AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73609

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73609.t1 MTR_7g026400 86.364 374 42 2 1 366 69 441 0.0 606
MS.gene73609.t1 MTR_0450s0040 48.173 301 114 6 1 300 86 345 1.78e-74 234
MS.gene73609.t1 MTR_4g121020 35.220 159 89 2 1 145 9 167 8.98e-25 106
MS.gene73609.t1 MTR_4g121020 35.220 159 89 2 1 145 113 271 1.54e-24 105
MS.gene73609.t1 MTR_4g121020 35.220 159 89 2 1 145 113 271 1.56e-24 105
MS.gene73609.t1 MTR_6g088950 61.111 90 33 2 1 88 86 175 1.98e-24 99.8
MS.gene73609.t1 MTR_2g034960 38.854 157 84 4 1 145 111 267 2.33e-24 105
MS.gene73609.t1 MTR_1g032570 31.771 192 106 5 1 168 24 214 4.06e-23 101
MS.gene73609.t1 MTR_4g021760 34.524 168 97 4 1 166 92 248 7.17e-23 97.8
MS.gene73609.t1 MTR_1g032570 31.771 192 106 5 1 168 93 283 1.00e-22 100
MS.gene73609.t1 MTR_8g079940 33.155 187 107 5 1 169 107 293 1.25e-22 99.8
MS.gene73609.t1 MTR_3g086100 33.152 184 103 4 1 164 24 207 2.14e-22 99.0
MS.gene73609.t1 MTR_3g086100 33.152 184 103 4 1 164 95 278 5.15e-22 97.8
MS.gene73609.t1 MTR_1g013170 33.728 169 82 3 2 147 88 249 5.97e-22 97.4
MS.gene73609.t1 MTR_4g021855 36.242 149 76 2 1 145 91 224 1.40e-21 94.0
MS.gene73609.t1 MTR_3g106220 37.267 161 77 4 9 147 98 256 1.89e-21 96.3
MS.gene73609.t1 MTR_7g117705 32.632 190 92 5 2 167 89 266 4.16e-21 94.7
MS.gene73609.t1 MTR_4g021790 35.570 149 77 2 1 145 91 224 6.25e-21 91.7
MS.gene73609.t1 MTR_4g021845 35.211 142 73 2 1 138 91 217 8.31e-21 90.1
MS.gene73609.t1 MTR_2g450070 33.146 178 88 5 8 156 107 282 2.57e-20 93.2
MS.gene73609.t1 MTR_2g450070 33.146 178 88 5 8 156 107 282 3.28e-20 92.8
MS.gene73609.t1 MTR_4g131600 32.941 170 90 3 10 155 111 280 7.73e-19 88.6
MS.gene73609.t1 MTR_1g013180 34.132 167 80 3 2 145 239 398 1.77e-18 87.4
MS.gene73609.t1 MTR_4g131580 34.899 149 84 2 10 145 108 256 1.82e-18 87.4
MS.gene73609.t1 MTR_3g102590 32.867 143 60 2 1 143 91 197 2.79e-18 83.6
MS.gene73609.t1 MTR_6g089050 60.317 63 25 0 1 63 32 94 5.19e-18 80.9
MS.gene73609.t1 MTR_3g102600 29.139 151 61 2 1 151 41 145 6.87e-18 80.9
MS.gene73609.t1 MTR_6g045327 33.540 161 75 3 1 151 96 234 8.03e-18 84.3
MS.gene73609.t1 MTR_4g064730 42.222 90 45 2 66 148 101 190 1.32e-17 83.2
MS.gene73609.t1 MTR_3g102600 29.139 151 61 2 1 151 90 194 1.82e-17 80.9
MS.gene73609.t1 MTR_7g089010 47.826 69 36 0 80 148 82 150 2.89e-17 81.6
MS.gene73609.t1 MTR_4g131570 33.553 152 85 3 10 145 108 259 1.00e-16 82.0
MS.gene73609.t1 MTR_3g102590 31.159 138 59 2 1 138 91 192 1.45e-15 75.1
MS.gene73609.t1 MTR_0054s0010 55.556 63 28 0 1 63 21 83 2.85e-15 73.2
MS.gene73609.t1 MTR_4g078810 57.407 54 23 0 88 141 157 210 1.94e-14 74.7
MS.gene73609.t1 MTR_2g090675 41.111 90 52 1 52 141 125 213 4.91e-14 73.6
MS.gene73609.t1 MTR_5g014040 50.000 60 30 0 88 147 310 369 1.61e-13 72.0
MS.gene73609.t1 MTR_4g098870 47.619 63 33 0 88 150 309 371 1.91e-13 72.0
MS.gene73609.t1 MTR_4g098870 48.333 60 31 0 88 147 329 388 2.03e-13 72.0
MS.gene73609.t1 MTR_4g098870 47.619 63 33 0 88 150 309 371 2.10e-13 72.0
MS.gene73609.t1 MTR_4g098870 47.619 63 33 0 88 150 348 410 2.33e-13 71.6
MS.gene73609.t1 MTR_4g098870 48.333 60 31 0 88 147 329 388 2.34e-13 71.6
MS.gene73609.t1 MTR_3g102600 27.143 140 56 2 1 140 41 134 4.11e-13 66.6
MS.gene73609.t1 MTR_3g102600 27.143 140 56 2 1 140 90 183 8.68e-13 67.0
MS.gene73609.t1 MTR_8g105600 29.448 163 85 3 1 144 91 242 4.64e-12 67.8
MS.gene73609.t1 MTR_5g014040 46.154 65 30 1 88 147 270 334 1.47e-11 66.2
MS.gene73609.t1 MTR_5g014040 46.154 65 30 1 88 147 310 374 1.68e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73609.t1 AT3G16857 34.555 191 85 4 1 157 45 229 5.04e-26 110
MS.gene73609.t1 AT3G16857 34.555 191 85 4 1 157 115 299 9.07e-26 109
MS.gene73609.t1 AT3G16857 34.555 191 85 4 1 157 115 299 1.13e-25 109
MS.gene73609.t1 AT5G07210 53.465 101 44 1 68 165 206 306 5.41e-24 103
MS.gene73609.t1 AT5G07210 53.465 101 44 1 68 165 198 298 5.43e-24 103
MS.gene73609.t1 AT4G31920 33.553 152 101 0 1 152 95 246 7.21e-22 97.4
MS.gene73609.t1 AT2G01760 35.329 167 86 3 1 145 25 191 1.70e-21 94.4
MS.gene73609.t1 AT2G01760 35.329 167 86 3 1 145 90 256 6.75e-21 93.6
MS.gene73609.t1 AT2G25180 35.220 159 91 2 1 147 95 253 1.16e-20 94.0
MS.gene73609.t1 AT2G01760 35.329 167 86 3 1 145 118 284 1.41e-20 92.8
MS.gene73609.t1 AT2G27070 42.857 133 72 2 37 165 169 301 2.55e-20 92.8
MS.gene73609.t1 AT5G58080 30.851 188 104 4 10 179 104 283 5.85e-20 92.0
MS.gene73609.t1 AT5G49240 33.121 157 82 3 1 138 120 272 2.53e-18 84.7
MS.gene73609.t1 AT5G59570 36.283 113 61 2 47 148 88 200 1.06e-17 83.2
MS.gene73609.t1 AT5G59570 36.283 113 61 2 47 148 88 200 1.06e-17 83.2
MS.gene73609.t1 AT3G10760 44.595 74 41 0 75 148 91 164 1.07e-17 83.6
MS.gene73609.t1 AT1G67710 33.898 177 96 5 1 156 24 200 2.10e-17 84.0
MS.gene73609.t1 AT1G67710 33.898 177 96 5 1 156 15 191 2.10e-17 84.0
MS.gene73609.t1 AT5G05090 46.377 69 37 0 77 145 69 137 2.75e-17 81.3
MS.gene73609.t1 AT1G67710 33.898 177 96 5 1 156 89 265 2.82e-17 83.6
MS.gene73609.t1 AT2G40970 47.826 69 36 0 80 148 96 164 3.51e-17 80.9
MS.gene73609.t1 AT3G46640 46.479 71 36 1 80 148 133 203 3.92e-17 82.0
MS.gene73609.t1 AT3G46640 46.479 71 36 1 80 148 133 203 3.92e-17 82.0
MS.gene73609.t1 AT3G46640 46.479 71 36 1 80 148 133 203 6.50e-17 81.3
MS.gene73609.t1 AT5G44190 59.016 61 23 1 81 141 141 199 6.08e-16 79.0
MS.gene73609.t1 AT5G44190 59.016 61 23 1 81 141 141 199 6.43e-16 78.6
MS.gene73609.t1 AT2G20570 55.556 54 24 0 88 141 152 205 9.87e-14 72.4
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.16e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.16e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.16e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.16e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.16e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.16e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.48e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.48e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.48e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.48e-13 71.6
MS.gene73609.t1 AT4G18020 42.105 76 41 1 89 164 296 368 2.48e-13 71.6
MS.gene73609.t1 AT2G20570 56.863 51 22 0 91 141 171 221 4.48e-13 70.5

Find 62 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAAGACTTCAAAGATAT+TGG 0.226006 7.1:+70463982 MS.gene73609:CDS
GAACTATGAACAATGGATTA+AGG 0.243060 7.1:+70465795 MS.gene73609:CDS
TATGCCAGTGTTTGCAAATA+TGG 0.272397 7.1:-70465311 None:intergenic
AAATGTAGCAAGTCACTTAC+AGG 0.277878 7.1:+70464969 MS.gene73609:CDS
CAACATGATGTGTTGGAAAT+TGG 0.289454 7.1:-70465373 None:intergenic
ATCTCAAAGACGCTAGAAAA+TGG 0.291584 7.1:+70463928 MS.gene73609:CDS
CTGCTTGCTATTGACCAAAT+TGG 0.292299 7.1:+70464207 MS.gene73609:CDS
TTTGGAATTCAGCTGAATAA+TGG 0.295030 7.1:+70465752 MS.gene73609:CDS
GTAAGAAATAACAATCCTTT+TGG 0.299725 7.1:+70465734 MS.gene73609:CDS
ACTTACTTTCCAATCCAATT+TGG 0.301438 7.1:-70464221 None:intergenic
TCTTGAAGAGCCAGCCCTTT+TGG 0.305451 7.1:-70465413 None:intergenic
TTAAGAAACAAAAGCTTGTT+TGG 0.309580 7.1:+70464160 MS.gene73609:CDS
GATATTAGAAACCAAAATTA+TGG 0.315005 7.1:+70465668 MS.gene73609:CDS
AGGGCTGGCTCTTCAAGATT+TGG 0.319081 7.1:+70465418 MS.gene73609:CDS
TTGAAGTCTTCAGCACAAAA+AGG 0.324880 7.1:-70463973 None:intergenic
TTCAAGATTTGGAACAAGTT+AGG 0.330501 7.1:+70465429 MS.gene73609:CDS
GGCTGTGCCAAAGAAAATTC+TGG 0.364480 7.1:+70464915 MS.gene73609:CDS
AACTATGAACAATGGATTAA+GGG 0.373260 7.1:+70465796 MS.gene73609:CDS
CTGAAGACTTCAAAGATATT+GGG 0.389220 7.1:+70463983 MS.gene73609:CDS
AGCTATGATCAAAACAGGTT+TGG 0.409010 7.1:+70465497 MS.gene73609:CDS
GGAGCAGGAATGGTTGGAAT+TGG 0.414917 7.1:+70465773 MS.gene73609:CDS
AGTGCAAATAACAATGAAAC+GGG 0.416165 7.1:+70465824 MS.gene73609:CDS
TAGAGCTGAACAAGGATTGA+TGG 0.418771 7.1:+70465598 MS.gene73609:CDS
GTGTTGGAAATTGGTTGAAA+TGG 0.423793 7.1:-70465364 None:intergenic
AGATATTGGGAAATATGTTA+TGG 0.426061 7.1:+70463996 MS.gene73609:CDS
CTGCGAGATGTTGAAGAGAA+AGG 0.429447 7.1:+70465170 MS.gene73609:CDS
ATAACAGCTATGATCAAAAC+AGG 0.431496 7.1:+70465492 MS.gene73609:CDS
TGCTATTGACCAAATTGGAT+TGG 0.439605 7.1:+70464212 MS.gene73609:CDS
CAATTTCCTTATATACCAAA+AGG 0.442391 7.1:+70465398 MS.gene73609:CDS
CAGTTATGTCTGAAGACAAT+AGG 0.455126 7.1:+70463896 None:intergenic
TCCTTATATACCAAAAGGGC+TGG 0.465144 7.1:+70465403 MS.gene73609:CDS
AGCGTCTTTGAGATTAAACT+TGG 0.469430 7.1:-70463919 None:intergenic
ACATCAGAAGTAAATTTATG+AGG 0.469959 7.1:-70465713 None:intergenic
CTTCTTCAAGTTTCTTAACA+AGG 0.470322 7.1:+70465630 MS.gene73609:CDS
TAGTGCAAATAACAATGAAA+CGG 0.476245 7.1:+70465823 MS.gene73609:CDS
GATTTGGAACAAGTTAGGCT+TGG 0.484973 7.1:+70465434 MS.gene73609:CDS
GTTGAAGAGAAAGGAATGGT+TGG 0.491902 7.1:+70465179 MS.gene73609:CDS
CTTGAATATCTCTCTCTCCT+TGG 0.495918 7.1:-70464134 None:intergenic
TAGGCTTGGAAAATCAAAGT+TGG 0.508790 7.1:+70465448 MS.gene73609:CDS
CTCACAGAGCTCTAAGATCA+AGG 0.512314 7.1:+70465210 MS.gene73609:CDS
ACAATGAAACGGGGAGGGAG+TGG 0.514140 7.1:+70465834 MS.gene73609:CDS
AATAATGGAGCAGGAATGGT+TGG 0.529804 7.1:+70465767 MS.gene73609:CDS
TTCTTCAAGTTTCTTAACAA+GGG 0.536372 7.1:+70465631 MS.gene73609:CDS
GCTGAATAATGGAGCAGGAA+TGG 0.538668 7.1:+70465763 MS.gene73609:CDS
ATTCAGCTGAATAATGGAGC+AGG 0.542016 7.1:+70465758 MS.gene73609:CDS
TTATTCAGCTGAATTCCAAA+AGG 0.546390 7.1:-70465749 None:intergenic
AATTTCCTTATATACCAAAA+GGG 0.555747 7.1:+70465399 MS.gene73609:CDS
GAAGAGAAAGGAATGGTTGG+AGG 0.566539 7.1:+70465182 MS.gene73609:CDS
AATTGGTCAACATGATGTGT+TGG 0.569003 7.1:-70465380 None:intergenic
ACTTCCATATTTGCAAACAC+TGG 0.582579 7.1:+70465307 MS.gene73609:CDS
GGAATTGGAACTATGAACAA+TGG 0.591999 7.1:+70465788 MS.gene73609:CDS
GTTATTCTCTGCAACAACAT+CGG 0.600928 7.1:-70465474 None:intergenic
TCTATATGATGAAAAGCTAG+TGG 0.601942 7.1:-70465579 None:intergenic
AGAAAGAGTAAAGAATGCCA+AGG 0.604346 7.1:+70464117 MS.gene73609:CDS
TCATCATATAGAGCTGAACA+AGG 0.608032 7.1:+70465590 MS.gene73609:CDS
ATTTCTCTTATCATAGACAT+CGG 0.611317 7.1:-70465248 None:intergenic
GTTTGCAAATATGGAAGTGT+TGG 0.612895 7.1:-70465302 None:intergenic
ACACTGGCATATCAAACAAG+AGG 0.654807 7.1:+70465323 MS.gene73609:CDS
AGATGTTGAAGAGAAAGGAA+TGG 0.660542 7.1:+70465175 MS.gene73609:CDS
CAAATAACAATGAAACGGGG+AGG 0.675066 7.1:+70465828 MS.gene73609:CDS
AAATAACAATGAAACGGGGA+GGG 0.679481 7.1:+70465829 MS.gene73609:CDS
GTGCAAATAACAATGAAACG+GGG 0.779545 7.1:+70465825 MS.gene73609:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAAAATTTGGATAAT+AGG - chr7.1:70464782-70464801 None:intergenic 10.0%
!! ATGATGATATTATAATATTA+TGG - chr7.1:70465024-70465043 None:intergenic 10.0%
!! TGTGTATTAATATTAAAATT+TGG - chr7.1:70464790-70464809 None:intergenic 10.0%
!!! ATCTTTTAAAAATATTTGAA+AGG + chr7.1:70464245-70464264 MS.gene73609:intron 10.0%
!! AACAATTTAGTAATTTACAT+AGG + chr7.1:70464626-70464645 MS.gene73609:intron 15.0%
!! TGTTATTAGTATATTTACTT+AGG - chr7.1:70464610-70464629 None:intergenic 15.0%
!!! ATTTTACAGTGATATTATAA+TGG + chr7.1:70464469-70464488 MS.gene73609:intron 15.0%
!! AATTTCCTTATATACCAAAA+GGG + chr7.1:70465399-70465418 MS.gene73609:CDS 20.0%
!! ATATCACTGTAAAATAATAG+CGG - chr7.1:70464464-70464483 None:intergenic 20.0%
!! GATATTAGAAACCAAAATTA+TGG + chr7.1:70465668-70465687 MS.gene73609:CDS 20.0%
!!! TTAACAAGGGATTTTAAATT+TGG + chr7.1:70465644-70465663 MS.gene73609:CDS 20.0%
! ACATCAGAAGTAAATTTATG+AGG - chr7.1:70465716-70465735 None:intergenic 25.0%
! AGATATTGGGAAATATGTTA+TGG + chr7.1:70463996-70464015 MS.gene73609:CDS 25.0%
! AGTTAAAATCCCATATGATA+TGG - chr7.1:70464506-70464525 None:intergenic 25.0%
! ATTTCTCTTATCATAGACAT+CGG - chr7.1:70465251-70465270 None:intergenic 25.0%
! ATTTGACAACCATATCATAT+GGG + chr7.1:70464494-70464513 MS.gene73609:intron 25.0%
! CAATTTCCTTATATACCAAA+AGG + chr7.1:70465398-70465417 MS.gene73609:CDS 25.0%
! TAGTGCAAATAACAATGAAA+CGG + chr7.1:70465823-70465842 MS.gene73609:CDS 25.0%
!! CTTTTGGTATATAAGGAAAT+TGG - chr7.1:70465400-70465419 None:intergenic 25.0%
!! GTAAGAAATAACAATCCTTT+TGG + chr7.1:70465734-70465753 MS.gene73609:CDS 25.0%
!! TGCTTTTAACACCATAATTT+TGG - chr7.1:70465682-70465701 None:intergenic 25.0%
!! TTAAGAAACAAAAGCTTGTT+TGG + chr7.1:70464160-70464179 MS.gene73609:CDS 25.0%
!! TTATCTTTTCCCTAATTTAG+AGG + chr7.1:70464894-70464913 MS.gene73609:intron 25.0%
!! TTCTTCAAGTTTCTTAACAA+GGG + chr7.1:70465631-70465650 MS.gene73609:CDS 25.0%
!!! AACTATGAACAATGGATTAA+GGG + chr7.1:70465796-70465815 MS.gene73609:CDS 25.0%
!!! GATAATAGGTAGTTTGTTTT+TGG - chr7.1:70464768-70464787 None:intergenic 25.0%
AAAATGGCTCAACCAATTAA+TGG - chr7.1:70464329-70464348 None:intergenic 30.0%
ACACCACTATCATTGTTTAT+AGG + chr7.1:70464584-70464603 MS.gene73609:intron 30.0%
ACTTACTTTCCAATCCAATT+TGG - chr7.1:70464224-70464243 None:intergenic 30.0%
AGTGCAAATAACAATGAAAC+GGG + chr7.1:70465824-70465843 MS.gene73609:CDS 30.0%
ATAACAGCTATGATCAAAAC+AGG + chr7.1:70465492-70465511 MS.gene73609:CDS 30.0%
CATTTGACAACCATATCATA+TGG + chr7.1:70464493-70464512 MS.gene73609:intron 30.0%
CCAACAATGAAATATACTTG+AGG + chr7.1:70464402-70464421 MS.gene73609:intron 30.0%
CCTCAAGTATATTTCATTGT+TGG - chr7.1:70464405-70464424 None:intergenic 30.0%
CTGAAGACTTCAAAGATATT+GGG + chr7.1:70463983-70464002 MS.gene73609:CDS 30.0%
TACTTCTTCCAACCATTAAT+TGG + chr7.1:70464314-70464333 MS.gene73609:intron 30.0%
TCTATATGATGAAAAGCTAG+TGG - chr7.1:70465582-70465601 None:intergenic 30.0%
TTATTCAGCTGAATTCCAAA+AGG - chr7.1:70465752-70465771 None:intergenic 30.0%
TTTCATTGTTGGATTGATAG+TGG - chr7.1:70464394-70464413 None:intergenic 30.0%
! AGAAACATTTTGTGGAGATA+AGG - chr7.1:70464189-70464208 None:intergenic 30.0%
! AGAGCCAACAACTTAATTTT+AGG - chr7.1:70464833-70464852 None:intergenic 30.0%
! AGCCAACAACTTAATTTTAG+GGG - chr7.1:70464831-70464850 None:intergenic 30.0%
! AGTTTAACTTTGTAACCTCA+AGG - chr7.1:70464534-70464553 None:intergenic 30.0%
! ATGATCTCCAGAATTTTCTT+TGG - chr7.1:70464925-70464944 None:intergenic 30.0%
! CTTCTTCAAGTTTCTTAACA+AGG + chr7.1:70465630-70465649 MS.gene73609:CDS 30.0%
! GAGCCAACAACTTAATTTTA+GGG - chr7.1:70464832-70464851 None:intergenic 30.0%
! GAGTTTTTCGCTTGAAAAAT+TGG - chr7.1:70465542-70465561 None:intergenic 30.0%
! GTTTAACTTTGTAACCTCAA+GGG - chr7.1:70464533-70464552 None:intergenic 30.0%
! TACCCCTAAAATTAAGTTGT+TGG + chr7.1:70464826-70464845 MS.gene73609:intron 30.0%
! TTCAAGATTTGGAACAAGTT+AGG + chr7.1:70465429-70465448 MS.gene73609:CDS 30.0%
! TTTGGAATTCAGCTGAATAA+TGG + chr7.1:70465752-70465771 MS.gene73609:CDS 30.0%
! TTTTCGCTTGAAAAATTGGA+AGG - chr7.1:70465538-70465557 None:intergenic 30.0%
!! GAACTATGAACAATGGATTA+AGG + chr7.1:70465795-70465814 MS.gene73609:CDS 30.0%
AAATAACAATGAAACGGGGA+GGG + chr7.1:70465829-70465848 MS.gene73609:CDS 35.0%
AAATGTAGCAAGTCACTTAC+AGG + chr7.1:70464969-70464988 MS.gene73609:CDS 35.0%
AATTGGTCAACATGATGTGT+TGG - chr7.1:70465383-70465402 None:intergenic 35.0%
ACTTCCATATTTGCAAACAC+TGG + chr7.1:70465307-70465326 MS.gene73609:CDS 35.0%
AGAAAGAGTAAAGAATGCCA+AGG + chr7.1:70464117-70464136 MS.gene73609:CDS 35.0%
AGATGTTGAAGAGAAAGGAA+TGG + chr7.1:70465175-70465194 MS.gene73609:CDS 35.0%
AGCTATGATCAAAACAGGTT+TGG + chr7.1:70465497-70465516 MS.gene73609:CDS 35.0%
AGGCCTATAAACAATGATAG+TGG - chr7.1:70464590-70464609 None:intergenic 35.0%
ATCTCAAAGACGCTAGAAAA+TGG + chr7.1:70463928-70463947 MS.gene73609:CDS 35.0%
CAACATGATGTGTTGGAAAT+TGG - chr7.1:70465376-70465395 None:intergenic 35.0%
CAGACAATACCTCAGAAAAA+TGG - chr7.1:70464345-70464364 None:intergenic 35.0%
GCGAAAAACTCATTCAATGA+TGG + chr7.1:70465551-70465570 MS.gene73609:CDS 35.0%
GCTGAAGACTTCAAAGATAT+TGG + chr7.1:70463982-70464001 MS.gene73609:CDS 35.0%
GGAATTGGAACTATGAACAA+TGG + chr7.1:70465788-70465807 MS.gene73609:CDS 35.0%
GTGCAAATAACAATGAAACG+GGG + chr7.1:70465825-70465844 MS.gene73609:CDS 35.0%
GTGTTGGAAATTGGTTGAAA+TGG - chr7.1:70465367-70465386 None:intergenic 35.0%
GTTATTCTCTGCAACAACAT+CGG - chr7.1:70465477-70465496 None:intergenic 35.0%
TAGGCTTGGAAAATCAAAGT+TGG + chr7.1:70465448-70465467 MS.gene73609:CDS 35.0%
TATGCCAGTGTTTGCAAATA+TGG - chr7.1:70465314-70465333 None:intergenic 35.0%
TCATCATATAGAGCTGAACA+AGG + chr7.1:70465590-70465609 MS.gene73609:CDS 35.0%
TGCTATTGACCAAATTGGAT+TGG + chr7.1:70464212-70464231 MS.gene73609:CDS 35.0%
TTAAACTCTTACCACTAAGC+TGG + chr7.1:70464547-70464566 MS.gene73609:intron 35.0%
TTGAAGTCTTCAGCACAAAA+AGG - chr7.1:70463976-70463995 None:intergenic 35.0%
! ACATTTTCTCTGTTCACGTT+AGG - chr7.1:70464955-70464974 None:intergenic 35.0%
! CAATGCTTCTTTTCGTTCTT+AGG - chr7.1:70464093-70464112 None:intergenic 35.0%
! GTTTGCAAATATGGAAGTGT+TGG - chr7.1:70465305-70465324 None:intergenic 35.0%
! TAGCAAGCAGAAACATTTTG+TGG - chr7.1:70464197-70464216 None:intergenic 35.0%
!! AGCGTCTTTGAGATTAAACT+TGG - chr7.1:70463922-70463941 None:intergenic 35.0%
ACACTGGCATATCAAACAAG+AGG + chr7.1:70465323-70465342 MS.gene73609:CDS 40.0%
CAAATAACAATGAAACGGGG+AGG + chr7.1:70465828-70465847 MS.gene73609:CDS 40.0%
CTTGAATATCTCTCTCTCCT+TGG - chr7.1:70464137-70464156 None:intergenic 40.0%
GTTGAAGAGAAAGGAATGGT+TGG + chr7.1:70465179-70465198 MS.gene73609:CDS 40.0%
TAACTTTGTAACCTCAAGGG+AGG - chr7.1:70464530-70464549 None:intergenic 40.0%
TAGAGCTGAACAAGGATTGA+TGG + chr7.1:70465598-70465617 MS.gene73609:CDS 40.0%
TCCTTATATACCAAAAGGGC+TGG + chr7.1:70465403-70465422 MS.gene73609:CDS 40.0%
TGGCTCAACCAATTAATGGT+TGG - chr7.1:70464325-70464344 None:intergenic 40.0%
TTGGCACAGCCTCTAAATTA+GGG - chr7.1:70464906-70464925 None:intergenic 40.0%
TTTGGCACAGCCTCTAAATT+AGG - chr7.1:70464907-70464926 None:intergenic 40.0%
! AATAATGGAGCAGGAATGGT+TGG + chr7.1:70465767-70465786 MS.gene73609:CDS 40.0%
! ATTCAGCTGAATAATGGAGC+AGG + chr7.1:70465758-70465777 MS.gene73609:CDS 40.0%
! GATTTGGAACAAGTTAGGCT+TGG + chr7.1:70465434-70465453 MS.gene73609:CDS 40.0%
!! CTGCTTGCTATTGACCAAAT+TGG + chr7.1:70464207-70464226 MS.gene73609:CDS 40.0%
!! TTCTGAGGTATTGTCTGCTT+TGG + chr7.1:70464348-70464367 MS.gene73609:intron 40.0%
!!! GATTTTAACTTCCTCCCTTG+AGG + chr7.1:70464516-70464535 MS.gene73609:intron 40.0%
!!! TTGGTTGAGCCATTTTTCTG+AGG + chr7.1:70464333-70464352 MS.gene73609:intron 40.0%
CTGCGAGATGTTGAAGAGAA+AGG + chr7.1:70465170-70465189 MS.gene73609:CDS 45.0%
GAAGAGAAAGGAATGGTTGG+AGG + chr7.1:70465182-70465201 MS.gene73609:CDS 45.0%
GGCTGTGCCAAAGAAAATTC+TGG + chr7.1:70464915-70464934 MS.gene73609:CDS 45.0%
! GCCAGCCCTTTTGGTATATA+AGG - chr7.1:70465407-70465426 None:intergenic 45.0%
! GCTGAATAATGGAGCAGGAA+TGG + chr7.1:70465763-70465782 MS.gene73609:CDS 45.0%
!! CTCACAGAGCTCTAAGATCA+AGG + chr7.1:70465210-70465229 MS.gene73609:CDS 45.0%
GGAGCAGGAATGGTTGGAAT+TGG + chr7.1:70465773-70465792 MS.gene73609:CDS 50.0%
! TCTTGAAGAGCCAGCCCTTT+TGG - chr7.1:70465416-70465435 None:intergenic 50.0%
!! AGGGCTGGCTCTTCAAGATT+TGG + chr7.1:70465418-70465437 MS.gene73609:CDS 50.0%
ACAATGAAACGGGGAGGGAG+TGG + chr7.1:70465834-70465853 MS.gene73609:CDS 55.0%
TGCACTAGCTGCCAGCTTAG+TGG - chr7.1:70464561-70464580 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 70463901 70465868 70463901 ID=MS.gene73609
chr7.1 mRNA 70463901 70465868 70463901 ID=MS.gene73609.t1;Parent=MS.gene73609
chr7.1 exon 70463901 70464237 70463901 ID=MS.gene73609.t1.exon1;Parent=MS.gene73609.t1
chr7.1 CDS 70463901 70464237 70463901 ID=cds.MS.gene73609.t1;Parent=MS.gene73609.t1
chr7.1 exon 70464914 70464990 70464914 ID=MS.gene73609.t1.exon2;Parent=MS.gene73609.t1
chr7.1 CDS 70464914 70464990 70464914 ID=cds.MS.gene73609.t1;Parent=MS.gene73609.t1
chr7.1 exon 70465155 70465868 70465155 ID=MS.gene73609.t1.exon3;Parent=MS.gene73609.t1
chr7.1 CDS 70465155 70465868 70465155 ID=cds.MS.gene73609.t1;Parent=MS.gene73609.t1
Gene Sequence

>MS.gene73609

ATGTCTGAAGACAATAGGCCAAGTTTAATCTCAAAGACGCTAGAAAATGGAGCTGCACAGTACATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTGGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAGTTTATTTGTGAGAAGCGAAGAAGAAGAGATATCAAGTGAACCTAAGAACGAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAATGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTCCACAAAATGTTTCTGCTTGCTATTGACCAAATTGGATTGGAAAGTAAGTCATCTTTTAAAAATATTTGAAAGGCTTTTTAAATCTAAATAGTTTTAAATATACTTTTTAGTTTTATGTGTACTTCTTCCAACCATTAATTGGTTGAGCCATTTTTCTGAGGTATTGTCTGCTTTGGATCTTATATAAATGTATATGCCACTATCAATCCAACAATGAAATATACTTGAGGTCAAAAGAAATATAATAAACTATTGTAATGTACACACCGCTATTATTTTACAGTGATATTATAATGGTCATTTGACAACCATATCATATGGGATTTTAACTTCCTCCCTTGAGGTTACAAAGTTAAACTCTTACCACTAAGCTGGCAGCTAGTGCACAAACACCACTATCATTGTTTATAGGCCTAAGTAAATATACTAATAACAATTTAGTAATTTACATAGGACACACTTAATTTTGCAAATGTTTTCACATCAGACATATGTTTTATATTTTACACGATGAACATAAATACAATTAATATCAAATTACATGCATTAATAATAATTTACATATATTGTCCAAAAACAAACTACCTATTATCCAAATTTTAATATTAATACACACTTTGCATTTGTTTCATACCCCTAAAATTAAGTTGTTGGCTCTTTCATTATATATATAGCTAACTACAATGAGTTTTCTTGTGTTTATCTTTTCCCTAATTTAGAGGCTGTGCCAAAGAAAATTCTGGAGATCATGAATATACCTAACGTGAACAGAGAAAATGTAGCAAGTCACTTACAGGTTTTTCTTCTCAATTTACTTCATATATTTCCATAATATTATAATATCATCATTAGAAGACTGAATGATAATGTTGATAATTTTTCTGTCTCTAATTTTTGTTAACTTTTTCTAGTATATCTTACAAACTATAATGCTTTAGTATATGATCACAATACTTGCAGAAGTATCGCATATTTCTGCGAGATGTTGAAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTCTAAGATCAAGGTTTGCATCAAGTCTTCCGATGTCTATGATAAGAGAAATCGAAGAAAAAAGAACAAACAAACTTCATGCGCCAACACTTCCATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACACATCATGTTGACCAATTTCCTTATATACCAAAAGGGCTGGCTCTTCAAGATTTGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCCGATGTTGTTGCAGAGAATAACAGCTATGATCAAAACAGGTTTGGAATAAGCTCTTCAAGCCTTCCAATTTTTCAAGCGAAAAACTCATTCAATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGCTGAACAAGGATTGATGGTTTCTTCTTCTTCTTCAAGTTTCTTAACAAGGGATTTTAAATTTGGTGATATTAGAAACCAAAATTATGGTGTTAAAAGCACTAATGTCATGCCTCATAAATTTACTTCTGATGTAAGAAATAACAATCCTTTTGGAATTCAGCTGAATAATGGAGCAGGAATGGTTGGAATTGGAACTATGAACAATGGATTAAGGGCTTCTAGTGCAAATAACAATGAAACGGGGAGGGAGTGGAAGAGTTTCTAG
Protein sequence

>MS.gene73609.t1

MSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIGKYVMEAKKEKLFIESLFVRSEEEEISSEPKNEKKHCKRKSKECQGERDIQVVKKQKLVWTPYLHKMFLLAIDQIGLEKAVPKKILEIMNIPNVNRENVASHLQKYRIFLRDVEEKGMVGGISHRALRSRFASSLPMSMIREIEEKRTNKLHAPTLPYLQTLAYQTRGANNVFNHFNQFPTHHVDQFPYIPKGLALQDLEQVRLGKSKLEADVVAENNSYDQNRFGISSSSLPIFQAKNSFNDGASTSFSSYRAEQGLMVSSSSSSFLTRDFKFGDIRNQNYGVKSTNVMPHKFTSDVRNNNPFGIQLNNGAGMVGIGTMNNGLRASSANNNETGREWKSF