSFKFCNWHGVTCGGGDGRVTELNVTGLRGGELVSDIGDLSELRVLSLPGNMFSGEIPVTLVNLRGLEVLELQGNNFSGEVPFQMSYFESIILVNLSGNAFSGEIPNGLVFSRNVEIVDLSNNQFSGSIPLNDSGSCDSLKHLKLSHNFLTGEIPHQIGKCRNLRTLLVDGNILDGEIPREIGDVVELRVLDVSRNSLTGRIPNELSNCLKLSVLVLTDLYEDHRGSNDGGLLEDSRFRGEFNAFVGNIPYEVLLLLSLRVLWAPRANLGGRLPAAGWSDSCSLKVLNLAQNYVTGVVPESVGMCRNLTFLDLSSNNLVGHLPLQHLRVPCMTYFNVSRNNISGMLPGFMKERCRSSSTLAALEPAFLELEGLNDAYFNIRSLRFQENAFIGSGFEETVVVSHDFSSNSFVGPLPLFFVGDNLFTENENRNASYMLSLNNNKFNGTLSNRLVSNCNDLKTLSVNLSVNQLCGEISQALFLNCPQLMDFEAAYNQIDGSIEPGIGELALLRYLDLTGNKLSGELPNQLGNLKNMKWMLLGGNNLTGEIPHQLGRLTSLVVLNVSHNSLIGTIPPSLSNATSLEIMLLNHNNLSGEIPLSVSALSNLVQLDVSFNNLSGHIPPLQHPRDCGSYKGNQHLHSCPDPYFDSPASLPAPLAVKNSHSRRRWRKGRTVVIAVSASALVGLCALLGLVLVICCRKSKLTRLSSIRRREVVTFQVVPIELSYDSVVTTTGNFSIRYLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGMQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMLLIYNYLSGGNLEAFIHDRSGKNVQWPVIYKIAKDIAEALAYLHYSCVPRIVHRDIKPSNILLDEDLNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSYGVVLLELISGRRSLDPSFSDYGNGFNIVPWAELLMTEGRCSELFSSALWEVGPKEKLLGLLKIALTCTEETLSIRPSMKHVLDKLKQLKS