AlfalfaGEDB | MS.gene73787

M. sativa cultivar XinJiangDaYe / MS.gene73787

KEGG: K10523
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73787.t1	XP_003602063.1	98.5	327	5	0	1	327	1	327	7.60E-187	662.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73787.t1	Q9XHZ8	68.1	323	101	2	4	326	5	325	2.4e-125	449.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73787.t1	G7J501	98.5	327	5	0	1	327	1	327	5.5e-187	662.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene73787.t1	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73787.t1	MTR_3g088560	98.471	327	5	0	1	327	1	327	0.0	674
MS.gene73787.t1	MTR_3g088560	97.951	244	5	0	84	327	14	257	3.29e-180	498
MS.gene73787.t1	MTR_3g088560	98.347	242	4	0	86	327	31	272	4.47e-179	496
MS.gene73787.t1	MTR_1g029850	73.171	328	81	4	1	323	1	326	4.23e-175	488
MS.gene73787.t1	MTR_3g088560	98.537	205	3	0	123	327	1	205	1.78e-150	421
MS.gene73787.t1	MTR_3g061090	51.250	320	152	4	4	321	7	324	1.25e-115	337
MS.gene73787.t1	MTR_5g096700	46.273	322	168	4	2	321	7	325	1.11e-96	289
MS.gene73787.t1	MTR_3g061090	50.598	251	121	3	72	321	4	252	1.96e-81	248
MS.gene73787.t1	MTR_5g096700	45.896	268	140	4	56	321	2	266	8.05e-74	229
MS.gene73787.t1	MTR_5g096790	36.747	332	178	11	5	321	8	322	7.80e-56	184

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73787.t1	AT1G21780	67.890	327	102	3	1	326	1	325	1.36e-163	459
MS.gene73787.t1	AT1G21780	67.890	327	102	3	1	326	1	325	1.36e-163	459
MS.gene73787.t1	AT1G55760	48.297	323	162	4	2	322	5	324	8.93e-111	325
MS.gene73787.t1	AT2G39760	33.108	148	88	1	151	287	184	331	2.01e-14	73.6
MS.gene73787.t1	AT2G39760	33.108	148	88	1	151	287	184	331	2.08e-14	73.6
MS.gene73787.t1	AT2G39760	33.108	148	88	1	151	287	184	331	2.08e-14	73.6
MS.gene73787.t1	AT2G39760	33.108	148	88	1	151	287	184	331	3.81e-14	73.2
MS.gene73787.t1	AT5G13060	26.415	159	112	3	132	289	541	695	3.06e-11	64.7
MS.gene73787.t1	AT3G56230	27.219	169	117	4	157	321	107	273	8.63e-11	62.4

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Find 64 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTGTCTTGCATTGCT+TGG	0.456346	3.3:+73677050	MS.gene73787:CDS
AAATCTGATCCTTTCAAGCT+CGG	0.501085	3.3:+73674492	MS.gene73787:CDS
ACAATTAACTAAACTATTCT+GGG	0.384725	3.3:-73677337	None:intergenic
ACGAAGAATGAAACGAGCAA+CGG	0.645922	3.3:-73674698	None:intergenic
AGAACCTTCTAAAGTTTCTA+AGG	0.261667	3.3:+73674666	MS.gene73787:CDS
AGAATGAAACGAGCAACGGG+TGG	0.627136	3.3:-73674694	None:intergenic
AGGAGAAACAATAAACTTGC+GGG	0.481416	3.3:-73674740	None:intergenic
AGTGTCAACCCTATCCGCCA+TGG	0.645297	3.3:-73674415	None:intergenic
AGTTCTATATGGTCATCTGA+TGG	0.568409	3.3:+73676747	MS.gene73787:CDS
ATCCTTTCAAGCTCGGAATC+TGG	0.336252	3.3:+73674499	MS.gene73787:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACGGTAAAGTTTGTGTA+TGG	+	chr3.3:73674850-73674869	MS.gene73787:intron	30.0%
AAATGAAAGAAAAGGGTTGT+TGG	+	chr3.3:73676417-73676436	MS.gene73787:intron	30.0%
AAGATCGCTAAAAAGTTACA+CGG	-	chr3.3:73676274-73676293	None:intergenic	30.0%
AATACCAATATTGATGTAGG+TGG	+	chr3.3:73676208-73676227	MS.gene73787:intron	30.0%
AATATTGTCAATTGGAATCG+TGG	+	chr3.3:73676465-73676484	MS.gene73787:intron	30.0%
AATTATAGCAATTATTCCGG+AGG	+	chr3.3:73676586-73676605	MS.gene73787:intron	30.0%
ACATAAAGATGCAATGATCA+AGG	-	chr3.3:73675901-73675920	None:intergenic	30.0%
ATATAATGAAATGCTGATCC+AGG	+	chr3.3:73676013-73676032	MS.gene73787:intron	30.0%
ATATTGTCAATTGGAATCGT+GGG	+	chr3.3:73676466-73676485	MS.gene73787:intron	30.0%
ATCTTACTAGCTATTGTACT+CGG	+	chr3.3:73675294-73675313	MS.gene73787:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	73674417	73677346	73674417	ID=MS.gene73787
chr3.3	mRNA	73674417	73677346	73674417	ID=MS.gene73787.t1;Parent=MS.gene73787
chr3.3	exon	73674417	73674526	73674417	ID=MS.gene73787.t1.exon1;Parent=MS.gene73787.t1
chr3.3	CDS	73674417	73674526	73674417	ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1
chr3.3	exon	73674618	73674763	73674618	ID=MS.gene73787.t1.exon2;Parent=MS.gene73787.t1
chr3.3	CDS	73674618	73674763	73674618	ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1
chr3.3	exon	73676060	73676175	73676060	ID=MS.gene73787.t1.exon3;Parent=MS.gene73787.t1
chr3.3	CDS	73676060	73676175	73676060	ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1
chr3.3	exon	73676735	73677346	73676735	ID=MS.gene73787.t1.exon4;Parent=MS.gene73787.t1
chr3.3	CDS	73676735	73677346	73676735	ID=cds.MS.gene73787.t1;Parent=MS.gene73787.t1

Gene Sequence

>MS.gene73787

ATGGCGGATAGGGTTGACACTGTTGCAAGATTAGCACAATGGAAAATCGAAAACTTCGGTCCTTGTTCTTACAAAAAATCTGATCCTTTCAAGCTCGGAATCTGGAACTGGTATACGCAGTATCAATTCATTTATTTCATTTTTCTCTATCTCTCTGTATTTGAATCAAACTTGAAATTTTCAATTCGTTTTTTTTTTCAGGTACTTTTCAATAGTAAGGAATAGGTTTTTCTCCATTCATCTTTTTCCAGAACCTTCTAAAGTTTCTAAGGAGCACCCACCCGTTGCTCGTTTCATTCTTCGTGTCTCCGTCGCTGGTTCTTCCCGCAAGTTTATTGTTTCTCCTGGTAAAGTAAATATGCACCAACACTTTTTCGTTTTTTGTTTTTGTTGCTGATTTCATTACATGACATTTTATTTGTATTAATGTGATAAAACGGTAAAGTTTGTGTATGGTAATTTTTTTTCATATAGATGGTTTCCAGAATTATGAATTTCTAACTCTGCATTTTCATACACATTTAATGGAATTGTAATATTCTATTGAAATGATTTAAGTGATTTACAAAGTAGTAACTAATTACTACTAGAACGCCTTTCACGCCGCCCTACGAACCACCACAAATGCTACCGAGTATTGTTGAAGATGATCGGTTTCACTCCGTTTCGCATTCGTTGAATAATTGCAGTGCAGTGTTTCTGTTATGGTCCATATGGATCAGCCATGTGGGCTATAGGAAAATAACACATGGAAGAGTCAACTCCTCAAGTTAGGGTCAAGAGAACACTACAAGACTCAAACACCTTAAGGATTATGTGCAGCCTAGGAGCAAGCGGTATGTCCGCAAGAATTGAGAATATCTAGAAGGTTGTAGATATCTTACTAGCTATTGTACTCGGTTTGTTAGGGTGAGTCACCTGTCACCCGATTCTGTTAGAGGGAATCCCGTATGGAGTGCCCAAGATATCAAATAGTACTGTTGAGTGTTGAGATTATGCTATATATGTACACTCATGATGATGAATAAAGCAAGCAGAATTAATCAGAAGTATAGCACTAGTATAGTATAGTTGTACTGCAATTTTATGCTACTATCTTTACTTGCTTACTTGATTTGAAATTAGGGTAAAAACGTAAAAACATACGAATTTACAGTAAATTATCGAATTTATCCAAATTAGAATGGTTTCAAAACCGAATTTACCAGATTTCGAATATACAAGTGAATTGATTCGTTTTTTTTTTCCATCTAACGTAAATTTGTATGTTTTTACGTATTAATACGTGTATTTGATAACCTTGATTAGGTCTCTAATAGAAATTGACTCGGCAGATAATCTAGATCAGATAGCTGATATTTTGAGTTCCCTAATTACTAAAGTGTCGTTTGATCTCTATCCAATGTCTTAGACGGATCGACTATAGTGATCTTAGGAAATTCCGCTTGAAATGGTATTCTATGCCTGGTGCCCCCTGTCTTCCTTGATCATTGCATCTTTATGTGCTATGAGGAAATACGGATAATTTCATATTGCATCCTCAATTTGGCAAATGAGGAATTTGCCATTGCAATTATCTATGGCAGTTTTAAGAGTATATAATGAAATGCTGATCCAGGTCATTTTTGTTTGCTTGTATGCAGTTTATGAAAGGCTGCTTAGGACACAAGATGACTTTGTCTGGTCTATTGATACTGCTTTCGTGGGCCGCTTCATCATTGATGTTGAATTTCTTGACCTAAAGATATGCCATATGAATGTGAGTTTCTAATACCTATACTTGTTTTCTCAAATACCAATATTGATGTAGGTGGCTTAATACACAAAATAACCCAGCACAAAGTGATTGAGTCGCCGTGTAACTTTTTAGCGATCTTAGCTGTTTGATTACCAATACACAGGACTTGCATGTTATGTATCTGCTAATTGATGTGCCACAAAATTTACTGGATTATCTTGTGTATTGTGGATTGTGTGTTTTGCATGCATTATAACTGGAAAAATGAAAGAAAAGGGTTGTTGGTATTTTTTTTGTGTGCTGTGTGCAAAATATTGTCAATTGGAATCGTGGGTAGCAAAAATTTACAGTTTTGTGCTATCCCGTGAACTTCCTATTATCCACTACTTAGACTATTTTAAATATCAAATGAAGTACCTTTTTTATATCAAAATTATAGCAATTATTCCGGAGGATGATCTCTTGAATAGCTGCAAATGTAGTCGATTTGACTCTTCCCTGTATACAGAACTGACACTGAACCTCTGCACTGGTATCATATTTTTTCTGCTTATGCATTGATCTATTCTTTTGAACTCAGGGTGGTGAACCTAGTTCTATATGGTCATCTGATGGAACTTCGCAATGCAATGAAGCTCAAAGAAGTACTCTCCATTGCCTCTCCCGCATGCTCGATGAGGCTATACATGCTGACCTAACCATTGTCACTGCCGATGGTACATTGAGAGCTCACAAGGCAATTTTGTCTGCCAGTTCTCCTGTGTTTCAAAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCGTCAACAATCCATATTGAAGACATGTCACTTGAATCCTGCACTGCTCTTCGAAGTTACTTGTATGGAGCAATTAAACAAGTAGATTTCAGGAAACACTGTCTTGCATTGCTTGGAGCAGCTAATAAGTATGATATTGGTGGTCTGAAAGATTTATGTGAGGAAAACCTTCTTGAAGATATTAACTCCGACAATGTTCTTGAGATGCTAAATGAGGCTTGGCTTTATCAGTTACACAAGTTAAAGAAAGGATGTTTAACATTCTTATTTGAATTTGGTAAAATATATGATGTTAAAACTGATGAAATAAATAACCTTTTTCAGCACGCAGATAGGGAGCTAGTTATGGAGATGTTTCATGTGATGCTTACAATTTCCAACCCAGAATAG

Protein sequence

>MS.gene73787.t1

MADRVDTVARLAQWKIENFGPCSYKKSDPFKLGIWNWYFSIVRNRFFSIHLFPEPSKVSKEHPPVARFILRVSVAGSSRKFIVSPVYERLLRTQDDFVWSIDTAFVGRFIIDVEFLDLKICHMNGGEPSSIWSSDGTSQCNEAQRSTLHCLSRMLDEAIHADLTIVTADGTLRAHKAILSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALRSYLYGAIKQVDFRKHCLALLGAANKYDIGGLKDLCEENLLEDINSDNVLEMLNEAWLYQLHKLKKGCLTFLFEFGKIYDVKTDEINNLFQHADRELVMEMFHVMLTISNPE