AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73807

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73807.t1 MTR_4g079960 93.103 319 13 2 1 316 1 313 0.0 538
MS.gene73807.t1 MTR_4g079960 92.857 308 13 2 1 305 1 302 0.0 510
MS.gene73807.t1 MTR_4g079960 91.935 310 16 2 1 307 1 304 0.0 509
MS.gene73807.t1 MTR_2g016140 51.768 311 121 6 19 306 11 315 4.48e-88 267
MS.gene73807.t1 MTR_2g016140 52.090 311 119 7 19 306 11 314 5.08e-87 264
MS.gene73807.t1 MTR_8g022290 38.567 293 144 7 27 300 64 339 6.39e-45 157
MS.gene73807.t1 MTR_2g092960 33.924 395 159 11 8 308 23 409 1.74e-39 148
MS.gene73807.t1 MTR_2g102227 30.345 290 144 7 14 296 255 493 2.97e-26 108
MS.gene73807.t1 MTR_1g061600 37.255 102 57 3 31 131 133 228 2.31e-16 79.7
MS.gene73807.t1 MTR_6g486270 38.947 95 52 2 31 124 130 219 2.94e-16 79.0
MS.gene73807.t1 MTR_3g014280 25.524 286 177 9 26 294 33 299 1.12e-14 73.9
MS.gene73807.t1 MTR_4g117990 35.922 103 63 2 30 131 43 143 5.65e-14 72.0
MS.gene73807.t1 MTR_1g037650 33.333 102 60 2 26 127 33 126 5.17e-12 64.3
MS.gene73807.t1 MTR_7g081190 41.429 70 40 1 30 99 45 113 5.10e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73807.t1 AT3G58630 47.239 326 123 9 1 302 1 301 9.22e-74 229
MS.gene73807.t1 AT3G58630 47.239 326 123 9 1 302 1 301 1.29e-73 229
MS.gene73807.t1 AT3G11100 40.956 293 119 7 13 305 9 247 6.61e-50 166
MS.gene73807.t1 AT5G05550 40.569 281 113 6 27 307 20 246 1.20e-49 166
MS.gene73807.t1 AT5G05550 40.502 279 112 6 27 305 20 244 5.42e-49 164
MS.gene73807.t1 AT5G05550 40.433 277 111 6 27 303 20 242 5.60e-48 161
MS.gene73807.t1 AT3G14180 59.615 104 38 2 27 130 80 179 2.74e-34 130
MS.gene73807.t1 AT1G54060 51.485 101 44 2 27 127 90 185 7.38e-22 95.1
MS.gene73807.t1 AT3G24490 27.372 274 147 6 31 304 90 311 1.17e-21 94.0
MS.gene73807.t1 AT3G10030 39.669 121 66 3 16 134 144 259 1.62e-20 92.4
MS.gene73807.t1 AT3G10030 39.669 121 66 3 16 134 144 259 1.79e-20 92.0
MS.gene73807.t1 AT3G54390 28.082 292 170 9 19 302 23 282 1.03e-16 79.3
MS.gene73807.t1 AT3G54390 28.082 292 170 9 19 302 39 298 1.03e-16 79.7
MS.gene73807.t1 AT2G44730 34.737 95 59 2 30 123 63 155 7.37e-12 65.9

Find 104 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGAAACCAAACTCCTTA+TGG 0.211114 4.4:-31342167 None:intergenic
GGCTGCTGCGGCGGCGGCTG+AGG 0.328447 4.4:+31342086 MS.gene73807:CDS
ACAGAGACAAATGGTGGAAT+TGG 0.329589 4.4:+31342248 MS.gene73807:CDS
GATGCAGTTTGTGAAGGATT+TGG 0.330097 4.4:+31342281 MS.gene73807:CDS
CTTCCACCCTCATCGACGCC+TGG 0.342555 4.4:+31341581 MS.gene73807:CDS
ACGTCGCGCTTTCTTGTTAC+CGG 0.348904 4.4:-31341692 None:intergenic
GACGAAGGTTACCGCGGTTA+AGG 0.349488 4.4:-31341621 None:intergenic
TCCCCGTCCGCGAAGACTGC+TGG 0.376207 4.4:+31341545 MS.gene73807:CDS
GGTGGAGACGGTGGAGATTG+AGG 0.380464 4.4:-31341925 None:intergenic
CGCGGCGGCTGCTGCGGCGG+CGG 0.380481 4.4:+31342080 MS.gene73807:CDS
GATGGGACCCATAAGGAGTT+TGG 0.382677 4.4:+31342159 MS.gene73807:CDS
TCTGAAACCAAACTCCTTAT+GGG 0.394233 4.4:-31342166 None:intergenic
GTAACCTTCGTCAGAAAACT+TGG 0.396096 4.4:+31341632 MS.gene73807:CDS
AATGATCATAAATTTGAAAC+AGG 0.398889 4.4:-31342395 None:intergenic
CTGGTAACCGCCGTCGGATT+CGG 0.403172 4.4:-31341785 None:intergenic
ATCGTTCCGGCGGAATTTCT+CGG 0.404517 4.4:+31342053 MS.gene73807:CDS
GAGGGTGGAAGTTGCGTCTT+CGG 0.412190 4.4:-31341569 None:intergenic
TCTTCTTTAACGTGTCGATT+CGG 0.420026 4.4:-31341735 None:intergenic
AGTACAAGATCGAGAAAGCT+AGG 0.431421 4.4:+31341758 MS.gene73807:CDS
TTCCACCCTCATCGACGCCT+GGG 0.432995 4.4:+31341582 MS.gene73807:CDS
AAACGCACTAAACGTGCTTC+TGG 0.443118 4.4:+31342357 MS.gene73807:CDS
GTGTGGAGTCAGAGGAATGG+AGG 0.449241 4.4:+31342115 MS.gene73807:CDS
GTCCAGCAGTCTTCGCGGAC+GGG 0.450561 4.4:-31341547 None:intergenic
ACTAAACGTGCTTCTGGTTC+CGG 0.451057 4.4:+31342363 MS.gene73807:CDS
GGCGGCGTGGACGTCGTTGA+CGG 0.453788 4.4:-31341671 None:intergenic
CATCCGGTCGGTCCCCGATC+CGG 0.459199 4.4:+31341991 MS.gene73807:CDS
AAAGAGACGAAGCATCGTTC+CGG 0.461522 4.4:+31342040 MS.gene73807:CDS
TGTGGAGTCAGAGGAATGGA+GGG 0.481728 4.4:+31342116 MS.gene73807:CDS
GACGGTGGAGATTGAGGAGG+TGG 0.483700 4.4:-31341919 None:intergenic
GTTCGCGGCGGCTGCTGCGG+CGG 0.489343 4.4:+31342077 MS.gene73807:CDS
GGCGTTCGCGGCGGCTGCTG+CGG 0.494203 4.4:+31342074 MS.gene73807:CDS
ACCGTCTCCACCGTCGCCTC+CGG 0.494561 4.4:+31341954 MS.gene73807:CDS
TCCAGCAGTCTTCGCGGACG+GGG 0.495685 4.4:-31341546 None:intergenic
TGGAGTCAGAGGAATGGAGG+GGG 0.503575 4.4:+31342118 MS.gene73807:CDS
ACTCGTCTTGACGTTCTCAT+CGG 0.505614 4.4:+31341826 MS.gene73807:CDS
CAGTCTTCGCGGACGGGGAA+CGG 0.508470 4.4:-31341541 None:intergenic
GCGGAATTTCTCGGCGTTCG+CGG 0.513561 4.4:+31342062 MS.gene73807:CDS
GTTGATAGGTGACGGAGCTC+CGG 0.518538 4.4:-31341488 None:intergenic
CGCGGCGGAACGGAGTTGAT+AGG 0.521754 4.4:-31341502 None:intergenic
TCTCCCCGCCGGTGAATGTA+CGG 0.525928 4.4:+31341872 MS.gene73807:CDS
AGAAAACGATGGGACCCATA+AGG 0.527107 4.4:+31342152 MS.gene73807:CDS
GGTCCAGCAGTCTTCGCGGA+CGG 0.531762 4.4:-31341548 None:intergenic
GACGGTGGAGACGGTGGAGA+AGG 0.533943 4.4:-31341946 None:intergenic
GCCGGAGGCGACGGTGGAGA+CGG 0.537471 4.4:-31341955 None:intergenic
GGAGTAGACCGTACATTCAC+CGG 0.542070 4.4:-31341880 None:intergenic
TCAGAGAATGCAGTTATACA+TGG 0.544592 4.4:+31342308 MS.gene73807:CDS
GGCAGAAAGTGTGGAGTCAG+AGG 0.545717 4.4:+31342107 MS.gene73807:CDS
GTTCCGGATCGGGGACCGAC+CGG 0.547076 4.4:-31341994 None:intergenic
ATTATCCACGCCGGAGGCGA+CGG 0.547703 4.4:-31341964 None:intergenic
GTGGACGTCGTTGACGGCGT+CGG 0.549602 4.4:-31341665 None:intergenic
TTGAAACAGGTTAAGCTCAC+CGG 0.549616 4.4:-31342382 None:intergenic
GCAGAGGATGCAGTTTGTGA+AGG 0.549708 4.4:+31342275 MS.gene73807:CDS
GGCGATGACGACGGAAGACG+CGG 0.549924 4.4:-31341520 None:intergenic
CTTCGGTCCAGCAGTCTTCG+CGG 0.552125 4.4:-31341552 None:intergenic
GTCGAGGTAGCGTTCACCCC+AGG 0.553968 4.4:-31341599 None:intergenic
ACGGCGGTTACCAGAGTCCC+TGG 0.554940 4.4:+31341794 MS.gene73807:CDS
GGTGGAGACGGTGGAGAAGG+TGG 0.555662 4.4:-31341943 None:intergenic
TGGTTTCAGAGAGCTCGCTC+AGG 0.555951 4.4:+31342179 MS.gene73807:CDS
AAAGTGTGGAGTCAGAGGAA+TGG 0.557513 4.4:+31342112 MS.gene73807:CDS
AGCTTCAAAACAGAGACAAA+TGG 0.558007 4.4:+31342239 MS.gene73807:CDS
CGACGGAAGACGCGGCGGAA+CGG 0.559377 4.4:-31341512 None:intergenic
GTCAACGACGTCCACGCCGC+CGG 0.559754 4.4:+31341673 MS.gene73807:CDS
GACGGTGGAGAAGGTGGAGA+CGG 0.562074 4.4:-31341937 None:intergenic
GGCGTGGATAATCTCTCATC+CGG 0.563671 4.4:+31341975 MS.gene73807:CDS
TTCACCCCAGGCGTCGATGA+GGG 0.566151 4.4:-31341587 None:intergenic
GGTGGACGTTTGACGACGGT+TGG 0.571165 4.4:-31341901 None:intergenic
GGTTACCGCGGTTAAGGTCG+AGG 0.573221 4.4:-31341615 None:intergenic
ACCCCAGGCGTCGATGAGGG+TGG 0.576167 4.4:-31341584 None:intergenic
CTCCACCGTCGCCTCCGGCG+TGG 0.577896 4.4:+31341959 MS.gene73807:CDS
GTACAAGATCGAGAAAGCTA+GGG 0.590074 4.4:+31341759 MS.gene73807:CDS
ACGGGGAACGGCGATGACGA+CGG 0.590204 4.4:-31341529 None:intergenic
GAGACGAAGCATCGTTCCGG+CGG 0.597085 4.4:+31342043 MS.gene73807:CDS
TGGATAATCTCTCATCCGGT+CGG 0.599124 4.4:+31341979 MS.gene73807:CDS
CGTTTCATGGACATCATCGC+CGG 0.603278 4.4:+31341469 None:intergenic
ATCCACGCCGGAGGCGACGG+TGG 0.604964 4.4:-31341961 None:intergenic
AGAAAGGAAGAGAAAACGAT+GGG 0.606592 4.4:+31342142 MS.gene73807:CDS
CTTTCTTGTTACCGGCGGCG+TGG 0.607096 4.4:-31341684 None:intergenic
TCGTCAGAAAACTTGGCAAG+AGG 0.608905 4.4:+31341639 MS.gene73807:CDS
GTGGAGTCAGAGGAATGGAG+GGG 0.611126 4.4:+31342117 MS.gene73807:CDS
TAGACCGTACATTCACCGGC+GGG 0.615042 4.4:-31341876 None:intergenic
GTTCACCCCAGGCGTCGATG+AGG 0.617071 4.4:-31341588 None:intergenic
GGAGGCGACGGTGGAGACGG+TGG 0.619172 4.4:-31341952 None:intergenic
TGGTGGAATTGGAGAAGCAG+AGG 0.620275 4.4:+31342259 MS.gene73807:CDS
GGCGGCTGAGGCAGAAAGTG+TGG 0.620535 4.4:+31342098 MS.gene73807:CDS
TCCACCCTCATCGACGCCTG+GGG 0.621538 4.4:+31341583 MS.gene73807:CDS
GGAACGGAGTTGATAGGTGA+CGG 0.622230 4.4:-31341496 None:intergenic
GGGACTCTGGTAACCGCCGT+CGG 0.624801 4.4:-31341791 None:intergenic
GAATTTCTCGGCGTTCGCGG+CGG 0.637732 4.4:+31342065 MS.gene73807:CDS
GGTGGAGAAGGTGGAGACGG+TGG 0.638582 4.4:-31341934 None:intergenic
AAGAAAGGAAGAGAAAACGA+TGG 0.648071 4.4:+31342141 MS.gene73807:CDS
AGGAGGTGGACGTTTGACGA+CGG 0.650309 4.4:-31341905 None:intergenic
GGAGACGGTGGAGATTGAGG+AGG 0.652907 4.4:-31341922 None:intergenic
CGAACGCCGAGAAATTCCGC+CGG 0.653177 4.4:-31342059 None:intergenic
GCAGTTATACATGGAAACGC+AGG 0.653381 4.4:+31342317 MS.gene73807:CDS
TGAGAGATTATCCACGCCGG+AGG 0.660526 4.4:-31341970 None:intergenic
TTCAAAACAGAGACAAATGG+TGG 0.662111 4.4:+31342242 MS.gene73807:CDS
GCTAGGGTTTCCGAATCCGA+CGG 0.665069 4.4:+31341775 MS.gene73807:CDS
TCGCGCTTTCTTGTTACCGG+CGG 0.665856 4.4:-31341689 None:intergenic
AGGGTTTCCGAATCCGACGG+CGG 0.672515 4.4:+31341778 MS.gene73807:CDS
GATGACGACGGAAGACGCGG+CGG 0.700874 4.4:-31341517 None:intergenic
AGACCGTACATTCACCGGCG+GGG 0.706976 4.4:-31341875 None:intergenic
CGCTACCTCGACCTTAACCG+CGG 0.709531 4.4:+31341610 MS.gene73807:CDS
GTAGACCGTACATTCACCGG+CGG 0.721299 4.4:-31341877 None:intergenic
GGATGAGAGATTATCCACGC+CGG 0.738065 4.4:-31341973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATCATAAATTTGAAAC+AGG - chr4.4:31342398-31342417 None:intergenic 20.0%
AAGAAAGGAAGAGAAAACGA+TGG + chr4.4:31342141-31342160 MS.gene73807:CDS 35.0%
AGAAAGGAAGAGAAAACGAT+GGG + chr4.4:31342142-31342161 MS.gene73807:CDS 35.0%
AGCTTCAAAACAGAGACAAA+TGG + chr4.4:31342239-31342258 MS.gene73807:CDS 35.0%
TCAGAGAATGCAGTTATACA+TGG + chr4.4:31342308-31342327 MS.gene73807:CDS 35.0%
TTCAAAACAGAGACAAATGG+TGG + chr4.4:31342242-31342261 MS.gene73807:CDS 35.0%
! TCTGAAACCAAACTCCTTAT+GGG - chr4.4:31342169-31342188 None:intergenic 35.0%
!! TCTTCTTTAACGTGTCGATT+CGG - chr4.4:31341738-31341757 None:intergenic 35.0%
ACGTCAAGACGAGTGAAAAA+CGG - chr4.4:31341820-31341839 None:intergenic 40.0%
AGTACAAGATCGAGAAAGCT+AGG + chr4.4:31341758-31341777 MS.gene73807:CDS 40.0%
GATGCAGTTTGTGAAGGATT+TGG + chr4.4:31342281-31342300 MS.gene73807:CDS 40.0%
GTAACCTTCGTCAGAAAACT+TGG + chr4.4:31341632-31341651 MS.gene73807:CDS 40.0%
GTACAAGATCGAGAAAGCTA+GGG + chr4.4:31341759-31341778 MS.gene73807:CDS 40.0%
TTGAAACAGGTTAAGCTCAC+CGG - chr4.4:31342385-31342404 None:intergenic 40.0%
! ACAGAGACAAATGGTGGAAT+TGG + chr4.4:31342248-31342267 MS.gene73807:CDS 40.0%
!! CTCTGAAACCAAACTCCTTA+TGG - chr4.4:31342170-31342189 None:intergenic 40.0%
AAACGCACTAAACGTGCTTC+TGG + chr4.4:31342357-31342376 MS.gene73807:CDS 45.0%
AAAGTGTGGAGTCAGAGGAA+TGG + chr4.4:31342112-31342131 MS.gene73807:CDS 45.0%
AACACAAAAACGTCCGGCAA+TGG + chr4.4:31342014-31342033 MS.gene73807:CDS 45.0%
ACTCGTCTTGACGTTCTCAT+CGG + chr4.4:31341826-31341845 MS.gene73807:CDS 45.0%
AGAAAACGATGGGACCCATA+AGG + chr4.4:31342152-31342171 MS.gene73807:CDS 45.0%
ATCCGGAACACAAAAACGTC+CGG + chr4.4:31342008-31342027 MS.gene73807:CDS 45.0%
GCAGTTATACATGGAAACGC+AGG + chr4.4:31342317-31342336 MS.gene73807:CDS 45.0%
TCGTCAGAAAACTTGGCAAG+AGG + chr4.4:31341639-31341658 MS.gene73807:CDS 45.0%
TGGATAATCTCTCATCCGGT+CGG + chr4.4:31341979-31341998 MS.gene73807:CDS 45.0%
! ACGTTTTTGTGTTCCGGATC+GGG - chr4.4:31342007-31342026 None:intergenic 45.0%
! CTTGCCAAGTTTTCTGACGA+AGG - chr4.4:31341639-31341658 None:intergenic 45.0%
! GACGTTTTTGTGTTCCGGAT+CGG - chr4.4:31342008-31342027 None:intergenic 45.0%
! TCGGTTTTTGCACTGAACGT+CGG - chr4.4:31341719-31341738 None:intergenic 45.0%
! TCTCATCGGCGATACTTTTC+CGG + chr4.4:31341840-31341859 MS.gene73807:CDS 45.0%
! TTTTCTGACGAAGGTTACCG+CGG - chr4.4:31341630-31341649 None:intergenic 45.0%
!! AAAGAGACGAAGCATCGTTC+CGG + chr4.4:31342040-31342059 MS.gene73807:CDS 45.0%
!! ACTAAACGTGCTTCTGGTTC+CGG + chr4.4:31342363-31342382 MS.gene73807:CDS 45.0%
AAGACGAGTGAAAAACGGCC+AGG - chr4.4:31341815-31341834 None:intergenic 50.0%
ACGTCGCGCTTTCTTGTTAC+CGG - chr4.4:31341695-31341714 None:intergenic 50.0%
AGACGAGTGAAAAACGGCCA+GGG - chr4.4:31341814-31341833 None:intergenic 50.0%
ATCGTTCCGGCGGAATTTCT+CGG + chr4.4:31342053-31342072 MS.gene73807:CDS 50.0%
GATGGGACCCATAAGGAGTT+TGG + chr4.4:31342159-31342178 MS.gene73807:CDS 50.0%
GCAGAGGATGCAGTTTGTGA+AGG + chr4.4:31342275-31342294 MS.gene73807:CDS 50.0%
GGAGTAGACCGTACATTCAC+CGG - chr4.4:31341883-31341902 None:intergenic 50.0%
GGATGAGAGATTATCCACGC+CGG - chr4.4:31341976-31341995 None:intergenic 50.0%
GGCGTGGATAATCTCTCATC+CGG + chr4.4:31341975-31341994 MS.gene73807:CDS 50.0%
TGGTGGAATTGGAGAAGCAG+AGG + chr4.4:31342259-31342278 MS.gene73807:CDS 50.0%
TGTGGAGTCAGAGGAATGGA+GGG + chr4.4:31342116-31342135 MS.gene73807:CDS 50.0%
! CGTTTTTGTGTTCCGGATCG+GGG - chr4.4:31342006-31342025 None:intergenic 50.0%
! TCGTCTCTTTTCGCCATTGC+CGG - chr4.4:31342030-31342049 None:intergenic 50.0%
! TGCCGGACGTTTTTGTGTTC+CGG - chr4.4:31342013-31342032 None:intergenic 50.0%
!! GGAACGGAGTTGATAGGTGA+CGG - chr4.4:31341499-31341518 None:intergenic 50.0%
AGGAGGTGGACGTTTGACGA+CGG - chr4.4:31341908-31341927 None:intergenic 55.0%
GACGAAGGTTACCGCGGTTA+AGG - chr4.4:31341624-31341643 None:intergenic 55.0%
GAGGAATGGAGGGGGAAGAA+AGG + chr4.4:31342126-31342145 MS.gene73807:CDS 55.0%
GAGGGTGGAAGTTGCGTCTT+CGG - chr4.4:31341572-31341591 None:intergenic 55.0%
GCTAGGGTTTCCGAATCCGA+CGG + chr4.4:31341775-31341794 MS.gene73807:CDS 55.0%
GGTCAAAAAACTCTCCCCGC+CGG + chr4.4:31341861-31341880 MS.gene73807:CDS 55.0%
GTAGACCGTACATTCACCGG+CGG - chr4.4:31341880-31341899 None:intergenic 55.0%
GTGGAGTCAGAGGAATGGAG+GGG + chr4.4:31342117-31342136 MS.gene73807:CDS 55.0%
GTGTGGAGTCAGAGGAATGG+AGG + chr4.4:31342115-31342134 MS.gene73807:CDS 55.0%
TAGACCGTACATTCACCGGC+GGG - chr4.4:31341879-31341898 None:intergenic 55.0%
TCGCGCTTTCTTGTTACCGG+CGG - chr4.4:31341692-31341711 None:intergenic 55.0%
TGAAAAACGGCCAGGGACTC+TGG - chr4.4:31341807-31341826 None:intergenic 55.0%
TGAGAGATTATCCACGCCGG+AGG - chr4.4:31341973-31341992 None:intergenic 55.0%
TGGAGTCAGAGGAATGGAGG+GGG + chr4.4:31342118-31342137 MS.gene73807:CDS 55.0%
TGGTTTCAGAGAGCTCGCTC+AGG + chr4.4:31342179-31342198 MS.gene73807:CDS 55.0%
! GGCAGAAAGTGTGGAGTCAG+AGG + chr4.4:31342107-31342126 MS.gene73807:CDS 55.0%
!! GTTGATAGGTGACGGAGCTC+CGG - chr4.4:31341491-31341510 None:intergenic 55.0%
!!! GGCGGGGAGAGTTTTTTGAC+CGG - chr4.4:31341862-31341881 None:intergenic 55.0%
AGACCGTACATTCACCGGCG+GGG - chr4.4:31341878-31341897 None:intergenic 60.0%
AGGGTTTCCGAATCCGACGG+CGG + chr4.4:31341778-31341797 MS.gene73807:CDS 60.0%
ATTATCCACGCCGGAGGCGA+CGG - chr4.4:31341967-31341986 None:intergenic 60.0%
CGAACGCCGAGAAATTCCGC+CGG - chr4.4:31342062-31342081 None:intergenic 60.0%
CGCTACCTCGACCTTAACCG+CGG + chr4.4:31341610-31341629 MS.gene73807:CDS 60.0%
CTGGTAACCGCCGTCGGATT+CGG - chr4.4:31341788-31341807 None:intergenic 60.0%
CTTCGGTCCAGCAGTCTTCG+CGG - chr4.4:31341555-31341574 None:intergenic 60.0%
CTTTCTTGTTACCGGCGGCG+TGG - chr4.4:31341687-31341706 None:intergenic 60.0%
GAATTTCTCGGCGTTCGCGG+CGG + chr4.4:31342065-31342084 MS.gene73807:CDS 60.0%
GACGGTGGAGAAGGTGGAGA+CGG - chr4.4:31341940-31341959 None:intergenic 60.0%
GACGGTGGAGATTGAGGAGG+TGG - chr4.4:31341922-31341941 None:intergenic 60.0%
GCGGAATTTCTCGGCGTTCG+CGG + chr4.4:31342062-31342081 MS.gene73807:CDS 60.0%
GGAGACGGTGGAGATTGAGG+AGG - chr4.4:31341925-31341944 None:intergenic 60.0%
GGTGGACGTTTGACGACGGT+TGG - chr4.4:31341904-31341923 None:intergenic 60.0%
GGTGGAGACGGTGGAGATTG+AGG - chr4.4:31341928-31341947 None:intergenic 60.0%
GGTTACCGCGGTTAAGGTCG+AGG - chr4.4:31341618-31341637 None:intergenic 60.0%
TCTCCCCGCCGGTGAATGTA+CGG + chr4.4:31341872-31341891 MS.gene73807:CDS 60.0%
TTCCACCCTCATCGACGCCT+GGG + chr4.4:31341582-31341601 MS.gene73807:CDS 60.0%
!! GAGACGAAGCATCGTTCCGG+CGG + chr4.4:31342043-31342062 MS.gene73807:CDS 60.0%
!! TTCACCCCAGGCGTCGATGA+GGG - chr4.4:31341590-31341609 None:intergenic 60.0%
ACGGCGGTTACCAGAGTCCC+TGG + chr4.4:31341794-31341813 MS.gene73807:CDS 65.0%
ACGGGGAACGGCGATGACGA+CGG - chr4.4:31341532-31341551 None:intergenic 65.0%
CAGTCTTCGCGGACGGGGAA+CGG - chr4.4:31341544-31341563 None:intergenic 65.0%
CTTCCACCCTCATCGACGCC+TGG + chr4.4:31341581-31341600 MS.gene73807:CDS 65.0%
GACGGTGGAGACGGTGGAGA+AGG - chr4.4:31341949-31341968 None:intergenic 65.0%
GATGACGACGGAAGACGCGG+CGG - chr4.4:31341520-31341539 None:intergenic 65.0%
GGCGATGACGACGGAAGACG+CGG - chr4.4:31341523-31341542 None:intergenic 65.0%
GGCGGCTGAGGCAGAAAGTG+TGG + chr4.4:31342098-31342117 MS.gene73807:CDS 65.0%
GGGACTCTGGTAACCGCCGT+CGG - chr4.4:31341794-31341813 None:intergenic 65.0%
GGTCCAGCAGTCTTCGCGGA+CGG - chr4.4:31341551-31341570 None:intergenic 65.0%
GGTGGAGAAGGTGGAGACGG+TGG - chr4.4:31341937-31341956 None:intergenic 65.0%
GGTGGAGACGGTGGAGAAGG+TGG - chr4.4:31341946-31341965 None:intergenic 65.0%
GTCCAGCAGTCTTCGCGGAC+GGG - chr4.4:31341550-31341569 None:intergenic 65.0%
GTCGAGGTAGCGTTCACCCC+AGG - chr4.4:31341602-31341621 None:intergenic 65.0%
GTGGACGTCGTTGACGGCGT+CGG - chr4.4:31341668-31341687 None:intergenic 65.0%
TCCACCCTCATCGACGCCTG+GGG + chr4.4:31341583-31341602 MS.gene73807:CDS 65.0%
TCCAGCAGTCTTCGCGGACG+GGG - chr4.4:31341549-31341568 None:intergenic 65.0%
! CGCGGCGGAACGGAGTTGAT+AGG - chr4.4:31341505-31341524 None:intergenic 65.0%
!! GTTCACCCCAGGCGTCGATG+AGG - chr4.4:31341591-31341610 None:intergenic 65.0%
ACCGTCTCCACCGTCGCCTC+CGG + chr4.4:31341954-31341973 MS.gene73807:CDS 70.0%
CATCCGGTCGGTCCCCGATC+CGG + chr4.4:31341991-31342010 MS.gene73807:CDS 70.0%
CGACGGAAGACGCGGCGGAA+CGG - chr4.4:31341515-31341534 None:intergenic 70.0%
GGCGGCGTGGACGTCGTTGA+CGG - chr4.4:31341674-31341693 None:intergenic 70.0%
GTCAACGACGTCCACGCCGC+CGG + chr4.4:31341673-31341692 MS.gene73807:CDS 70.0%
GTTCCGGATCGGGGACCGAC+CGG - chr4.4:31341997-31342016 None:intergenic 70.0%
TCCCCGTCCGCGAAGACTGC+TGG + chr4.4:31341545-31341564 MS.gene73807:CDS 70.0%
!! ACCCCAGGCGTCGATGAGGG+TGG - chr4.4:31341587-31341606 None:intergenic 70.0%
ATCCACGCCGGAGGCGACGG+TGG - chr4.4:31341964-31341983 None:intergenic 75.0%
GCCGGAGGCGACGGTGGAGA+CGG - chr4.4:31341958-31341977 None:intergenic 75.0%
GGAGGCGACGGTGGAGACGG+TGG - chr4.4:31341955-31341974 None:intergenic 75.0%
! CTCCACCGTCGCCTCCGGCG+TGG + chr4.4:31341959-31341978 MS.gene73807:CDS 80.0%
! GGCGTTCGCGGCGGCTGCTG+CGG + chr4.4:31342074-31342093 MS.gene73807:CDS 80.0%
! GTTCGCGGCGGCTGCTGCGG+CGG + chr4.4:31342077-31342096 MS.gene73807:CDS 80.0%
! GGCTGCTGCGGCGGCGGCTG+AGG + chr4.4:31342086-31342105 MS.gene73807:CDS 85.0%
! CGCGGCGGCTGCTGCGGCGG+CGG + chr4.4:31342080-31342099 MS.gene73807:CDS 90.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 31341475 31342425 31341475 ID=MS.gene73807
chr4.4 mRNA 31341475 31342425 31341475 ID=MS.gene73807.t1;Parent=MS.gene73807
chr4.4 exon 31341475 31342425 31341475 ID=MS.gene73807.t1.exon1;Parent=MS.gene73807.t1
chr4.4 CDS 31341475 31342425 31341475 ID=cds.MS.gene73807.t1;Parent=MS.gene73807.t1
Gene Sequence

>MS.gene73807

ATGGACATCATCGCCGGAGCTCCGTCACCTATCAACTCCGTTCCGCCGCGTCTTCCGTCGTCATCGCCGTTCCCCGTCCGCGAAGACTGCTGGACCGAAGACGCAACTTCCACCCTCATCGACGCCTGGGGTGAACGCTACCTCGACCTTAACCGCGGTAACCTTCGTCAGAAAACTTGGCAAGAGGTTGCCGACGCCGTCAACGACGTCCACGCCGCCGGTAACAAGAAAGCGCGACGTACCGACGTTCAGTGCAAAAACCGAATCGACACGTTAAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGAATCCGACGGCGGTTACCAGAGTCCCTGGCCGTTTTTCACTCGTCTTGACGTTCTCATCGGCGATACTTTTCCGGTCAAAAAACTCTCCCCGCCGGTGAATGTACGGTCTACTCCAACCGTCGTCAAACGTCCACCTCCTCAATCTCCACCGTCTCCACCTTCTCCACCGTCTCCACCGTCGCCTCCGGCGTGGATAATCTCTCATCCGGTCGGTCCCCGATCCGGAACACAAAAACGTCCGGCAATGGCGAAAAGAGACGAAGCATCGTTCCGGCGGAATTTCTCGGCGTTCGCGGCGGCTGCTGCGGCGGCGGCTGAGGCAGAAAGTGTGGAGTCAGAGGAATGGAGGGGGAAGAAAGGAAGAGAAAACGATGGGACCCATAAGGAGTTTGGTTTCAGAGAGCTCGCTCAGGCTATAGAGAGATTCAGTGAAGTATATGAAAGAGTTGAAGCTTCAAAACAGAGACAAATGGTGGAATTGGAGAAGCAGAGGATGCAGTTTGTGAAGGATTTGGAGTATCAGAGAATGCAGTTATACATGGAAACGCAGGTTCAGCTTCAGAAAATCAAACGCACTAAACGTGCTTCTGGTTCCGGTGAGCTTAACCTGTTTCAAATTTATGATCATTGTATTTGA
Protein sequence

>MS.gene73807.t1

MDIIAGAPSPINSVPPRLPSSSPFPVREDCWTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDVHAAGNKKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPVKKLSPPVNVRSTPTVVKRPPPQSPPSPPSPPSPPSPPAWIISHPVGPRSGTQKRPAMAKRDEASFRRNFSAFAAAAAAAAEAESVESEEWRGKKGRENDGTHKEFGFRELAQAIERFSEVYERVEASKQRQMVELEKQRMQFVKDLEYQRMQLYMETQVQLQKIKRTKRASGSGELNLFQIYDHCI