Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73787.t1 | XP_003602063.1 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 7.60E-187 | 662.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73787.t1 | Q9XHZ8 | 68.1 | 323 | 101 | 2 | 4 | 326 | 5 | 325 | 2.4e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73787.t1 | G7J501 | 98.5 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 5.5e-187 | 662.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene73787.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73787.t1 | MTR_3g088560 | 98.471 | 327 | 5 | 0 | 1 | 327 | 1 | 327 | 0.0 | 674 |
| MS.gene73787.t1 | MTR_3g088560 | 97.951 | 244 | 5 | 0 | 84 | 327 | 14 | 257 | 3.29e-180 | 498 |
| MS.gene73787.t1 | MTR_3g088560 | 98.347 | 242 | 4 | 0 | 86 | 327 | 31 | 272 | 4.47e-179 | 496 |
| MS.gene73787.t1 | MTR_1g029850 | 73.171 | 328 | 81 | 4 | 1 | 323 | 1 | 326 | 4.23e-175 | 488 |
| MS.gene73787.t1 | MTR_3g088560 | 98.537 | 205 | 3 | 0 | 123 | 327 | 1 | 205 | 1.78e-150 | 421 |
| MS.gene73787.t1 | MTR_3g061090 | 51.250 | 320 | 152 | 4 | 4 | 321 | 7 | 324 | 1.25e-115 | 337 |
| MS.gene73787.t1 | MTR_5g096700 | 46.273 | 322 | 168 | 4 | 2 | 321 | 7 | 325 | 1.11e-96 | 289 |
| MS.gene73787.t1 | MTR_3g061090 | 50.598 | 251 | 121 | 3 | 72 | 321 | 4 | 252 | 1.96e-81 | 248 |
| MS.gene73787.t1 | MTR_5g096700 | 45.896 | 268 | 140 | 4 | 56 | 321 | 2 | 266 | 8.05e-74 | 229 |
| MS.gene73787.t1 | MTR_5g096790 | 36.747 | 332 | 178 | 11 | 5 | 321 | 8 | 322 | 7.80e-56 | 184 |
| MS.gene73787.t1 | MTR_7g094900 | 31.298 | 131 | 85 | 2 | 161 | 289 | 545 | 672 | 5.37e-12 | 67.0 |
| MS.gene73787.t1 | MTR_7g094910 | 31.298 | 131 | 85 | 2 | 161 | 289 | 526 | 653 | 7.64e-12 | 66.6 |
| MS.gene73787.t1 | MTR_3g088660 | 27.429 | 175 | 120 | 3 | 151 | 321 | 70 | 241 | 7.64e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73787.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.36e-163 | 459 |
| MS.gene73787.t1 | AT1G21780 | 67.890 | 327 | 102 | 3 | 1 | 326 | 1 | 325 | 1.36e-163 | 459 |
| MS.gene73787.t1 | AT1G55760 | 48.297 | 323 | 162 | 4 | 2 | 322 | 5 | 324 | 8.93e-111 | 325 |
| MS.gene73787.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.01e-14 | 73.6 |
| MS.gene73787.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.08e-14 | 73.6 |
| MS.gene73787.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 2.08e-14 | 73.6 |
| MS.gene73787.t1 | AT2G39760 | 33.108 | 148 | 88 | 1 | 151 | 287 | 184 | 331 | 3.81e-14 | 73.2 |
| MS.gene73787.t1 | AT5G13060 | 26.415 | 159 | 112 | 3 | 132 | 289 | 541 | 695 | 3.06e-11 | 64.7 |
| MS.gene73787.t1 | AT3G56230 | 27.219 | 169 | 117 | 4 | 157 | 321 | 107 | 273 | 8.63e-11 | 62.4 |
Find 64 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAATTAACTAAACTATTC+TGG | 0.154757 | 3.3:-73677338 | None:intergenic |
| TTAACATTCTTATTTGAATT+TGG | 0.187991 | 3.3:+73677212 | MS.gene73787:CDS |
| TTAGAAACTTTAGAAGGTTC+TGG | 0.232000 | 3.3:-73674664 | None:intergenic |
| CCCTATCTGCGTGCTGAAAA+AGG | 0.234948 | 3.3:-73677271 | None:intergenic |
| AGAACCTTCTAAAGTTTCTA+AGG | 0.261667 | 3.3:+73674666 | MS.gene73787:CDS |
| CATTCATATGGCATATCTTT+AGG | 0.265199 | 3.3:-73676154 | None:intergenic |
| CAATTAAACAAGTAGATTTC+AGG | 0.285069 | 3.3:+73677027 | MS.gene73787:CDS |
| ATCCTTTCAAGCTCGGAATC+TGG | 0.336252 | 3.3:+73674499 | MS.gene73787:CDS |
| CAAGTGACATGTCTTCAATA+TGG | 0.337240 | 3.3:-73676968 | None:intergenic |
| CGCAGATAGGGAGCTAGTTA+TGG | 0.364760 | 3.3:+73677283 | MS.gene73787:CDS |
| ATTCTTCGTGTCTCCGTCGC+TGG | 0.376900 | 3.3:+73674712 | MS.gene73787:CDS |
| ACAATTAACTAAACTATTCT+GGG | 0.384725 | 3.3:-73677337 | None:intergenic |
| CTCTCCAACCATGGCGGATA+GGG | 0.391213 | 3.3:+73674407 | None:intergenic |
| CGCAAGTTTATTGTTTCTCC+TGG | 0.392552 | 3.3:+73674742 | MS.gene73787:CDS |
| TGCTCCTTAGAAACTTTAGA+AGG | 0.406050 | 3.3:-73674670 | None:intergenic |
| GCAGCTAATAAGTATGATAT+TGG | 0.412726 | 3.3:+73677074 | MS.gene73787:CDS |
| GTCTATTGATACTGCTTTCG+TGG | 0.421744 | 3.3:+73676100 | MS.gene73787:CDS |
| CAGTTTATGAAAGGCTGCTT+AGG | 0.427187 | 3.3:+73676057 | MS.gene73787:intron |
| GCTTTGAAACACAGGAGAAC+TGG | 0.434742 | 3.3:-73676904 | None:intergenic |
| GCTCTTCGAAGTTACTTGTA+TGG | 0.435203 | 3.3:+73677002 | MS.gene73787:CDS |
| GGACACAAGATGACTTTGTC+TGG | 0.443732 | 3.3:+73676078 | MS.gene73787:CDS |
| AAACACTGTCTTGCATTGCT+TGG | 0.456346 | 3.3:+73677050 | MS.gene73787:CDS |
| TAGCATCTCAAGAACATTGT+CGG | 0.467745 | 3.3:-73677144 | None:intergenic |
| CGGAGTTAATATCTTCAAGA+AGG | 0.472730 | 3.3:-73677124 | None:intergenic |
| CCTCATCGAGCATGCGGGAG+AGG | 0.478741 | 3.3:-73676812 | None:intergenic |
| TTAACTAAACTATTCTGGGT+TGG | 0.479406 | 3.3:-73677333 | None:intergenic |
| AGGAGAAACAATAAACTTGC+GGG | 0.481416 | 3.3:-73674740 | None:intergenic |
| CGAAGAATGAAACGAGCAAC+GGG | 0.482830 | 3.3:-73674697 | None:intergenic |
| ATTAGAAACTCACATTCATA+TGG | 0.483383 | 3.3:-73676166 | None:intergenic |
| TTGAGATGCTAAATGAGGCT+TGG | 0.487814 | 3.3:+73677156 | MS.gene73787:CDS |
| CGAGCATGCGGGAGAGGCAA+TGG | 0.488185 | 3.3:-73676806 | None:intergenic |
| CAGTTACACAAGTTAAAGAA+AGG | 0.488458 | 3.3:+73677185 | MS.gene73787:CDS |
| TCAAGCTCGGAATCTGGAAC+TGG | 0.498675 | 3.3:+73674505 | MS.gene73787:CDS |
| AAATCTGATCCTTTCAAGCT+CGG | 0.501085 | 3.3:+73674492 | MS.gene73787:CDS |
| TCTCTCCAACCATGGCGGAT+AGG | 0.511002 | 3.3:+73674406 | None:intergenic |
| CATCGGCAGTGACAATGGTT+AGG | 0.526389 | 3.3:-73676848 | None:intergenic |
| GTAACTTCGAAGAGCAGTGC+AGG | 0.535264 | 3.3:-73676994 | None:intergenic |
| TGTTCTTGAGATGCTAAATG+AGG | 0.536700 | 3.3:+73677151 | MS.gene73787:CDS |
| TTCCAGATTCCGAGCTTGAA+AGG | 0.545788 | 3.3:-73674501 | None:intergenic |
| GCTAATAAGTATGATATTGG+TGG | 0.561832 | 3.3:+73677077 | MS.gene73787:CDS |
| AGTTCTATATGGTCATCTGA+TGG | 0.568409 | 3.3:+73676747 | MS.gene73787:CDS |
| GCTTGTATGCAGTTTATGAA+AGG | 0.570227 | 3.3:+73676048 | MS.gene73787:intron |
| TCTATTGATACTGCTTTCGT+GGG | 0.572445 | 3.3:+73676101 | MS.gene73787:CDS |
| GTGGTGAACCTAGTTCTATA+TGG | 0.574017 | 3.3:+73676736 | MS.gene73787:CDS |
| TCAGATGACCATATAGAACT+AGG | 0.576491 | 3.3:-73676744 | None:intergenic |
| GTGAGCTCTCAATGTACCAT+CGG | 0.581782 | 3.3:-73676865 | None:intergenic |
| TGTACCATCGGCAGTGACAA+TGG | 0.586089 | 3.3:-73676853 | None:intergenic |
| TGGTACATTGAGAGCTCACA+AGG | 0.587134 | 3.3:+73676869 | MS.gene73787:CDS |
| TATAGCCTCATCGAGCATGC+GGG | 0.592694 | 3.3:-73676817 | None:intergenic |
| ATTCAACATCAATGATGAAG+CGG | 0.594685 | 3.3:-73676124 | None:intergenic |
| TGAAACATGCTTTGAAACAC+AGG | 0.596849 | 3.3:-73676912 | None:intergenic |
| GTATAGCCTCATCGAGCATG+CGG | 0.598283 | 3.3:-73676818 | None:intergenic |
| CCTCTCCCGCATGCTCGATG+AGG | 0.599409 | 3.3:+73676812 | MS.gene73787:CDS |
| CTAACCATTGTCACTGCCGA+TGG | 0.602095 | 3.3:+73676849 | MS.gene73787:CDS |
| CAATGGAAAATCGAAAACTT+CGG | 0.614285 | 3.3:+73674453 | MS.gene73787:CDS |
| CATGTTTCATCACAACCTGA+AGG | 0.618326 | 3.3:+73676926 | MS.gene73787:CDS |
| CAGGAGAAACAATAAACTTG+CGG | 0.623649 | 3.3:-73674741 | None:intergenic |
| AGAATGAAACGAGCAACGGG+TGG | 0.627136 | 3.3:-73674694 | None:intergenic |
| AGTGTCAACCCTATCCGCCA+TGG | 0.645297 | 3.3:-73674415 | None:intergenic |
| ACGAAGAATGAAACGAGCAA+CGG | 0.645922 | 3.3:-73674698 | None:intergenic |
| GAATGAAACGAGCAACGGGT+GGG | 0.646859 | 3.3:-73674693 | None:intergenic |
| CTGTTGCAAGATTAGCACAA+TGG | 0.667299 | 3.3:+73674436 | MS.gene73787:CDS |
| CTTGCGGGAAGAACCAGCGA+CGG | 0.710933 | 3.3:-73674725 | None:intergenic |
| TGGTCTGAAAGATTTATGTG+AGG | 0.733733 | 3.3:+73677097 | MS.gene73787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATAATTTTGATATAAAAA+AGG | - | chr3.3:73676574-73676593 | None:intergenic | 10.0% |
| !! | TTTGTATTAATGTGATAAAA+CGG | + | chr3.3:73674834-73674853 | MS.gene73787:intron | 15.0% |
| !!! | GTAATTTTTTTTCATATAGA+TGG | + | chr3.3:73674872-73674891 | MS.gene73787:intron | 15.0% |
| !!! | TTAACATTCTTATTTGAATT+TGG | + | chr3.3:73677212-73677231 | MS.gene73787:CDS | 15.0% |
| !! | CAAAATTATAGCAATTATTC+CGG | + | chr3.3:73676583-73676602 | MS.gene73787:intron | 20.0% |
| !!! | ATTTAAAATAGTCTAAGTAG+TGG | - | chr3.3:73676538-73676557 | None:intergenic | 20.0% |
| !!! | TTCAATTCGTTTTTTTTTTC+AGG | + | chr3.3:73674596-73674615 | MS.gene73787:intron | 20.0% |
| ! | AAACGACACTTTAGTAATTA+GGG | - | chr3.3:73675787-73675806 | None:intergenic | 25.0% |
| ! | AACAGTACTATTTGATATCT+TGG | - | chr3.3:73675379-73675398 | None:intergenic | 25.0% |
| ! | AACTGGAAAAATGAAAGAAA+AGG | + | chr3.3:73676409-73676428 | MS.gene73787:intron | 25.0% |
| ! | AAGAATTGAGAATATCTAGA+AGG | + | chr3.3:73675263-73675282 | MS.gene73787:intron | 25.0% |
| ! | ACAGTACTATTTGATATCTT+GGG | - | chr3.3:73675378-73675397 | None:intergenic | 25.0% |
| ! | ACATACAAATTTACGTTAGA+TGG | - | chr3.3:73675666-73675685 | None:intergenic | 25.0% |
| ! | ACTGGAAAAATGAAAGAAAA+GGG | + | chr3.3:73676410-73676429 | MS.gene73787:intron | 25.0% |
| ! | ATTAGAAACTCACATTCATA+TGG | - | chr3.3:73676169-73676188 | None:intergenic | 25.0% |
| ! | CAATTAAACAAGTAGATTTC+AGG | + | chr3.3:73677027-73677046 | MS.gene73787:CDS | 25.0% |
| ! | CGAATTTATCCAAATTAGAA+TGG | + | chr3.3:73675581-73675600 | MS.gene73787:intron | 25.0% |
| ! | GAGTTAGAAATTCATAATTC+TGG | - | chr3.3:73674901-73674920 | None:intergenic | 25.0% |
| ! | GTATTTGAGAAAACAAGTAT+AGG | - | chr3.3:73676193-73676212 | None:intergenic | 25.0% |
| ! | TATTCGAAATCTGGTAAATT+CGG | - | chr3.3:73675615-73675634 | None:intergenic | 25.0% |
| ! | TCAAATACCAATATTGATGT+AGG | + | chr3.3:73676205-73676224 | MS.gene73787:intron | 25.0% |
| !! | AACAAAAAACGAAAAAGTGT+TGG | - | chr3.3:73674783-73674802 | None:intergenic | 25.0% |
| !! | ACTTTTCAATAGTAAGGAAT+AGG | + | chr3.3:73674620-73674639 | MS.gene73787:CDS | 25.0% |
| !! | AGATAATCCAGTAAATTTTG+TGG | - | chr3.3:73676354-73676373 | None:intergenic | 25.0% |
| !! | GCATTTTCATACACATTTAA+TGG | + | chr3.3:73674922-73674941 | MS.gene73787:intron | 25.0% |
| !! | GCTTACTTGATTTGAAATTA+GGG | + | chr3.3:73675521-73675540 | MS.gene73787:intron | 25.0% |
| !! | TGCTTACTTGATTTGAAATT+AGG | + | chr3.3:73675520-73675539 | MS.gene73787:intron | 25.0% |
| !! | TGTATTTGATAACCTTGATT+AGG | + | chr3.3:73675703-73675722 | MS.gene73787:intron | 25.0% |
| !!! | GTTTTGAAACCATTCTAATT+TGG | - | chr3.3:73675593-73675612 | None:intergenic | 25.0% |
| !!! | TCAGATTTTTTGTAAGAACA+AGG | - | chr3.3:73674480-73674499 | None:intergenic | 25.0% |
| AAAACGGTAAAGTTTGTGTA+TGG | + | chr3.3:73674850-73674869 | MS.gene73787:intron | 30.0% | |
| AAATGAAAGAAAAGGGTTGT+TGG | + | chr3.3:73676417-73676436 | MS.gene73787:intron | 30.0% | |
| AAGATCGCTAAAAAGTTACA+CGG | - | chr3.3:73676274-73676293 | None:intergenic | 30.0% | |
| AATACCAATATTGATGTAGG+TGG | + | chr3.3:73676208-73676227 | MS.gene73787:intron | 30.0% | |
| AATATTGTCAATTGGAATCG+TGG | + | chr3.3:73676465-73676484 | MS.gene73787:intron | 30.0% | |
| AATTATAGCAATTATTCCGG+AGG | + | chr3.3:73676586-73676605 | MS.gene73787:intron | 30.0% | |
| ACATAAAGATGCAATGATCA+AGG | - | chr3.3:73675901-73675920 | None:intergenic | 30.0% | |
| ATATAATGAAATGCTGATCC+AGG | + | chr3.3:73676013-73676032 | MS.gene73787:intron | 30.0% | |
| ATATTGTCAATTGGAATCGT+GGG | + | chr3.3:73676466-73676485 | MS.gene73787:intron | 30.0% | |
| ATCTTACTAGCTATTGTACT+CGG | + | chr3.3:73675294-73675313 | MS.gene73787:intron | 30.0% | |
| ATTATTCAACGAATGCGAAA+CGG | - | chr3.3:73675081-73675100 | None:intergenic | 30.0% | |
| ATTCAACATCAATGATGAAG+CGG | - | chr3.3:73676127-73676146 | None:intergenic | 30.0% | |
| CAAACGACACTTTAGTAATT+AGG | - | chr3.3:73675788-73675807 | None:intergenic | 30.0% | |
| CAATGGAAAATCGAAAACTT+CGG | + | chr3.3:73674453-73674472 | MS.gene73787:CDS | 30.0% | |
| CAGTTACACAAGTTAAAGAA+AGG | + | chr3.3:73677185-73677204 | MS.gene73787:CDS | 30.0% | |
| CATTCATATGGCATATCTTT+AGG | - | chr3.3:73676157-73676176 | None:intergenic | 30.0% | |
| CTAGATATTCTCAATTCTTG+CGG | - | chr3.3:73675262-73675281 | None:intergenic | 30.0% | |
| GCAGCTAATAAGTATGATAT+TGG | + | chr3.3:73677074-73677093 | MS.gene73787:CDS | 30.0% | |
| GCTAATAAGTATGATATTGG+TGG | + | chr3.3:73677077-73677096 | MS.gene73787:CDS | 30.0% | |
| GTCTCTAATAGAAATTGACT+CGG | + | chr3.3:73675725-73675744 | MS.gene73787:intron | 30.0% | |
| GTGTGCAAAATATTGTCAAT+TGG | + | chr3.3:73676457-73676476 | MS.gene73787:intron | 30.0% | |
| TCACTTGTATATTCGAAATC+TGG | - | chr3.3:73675624-73675643 | None:intergenic | 30.0% | |
| TTATGTGCTATGAGGAAATA+CGG | + | chr3.3:73675915-73675934 | MS.gene73787:intron | 30.0% | |
| TTCATATTGCATCCTCAATT+TGG | + | chr3.3:73675943-73675962 | MS.gene73787:intron | 30.0% | |
| TTCTATTAGAGACCTAATCA+AGG | - | chr3.3:73675718-73675737 | None:intergenic | 30.0% | |
| TTTGCCATTGCAATTATCTA+TGG | + | chr3.3:73675977-73675996 | MS.gene73787:intron | 30.0% | |
| ! | GATCTATTCTTTTGAACTCA+GGG | + | chr3.3:73676714-73676733 | MS.gene73787:intron | 30.0% |
| ! | TCAGGTACTTTTCAATAGTA+AGG | + | chr3.3:73674614-73674633 | MS.gene73787:intron | 30.0% |
| ! | TGATCTATTCTTTTGAACTC+AGG | + | chr3.3:73676713-73676732 | MS.gene73787:intron | 30.0% |
| ! | TGTTTTGCATGCATTATAAC+TGG | + | chr3.3:73676392-73676411 | MS.gene73787:intron | 30.0% |
| ! | TTAGAAACTTTAGAAGGTTC+TGG | - | chr3.3:73674667-73674686 | None:intergenic | 30.0% |
| !! | AGAACCTTCTAAAGTTTCTA+AGG | + | chr3.3:73674666-73674685 | MS.gene73787:CDS | 30.0% |
| !! | TAGTCTAAGTAGTGGATAAT+AGG | - | chr3.3:73676530-73676549 | None:intergenic | 30.0% |
| AAAATATGATACCAGTGCAG+AGG | - | chr3.3:73676679-73676698 | None:intergenic | 35.0% | |
| AAATCTGATCCTTTCAAGCT+CGG | + | chr3.3:73674492-73674511 | MS.gene73787:CDS | 35.0% | |
| ACAAGCAAACAAAAATGACC+TGG | - | chr3.3:73676034-73676053 | None:intergenic | 35.0% | |
| ACTGCCATAGATAATTGCAA+TGG | - | chr3.3:73675984-73676003 | None:intergenic | 35.0% | |
| AGGAGAAACAATAAACTTGC+GGG | - | chr3.3:73674743-73674762 | None:intergenic | 35.0% | |
| AGTGGATAATAGGAAGTTCA+CGG | - | chr3.3:73676520-73676539 | None:intergenic | 35.0% | |
| AGTTCTATATGGTCATCTGA+TGG | + | chr3.3:73676747-73676766 | MS.gene73787:CDS | 35.0% | |
| ATTCCTCATTTGCCAAATTG+AGG | - | chr3.3:73675958-73675977 | None:intergenic | 35.0% | |
| CAAGTGACATGTCTTCAATA+TGG | - | chr3.3:73676971-73676990 | None:intergenic | 35.0% | |
| CAGGAGAAACAATAAACTTG+CGG | - | chr3.3:73674744-73674763 | None:intergenic | 35.0% | |
| CGATCATCTTCAACAATACT+CGG | - | chr3.3:73675050-73675069 | None:intergenic | 35.0% | |
| CGGAGTTAATATCTTCAAGA+AGG | - | chr3.3:73677127-73677146 | None:intergenic | 35.0% | |
| CTGGATTATCTTGTGTATTG+TGG | + | chr3.3:73676363-73676382 | MS.gene73787:intron | 35.0% | |
| CTGTTTGATTACCAATACAC+AGG | + | chr3.3:73676296-73676315 | MS.gene73787:intron | 35.0% | |
| GCATAGAATACCATTTCAAG+CGG | - | chr3.3:73675861-73675880 | None:intergenic | 35.0% | |
| GCTTGTATGCAGTTTATGAA+AGG | + | chr3.3:73676048-73676067 | MS.gene73787:intron | 35.0% | |
| GGCTATAGGAAAATAACACA+TGG | + | chr3.3:73675146-73675165 | MS.gene73787:intron | 35.0% | |
| TAAGCCACCTACATCAATAT+TGG | - | chr3.3:73676215-73676234 | None:intergenic | 35.0% | |
| TACAAGACTCAAACACCTTA+AGG | + | chr3.3:73675205-73675224 | MS.gene73787:intron | 35.0% | |
| TAGCATCTCAAGAACATTGT+CGG | - | chr3.3:73677147-73677166 | None:intergenic | 35.0% | |
| TCAGATGACCATATAGAACT+AGG | - | chr3.3:73676747-73676766 | None:intergenic | 35.0% | |
| TCTATTGATACTGCTTTCGT+GGG | + | chr3.3:73676101-73676120 | MS.gene73787:CDS | 35.0% | |
| TCTCTATCCAATGTCTTAGA+CGG | + | chr3.3:73675809-73675828 | MS.gene73787:intron | 35.0% | |
| TGATGTGCCACAAAATTTAC+TGG | + | chr3.3:73676344-73676363 | MS.gene73787:intron | 35.0% | |
| TGCTCCTTAGAAACTTTAGA+AGG | - | chr3.3:73674673-73674692 | None:intergenic | 35.0% | |
| TGGTCTGAAAGATTTATGTG+AGG | + | chr3.3:73677097-73677116 | MS.gene73787:CDS | 35.0% | |
| TGGTGCATATTTACTTTACC+AGG | - | chr3.3:73674763-73674782 | None:intergenic | 35.0% | |
| TGTTCTTGAGATGCTAAATG+AGG | + | chr3.3:73677151-73677170 | MS.gene73787:CDS | 35.0% | |
| TTAGGAAATTCCGCTTGAAA+TGG | + | chr3.3:73675848-73675867 | MS.gene73787:intron | 35.0% | |
| TTGAAATGGTATTCTATGCC+TGG | + | chr3.3:73675862-73675881 | MS.gene73787:intron | 35.0% | |
| TTGCATCTTTATGTGCTATG+AGG | + | chr3.3:73675907-73675926 | MS.gene73787:intron | 35.0% | |
| ! | CGAGTATTGTTGAAGATGAT+CGG | + | chr3.3:73675048-73675067 | MS.gene73787:intron | 35.0% |
| ! | TGTTTCTGTTATGGTCCATA+TGG | + | chr3.3:73675111-73675130 | MS.gene73787:intron | 35.0% |
| ! | TTATTTTCCTATAGCCCACA+TGG | - | chr3.3:73675142-73675161 | None:intergenic | 35.0% |
| !! | AGGTTCTGGAAAAAGATGAA+TGG | - | chr3.3:73674653-73674672 | None:intergenic | 35.0% |
| !! | CTATTGTACTCGGTTTGTTA+GGG | + | chr3.3:73675304-73675323 | MS.gene73787:intron | 35.0% |
| !! | TGAAACATGCTTTGAAACAC+AGG | - | chr3.3:73676915-73676934 | None:intergenic | 35.0% |
| AAACACTGTCTTGCATTGCT+TGG | + | chr3.3:73677050-73677069 | MS.gene73787:CDS | 40.0% | |
| AACATGCAAGTCCTGTGTAT+TGG | - | chr3.3:73676310-73676329 | None:intergenic | 40.0% | |
| AAGAGTCAACTCCTCAAGTT+AGG | + | chr3.3:73675169-73675188 | MS.gene73787:intron | 40.0% | |
| ACAATACTCGGTAGCATTTG+TGG | - | chr3.3:73675038-73675057 | None:intergenic | 40.0% | |
| ACGAAGAATGAAACGAGCAA+CGG | - | chr3.3:73674701-73674720 | None:intergenic | 40.0% | |
| AGAGTCAACTCCTCAAGTTA+GGG | + | chr3.3:73675170-73675189 | MS.gene73787:intron | 40.0% | |
| ATGCAATGATCAAGGAAGAC+AGG | - | chr3.3:73675893-73675912 | None:intergenic | 40.0% | |
| CAGTGTCAGTTCTGTATACA+GGG | - | chr3.3:73676654-73676673 | None:intergenic | 40.0% | |
| CAGTTTATGAAAGGCTGCTT+AGG | + | chr3.3:73676057-73676076 | MS.gene73787:intron | 40.0% | |
| CATCCTCAATTTGGCAAATG+AGG | + | chr3.3:73675952-73675971 | MS.gene73787:intron | 40.0% | |
| CATGTTTCATCACAACCTGA+AGG | + | chr3.3:73676926-73676945 | MS.gene73787:CDS | 40.0% | |
| CTATTCAAGAGATCATCCTC+CGG | - | chr3.3:73676605-73676624 | None:intergenic | 40.0% | |
| CTGTTGCAAGATTAGCACAA+TGG | + | chr3.3:73674436-73674455 | MS.gene73787:CDS | 40.0% | |
| GCTCTTCGAAGTTACTTGTA+TGG | + | chr3.3:73677002-73677021 | MS.gene73787:CDS | 40.0% | |
| GGATCGACTATAGTGATCTT+AGG | + | chr3.3:73675830-73675849 | MS.gene73787:intron | 40.0% | |
| GTCTATTGATACTGCTTTCG+TGG | + | chr3.3:73676100-73676119 | MS.gene73787:CDS | 40.0% | |
| GTGGATAATAGGAAGTTCAC+GGG | - | chr3.3:73676519-73676538 | None:intergenic | 40.0% | |
| TAGGCTGCACATAATCCTTA+AGG | - | chr3.3:73675223-73675242 | None:intergenic | 40.0% | |
| TCAGTGTCAGTTCTGTATAC+AGG | - | chr3.3:73676655-73676674 | None:intergenic | 40.0% | |
| TGCAATGATCAAGGAAGACA+GGG | - | chr3.3:73675892-73675911 | None:intergenic | 40.0% | |
| TTAAGGATTATGTGCAGCCT+AGG | + | chr3.3:73675222-73675241 | MS.gene73787:intron | 40.0% | |
| TTGAGATGCTAAATGAGGCT+TGG | + | chr3.3:73677156-73677175 | MS.gene73787:CDS | 40.0% | |
| ! | CGCAAGTTTATTGTTTCTCC+TGG | + | chr3.3:73674742-73674761 | MS.gene73787:CDS | 40.0% |
| ! | CTATTCTTTTGAACTCAGGG+TGG | + | chr3.3:73676717-73676736 | MS.gene73787:intron | 40.0% |
| ! | GCTATTGTACTCGGTTTGTT+AGG | + | chr3.3:73675303-73675322 | MS.gene73787:intron | 40.0% |
| ! | TTGACGACTCTTTTTCCTTC+AGG | - | chr3.3:73676944-73676963 | None:intergenic | 40.0% |
| !! | GTGGTGAACCTAGTTCTATA+TGG | + | chr3.3:73676736-73676755 | MS.gene73787:CDS | 40.0% |
| AGCATTTGTGGTGGTTCGTA+GGG | - | chr3.3:73675026-73675045 | None:intergenic | 45.0% | |
| ATACTCGGTAGCATTTGTGG+TGG | - | chr3.3:73675035-73675054 | None:intergenic | 45.0% | |
| ATATCTTGGGCACTCCATAC+GGG | - | chr3.3:73675365-73675384 | None:intergenic | 45.0% | |
| ATCCTTTCAAGCTCGGAATC+TGG | + | chr3.3:73674499-73674518 | MS.gene73787:CDS | 45.0% | |
| CAATGATCAAGGAAGACAGG+GGG | - | chr3.3:73675890-73675909 | None:intergenic | 45.0% | |
| CGAAGAATGAAACGAGCAAC+GGG | - | chr3.3:73674700-73674719 | None:intergenic | 45.0% | |
| CGACTCAATCACTTTGTGCT+GGG | - | chr3.3:73676251-73676270 | None:intergenic | 45.0% | |
| GATATCTTGGGCACTCCATA+CGG | - | chr3.3:73675366-73675385 | None:intergenic | 45.0% | |
| GCAATGATCAAGGAAGACAG+GGG | - | chr3.3:73675891-73675910 | None:intergenic | 45.0% | |
| GGACACAAGATGACTTTGTC+TGG | + | chr3.3:73676078-73676097 | MS.gene73787:CDS | 45.0% | |
| GGATTCCCTCTAACAGAATC+GGG | - | chr3.3:73675344-73675363 | None:intergenic | 45.0% | |
| GGGATTCCCTCTAACAGAAT+CGG | - | chr3.3:73675345-73675364 | None:intergenic | 45.0% | |
| GTGAGCTCTCAATGTACCAT+CGG | - | chr3.3:73676868-73676887 | None:intergenic | 45.0% | |
| GTTCTCTTGACCCTAACTTG+AGG | - | chr3.3:73675183-73675202 | None:intergenic | 45.0% | |
| TAGCATTTGTGGTGGTTCGT+AGG | - | chr3.3:73675027-73675046 | None:intergenic | 45.0% | |
| TCCATATGGATCAGCCATGT+GGG | + | chr3.3:73675125-73675144 | MS.gene73787:intron | 45.0% | |
| TGGTACATTGAGAGCTCACA+AGG | + | chr3.3:73676869-73676888 | MS.gene73787:CDS | 45.0% | |
| TGTCACCCGATTCTGTTAGA+GGG | + | chr3.3:73675336-73675355 | MS.gene73787:intron | 45.0% | |
| TTCCAGATTCCGAGCTTGAA+AGG | - | chr3.3:73674504-73674523 | None:intergenic | 45.0% | |
| ! | AGTCGATCCGTCTAAGACAT+TGG | - | chr3.3:73675819-73675838 | None:intergenic | 45.0% |
| ! | GCAGTGCAGTGTTTCTGTTA+TGG | + | chr3.3:73675102-73675121 | MS.gene73787:intron | 45.0% |
| !! | GCTTTGAAACACAGGAGAAC+TGG | - | chr3.3:73676907-73676926 | None:intergenic | 45.0% |
| !!! | ACCTTTTTCAGCACGCAGAT+AGG | + | chr3.3:73677270-73677289 | MS.gene73787:CDS | 45.0% |
| !!! | CCTTTTTCAGCACGCAGATA+GGG | + | chr3.3:73677271-73677290 | MS.gene73787:CDS | 45.0% |
| AGAATGAAACGAGCAACGGG+TGG | - | chr3.3:73674697-73674716 | None:intergenic | 50.0% | |
| ATTTGTGGTGGTTCGTAGGG+CGG | - | chr3.3:73675023-73675042 | None:intergenic | 50.0% | |
| CATCGGCAGTGACAATGGTT+AGG | - | chr3.3:73676851-73676870 | None:intergenic | 50.0% | |
| CCCTATCTGCGTGCTGAAAA+AGG | - | chr3.3:73677274-73677293 | None:intergenic | 50.0% | |
| CGCAGATAGGGAGCTAGTTA+TGG | + | chr3.3:73677283-73677302 | MS.gene73787:CDS | 50.0% | |
| CTAACCATTGTCACTGCCGA+TGG | + | chr3.3:73676849-73676868 | MS.gene73787:CDS | 50.0% | |
| CTCTAACAGAATCGGGTGAC+AGG | - | chr3.3:73675337-73675356 | None:intergenic | 50.0% | |
| CTGTCACCCGATTCTGTTAG+AGG | + | chr3.3:73675335-73675354 | MS.gene73787:intron | 50.0% | |
| CTGTTAGAGGGAATCCCGTA+TGG | + | chr3.3:73675348-73675367 | MS.gene73787:intron | 50.0% | |
| GAATGAAACGAGCAACGGGT+GGG | - | chr3.3:73674696-73674715 | None:intergenic | 50.0% | |
| GCGACTCAATCACTTTGTGC+TGG | - | chr3.3:73676252-73676271 | None:intergenic | 50.0% | |
| GTAACTTCGAAGAGCAGTGC+AGG | - | chr3.3:73676997-73677016 | None:intergenic | 50.0% | |
| GTATAGCCTCATCGAGCATG+CGG | - | chr3.3:73676821-73676840 | None:intergenic | 50.0% | |
| GTCCATATGGATCAGCCATG+TGG | + | chr3.3:73675124-73675143 | MS.gene73787:intron | 50.0% | |
| TATAGCCTCATCGAGCATGC+GGG | - | chr3.3:73676820-73676839 | None:intergenic | 50.0% | |
| TGTACCATCGGCAGTGACAA+TGG | - | chr3.3:73676856-73676875 | None:intergenic | 50.0% | |
| ! | TCAAGCTCGGAATCTGGAAC+TGG | + | chr3.3:73674505-73674524 | MS.gene73787:CDS | 50.0% |
| ATGTGCAGCCTAGGAGCAAG+CGG | + | chr3.3:73675231-73675250 | MS.gene73787:intron | 55.0% | |
| ATTCTTCGTGTCTCCGTCGC+TGG | + | chr3.3:73674712-73674731 | MS.gene73787:CDS | 55.0% | |
| CTGACACTGAACCTCTGCAC+TGG | + | chr3.3:73676665-73676684 | MS.gene73787:intron | 55.0% | |
| GCCCACATGGCTGATCCATA+TGG | - | chr3.3:73675129-73675148 | None:intergenic | 55.0% | |
| ! | GGATCAGCCATGTGGGCTAT+AGG | + | chr3.3:73675132-73675151 | MS.gene73787:intron | 55.0% |
| CGGACATACCGCTTGCTCCT+AGG | - | chr3.3:73675242-73675261 | None:intergenic | 60.0% | |
| CTTGCGGGAAGAACCAGCGA+CGG | - | chr3.3:73674728-73674747 | None:intergenic | 60.0% | |
| CCTCATCGAGCATGCGGGAG+AGG | - | chr3.3:73676815-73676834 | None:intergenic | 65.0% | |
| CCTCTCCCGCATGCTCGATG+AGG | + | chr3.3:73676812-73676831 | MS.gene73787:CDS | 65.0% | |
| CGAGCATGCGGGAGAGGCAA+TGG | - | chr3.3:73676809-73676828 | None:intergenic | 65.0% | |
| GGTTCGTAGGGCGGCGTGAA+AGG | - | chr3.3:73675014-73675033 | None:intergenic | 65.0% | |
| !! | CAAGGAAGACAGGGGGCACC+AGG | - | chr3.3:73675883-73675902 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 73674417 | 73677346 | 73674417 | ID=MS.gene73787 |
| chr3.3 | mRNA | 73674417 | 73677346 | 73674417 | ID=MS.gene73787.t1;Parent=MS.gene73787 |
| chr3.3 | exon | 73674417 | 73674526 | 73674417 | ID=MS.gene73787.t1.exon1;Parent=MS.gene73787.t1 |
| chr3.3 | CDS | 73674417 | 73674526 | 73674417 | ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1 |
| chr3.3 | exon | 73674618 | 73674763 | 73674618 | ID=MS.gene73787.t1.exon2;Parent=MS.gene73787.t1 |
| chr3.3 | CDS | 73674618 | 73674763 | 73674618 | ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1 |
| chr3.3 | exon | 73676060 | 73676175 | 73676060 | ID=MS.gene73787.t1.exon3;Parent=MS.gene73787.t1 |
| chr3.3 | CDS | 73676060 | 73676175 | 73676060 | ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1 |
| chr3.3 | exon | 73676735 | 73677346 | 73676735 | ID=MS.gene73787.t1.exon4;Parent=MS.gene73787.t1 |
| chr3.3 | CDS | 73676735 | 73677346 | 73676735 | ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1 |
| Gene Sequence |
| Protein sequence |
