AlfalfaGEDB | MS.gene73647

M. sativa cultivar XinJiangDaYe / MS.gene73647

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73647.t1	KEH29775.1	92.5	963	70	1	1	963	1	961	0.00E+00	1532.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73647.t1	P43298	41.9	962	499	13	14	963	29	942	2.0e-167	591.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73647.t1	A0A072UV78	92.5	963	70	1	1	963	1	961	0.0e+00	1532.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73647.t1	MTR_4g051605	93.977	963	56	1	1	963	1	961	0.0	1682
MS.gene73647.t1	MTR_2g087230	70.752	971	241	9	1	963	18	953	0.0	1253
MS.gene73647.t1	MTR_7g106210	61.273	958	331	10	9	963	22	942	0.0	1124
MS.gene73647.t1	MTR_5g077430	45.436	975	466	19	4	963	22	945	0.0	753
MS.gene73647.t1	MTR_1g033000	41.667	984	489	19	1	963	14	933	0.0	706
MS.gene73647.t1	MTR_8g106100	41.942	937	456	16	13	934	31	894	0.0	689
MS.gene73647.t1	MTR_3g084510	63.307	387	138	2	581	963	547	933	1.12e-164	506
MS.gene73647.t1	MTR_1g033010	54.524	420	174	3	553	963	517	928	2.88e-146	458
MS.gene73647.t1	MTR_1g033010	36.650	412	242	9	30	433	44	444	2.11e-62	229
MS.gene73647.t1	MTR_1g033040	51.178	467	204	8	510	963	481	936	3.73e-146	458

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73647.t1	AT2G01820	45.599	943	440	16	42	963	53	943	0.0	771
MS.gene73647.t1	AT1G66150	43.852	976	462	21	13	963	28	942	0.0	725
MS.gene73647.t1	AT3G23750	62.467	381	137	2	588	963	549	928	6.15e-159	491
MS.gene73647.t1	AT3G23750	42.487	386	213	7	45	426	53	433	2.05e-82	286
MS.gene73647.t1	AT1G24650	59.730	370	138	3	596	963	526	886	7.70e-141	443
MS.gene73647.t1	AT1G24650	38.443	424	240	12	8	421	19	431	1.26e-76	270
MS.gene73647.t1	AT1G55610	29.852	881	512	26	65	896	314	1137	5.32e-81	286
MS.gene73647.t1	AT1G55610	25.285	439	245	14	46	419	144	564	2.12e-15	81.6
MS.gene73647.t1	AT1G55610	29.852	881	512	26	65	896	314	1137	5.32e-81	286
MS.gene73647.t1	AT1G55610	25.285	439	245	14	46	419	144	564	2.12e-15	81.6

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Find 213 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTAGCAATCGTGGC+TGG	0.524413	4.1:-46704623	MS.gene73647:CDS
AAAACCATTCGGCTAAGTAA+CGG	0.575310	4.1:+46702931	None:intergenic
AAAACCGTTACTTAGCCGAA+TGG	0.599728	4.1:-46702935	MS.gene73647:CDS
AAAATGTACCTGCATATTCA+GGG	0.529943	4.1:+46703775	None:intergenic
AAAATTTGGAAGGAAGCAGA+AGG	0.575924	4.1:-46702651	MS.gene73647:CDS
AAACCGTTCCAAATCCACCA+CGG	0.758520	4.1:+46704273	None:intergenic
AAAGTGGATGTGTTCAGCTA+TGG	0.605585	4.1:-46703017	MS.gene73647:CDS
AAATGTACCTGCATATTCAG+GGG	0.669714	4.1:+46703776	None:intergenic
AAATTTGGAAGGAAGCAGAA+GGG	0.616193	4.1:-46702650	MS.gene73647:CDS
AACACATAATTCCATGAAGG+TGG	0.615726	4.1:+46706021	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGTACCTGCATATTC+AGG	+	chr4.1:46704924-46704943	None:intergenic	30.0%
AAAATGTACCTGCATATTCA+GGG	+	chr4.1:46704923-46704942	None:intergenic	30.0%
AACCATTAGTAGCATTCAAA+GGG	+	chr4.1:46702955-46702974	None:intergenic	30.0%
AGGTTTGATTCCAAATTCAT+TGG	-	chr4.1:46703336-46703355	MS.gene73647:intron	30.0%
ATCGGACAAAGAAAAACTTA+TGG	-	chr4.1:46705797-46705816	MS.gene73647:CDS	30.0%
ATTCTATTGAAGGAAATGAG+AGG	-	chr4.1:46704592-46704611	MS.gene73647:CDS	30.0%
CTGTTTCATGATCATAGAAA+AGG	+	chr4.1:46704970-46704989	None:intergenic	30.0%
GCAAATGTTGAAAATTTGGA+AGG	-	chr4.1:46706034-46706053	MS.gene73647:CDS	30.0%
GGATTTGAGTGATAACAATT+TGG	-	chr4.1:46703771-46703790	MS.gene73647:intron	30.0%
TAATCGAATTCTTCATCAAC+TGG	+	chr4.1:46705981-46706000	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	46702551	46706166	46702551	ID=MS.gene73647
chr4.1	mRNA	46702551	46706166	46702551	ID=MS.gene73647.t1;Parent=MS.gene73647
chr4.1	exon	46703784	46706166	46703784	ID=MS.gene73647.t1.exon1;Parent=MS.gene73647.t1
chr4.1	CDS	46703784	46706166	46703784	ID=cds.MS.gene73647.t1;Parent=MS.gene73647.t1
chr4.1	exon	46702551	46703059	46702551	ID=MS.gene73647.t1.exon2;Parent=MS.gene73647.t1
chr4.1	CDS	46702551	46703059	46702551	ID=cds.MS.gene73647.t1;Parent=MS.gene73647.t1

Gene Sequence

>MS.gene73647

ATGATTTCAATGTCTTTTGGTGAAACCAACCCAAATGATCTCAAAATTCTGAATGATTTCAAAAAAGGGTTGAAGAATTCAGAGCTTCTGAAATGGCCTGAAAATGGTAATGATCCATGTGGTCCACCTTCATGGAATTATGTGTTCTGTTCTAAAGGTAGAGTTACTCAAATTCAAGCAAAAAATCTTGGTCTTAAAGGTTCATTGCCTTCAAATTTTAATCAGCTTTCTGAGCTTCAGAATTTAGGTCTTCAAAGAAATAATCTTAGTGGAATTTTGCCAAGTTTTAGTGGATTATCCAATTTGCAATATGCTTTTTTGGATTACAATGAATTTGATGCAATCCCTGTTGATTTCTTCAATGGACTTGATAATATTCAGGTTTTGTCTTTGGAAGAAAACCCTTTGAATGCTACTAATGGTTGGTCATTTCCATTGGACTTGAAAAATTCAGCTCAATTAACAAATCTTTCTTTGGTGAATTGTAATTTGGTTGGTCCATTACCTGATTTTCTAGGCACATTGTCTTCTTTGACAAATTTGAGGCTTTCAGGTAACAGACTTTCGGGTGAAATTCCGGTTAGTTTCGGTCAATCTTCGATTCAGGTTCTGTGGTTGAATGATCAACAAGGTGCTGGAATGACAGGTTCTATTGATGTTATTGCTTCAATGACATATTTGAGACAGGTTTGGTTACATGGAAACAAGTTCACCGGAACGATTCCGTTGAATATTGGAAATTTGACTGCACTGCAAGAGCTTAACCTCAATGGTAATCAACTTGTAGGTTTGATTCCAAATTCATTGGCAAATATGGATCTGAAGTTACTTGTGTTAAATAATAATATGTTTGTTGGTCCAATACCAAAGTTTAAGGCTGCAAAAGTATCTTATGATTCTAATTCCTTTTGTCAAACTAAACCTGGTCTTGATTGTGCTTCTAATGTTAATGTTCTGTTGGATTTTCTTCGTAATCTGAATTATCCATCATTTCTTATTACTCAATGGGTTGGTAACGATCCTTGTGGAGAACCGTGGTTTGGGTTGAGCTGCAGTAACTCGAAGGTGTCTAGAATCAATTTTCCTCGACGAAAGCTTAATGGTACATTGAGTCCTTCACTTGCTATGTTAGATTCATTACTTGAAATTAGGCTTGGAGGAAACGATATAAGTGGTAAAGTTCCTAGTAATTTTACTGAATTGAAATCATTGAGTTTGTTGGATTTGAGTGATAACAATTTGGAACCTCCATTGCCGAATTTTCGTGATGGTGTGAAGGTTATCGTTGATGGTAACCCTCTTTTCGATAACCAAACTCGAATAAGTCCGGTTCCTGTTAAAAGTCCGTCACCTGTAAGTGAACCGCCTTCACCACACAACGTGCCGCCATATCTTACGCCACCGCCATCGCCATCGCCATCGCCATCTGTCGTTATTCCACCTACCCCTAGGCAAAGTTCAAGCTCCAATCAGTCTAGGAATGTCGAATCAAATCCTCAACGGAATAACTCGAATAAATTCAAAACAGTAGCAATCGTGGCTGGAGTTGCAGTTTTTGCATTTGTAGCTGCATTGGTTATTTATCTCTTTATATGCTGTTGTGCGAAGAAGAAGAATAAGAAATACTCATTGGATGGTTCTAGCTCTATCATGGCTCAAAGTCAAGATGGATCCGATCCAAAAGTGATGGTTAAATTGGCAGCGTCGGATAGCACCAAAGGGAGCTTATCGACAAAGACAGGAATAAGCTCTCTGATTAACAATAGTGGCGAAACCGAAAGCTATCATGTATTTGAAGCCGGTAACCTAGTTATCTCAGTTCAAGTTCTGCGCAGGGTCACCAACAATTTTGCTTCGGAAAATGAGTTGGGCCGTGGTGGATTTGGAACGGTTTACAAAGGTGAACTTGAAGATGGAACAAAAATAGCAGTGAAAAGAATGGAATGTGGAGCTATTGGAACCAAAGGAATCGACGAGTTTCAAGCGGAAATAGCCGTTCTTTCGAAGGTTCGGCACCGACATTTGGTATCCTTGTTAGGCTATTCTATTGAAGGAAATGAGAGGCTTTTGGTTTATGAATACATGCCTCTTGGTGCTCTAAGTAGACATCTTTTCCATTGGAAAAGCTTGAATTTGGACCCTTTGTCTTGGTCACAGAGGCTTGCAATAGCACTTGATGTTGCTAGAGGAATAGAATACCTTCACACTCTTGCACGACAGACGTTCATCCACCGAGACCTCAAGTCTTCAAATATTTTACTTGGAGATGATACTCGAGCTAAAGTTTCTGATTTTGGTTTGGTGAAACTTGCACCGGATGGTGAAAAGTCTATGGCAACAAGACTTGCTGGAACATTTGGATACCTTGCCCCTGAATATGCAGGTACATTTTTGCTTTAAATCACATCTGGAAATTCCTTTTCTATGATCATGAAACAGTTTTCCAAATTGAGAATAAAAGCATAGTTTATGTTAATATCTGCATATTACCACATTATTTATCCCTAGTTATTAATTTATTTCAGTTAGTATGTTCTTAAAATAAAGACATCTGAGAAGGAAAAAAAATTAGGTAACAAAAGGTTGTGTTTGTTTTTTGCAAAAGCAAACGCAAATCCAATAAGTTATATTGTATGTAACATGTTGTTTGGCCTTATCTGCAATTTGAGAATATACTTTTACATTATTTTATTCTGCCGTGGATTAGTGTTTGGTCACAGTATACAAACACAACTTTATTTAAGGTTAATAAGAAAATGGTATATTTGTTTTTAGTGAGCTCAACATTGTTATAAATTGTGGTCTTCAACCGCAATTGTGACCACAATATAACAGTGTTAGAGGTTTCCGCAACATTATTGCAACTGTAACTGCGGCCGCATTGGTCAGTATTTTACCACAATATAAAGGTTTGCAACGTAAGCGTAACTGCAATTTAAAACCACGAGTTCAGTGTTAAAGAATATAGGAGCTATATGATCCCTGTATCTCGTAGATTTGCATTATATTGATGTAAGATATAGATGTGATTATATCTCTACACTTCTTGAACATTTGTGTAATGCATCTAGCCTCCCACACACTAACTAAAATTTTCTGAGTTTCAGTGATGGGGAAAATCACGACTAAAGTGGATGTGTTCAGCTATGGTGTCGTATTGATGGAACTGCTGACCGGATTAATGGCTCTTGACGAAAGCCGACCAGAGGAAAACCGTTACTTAGCCGAATGGTTTTGGCAAATCAAATCGGACAAAGAAAAACTTATGGCTGCAATCGATCAAACACTTGAAGTAAACGAAGAGACTTTTGAGAGTATTTCAATTGTAGCTGAACTTGCGGGACATTGCACTGCTAGGGAGGCAAACCATAGGCCAGATATGGGACATGCAGTCAAAGTGCTGTCAGAGTTAGTCGAGAAATGGCGACCAGTTGATGAAGAATTCGATTATGCCGGTGGCATTGACTTCGGCCAACCACTTCCGCAAATGTTGAAAATTTGGAAGGAAGCAGAAGGGAAAGATACAAGCTATACAAGTCTTGAAAATAGTAAAGGAAGTATACCAGCTAAACCACCTGGTTTTGCAGATTCATTTACTTCTGCTGATGCTAGATGA

Protein sequence

>MS.gene73647.t1

MISMSFGETNPNDLKILNDFKKGLKNSELLKWPENGNDPCGPPSWNYVFCSKGRVTQIQAKNLGLKGSLPSNFNQLSELQNLGLQRNNLSGILPSFSGLSNLQYAFLDYNEFDAIPVDFFNGLDNIQVLSLEENPLNATNGWSFPLDLKNSAQLTNLSLVNCNLVGPLPDFLGTLSSLTNLRLSGNRLSGEIPVSFGQSSIQVLWLNDQQGAGMTGSIDVIASMTYLRQVWLHGNKFTGTIPLNIGNLTALQELNLNGNQLVGLIPNSLANMDLKLLVLNNNMFVGPIPKFKAAKVSYDSNSFCQTKPGLDCASNVNVLLDFLRNLNYPSFLITQWVGNDPCGEPWFGLSCSNSKVSRINFPRRKLNGTLSPSLAMLDSLLEIRLGGNDISGKVPSNFTELKSLSLLDLSDNNLEPPLPNFRDGVKVIVDGNPLFDNQTRISPVPVKSPSPVSEPPSPHNVPPYLTPPPSPSPSPSVVIPPTPRQSSSSNQSRNVESNPQRNNSNKFKTVAIVAGVAVFAFVAALVIYLFICCCAKKKNKKYSLDGSSSIMAQSQDGSDPKVMVKLAASDSTKGSLSTKTGISSLINNSGETESYHVFEAGNLVISVQVLRRVTNNFASENELGRGGFGTVYKGELEDGTKIAVKRMECGAIGTKGIDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLNLDPLSWSQRLAIALDVARGIEYLHTLARQTFIHRDLKSSNILLGDDTRAKVSDFGLVKLAPDGEKSMATRLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEENRYLAEWFWQIKSDKEKLMAAIDQTLEVNEETFESISIVAELAGHCTAREANHRPDMGHAVKVLSELVEKWRPVDEEFDYAGGIDFGQPLPQMLKIWKEAEGKDTSYTSLENSKGSIPAKPPGFADSFTSADAR