AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73739

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73739.t1 MTR_2g093960 35.632 174 96 5 104 268 37 203 4.02e-27 110
MS.gene73739.t1 MTR_8g017210 35.897 156 92 3 104 259 67 214 9.54e-27 110
MS.gene73739.t1 MTR_4g059870 35.897 156 93 4 104 259 43 191 3.83e-26 108
MS.gene73739.t1 MTR_2g099990 35.256 156 93 3 104 259 51 198 4.73e-25 105
MS.gene73739.t1 MTR_1g112270 34.228 149 90 3 111 259 56 196 1.20e-24 104
MS.gene73739.t1 MTR_1g112270 34.228 149 90 3 111 259 67 207 1.37e-24 104
MS.gene73739.t1 MTR_1g094115 34.899 149 89 3 111 259 59 199 2.92e-24 103
MS.gene73739.t1 MTR_1g016010 35.099 151 91 3 109 259 51 194 3.04e-23 99.8
MS.gene73739.t1 MTR_2g090745 35.570 149 88 4 111 259 19 159 2.61e-22 97.1
MS.gene73739.t1 MTR_2g099990 36.496 137 79 3 123 259 1 129 2.77e-22 96.7
MS.gene73739.t1 MTR_1g094115 35.878 131 76 3 129 259 60 182 6.52e-21 93.6
MS.gene73739.t1 MTR_1g093095 35.220 159 86 6 130 278 117 268 3.01e-20 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73739.t1 AT1G34370 59.394 165 61 2 113 271 19 183 3.81e-70 220
MS.gene73739.t1 AT1G34370 39.432 317 121 8 26 271 77 393 2.37e-69 224
MS.gene73739.t1 AT1G34370 39.432 317 121 8 26 271 77 393 2.37e-69 224
MS.gene73739.t1 AT5G22890 58.125 160 61 1 113 266 202 361 2.84e-66 213
MS.gene73739.t1 AT5G66730 37.821 156 89 3 104 259 37 184 1.47e-27 112
MS.gene73739.t1 AT5G44160 35.897 156 92 4 104 259 42 189 4.41e-27 110
MS.gene73739.t1 AT5G44160 36.424 151 88 4 109 259 8 150 7.45e-27 109
MS.gene73739.t1 AT1G03840 37.086 151 87 4 109 259 51 193 1.29e-26 110
MS.gene73739.t1 AT3G45260 35.762 151 90 3 109 259 49 192 4.39e-26 107
MS.gene73739.t1 AT3G45260 35.762 151 90 3 109 259 49 192 4.39e-26 107
MS.gene73739.t1 AT1G03840 36.913 149 86 4 111 259 51 191 4.41e-26 108
MS.gene73739.t1 AT5G03150 35.065 154 93 4 106 259 60 206 5.53e-26 108
MS.gene73739.t1 AT5G60470 35.811 148 88 3 109 256 50 190 5.60e-26 107
MS.gene73739.t1 AT5G60470 35.811 148 88 3 109 256 54 194 5.96e-26 107
MS.gene73739.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene73739.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene73739.t1 AT1G55110 37.086 151 88 4 109 259 73 216 1.35e-25 106
MS.gene73739.t1 AT5G60470 35.616 146 87 3 111 256 47 185 3.49e-25 105
MS.gene73739.t1 AT3G50700 35.897 156 92 3 104 259 39 186 1.28e-24 103
MS.gene73739.t1 AT3G13810 34.503 171 98 4 109 279 80 236 1.66e-24 103
MS.gene73739.t1 AT3G13810 34.503 171 98 4 109 279 80 236 1.66e-24 103
MS.gene73739.t1 AT3G13810 34.503 171 98 4 109 279 75 231 1.78e-24 103
MS.gene73739.t1 AT3G13810 34.503 171 98 4 109 279 61 217 1.84e-24 103
MS.gene73739.t1 AT2G02070 33.962 159 95 4 101 259 56 204 2.37e-24 103
MS.gene73739.t1 AT2G02070 33.962 159 95 4 101 259 56 204 2.37e-24 103
MS.gene73739.t1 AT1G14580 29.949 197 115 6 78 259 17 205 3.97e-24 102
MS.gene73739.t1 AT1G14580 29.949 197 115 6 78 259 17 205 3.97e-24 102
MS.gene73739.t1 AT1G14580 29.949 197 115 6 78 259 31 219 5.30e-24 102
MS.gene73739.t1 AT4G02670 36.424 151 89 3 109 259 65 208 5.91e-24 101
MS.gene73739.t1 AT4G02670 36.424 151 89 3 109 259 63 206 6.02e-24 101
MS.gene73739.t1 AT3G13810 34.320 169 97 4 111 279 83 237 1.05e-23 101
MS.gene73739.t1 AT3G13810 34.320 169 97 4 111 279 69 223 1.18e-23 101
MS.gene73739.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene73739.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene73739.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene73739.t1 AT2G02080 34.228 149 90 4 111 259 66 206 1.49e-23 101
MS.gene73739.t1 AT1G51220 36.747 166 89 8 130 291 180 333 1.60e-22 96.7
MS.gene73739.t1 AT3G20880 35.220 159 95 6 130 284 258 412 2.42e-22 97.1
MS.gene73739.t1 AT1G25250 36.913 149 87 4 109 256 43 185 1.13e-21 94.7
MS.gene73739.t1 AT1G25250 36.913 149 87 4 109 256 20 162 1.28e-21 94.4
MS.gene73739.t1 AT1G34790 37.725 167 94 8 121 281 137 299 1.57e-21 93.2
MS.gene73739.t1 AT2G01940 36.842 152 82 6 109 256 54 195 5.46e-21 93.6
MS.gene73739.t1 AT1G08290 34.375 160 94 6 130 282 182 337 1.28e-20 91.3
MS.gene73739.t1 AT1G68130 37.500 152 81 6 109 256 51 192 1.54e-20 92.0
MS.gene73739.t1 AT2G02080 32.847 137 84 3 123 259 1 129 3.50e-20 90.9
MS.gene73739.t1 AT2G02080 32.847 137 84 3 123 259 1 129 3.50e-20 90.9
MS.gene73739.t1 AT3G57670 31.658 199 118 7 109 293 189 383 2.11e-19 88.2
MS.gene73739.t1 AT1G13290 33.333 174 107 6 95 263 69 238 7.56e-19 85.9
MS.gene73739.t1 AT2G01940 37.143 140 74 6 109 244 54 183 2.44e-18 85.9

Find 97 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGCTTTGATGAAATTT+TGG 0.092891 3.1:-70109363 MS.gene73739:CDS
GAAGAGTTCTTTCATGATTT+TGG 0.097161 3.1:-70109398 MS.gene73739:CDS
TGGGTAGTGTGATGGGAATC+TGG 0.233101 3.1:+70110283 None:intergenic
GGACGACGACGCACGGTTAA+AGG 0.268870 3.1:+70109812 None:intergenic
TTTGCAGTGGATGAAGTATC+TGG 0.279945 3.1:+70110263 None:intergenic
GAAGAATTATTCGATGCTTT+CGG 0.349953 3.1:-70109645 MS.gene73739:CDS
TCGAGTAAAGATGATGAAAT+TGG 0.358576 3.1:-70109428 MS.gene73739:CDS
AACGCCGCCGCCCTCGTTCC+CGG 0.371943 3.1:-70110061 MS.gene73739:CDS
TCTAGGAAGGATAAGTTGTT+TGG 0.372634 3.1:-70109557 MS.gene73739:CDS
GAGGGCGGCGGCGTTGACTA+TGG 0.385405 3.1:+70110069 None:intergenic
GGTGGAGGACGGCAAAGATT+TGG 0.403975 3.1:+70110095 None:intergenic
TGTTGGAAGATGAGGAGAAA+GGG 0.407870 3.1:-70109496 MS.gene73739:CDS
GGACATGTTGCTTTGTTTGA+GGG 0.416752 3.1:-70109536 MS.gene73739:CDS
CGAAGCGGAACTTGAGGGTC+GGG 0.417024 3.1:+70110226 None:intergenic
AAAGGCTTCGCTAAAGCTTC+CGG 0.425013 3.1:+70109830 None:intergenic
CGGTTCTCGTGTCCGTTTGA+AGG 0.428660 3.1:-70109785 MS.gene73739:CDS
GGAATCTTCCACGGCGGTGA+GGG 0.432442 3.1:+70109991 None:intergenic
GAGCGTTGGTGGTGATGGAT+TGG 0.440346 3.1:+70110152 None:intergenic
TGCCGCATATCTCGCAGAAA+TGG 0.442862 3.1:+70109918 None:intergenic
GAATGAAGATCCTATGGAAA+TGG 0.446675 3.1:-70109453 MS.gene73739:CDS
TGGACATGTTGCTTTGTTTG+AGG 0.450086 3.1:-70109537 MS.gene73739:CDS
GAAATTCAAAGCATTGAAAT+CGG 0.454219 3.1:-70109738 MS.gene73739:CDS
TCCGCTTCGGAATCTATCCT+TGG 0.455820 3.1:-70110212 MS.gene73739:CDS
TCAAGCGCGACGCGAATCTC+CGG 0.460817 3.1:-70109889 MS.gene73739:CDS
CGGATTTGAAGAGTCATATG+AGG 0.460927 3.1:-70109625 MS.gene73739:CDS
GGCACCGGGAACGAGGGCGG+CGG 0.463287 3.1:+70110057 None:intergenic
GATTCCGAAGCGGAACTTGA+GGG 0.464978 3.1:+70110221 None:intergenic
GGAGGAGAAGACGGAGGCAC+CGG 0.465619 3.1:+70110042 None:intergenic
AGCGTTGGTGGTGATGGATT+GGG 0.484580 3.1:+70110153 None:intergenic
GAATCTTCCACGGCGGTGAG+GGG 0.490348 3.1:+70109992 None:intergenic
GGGTAGTGTGATGGGAATCT+GGG 0.490735 3.1:+70110284 None:intergenic
AAGTATCTGGGTAGTGTGAT+GGG 0.491876 3.1:+70110276 None:intergenic
GAGCTCCACAATTTCGCAAT+CGG 0.498272 3.1:+70109970 None:intergenic
GACGGAGGCACCGGGAACGA+GGG 0.499392 3.1:+70110051 None:intergenic
CTAAGTGGAAGTGTTCTTGT+GGG 0.500097 3.1:-70109589 MS.gene73739:CDS
GACAGGAGCGTTGGTGGTGA+TGG 0.501841 3.1:+70110147 None:intergenic
CGTGTGCTCTCATGTGCATC+CGG 0.503672 3.1:+70109870 None:intergenic
TTACTCGATGCCATTTCCAT+AGG 0.504832 3.1:+70109443 None:intergenic
GTGTGATGGGAATCTGGGTT+CGG 0.507152 3.1:+70110289 None:intergenic
TGGATTGGGACAGGAAGGTT+CGG 0.516488 3.1:+70110167 None:intergenic
TGGTGGTGATGGATTGGGAC+AGG 0.519067 3.1:+70110158 None:intergenic
AATCTTCCACGGCGGTGAGG+GGG 0.520341 3.1:+70109993 None:intergenic
TTTCTGTTACATCCTTCAAA+CGG 0.521111 3.1:+70109773 None:intergenic
AGATTCCGATTGCGAAATTG+TGG 0.528555 3.1:-70109975 MS.gene73739:CDS
TGAGGAGAATGAAGATCCTA+TGG 0.533388 3.1:-70109459 MS.gene73739:CDS
TAAAGATGATGAAATTGGTA+TGG 0.536892 3.1:-70109423 MS.gene73739:CDS
AGATTACACGAATACATCTT+CGG 0.537959 3.1:+70109677 None:intergenic
TTCTGCGAGATATGCGGCAA+AGG 0.541688 3.1:-70109914 MS.gene73739:CDS
GTTAATTGATCATTGCTGAC+AGG 0.542229 3.1:+70110130 None:intergenic
GGAGGCACCGGGAACGAGGG+CGG 0.542744 3.1:+70110054 None:intergenic
GAGGAGAAGACGGAGGCACC+GGG 0.543680 3.1:+70110043 None:intergenic
CCGACCCTCAAGTTCCGCTT+CGG 0.543888 3.1:-70110225 MS.gene73739:CDS
GAGGACGGCAAAGATTTGGT+TGG 0.549075 3.1:+70110099 None:intergenic
AGACGGAGGCACCGGGAACG+AGG 0.549677 3.1:+70110050 None:intergenic
GTGTGAAGACTCATTTCAAG+AGG 0.550074 3.1:-70109709 MS.gene73739:CDS
GAAGCGGAACTTGAGGGTCG+GGG 0.550186 3.1:+70110227 None:intergenic
ATTGCTGACAGGAGCGTTGG+TGG 0.551289 3.1:+70110141 None:intergenic
CGGAATCTTCCACGGCGGTG+AGG 0.555882 3.1:+70109990 None:intergenic
AGATTCCGAAGCGGAACTTG+AGG 0.557075 3.1:+70110220 None:intergenic
GGCAAAGATTTGGTTGGAGA+CGG 0.557743 3.1:+70110105 None:intergenic
TCATCTTCCAACATAACAGC+AGG 0.563199 3.1:+70109506 None:intergenic
AGGGAAGCAAGTTGTTGCTG+AGG 0.563220 3.1:-70109477 MS.gene73739:CDS
AAGCGGAACTTGAGGGTCGG+GGG 0.565688 3.1:+70110228 None:intergenic
GAAGTATCTGGGTAGTGTGA+TGG 0.565886 3.1:+70110275 None:intergenic
AAAGGTGATGGAGGAGAAGA+CGG 0.568206 3.1:+70110033 None:intergenic
AATTGTGGAGCTCGACGCCA+TGG 0.568707 3.1:-70109960 MS.gene73739:CDS
ATCATTGCTGACAGGAGCGT+TGG 0.573157 3.1:+70110138 None:intergenic
ATGTTGGAAGATGAGGAGAA+AGG 0.574571 3.1:-70109497 MS.gene73739:CDS
TGCTGTTATGTTGGAAGATG+AGG 0.574860 3.1:-70109504 MS.gene73739:CDS
TCATATGCCTGCTGTTATGT+TGG 0.575110 3.1:-70109513 MS.gene73739:CDS
TTGCAGTGGATGAAGTATCT+GGG 0.575606 3.1:+70110264 None:intergenic
CGGATGCACATGAGAGCACA+CGG 0.577893 3.1:-70109869 MS.gene73739:CDS
AACGGACACGAGAACCGTGT+TGG 0.584128 3.1:+70109791 None:intergenic
TTCGCAATCGGAATCTTCCA+CGG 0.585611 3.1:+70109982 None:intergenic
CGGCGGCGTTGACTATGGTA+TGG 0.588110 3.1:+70110074 None:intergenic
GGCAATGTGGTGAGTCTAAG+TGG 0.591829 3.1:-70109604 MS.gene73739:CDS
GTTGTTGTTGACTGAATCAA+AGG 0.592805 3.1:+70110015 None:intergenic
GGTGATGGATTGGGACAGGA+AGG 0.593615 3.1:+70110162 None:intergenic
ATGTTCAGCTAGCAATTCCA+TGG 0.594022 3.1:+70109943 None:intergenic
CCGAAGCGGAACTTGAGGGT+CGG 0.601485 3.1:+70110225 None:intergenic
CCGTGCGTCGTCGTCCAACA+CGG 0.603358 3.1:-70109805 MS.gene73739:CDS
GACTATGGTATGGTGGAGGA+CGG 0.605416 3.1:+70110084 None:intergenic
CCGTGTTGGACGACGACGCA+CGG 0.605601 3.1:+70109805 None:intergenic
TCTAAGTGGAAGTGTTCTTG+TGG 0.613240 3.1:-70109590 MS.gene73739:CDS
CTCCATTTCTGCGAGATATG+CGG 0.627013 3.1:-70109920 MS.gene73739:CDS
AAAGATTTGGTTGGAGACGG+CGG 0.627067 3.1:+70110108 None:intergenic
GTTGACTGAATCAAAGGTGA+TGG 0.628225 3.1:+70110021 None:intergenic
CGGCGTTGACTATGGTATGG+TGG 0.628323 3.1:+70110077 None:intergenic
CGTTGACTATGGTATGGTGG+AGG 0.634509 3.1:+70110080 None:intergenic
GACTGAATCAAAGGTGATGG+AGG 0.635823 3.1:+70110024 None:intergenic
ATCGATGCTTGTCTGAACCA+AGG 0.654173 3.1:+70110195 None:intergenic
CGGGAATCAGTTCAAGACGC+CGG 0.682583 3.1:-70109849 MS.gene73739:CDS
GGATGCACATGAGAGCACAC+GGG 0.701290 3.1:-70109868 MS.gene73739:CDS
ACCAAGGATAGATTCCGAAG+CGG 0.716599 3.1:+70110211 None:intergenic
GCAATCGGAATCTTCCACGG+CGG 0.729614 3.1:+70109985 None:intergenic
GGTGATGGAGGAGAAGACGG+AGG 0.738851 3.1:+70110036 None:intergenic
AAGAGTCATATGAGGCAATG+TGG 0.740474 3.1:-70109617 MS.gene73739:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGCTTTGATGAAATTTT+GGG - chr3.1:70110282-70110301 MS.gene73739:CDS 20.0%
! TAAAGATGATGAAATTGGTA+TGG - chr3.1:70110221-70110240 MS.gene73739:CDS 25.0%
!! AAGAGTTCTTTCATGATTTT+GGG - chr3.1:70110247-70110266 MS.gene73739:CDS 25.0%
!! CTATTGCTTTGATGAAATTT+TGG - chr3.1:70110281-70110300 MS.gene73739:CDS 25.0%
!!! GAAATTCAAAGCATTGAAAT+CGG - chr3.1:70109906-70109925 MS.gene73739:CDS 25.0%
AGATTACACGAATACATCTT+CGG + chr3.1:70109970-70109989 None:intergenic 30.0%
GAAGAATTATTCGATGCTTT+CGG - chr3.1:70109999-70110018 MS.gene73739:CDS 30.0%
TCGAGTAAAGATGATGAAAT+TGG - chr3.1:70110216-70110235 MS.gene73739:CDS 30.0%
TTTCTGTTACATCCTTCAAA+CGG + chr3.1:70109874-70109893 None:intergenic 30.0%
! GAAGAGTTCTTTCATGATTT+TGG - chr3.1:70110246-70110265 MS.gene73739:CDS 30.0%
GAATGAAGATCCTATGGAAA+TGG - chr3.1:70110191-70110210 MS.gene73739:CDS 35.0%
GTTAATTGATCATTGCTGAC+AGG + chr3.1:70109517-70109536 None:intergenic 35.0%
TCTAGGAAGGATAAGTTGTT+TGG - chr3.1:70110087-70110106 MS.gene73739:CDS 35.0%
! GTATTAGTTGGATTTTGCAG+TGG + chr3.1:70109397-70109416 None:intergenic 35.0%
! GTTGTTGTTGACTGAATCAA+AGG + chr3.1:70109632-70109651 None:intergenic 35.0%
AAGAGTCATATGAGGCAATG+TGG - chr3.1:70110027-70110046 MS.gene73739:CDS 40.0%
AAGTATCTGGGTAGTGTGAT+GGG + chr3.1:70109371-70109390 None:intergenic 40.0%
AGATTCCGATTGCGAAATTG+TGG - chr3.1:70109669-70109688 MS.gene73739:CDS 40.0%
ATGTTCAGCTAGCAATTCCA+TGG + chr3.1:70109704-70109723 None:intergenic 40.0%
ATGTTGGAAGATGAGGAGAA+AGG - chr3.1:70110147-70110166 MS.gene73739:CDS 40.0%
CGGATTTGAAGAGTCATATG+AGG - chr3.1:70110019-70110038 MS.gene73739:CDS 40.0%
GTGTGAAGACTCATTTCAAG+AGG - chr3.1:70109935-70109954 MS.gene73739:CDS 40.0%
GTTGACTGAATCAAAGGTGA+TGG + chr3.1:70109626-70109645 None:intergenic 40.0%
TCATATGCCTGCTGTTATGT+TGG - chr3.1:70110131-70110150 MS.gene73739:CDS 40.0%
TCATCTTCCAACATAACAGC+AGG + chr3.1:70110141-70110160 None:intergenic 40.0%
TGAGGAGAATGAAGATCCTA+TGG - chr3.1:70110185-70110204 MS.gene73739:CDS 40.0%
TGCTGTTATGTTGGAAGATG+AGG - chr3.1:70110140-70110159 MS.gene73739:CDS 40.0%
TGTTGGAAGATGAGGAGAAA+GGG - chr3.1:70110148-70110167 MS.gene73739:CDS 40.0%
! TTACTCGATGCCATTTCCAT+AGG + chr3.1:70110204-70110223 None:intergenic 40.0%
! TTGCAGTGGATGAAGTATCT+GGG + chr3.1:70109383-70109402 None:intergenic 40.0%
! TTTGCAGTGGATGAAGTATC+TGG + chr3.1:70109384-70109403 None:intergenic 40.0%
!! CTAAGTGGAAGTGTTCTTGT+GGG - chr3.1:70110055-70110074 MS.gene73739:CDS 40.0%
!! GGACATGTTGCTTTGTTTGA+GGG - chr3.1:70110108-70110127 MS.gene73739:CDS 40.0%
!! TCTAAGTGGAAGTGTTCTTG+TGG - chr3.1:70110054-70110073 MS.gene73739:CDS 40.0%
!! TGGACATGTTGCTTTGTTTG+AGG - chr3.1:70110107-70110126 MS.gene73739:CDS 40.0%
!!! CTTGTGGGAGTACTTTTTCT+AGG - chr3.1:70110070-70110089 MS.gene73739:CDS 40.0%
!!! TGGGAGTACTTTTTCTAGGA+AGG - chr3.1:70110074-70110093 MS.gene73739:CDS 40.0%
AAAGGCTTCGCTAAAGCTTC+CGG + chr3.1:70109817-70109836 None:intergenic 45.0%
ACCAAGGATAGATTCCGAAG+CGG + chr3.1:70109436-70109455 None:intergenic 45.0%
ATCGATGCTTGTCTGAACCA+AGG + chr3.1:70109452-70109471 None:intergenic 45.0%
CTCCATTTCTGCGAGATATG+CGG - chr3.1:70109724-70109743 MS.gene73739:CDS 45.0%
GAGCTCCACAATTTCGCAAT+CGG + chr3.1:70109677-70109696 None:intergenic 45.0%
TTCGCAATCGGAATCTTCCA+CGG + chr3.1:70109665-70109684 None:intergenic 45.0%
! AAAGATTTGGTTGGAGACGG+CGG + chr3.1:70109539-70109558 None:intergenic 45.0%
! GAAGTATCTGGGTAGTGTGA+TGG + chr3.1:70109372-70109391 None:intergenic 45.0%
! GACTGAATCAAAGGTGATGG+AGG + chr3.1:70109623-70109642 None:intergenic 45.0%
! GGCAAAGATTTGGTTGGAGA+CGG + chr3.1:70109542-70109561 None:intergenic 45.0%
!! AAAGGTGATGGAGGAGAAGA+CGG + chr3.1:70109614-70109633 None:intergenic 45.0%
AGATTCCGAAGCGGAACTTG+AGG + chr3.1:70109427-70109446 None:intergenic 50.0%
AGGGAAGCAAGTTGTTGCTG+AGG - chr3.1:70110167-70110186 MS.gene73739:CDS 50.0%
GATTCCGAAGCGGAACTTGA+GGG + chr3.1:70109426-70109445 None:intergenic 50.0%
GGCAATGTGGTGAGTCTAAG+TGG - chr3.1:70110040-70110059 MS.gene73739:CDS 50.0%
TCCGCTTCGGAATCTATCCT+TGG - chr3.1:70109432-70109451 MS.gene73739:CDS 50.0%
TGCCGCATATCTCGCAGAAA+TGG + chr3.1:70109729-70109748 None:intergenic 50.0%
TTCTGCGAGATATGCGGCAA+AGG - chr3.1:70109730-70109749 MS.gene73739:CDS 50.0%
! ATCATTGCTGACAGGAGCGT+TGG + chr3.1:70109509-70109528 None:intergenic 50.0%
! CGTTGACTATGGTATGGTGG+AGG + chr3.1:70109567-70109586 None:intergenic 50.0%
! GACTATGGTATGGTGGAGGA+CGG + chr3.1:70109563-70109582 None:intergenic 50.0%
! GAGGACGGCAAAGATTTGGT+TGG + chr3.1:70109548-70109567 None:intergenic 50.0%
! GGGTAGTGTGATGGGAATCT+GGG + chr3.1:70109363-70109382 None:intergenic 50.0%
! GTGTGATGGGAATCTGGGTT+CGG + chr3.1:70109358-70109377 None:intergenic 50.0%
! TGGATTGGGACAGGAAGGTT+CGG + chr3.1:70109480-70109499 None:intergenic 50.0%
! TGGGTAGTGTGATGGGAATC+TGG + chr3.1:70109364-70109383 None:intergenic 50.0%
!! AGCGTTGGTGGTGATGGATT+GGG + chr3.1:70109494-70109513 None:intergenic 50.0%
AACGGACACGAGAACCGTGT+TGG + chr3.1:70109856-70109875 None:intergenic 55.0%
AATTGTGGAGCTCGACGCCA+TGG - chr3.1:70109684-70109703 MS.gene73739:CDS 55.0%
CGGGAATCAGTTCAAGACGC+CGG - chr3.1:70109795-70109814 MS.gene73739:CDS 55.0%
CGGTTCTCGTGTCCGTTTGA+AGG - chr3.1:70109859-70109878 MS.gene73739:CDS 55.0%
CGTGTGCTCTCATGTGCATC+CGG + chr3.1:70109777-70109796 None:intergenic 55.0%
GCAATCGGAATCTTCCACGG+CGG + chr3.1:70109662-70109681 None:intergenic 55.0%
GGTGGAGGACGGCAAAGATT+TGG + chr3.1:70109552-70109571 None:intergenic 55.0%
! CGGATGCACATGAGAGCACA+CGG - chr3.1:70109775-70109794 MS.gene73739:CDS 55.0%
! GGATGCACATGAGAGCACAC+GGG - chr3.1:70109776-70109795 MS.gene73739:CDS 55.0%
!! ATTGCTGACAGGAGCGTTGG+TGG + chr3.1:70109506-70109525 None:intergenic 55.0%
!! CGGCGTTGACTATGGTATGG+TGG + chr3.1:70109570-70109589 None:intergenic 55.0%
!! GAGCGTTGGTGGTGATGGAT+TGG + chr3.1:70109495-70109514 None:intergenic 55.0%
!! GGTGATGGATTGGGACAGGA+AGG + chr3.1:70109485-70109504 None:intergenic 55.0%
!! TGAGGGTCGGGGGTATTAGT+TGG + chr3.1:70109409-70109428 None:intergenic 55.0%
!! TGGTGGTGATGGATTGGGAC+AGG + chr3.1:70109489-70109508 None:intergenic 55.0%
AAGCGGAACTTGAGGGTCGG+GGG + chr3.1:70109419-70109438 None:intergenic 60.0%
AATCTTCCACGGCGGTGAGG+GGG + chr3.1:70109654-70109673 None:intergenic 60.0%
CCGAAGCGGAACTTGAGGGT+CGG + chr3.1:70109422-70109441 None:intergenic 60.0%
CCGACCCTCAAGTTCCGCTT+CGG - chr3.1:70109419-70109438 MS.gene73739:CDS 60.0%
CGAAGCGGAACTTGAGGGTC+GGG + chr3.1:70109421-70109440 None:intergenic 60.0%
GAAGCGGAACTTGAGGGTCG+GGG + chr3.1:70109420-70109439 None:intergenic 60.0%
GAATCTTCCACGGCGGTGAG+GGG + chr3.1:70109655-70109674 None:intergenic 60.0%
GGAATCTTCCACGGCGGTGA+GGG + chr3.1:70109656-70109675 None:intergenic 60.0%
GGACGACGACGCACGGTTAA+AGG + chr3.1:70109835-70109854 None:intergenic 60.0%
TCAAGCGCGACGCGAATCTC+CGG - chr3.1:70109755-70109774 MS.gene73739:CDS 60.0%
!! CGGCGGCGTTGACTATGGTA+TGG + chr3.1:70109573-70109592 None:intergenic 60.0%
!! GACAGGAGCGTTGGTGGTGA+TGG + chr3.1:70109500-70109519 None:intergenic 60.0%
!! GGTGATGGAGGAGAAGACGG+AGG + chr3.1:70109611-70109630 None:intergenic 60.0%
CCGTGCGTCGTCGTCCAACA+CGG - chr3.1:70109839-70109858 MS.gene73739:CDS 65.0%
CCGTGTTGGACGACGACGCA+CGG + chr3.1:70109842-70109861 None:intergenic 65.0%
CGGAATCTTCCACGGCGGTG+AGG + chr3.1:70109657-70109676 None:intergenic 65.0%
! GGAGGAGAAGACGGAGGCAC+CGG + chr3.1:70109605-70109624 None:intergenic 65.0%
!! GAGGAGAAGACGGAGGCACC+GGG + chr3.1:70109604-70109623 None:intergenic 65.0%
CAACAACCCCCTCACCGCCG+TGG - chr3.1:70109645-70109664 MS.gene73739:CDS 70.0%
!! AGACGGAGGCACCGGGAACG+AGG + chr3.1:70109597-70109616 None:intergenic 70.0%
!! GACGGAGGCACCGGGAACGA+GGG + chr3.1:70109596-70109615 None:intergenic 70.0%
!! GAGGGCGGCGGCGTTGACTA+TGG + chr3.1:70109578-70109597 None:intergenic 70.0%
AACGCCGCCGCCCTCGTTCC+CGG - chr3.1:70109583-70109602 MS.gene73739:CDS 75.0%
!! GGAGGCACCGGGAACGAGGG+CGG + chr3.1:70109593-70109612 None:intergenic 75.0%
!! GGCACCGGGAACGAGGGCGG+CGG + chr3.1:70109590-70109609 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 70109346 70110320 70109346 ID=MS.gene73739
chr3.1 mRNA 70109346 70110320 70109346 ID=MS.gene73739.t1;Parent=MS.gene73739
chr3.1 exon 70109346 70110320 70109346 ID=MS.gene73739.t1.exon1;Parent=MS.gene73739.t1
chr3.1 CDS 70109346 70110320 70109346 ID=cds.MS.gene73739.t1;Parent=MS.gene73739.t1
Gene Sequence

>MS.gene73739

ATGTCTAATCCGAACCCAGATTCCCATCACACTACCCAGATACTTCATCCACTGCAAAATCCAACTAATACCCCCGACCCTCAAGTTCCGCTTCGGAATCTATCCTTGGTTCAGACAAGCATCGATTCTCTCCGAACCTTCCTGTCCCAATCCATCACCACCAACGCTCCTGTCAGCAATGATCAATTAACCGCCGTCTCCAACCAAATCTTTGCCGTCCTCCACCATACCATAGTCAACGCCGCCGCCCTCGTTCCCGGTGCCTCCGTCTTCTCCTCCATCACCTTTGATTCAGTCAACAACAACCCCCTCACCGCCGTGGAAGATTCCGATTGCGAAATTGTGGAGCTCGACGCCATGGAATTGCTAGCTGAACATCTCCATTTCTGCGAGATATGCGGCAAAGGCTTCAAGCGCGACGCGAATCTCCGGATGCACATGAGAGCACACGGGAATCAGTTCAAGACGCCGGAAGCTTTAGCGAAGCCTTTAACCGTGCGTCGTCGTCCAACACGGTTCTCGTGTCCGTTTGAAGGATGTAACAGAAACAAGAAGCATAAGAAATTCAAAGCATTGAAATCGGTGATTTGTGTGAAGACTCATTTCAAGAGGAGTCATTGTCCGAAGATGTATTCGTGTAATCTTTGTCGTAAGAAGAATTATTCGATGCTTTCGGATTTGAAGAGTCATATGAGGCAATGTGGTGAGTCTAAGTGGAAGTGTTCTTGTGGGAGTACTTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCTGTTATGTTGGAAGATGAGGAGAAAGGGAAGCAAGTTGTTGCTGAGGAGAATGAAGATCCTATGGAAATGGCATCGAGTAAAGATGATGAAATTGGTATGGATGAAGAGTTCTTTCATGATTTTGGGTCTATTGATAACTATTGCTTTGATGAAATTTTGGGATTTCGTCGTAGCTAG
Protein sequence

>MS.gene73739.t1

MSNPNPDSHHTTQILHPLQNPTNTPDPQVPLRNLSLVQTSIDSLRTFLSQSITTNAPVSNDQLTAVSNQIFAVLHHTIVNAAALVPGASVFSSITFDSVNNNPLTAVEDSDCEIVELDAMELLAEHLHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLTVRRRPTRFSCPFEGCNRNKKHKKFKALKSVICVKTHFKRSHCPKMYSCNLCRKKNYSMLSDLKSHMRQCGESKWKCSCGSTFSRKDKLFGHVALFEGHMPAVMLEDEEKGKQVVAEENEDPMEMASSKDDEIGMDEEFFHDFGSIDNYCFDEILGFRRS