Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73495.t1 | AET00566.2 | 89.5 | 277 | 25 | 1 | 1 | 277 | 138 | 410 | 9.30E-131 | 476.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73495.t1 | Q6IP65 | 52.1 | 265 | 120 | 2 | 35 | 299 | 28 | 285 | 2.1e-67 | 257.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73495.t1 | G7K8L3 | 89.5 | 277 | 25 | 1 | 1 | 277 | 138 | 410 | 6.7e-131 | 476.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene73495.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73495.t1 | MTR_5g093460 | 89.209 | 278 | 26 | 1 | 1 | 278 | 138 | 411 | 1.74e-179 | 503 |
| MS.gene73495.t1 | MTR_5g093460 | 64.516 | 155 | 43 | 2 | 26 | 172 | 1 | 151 | 1.93e-54 | 183 |
| MS.gene73495.t1 | MTR_3g018640 | 63.504 | 274 | 97 | 1 | 1 | 274 | 9 | 279 | 1.80e-113 | 330 |
| MS.gene73495.t1 | MTR_8g106940 | 57.191 | 299 | 121 | 2 | 1 | 299 | 9 | 300 | 3.72e-111 | 325 |
| MS.gene73495.t1 | MTR_3g053170 | 59.341 | 273 | 101 | 3 | 30 | 302 | 26 | 288 | 1.30e-105 | 310 |
| MS.gene73495.t1 | MTR_6g065170 | 56.579 | 304 | 118 | 3 | 1 | 299 | 9 | 303 | 3.31e-105 | 310 |
| MS.gene73495.t1 | MTR_1g056470 | 59.751 | 241 | 92 | 2 | 13 | 252 | 17 | 253 | 1.36e-95 | 283 |
| MS.gene73495.t1 | MTR_1g043540 | 66.116 | 121 | 40 | 1 | 134 | 254 | 6 | 125 | 2.07e-45 | 150 |
| MS.gene73495.t1 | MTR_1g043500 | 61.290 | 62 | 23 | 1 | 191 | 251 | 3 | 64 | 1.85e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73495.t1 | AT3G20800 | 57.721 | 272 | 108 | 2 | 26 | 297 | 35 | 299 | 3.04e-102 | 302 |
| MS.gene73495.t1 | AT5G12980 | 53.285 | 274 | 121 | 2 | 30 | 303 | 35 | 301 | 2.48e-93 | 279 |
| MS.gene73495.t1 | AT2G32550 | 31.466 | 232 | 149 | 4 | 49 | 272 | 31 | 260 | 3.38e-28 | 110 |
| MS.gene73495.t1 | AT2G32550 | 30.827 | 266 | 170 | 7 | 18 | 272 | 37 | 299 | 1.15e-27 | 109 |
| MS.gene73495.t1 | AT2G32550 | 30.244 | 205 | 135 | 3 | 76 | 272 | 1 | 205 | 2.04e-22 | 93.6 |
Find 55 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGACAATTGATGAAAT+TGG | 0.182381 | 5.2:+78612179 | None:intergenic |
| ATTTCAGATGACGTCATTTC+AGG | 0.232530 | 5.2:-78614894 | MS.gene73495:intron |
| CCTTTATTGTGGAATTCTTT+TGG | 0.239207 | 5.2:-78614863 | MS.gene73495:CDS |
| TATGAGCAGTGGTGCTAAAC+TGG | 0.287121 | 5.2:+78615809 | None:intergenic |
| TCCACTATGCTTGGGTTGTA+TGG | 0.297190 | 5.2:-78612708 | MS.gene73495:CDS |
| CGATGTTCTTGCGCTACTTC+TGG | 0.299500 | 5.2:-78614071 | MS.gene73495:intron |
| AAGGAAACTCATGACTTCTT+TGG | 0.319816 | 5.2:+78612748 | None:intergenic |
| CTTGGTAGTCTTGGAGTCAT+TGG | 0.346879 | 5.2:-78613512 | MS.gene73495:CDS |
| CCAAAAGAATTCCACAATAA+AGG | 0.356330 | 5.2:+78614863 | None:intergenic |
| TTTGTTAGACGTTGATGGTT+TGG | 0.364166 | 5.2:-78612485 | MS.gene73495:CDS |
| AGAGCATTTGCTCTTAGATC+TGG | 0.364235 | 5.2:+78615745 | None:intergenic |
| TGAAATAATTCCACTATGCT+TGG | 0.366345 | 5.2:-78612717 | MS.gene73495:CDS |
| CTTCATATGTAGCTCCTCTC+AGG | 0.368501 | 5.2:-78615840 | MS.gene73495:CDS |
| TTGGAATCTTTGAGAATGTC+TGG | 0.372338 | 5.2:+78612198 | None:intergenic |
| TTAAATTACTTGTCGTTTGA+AGG | 0.381214 | 5.2:+78613555 | None:intergenic |
| AGGAATGACATCTTTGTATC+CGG | 0.390087 | 5.2:+78613884 | None:intergenic |
| TCTTGGAGTCATTGGTGCTT+TGG | 0.402629 | 5.2:-78613504 | MS.gene73495:CDS |
| TTACTTGTCGTTTGAAGGAA+TGG | 0.412465 | 5.2:+78613560 | None:intergenic |
| GGTGGGTTCAAGGAATTCTA+AGG | 0.424215 | 5.2:-78611613 | MS.gene73495:intron |
| CTCGTTTGTCTGAACATAGC+AGG | 0.439986 | 5.2:-78612342 | MS.gene73495:intron |
| CACATTCGAGTTGATTGTGT+TGG | 0.440645 | 5.2:+78614094 | None:intergenic |
| GAAATAATTCCACTATGCTT+GGG | 0.444586 | 5.2:-78612716 | MS.gene73495:CDS |
| CATAGTGGAATTATTTCACT+TGG | 0.458939 | 5.2:+78612722 | None:intergenic |
| TGGTTGAGGCTTGGTAGTCT+TGG | 0.464688 | 5.2:-78613521 | MS.gene73495:CDS |
| TGTGTTGGAGTAAGATTTAG+TGG | 0.471165 | 5.2:+78614109 | None:intergenic |
| TGCTCTTCGTGTGCTTTCCA+AGG | 0.477321 | 5.2:-78615728 | MS.gene73495:intron |
| GAATTATTTCACTTGGAAGA+AGG | 0.485164 | 5.2:+78612729 | None:intergenic |
| TAACACAATATGAGTGGTTG+AGG | 0.491507 | 5.2:-78613535 | MS.gene73495:CDS |
| TTCAGGAAGATTCAACAACT+TGG | 0.491745 | 5.2:-78611425 | MS.gene73495:intron |
| GAAAATTGACATTACCATTG+AGG | 0.492991 | 5.2:+78613864 | None:intergenic |
| GTGTCACATAGGTGGGTTCA+AGG | 0.493455 | 5.2:-78611623 | MS.gene73495:CDS |
| AGGAGCTTGCACCTTTATTG+TGG | 0.506558 | 5.2:-78614874 | MS.gene73495:CDS |
| TAAAGAAGTGTCACATAGGT+GGG | 0.529473 | 5.2:-78611630 | MS.gene73495:CDS |
| AGATTTAGTGGTGAAAGAGT+AGG | 0.532575 | 5.2:+78614121 | None:intergenic |
| AACGCCTTGTTATTGAACTT+AGG | 0.532607 | 5.2:-78615771 | MS.gene73495:CDS |
| CAATATGAGTGGTTGAGGCT+TGG | 0.532866 | 5.2:-78613530 | MS.gene73495:CDS |
| GTTGATGGTTTGGCTTATGT+TGG | 0.552096 | 5.2:-78612475 | MS.gene73495:CDS |
| ACAAAGATGTCATTCCTCAA+TGG | 0.552200 | 5.2:-78613878 | MS.gene73495:intron |
| TCCATACAACCCAAGCATAG+TGG | 0.555182 | 5.2:+78612707 | None:intergenic |
| TAGCACCACTGCTCATATGA+TGG | 0.556679 | 5.2:-78615803 | MS.gene73495:CDS |
| GGAATGACATCTTTGTATCC+GGG | 0.558198 | 5.2:+78613885 | None:intergenic |
| AGTCATTGGTGCTTTGGTGA+AGG | 0.559413 | 5.2:-78613498 | MS.gene73495:intron |
| TTAAAGAAGTGTCACATAGG+TGG | 0.578021 | 5.2:-78611631 | MS.gene73495:CDS |
| AGGAAGATTCAACAACTTGG+AGG | 0.584872 | 5.2:-78611422 | MS.gene73495:CDS |
| TTCATATGTAGCTCCTCTCA+GGG | 0.596138 | 5.2:-78615839 | MS.gene73495:CDS |
| ATGAGCAGTGGTGCTAAACT+GGG | 0.605309 | 5.2:+78615810 | None:intergenic |
| GTAATTTAACACAATATGAG+TGG | 0.620131 | 5.2:-78613541 | MS.gene73495:CDS |
| AAATTAAAGAAGTGTCACAT+AGG | 0.625388 | 5.2:-78611634 | MS.gene73495:CDS |
| GTCCACCATCATATGAGCAG+TGG | 0.629949 | 5.2:+78615798 | None:intergenic |
| CACCACTGCTCATATGATGG+TGG | 0.655595 | 5.2:-78615800 | MS.gene73495:CDS |
| GATTCCTAAGTTCAATAACA+AGG | 0.670050 | 5.2:+78615767 | None:intergenic |
| ATAGTGTGTAGCATCTCACC+CGG | 0.679113 | 5.2:-78613903 | MS.gene73495:intron |
| AACTGGGTAGAAGCCCTGAG+AGG | 0.696390 | 5.2:+78615826 | None:intergenic |
| GGGTTGTATGGAAATCGACA+AGG | 0.706182 | 5.2:-78612696 | MS.gene73495:CDS |
| ATTATAAGCTTCAACAAACG+AGG | 0.715153 | 5.2:+78612376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAATATATATTAAAT+TGG | - | chr5.2:78615710-78615729 | MS.gene73495:intron | 0.0% |
| !!! | TTTATATTTTAAATTTTTAT+TGG | + | chr5.2:78615438-78615457 | None:intergenic | 0.0% |
| !! | AAGATCTATAAATATTTAAA+AGG | + | chr5.2:78612532-78612551 | None:intergenic | 10.0% |
| !!! | ATTTTTTAATAATAAATCAG+TGG | + | chr5.2:78615314-78615333 | None:intergenic | 10.0% |
| !!! | GAAACTTTTATATTAAAAAT+TGG | - | chr5.2:78612297-78612316 | MS.gene73495:intron | 10.0% |
| !!! | TATTTTCACAATTAAAAAAA+TGG | - | chr5.2:78612837-78612856 | MS.gene73495:intron | 10.0% |
| !! | AACTTCTTTCATATTAAAAT+AGG | - | chr5.2:78615026-78615045 | MS.gene73495:intron | 15.0% |
| !! | AATTATCATTAATGATATGT+AGG | - | chr5.2:78613522-78613541 | MS.gene73495:CDS | 15.0% |
| !! | AATTCTTTATAATCAGATTT+AGG | - | chr5.2:78613563-78613582 | MS.gene73495:CDS | 15.0% |
| !! | ACTATTTCAGATATTTAAAT+TGG | - | chr5.2:78615759-78615778 | MS.gene73495:CDS | 15.0% |
| !! | ACTTCTTTCATATTAAAATA+GGG | - | chr5.2:78615027-78615046 | MS.gene73495:intron | 15.0% |
| !! | AGTTATCAAATTAAATATTG+TGG | + | chr5.2:78613487-78613506 | None:intergenic | 15.0% |
| !! | ATAAAAAGAGAATATAGTTA+CGG | - | chr5.2:78613875-78613894 | MS.gene73495:intron | 15.0% |
| !! | ATAATAATGTGATAGTTAAT+AGG | - | chr5.2:78612125-78612144 | MS.gene73495:intron | 15.0% |
| !! | ATATATTGAAATTATTTCCT+GGG | + | chr5.2:78613133-78613152 | None:intergenic | 15.0% |
| !! | ATTAAAAAGAAGAAATAGTT+AGG | + | chr5.2:78614394-78614413 | None:intergenic | 15.0% |
| !! | ATTAAATACACATTTCATTT+AGG | - | chr5.2:78615138-78615157 | MS.gene73495:intron | 15.0% |
| !! | ATTCATAAACTAAAAAAAGA+AGG | + | chr5.2:78612728-78612747 | None:intergenic | 15.0% |
| !! | GAAAAATTTACCTTAAAAAT+AGG | - | chr5.2:78612193-78612212 | MS.gene73495:CDS | 15.0% |
| !! | TGACAAATTATAGATAAATA+GGG | + | chr5.2:78614460-78614479 | None:intergenic | 15.0% |
| !! | TTCATAAACTAAAAAAAGAA+GGG | + | chr5.2:78612727-78612746 | None:intergenic | 15.0% |
| !! | TTGACAAATTATAGATAAAT+AGG | + | chr5.2:78614461-78614480 | None:intergenic | 15.0% |
| !!! | AAGTTTTAATGGAAATTATA+AGG | + | chr5.2:78614112-78614131 | None:intergenic | 15.0% |
| !!! | ACTATATTCTCTTTTTATTA+TGG | + | chr5.2:78613873-78613892 | None:intergenic | 15.0% |
| !!! | ATAAGTTTTTGAATTGTATT+TGG | - | chr5.2:78613244-78613263 | MS.gene73495:intron | 15.0% |
| !!! | ATTGACTATTTTAAAGTTTA+TGG | - | chr5.2:78614019-78614038 | MS.gene73495:intron | 15.0% |
| !!! | ATTGTTGATAACAATTTTAA+TGG | - | chr5.2:78614164-78614183 | MS.gene73495:intron | 15.0% |
| !!! | TCATTTTTTATTTGTTTCAT+GGG | - | chr5.2:78611599-78611618 | MS.gene73495:intron | 15.0% |
| !!! | TTCATTTTTTATTTGTTTCA+TGG | - | chr5.2:78611598-78611617 | MS.gene73495:intron | 15.0% |
| !!! | TTCTTTATAGATAACTTTTT+TGG | + | chr5.2:78612173-78612192 | None:intergenic | 15.0% |
| !! | AAAAAAATGGACATGATTAT+GGG | - | chr5.2:78612850-78612869 | MS.gene73495:intron | 20.0% |
| !! | AAAAAACTATTTACTTCTAC+CGG | - | chr5.2:78614060-78614079 | MS.gene73495:intron | 20.0% |
| !! | AAAAATTATCATTCTGCAAT+TGG | - | chr5.2:78612619-78612638 | MS.gene73495:intron | 20.0% |
| !! | AAAACATATTATGACATATC+AGG | + | chr5.2:78615176-78615195 | None:intergenic | 20.0% |
| !! | AAGATGTTTAATCTAGAAAA+AGG | + | chr5.2:78611746-78611765 | None:intergenic | 20.0% |
| !! | ATCAACAATTAATTCATTGT+GGG | + | chr5.2:78614153-78614172 | None:intergenic | 20.0% |
| !! | ATGAGTTTGAAAAACATTAT+AGG | + | chr5.2:78612330-78612349 | None:intergenic | 20.0% |
| !! | GATATATTGAAATTATTTCC+TGG | + | chr5.2:78613134-78613153 | None:intergenic | 20.0% |
| !! | GGAAACACATAAATATAAAT+TGG | + | chr5.2:78612786-78612805 | None:intergenic | 20.0% |
| !! | GTTCTATGAAAATTCATATA+AGG | - | chr5.2:78614303-78614322 | MS.gene73495:intron | 20.0% |
| !! | TAAAAAAATGGACATGATTA+TGG | - | chr5.2:78612849-78612868 | MS.gene73495:intron | 20.0% |
| !! | TATCAACAATTAATTCATTG+TGG | + | chr5.2:78614154-78614173 | None:intergenic | 20.0% |
| !! | TGAATATCATGTATAACAAA+AGG | + | chr5.2:78614496-78614515 | None:intergenic | 20.0% |
| !! | TTGTTTATATGAATTTGACA+TGG | - | chr5.2:78614663-78614682 | MS.gene73495:intron | 20.0% |
| !!! | AAAATGCTCTAAAACTAAAT+TGG | + | chr5.2:78614645-78614664 | None:intergenic | 20.0% |
| !!! | ACATCTTTGGTTTAATTTTT+CGG | - | chr5.2:78611759-78611778 | MS.gene73495:intron | 20.0% |
| !!! | ATTTCCATTAAAACTTTTAG+TGG | - | chr5.2:78614116-78614135 | MS.gene73495:CDS | 20.0% |
| !!! | GATATTGTTTTGATTTTTTC+AGG | - | chr5.2:78615832-78615851 | MS.gene73495:CDS | 20.0% |
| !!! | GTGTGTTTAATAAGTTTTAA+TGG | - | chr5.2:78613841-78613860 | MS.gene73495:intron | 20.0% |
| !!! | TGAAAATTCATATAAGGTTT+TGG | - | chr5.2:78614309-78614328 | MS.gene73495:intron | 20.0% |
| !!! | TTGATAACAATTTTAATGGT+CGG | - | chr5.2:78614168-78614187 | MS.gene73495:intron | 20.0% |
| !!! | TTTATAAATTTTATGCTAGC+AGG | + | chr5.2:78615533-78615552 | None:intergenic | 20.0% |
| !!! | TTTTAAAATAATTGTCCAAG+AGG | - | chr5.2:78612919-78612938 | MS.gene73495:intron | 20.0% |
| !!! | TTTTCCCATTCTTAATATAA+CGG | + | chr5.2:78613606-78613625 | None:intergenic | 20.0% |
| !!! | TTTTCTAGATTAAACATCTT+TGG | - | chr5.2:78611746-78611765 | MS.gene73495:intron | 20.0% |
| ! | AAAAAATGGACATGATTATG+GGG | - | chr5.2:78612851-78612870 | MS.gene73495:intron | 25.0% |
| ! | AAAATGAACAACAAACTGAA+AGG | + | chr5.2:78611586-78611605 | None:intergenic | 25.0% |
| ! | AAACTAAAAAAAGAAGGGAA+AGG | + | chr5.2:78612722-78612741 | None:intergenic | 25.0% |
| ! | ATAAAGTTGTATATCAATGC+AGG | - | chr5.2:78614741-78614760 | MS.gene73495:intron | 25.0% |
| ! | ATGAAGACAATTGATGAAAT+TGG | + | chr5.2:78615098-78615117 | None:intergenic | 25.0% |
| ! | ATGGAAATTATAAGGAATGA+TGG | + | chr5.2:78614104-78614123 | None:intergenic | 25.0% |
| ! | ATGTGATAGTTAATAGGATT+TGG | - | chr5.2:78612131-78612150 | MS.gene73495:intron | 25.0% |
| ! | CAAGAAAGAGATAATTAGAA+AGG | - | chr5.2:78612085-78612104 | MS.gene73495:intron | 25.0% |
| ! | GGTCACATATTTGATTATAT+TGG | - | chr5.2:78615731-78615750 | MS.gene73495:CDS | 25.0% |
| ! | GTAATTTAACACAATATGAG+TGG | - | chr5.2:78613733-78613752 | MS.gene73495:intron | 25.0% |
| ! | GTTCATTAATTAGTGTATCA+CGG | - | chr5.2:78611823-78611842 | MS.gene73495:intron | 25.0% |
| ! | TAGACCGTTATATTAAGAAT+GGG | - | chr5.2:78613599-78613618 | MS.gene73495:intron | 25.0% |
| ! | TATCAATTTACAATTGTACG+AGG | + | chr5.2:78613005-78613024 | None:intergenic | 25.0% |
| ! | TCACATTGAAAAGTAAAAGT+TGG | + | chr5.2:78612807-78612826 | None:intergenic | 25.0% |
| ! | TGTGAAACTAAATTTGACAA+TGG | - | chr5.2:78613924-78613943 | MS.gene73495:intron | 25.0% |
| ! | TTCATTAATTAGTGTATCAC+GGG | - | chr5.2:78611824-78611843 | MS.gene73495:intron | 25.0% |
| ! | TTGTTATACATGATATTCAC+AGG | - | chr5.2:78614497-78614516 | MS.gene73495:intron | 25.0% |
| ! | TTTACCTTAAAAATAGGACT+AGG | - | chr5.2:78612199-78612218 | MS.gene73495:CDS | 25.0% |
| !! | AAAATTTTGTTAGACGTTGA+TGG | - | chr5.2:78614784-78614803 | MS.gene73495:intron | 25.0% |
| !! | ATTAAATCTTGTTTCCTAAC+AGG | + | chr5.2:78612560-78612579 | None:intergenic | 25.0% |
| !! | TTAAATTACTTGTCGTTTGA+AGG | + | chr5.2:78613722-78613741 | None:intergenic | 25.0% |
| !!! | AAATTAAAGAAGTGTCACAT+AGG | - | chr5.2:78615640-78615659 | MS.gene73495:intron | 25.0% |
| !!! | AGTTTAGTTTTGTAAGATCA+AGG | - | chr5.2:78612963-78612982 | MS.gene73495:intron | 25.0% |
| !!! | GGAATTCTAAGGTATTTAAT+TGG | - | chr5.2:78615672-78615691 | MS.gene73495:intron | 25.0% |
| !!! | GTTTAGTTTTGTAAGATCAA+GGG | - | chr5.2:78612964-78612983 | MS.gene73495:intron | 25.0% |
| ACAAGTAAACCAAATCCTTA+GGG | - | chr5.2:78611626-78611645 | MS.gene73495:CDS | 30.0% | |
| AGATCAGTTTATATTCATCG+TGG | - | chr5.2:78614354-78614373 | MS.gene73495:intron | 30.0% | |
| ATAGATCTTTACTACCTGTT+AGG | - | chr5.2:78612543-78612562 | MS.gene73495:intron | 30.0% | |
| ATATGACAAGACCTGTTATA+TGG | - | chr5.2:78615231-78615250 | MS.gene73495:intron | 30.0% | |
| ATTATAAGCTTCAACAAACG+AGG | + | chr5.2:78614901-78614920 | None:intergenic | 30.0% | |
| CCAAAAGAATTCCACAATAA+AGG | + | chr5.2:78612414-78612433 | None:intergenic | 30.0% | |
| CTAAACTATGCAACTTAGAT+CGG | + | chr5.2:78612239-78612258 | None:intergenic | 30.0% | |
| GAAAATTGACATTACCATTG+AGG | + | chr5.2:78613413-78613432 | None:intergenic | 30.0% | |
| GAAATAATTCCACTATGCTT+GGG | - | chr5.2:78614558-78614577 | MS.gene73495:intron | 30.0% | |
| GAATTATTTCACTTGGAAGA+AGG | + | chr5.2:78614548-78614567 | None:intergenic | 30.0% | |
| GATCAGTTTATATTCATCGT+GGG | - | chr5.2:78614355-78614374 | MS.gene73495:intron | 30.0% | |
| GATTCCTAAGTTCAATAACA+AGG | + | chr5.2:78611510-78611529 | None:intergenic | 30.0% | |
| GTAGACCGTTATATTAAGAA+TGG | - | chr5.2:78613598-78613617 | MS.gene73495:intron | 30.0% | |
| TAAGTTTAGTGTTACACTTG+CGG | - | chr5.2:78615370-78615389 | MS.gene73495:intron | 30.0% | |
| TGAAATAATTCCACTATGCT+TGG | - | chr5.2:78614557-78614576 | MS.gene73495:intron | 30.0% | |
| TGCATGTGTCTTACTTATAT+TGG | - | chr5.2:78612593-78612612 | MS.gene73495:intron | 30.0% | |
| TGGCAAAACAACAATAATAG+AGG | + | chr5.2:78614625-78614644 | None:intergenic | 30.0% | |
| TTGAATCTATGTTGACATAG+AGG | + | chr5.2:78611693-78611712 | None:intergenic | 30.0% | |
| ! | CAATGGCTATTAGTTTAGAA+GGG | - | chr5.2:78615335-78615354 | MS.gene73495:intron | 30.0% |
| ! | CATAGTGGAATTATTTCACT+TGG | + | chr5.2:78614555-78614574 | None:intergenic | 30.0% |
| ! | CCTTTATTGTGGAATTCTTT+TGG | - | chr5.2:78612411-78612430 | MS.gene73495:CDS | 30.0% |
| ! | TCAATGGCTATTAGTTTAGA+AGG | - | chr5.2:78615334-78615353 | MS.gene73495:intron | 30.0% |
| ! | TTGCACATTTTTATGCTTCT+TGG | + | chr5.2:78612068-78612087 | None:intergenic | 30.0% |
| ! | TTTTATGAACTTGTGTTAGC+TGG | - | chr5.2:78611963-78611982 | MS.gene73495:intron | 30.0% |
| !! | AGCACCACTAAAAGTTTTAA+TGG | + | chr5.2:78614123-78614142 | None:intergenic | 30.0% |
| !! | AGTCTTGTTTGAATATGAAG+AGG | - | chr5.2:78615610-78615629 | MS.gene73495:intron | 30.0% |
| !!! | TGATCCTAGTCCTATTTTTA+AGG | + | chr5.2:78612206-78612225 | None:intergenic | 30.0% |
| AAGGAAACTCATGACTTCTT+TGG | + | chr5.2:78614529-78614548 | None:intergenic | 35.0% | |
| ACAAAGATGTCATTCCTCAA+TGG | - | chr5.2:78613396-78613415 | MS.gene73495:intron | 35.0% | |
| ACACTTGCGGTATTTGTATA+GGG | - | chr5.2:78615383-78615402 | MS.gene73495:intron | 35.0% | |
| AGATTTAGTGGTGAAAGAGT+AGG | + | chr5.2:78613156-78613175 | None:intergenic | 35.0% | |
| AGGAATGACATCTTTGTATC+CGG | + | chr5.2:78613393-78613412 | None:intergenic | 35.0% | |
| AGGTAGATTAGTAAGAACCT+TGG | + | chr5.2:78611566-78611585 | None:intergenic | 35.0% | |
| AGTTGTATATCAATGCAGGT+TGG | - | chr5.2:78614745-78614764 | MS.gene73495:intron | 35.0% | |
| ATATAAGTGCATGTTAGCTG+CGG | + | chr5.2:78613688-78613707 | None:intergenic | 35.0% | |
| ATTTCAGATGACGTCATTTC+AGG | - | chr5.2:78612380-78612399 | MS.gene73495:CDS | 35.0% | |
| CACAAGTAAACCAAATCCTT+AGG | - | chr5.2:78611625-78611644 | MS.gene73495:CDS | 35.0% | |
| GCATGATACACAAATCCATT+AGG | + | chr5.2:78615275-78615294 | None:intergenic | 35.0% | |
| GTAAATGCATGTGTAATTGC+CGG | + | chr5.2:78614082-78614101 | None:intergenic | 35.0% | |
| GTCTTCATGTAAGTACTTCT+TGG | - | chr5.2:78615110-78615129 | MS.gene73495:intron | 35.0% | |
| TAACACAATATGAGTGGTTG+AGG | - | chr5.2:78613739-78613758 | MS.gene73495:intron | 35.0% | |
| TACACTTGCGGTATTTGTAT+AGG | - | chr5.2:78615382-78615401 | MS.gene73495:intron | 35.0% | |
| TGTGTTGGAGTAAGATTTAG+TGG | + | chr5.2:78613168-78613187 | None:intergenic | 35.0% | |
| TTCAGGAAGATTCAACAACT+TGG | - | chr5.2:78615849-78615868 | MS.gene73495:CDS | 35.0% | |
| TTTCAATCTGATTGTGCTCT+TGG | - | chr5.2:78614245-78614264 | MS.gene73495:intron | 35.0% | |
| ! | CGAGTAATGATATTTTTCCC+AGG | - | chr5.2:78613113-78613132 | MS.gene73495:intron | 35.0% |
| ! | GAAAAATATGCTGGTAGTGT+GGG | - | chr5.2:78612643-78612662 | MS.gene73495:intron | 35.0% |
| ! | GAGGAACTAACAGATTTTGA+TGG | + | chr5.2:78614606-78614625 | None:intergenic | 35.0% |
| ! | TTACTTGTCGTTTGAAGGAA+TGG | + | chr5.2:78613717-78613736 | None:intergenic | 35.0% |
| ! | TTGGAATCTTTGAGAATGTC+TGG | + | chr5.2:78615079-78615098 | None:intergenic | 35.0% |
| ! | TTTTAGCCACTGTCCTTTAT+CGG | - | chr5.2:78612672-78612691 | MS.gene73495:intron | 35.0% |
| !! | AACGCCTTGTTATTGAACTT+AGG | - | chr5.2:78611503-78611522 | MS.gene73495:intron | 35.0% |
| !! | ATATGAGAGAAGAGTGTTAG+AGG | + | chr5.2:78613344-78613363 | None:intergenic | 35.0% |
| !! | ATTTTAATGGTCGGTTGAGT+TGG | - | chr5.2:78614177-78614196 | MS.gene73495:intron | 35.0% |
| !! | CTTTTAGGTACACAACCTAA+TGG | - | chr5.2:78615257-78615276 | MS.gene73495:intron | 35.0% |
| !! | TAAAGAAGTGTCACATAGGT+GGG | - | chr5.2:78615644-78615663 | MS.gene73495:intron | 35.0% |
| !! | TGAAGGTATTACATCTTTGC+TGG | - | chr5.2:78613793-78613812 | MS.gene73495:intron | 35.0% |
| !! | TTAAAGAAGTGTCACATAGG+TGG | - | chr5.2:78615643-78615662 | MS.gene73495:intron | 35.0% |
| !! | TTTGTTAGACGTTGATGGTT+TGG | - | chr5.2:78614789-78614808 | MS.gene73495:intron | 35.0% |
| AAATGGACATGATTATGGGG+AGG | - | chr5.2:78612854-78612873 | MS.gene73495:intron | 40.0% | |
| AATGGACATGATTATGGGGA+GGG | - | chr5.2:78612855-78612874 | MS.gene73495:intron | 40.0% | |
| AGGAAGATTCAACAACTTGG+AGG | - | chr5.2:78615852-78615871 | MS.gene73495:CDS | 40.0% | |
| ATCACAACTCCCTAAGGATT+TGG | + | chr5.2:78611638-78611657 | None:intergenic | 40.0% | |
| ATTGATGAGCTAGTACCTCT+TGG | + | chr5.2:78612937-78612956 | None:intergenic | 40.0% | |
| CAAGATACTAACGCACAGAA+AGG | + | chr5.2:78612499-78612518 | None:intergenic | 40.0% | |
| CACTTGCGGTATTTGTATAG+GGG | - | chr5.2:78615384-78615403 | MS.gene73495:intron | 40.0% | |
| CCTAAAAGCCACCATATAAC+AGG | + | chr5.2:78615245-78615264 | None:intergenic | 40.0% | |
| GATTTGGATGAAAGCGACAA+TGG | - | chr5.2:78612147-78612166 | MS.gene73495:intron | 40.0% | |
| GCAATTGGCGAAAAATATGC+TGG | - | chr5.2:78612634-78612653 | MS.gene73495:intron | 40.0% | |
| GGAAAGGATGATAGTTACGA+AGG | + | chr5.2:78612706-78612725 | None:intergenic | 40.0% | |
| GGAATGACATCTTTGTATCC+GGG | + | chr5.2:78613392-78613411 | None:intergenic | 40.0% | |
| TGACAAGACCTGTTATATGG+TGG | - | chr5.2:78615234-78615253 | MS.gene73495:intron | 40.0% | |
| TTCATATGTAGCTCCTCTCA+GGG | - | chr5.2:78611435-78611454 | MS.gene73495:intron | 40.0% | |
| TTTGTCTGAACATAGCAGGT+TGG | - | chr5.2:78614936-78614955 | MS.gene73495:intron | 40.0% | |
| ! | AGAGCATTTGCTCTTAGATC+TGG | + | chr5.2:78611532-78611551 | None:intergenic | 40.0% |
| ! | CCTGTTATATGGTGGCTTTT+AGG | - | chr5.2:78615242-78615261 | MS.gene73495:intron | 40.0% |
| ! | CGAAAAATATGCTGGTAGTG+TGG | - | chr5.2:78612642-78612661 | MS.gene73495:intron | 40.0% |
| ! | TAGAGTATCACAACTCCCTA+AGG | + | chr5.2:78611644-78611663 | None:intergenic | 40.0% |
| !! | CACATTCGAGTTGATTGTGT+TGG | + | chr5.2:78613183-78613202 | None:intergenic | 40.0% |
| !! | GTTGATGGTTTGGCTTATGT+TGG | - | chr5.2:78614799-78614818 | MS.gene73495:intron | 40.0% |
| AGGAGCTTGCACCTTTATTG+TGG | - | chr5.2:78612400-78612419 | MS.gene73495:CDS | 45.0% | |
| ATAGTGTGTAGCATCTCACC+CGG | - | chr5.2:78613371-78613390 | MS.gene73495:intron | 45.0% | |
| CAATATGAGTGGTTGAGGCT+TGG | - | chr5.2:78613744-78613763 | MS.gene73495:intron | 45.0% | |
| CTCGTTTGTCTGAACATAGC+AGG | - | chr5.2:78614932-78614951 | MS.gene73495:intron | 45.0% | |
| CTTCATATGTAGCTCCTCTC+AGG | - | chr5.2:78611434-78611453 | MS.gene73495:intron | 45.0% | |
| GGGTTGTATGGAAATCGACA+AGG | - | chr5.2:78614578-78614597 | MS.gene73495:intron | 45.0% | |
| TAGCACCACTGCTCATATGA+TGG | - | chr5.2:78611471-78611490 | MS.gene73495:intron | 45.0% | |
| TCCATACAACCCAAGCATAG+TGG | + | chr5.2:78614570-78614589 | None:intergenic | 45.0% | |
| TGTCATCCGATAAAGGACAG+TGG | + | chr5.2:78612681-78612700 | None:intergenic | 45.0% | |
| ! | AGTCATTGGTGCTTTGGTGA+AGG | - | chr5.2:78613776-78613795 | MS.gene73495:intron | 45.0% |
| ! | ATGAGCAGTGGTGCTAAACT+GGG | + | chr5.2:78611467-78611486 | None:intergenic | 45.0% |
| ! | CTTGGTAGTCTTGGAGTCAT+TGG | - | chr5.2:78613762-78613781 | MS.gene73495:intron | 45.0% |
| ! | GGTGGGTTCAAGGAATTCTA+AGG | - | chr5.2:78615661-78615680 | MS.gene73495:intron | 45.0% |
| ! | TATGAGCAGTGGTGCTAAAC+TGG | + | chr5.2:78611468-78611487 | None:intergenic | 45.0% |
| ! | TCCACTATGCTTGGGTTGTA+TGG | - | chr5.2:78614566-78614585 | MS.gene73495:intron | 45.0% |
| ! | TCTTGGAGTCATTGGTGCTT+TGG | - | chr5.2:78613770-78613789 | MS.gene73495:intron | 45.0% |
| !! | GAAGGAGTGTCATCCGATAA+AGG | + | chr5.2:78612688-78612707 | None:intergenic | 45.0% |
| !! | ATTATAAAGAATTAATAATT+AGG | + | chr5.2:78613556-78613575 | None:intergenic | 5.0% |
| !! | TTATAAAGAATTAATAATTA+GGG | + | chr5.2:78613555-78613574 | None:intergenic | 5.0% |
| !! | TTTATTATTAAAAAATTCAA+TGG | - | chr5.2:78615318-78615337 | MS.gene73495:intron | 5.0% |
| !!! | TTTATAAATTTTATTATGTT+TGG | - | chr5.2:78615545-78615564 | MS.gene73495:intron | 5.0% |
| CACCACTGCTCATATGATGG+TGG | - | chr5.2:78611474-78611493 | MS.gene73495:intron | 50.0% | |
| CGATGTTCTTGCGCTACTTC+TGG | - | chr5.2:78613203-78613222 | MS.gene73495:intron | 50.0% | |
| GTCCACCATCATATGAGCAG+TGG | + | chr5.2:78611479-78611498 | None:intergenic | 50.0% | |
| TGCTCTTCGTGTGCTTTCCA+AGG | - | chr5.2:78611546-78611565 | MS.gene73495:intron | 50.0% | |
| ! | GTGTCACATAGGTGGGTTCA+AGG | - | chr5.2:78615651-78615670 | MS.gene73495:intron | 50.0% |
| ! | TGGTTGAGGCTTGGTAGTCT+TGG | - | chr5.2:78613753-78613772 | MS.gene73495:intron | 50.0% |
| AACTGGGTAGAAGCCCTGAG+AGG | + | chr5.2:78611451-78611470 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 78611415 | 78615881 | 78611415 | ID=MS.gene73495 |
| chr5.2 | mRNA | 78611415 | 78615881 | 78611415 | ID=MS.gene73495.t1;Parent=MS.gene73495 |
| chr5.2 | exon | 78615729 | 78615881 | 78615729 | ID=MS.gene73495.t1.exon1;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78615729 | 78615881 | 78615729 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78615215 | 78615226 | 78615215 | ID=MS.gene73495.t1.exon2;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78615215 | 78615226 | 78615215 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78614841 | 78614909 | 78614841 | ID=MS.gene73495.t1.exon3;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78614841 | 78614909 | 78614841 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78614072 | 78614161 | 78614072 | ID=MS.gene73495.t1.exon4;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78614072 | 78614161 | 78614072 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78613879 | 78613921 | 78613879 | ID=MS.gene73495.t1.exon5;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78613879 | 78613921 | 78613879 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78613499 | 78613605 | 78613499 | ID=MS.gene73495.t1.exon6;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78613499 | 78613605 | 78613499 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78612682 | 78612777 | 78612682 | ID=MS.gene73495.t1.exon7;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78612682 | 78612777 | 78612682 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78612343 | 78612533 | 78612343 | ID=MS.gene73495.t1.exon8;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78612343 | 78612533 | 78612343 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78612179 | 78612248 | 78612179 | ID=MS.gene73495.t1.exon9;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78612179 | 78612248 | 78612179 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78611614 | 78611666 | 78611614 | ID=MS.gene73495.t1.exon10;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78611614 | 78611666 | 78611614 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| chr5.2 | exon | 78611415 | 78611442 | 78611415 | ID=MS.gene73495.t1.exon11;Parent=MS.gene73495.t1 |
| chr5.2 | CDS | 78611415 | 78611442 | 78611415 | ID=cds.MS.gene73495.t1;Parent=MS.gene73495.t1 |
| Gene Sequence |
| Protein sequence |
