Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73818.t1 | XP_003607570.1 | 95 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 4.20E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73818.t1 | Q9S7Y1 | 45.6 | 171 | 86 | 3 | 68 | 235 | 170 | 336 | 1.4e-30 | 134.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73818.t1 | G7JCJ8 | 95.0 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 3.1e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene73818.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73818.t1 | MTR_4g079760 | 95.000 | 260 | 9 | 1 | 1 | 260 | 1 | 256 | 0.0 | 502 |
| MS.gene73818.t1 | MTR_2g091190 | 73.077 | 260 | 57 | 3 | 1 | 260 | 1 | 247 | 4.50e-114 | 328 |
| MS.gene73818.t1 | MTR_2g015890 | 48.837 | 215 | 105 | 3 | 25 | 238 | 19 | 229 | 6.11e-62 | 196 |
| MS.gene73818.t1 | MTR_2g015890 | 51.266 | 158 | 73 | 2 | 25 | 181 | 19 | 173 | 1.96e-46 | 154 |
| MS.gene73818.t1 | MTR_4g087920 | 40.964 | 249 | 138 | 6 | 6 | 248 | 10 | 255 | 1.16e-42 | 146 |
| MS.gene73818.t1 | MTR_2g015890 | 48.889 | 135 | 65 | 2 | 104 | 238 | 1 | 131 | 2.12e-35 | 124 |
| MS.gene73818.t1 | MTR_1g093750 | 41.667 | 192 | 101 | 2 | 68 | 255 | 154 | 338 | 3.08e-34 | 126 |
| MS.gene73818.t1 | MTR_3g070970 | 38.265 | 196 | 106 | 4 | 64 | 248 | 65 | 256 | 1.45e-33 | 122 |
| MS.gene73818.t1 | MTR_3g096568 | 71.053 | 76 | 22 | 0 | 140 | 215 | 236 | 311 | 3.44e-33 | 123 |
| MS.gene73818.t1 | MTR_5g066080 | 39.634 | 164 | 72 | 3 | 64 | 201 | 28 | 190 | 8.13e-21 | 89.0 |
| MS.gene73818.t1 | MTR_5g032375 | 34.356 | 163 | 90 | 3 | 60 | 209 | 33 | 191 | 2.43e-20 | 86.7 |
| MS.gene73818.t1 | MTR_2g015890 | 53.846 | 78 | 33 | 1 | 104 | 181 | 1 | 75 | 6.82e-20 | 82.8 |
| MS.gene73818.t1 | MTR_8g032210 | 80.357 | 56 | 9 | 2 | 42 | 97 | 41 | 94 | 6.49e-19 | 80.1 |
| MS.gene73818.t1 | MTR_1g018820 | 76.316 | 38 | 9 | 0 | 103 | 140 | 58 | 95 | 1.39e-12 | 62.8 |
| MS.gene73818.t1 | MTR_5g014520 | 27.568 | 185 | 93 | 6 | 47 | 201 | 133 | 306 | 1.17e-11 | 64.3 |
| MS.gene73818.t1 | MTR_8g064700 | 28.814 | 177 | 90 | 5 | 79 | 225 | 248 | 418 | 5.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73818.t1 | AT1G68810 | 37.891 | 256 | 134 | 9 | 4 | 249 | 111 | 351 | 4.87e-33 | 124 |
| MS.gene73818.t1 | AT3G56770 | 39.535 | 172 | 95 | 4 | 67 | 236 | 40 | 204 | 1.80e-28 | 108 |
| MS.gene73818.t1 | AT3G25710 | 41.830 | 153 | 88 | 1 | 68 | 220 | 128 | 279 | 7.05e-28 | 109 |
| MS.gene73818.t1 | AT2G40200 | 35.294 | 187 | 111 | 4 | 74 | 253 | 65 | 248 | 3.09e-26 | 103 |
| MS.gene73818.t1 | AT2G41130 | 36.199 | 221 | 126 | 5 | 25 | 236 | 13 | 227 | 3.78e-25 | 100 |
| MS.gene73818.t1 | AT4G38070 | 34.752 | 141 | 85 | 2 | 61 | 201 | 81 | 214 | 3.75e-17 | 79.0 |
| MS.gene73818.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
| MS.gene73818.t1 | AT4G37850 | 24.865 | 185 | 106 | 5 | 74 | 233 | 151 | 327 | 1.40e-11 | 63.9 |
Find 40 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAACTTTCTCTTTGGTTT+TGG | 0.189232 | 4.4:+31428684 | MS.gene73818:CDS |
| GATTGGGGTTATGATATATT+TGG | 0.190751 | 4.4:+31428592 | MS.gene73818:CDS |
| GACATTTGAAAGAGCTAAAA+AGG | 0.203088 | 4.4:+31430135 | MS.gene73818:CDS |
| AAAGCAGATATTGCAACTTT+TGG | 0.234706 | 4.4:+31430344 | MS.gene73818:CDS |
| AGTGATGCTTTAATTGAAAA+AGG | 0.247436 | 4.4:-31430248 | None:intergenic |
| TTATGGTTCAACTTTCTCTT+TGG | 0.279286 | 4.4:+31428678 | MS.gene73818:CDS |
| GAAGTAAACAATGAGGTAAT+TGG | 0.285315 | 4.4:+31428649 | MS.gene73818:CDS |
| TGTAGAGGCACCTGTTAAAA+TGG | 0.303301 | 4.4:+31428726 | MS.gene73818:CDS |
| GAATACAGACAGTTTCTTGC+TGG | 0.381216 | 4.4:+31430428 | MS.gene73818:CDS |
| GAGGTAATTGGAAGTGGTTA+TGG | 0.384357 | 4.4:+31428661 | MS.gene73818:CDS |
| CTTATTTCATCATTGTCCTT+TGG | 0.388296 | 4.4:-31430191 | None:intergenic |
| TGTCATTCCAGGTGCTTTGA+AGG | 0.393290 | 4.4:+31428861 | MS.gene73818:CDS |
| GGAGATGCTACTGAGAGAAT+TGG | 0.414764 | 4.4:+31428613 | MS.gene73818:CDS |
| GGAAATGGAAGGTTATGATT+GGG | 0.418530 | 4.4:+31428576 | MS.gene73818:CDS |
| ACACTTCGTTGTGTCATTCC+AGG | 0.420229 | 4.4:+31428850 | MS.gene73818:CDS |
| TGGAAATGGAAGGTTATGAT+TGG | 0.437370 | 4.4:+31428575 | MS.gene73818:CDS |
| GAACAAGAGGGAGGTTGGAA+TGG | 0.468944 | 4.4:+31430221 | MS.gene73818:CDS |
| CAAGCTCTTAAGTCTGTACT+TGG | 0.491840 | 4.4:+31430461 | MS.gene73818:CDS |
| AACAATGAGGTAATTGGAAG+TGG | 0.504571 | 4.4:+31428655 | MS.gene73818:CDS |
| TTGAAGAACAAGAGGGAGGT+TGG | 0.512376 | 4.4:+31430216 | MS.gene73818:CDS |
| AATAAGCGTTGAAGAACAAG+AGG | 0.524950 | 4.4:+31430208 | MS.gene73818:CDS |
| CTTATATTAGACAATAAACC+TGG | 0.525756 | 4.4:-31430287 | None:intergenic |
| CCTGTTAAAATGGAAGGAAA+AGG | 0.530795 | 4.4:+31428736 | MS.gene73818:CDS |
| GAGGCACCTGTTAAAATGGA+AGG | 0.536082 | 4.4:+31428730 | MS.gene73818:CDS |
| CTATGTTGTGAATATCAACC+AGG | 0.546737 | 4.4:+31430269 | MS.gene73818:CDS |
| GAAATGGAAGGTTATGATTG+GGG | 0.551297 | 4.4:+31428577 | MS.gene73818:CDS |
| ATGGACAAAGCATCATTACT+TGG | 0.558251 | 4.4:+31430101 | MS.gene73818:CDS |
| CAGAGAGGAGGAGAAGAGCT+AGG | 0.569549 | 4.4:+31428809 | MS.gene73818:CDS |
| CAAAGCATCATTACTTGGTG+AGG | 0.575226 | 4.4:+31430106 | MS.gene73818:CDS |
| CAAGTACAGACTTAAGAGCT+TGG | 0.585666 | 4.4:-31430460 | None:intergenic |
| ATCATAGTGAGGCAGAGAGG+AGG | 0.598403 | 4.4:+31428797 | MS.gene73818:CDS |
| GAACTAACCTTCAAAGCACC+TGG | 0.603639 | 4.4:-31428868 | None:intergenic |
| GGAGAGAGGGGAGCTTGTAG+AGG | 0.606852 | 4.4:+31428711 | MS.gene73818:CDS |
| TACTTGGCTATGGAAATGGA+AGG | 0.619525 | 4.4:+31428565 | None:intergenic |
| TGAAGGTTTAATGATACCAA+AGG | 0.625000 | 4.4:+31430175 | MS.gene73818:CDS |
| AATGAAGCACAAGCATGTGA+AGG | 0.642340 | 4.4:+31430158 | MS.gene73818:CDS |
| AGAATCATAGTGAGGCAGAG+AGG | 0.654591 | 4.4:+31428794 | MS.gene73818:CDS |
| AGCTTTGAAGAATCATAGTG+AGG | 0.662555 | 4.4:+31428786 | MS.gene73818:CDS |
| AGCGTTGAAGAACAAGAGGG+AGG | 0.722418 | 4.4:+31430212 | MS.gene73818:CDS |
| ATAAGCGTTGAAGAACAAGA+GGG | 0.752312 | 4.4:+31430209 | MS.gene73818:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTAATAACCAATTATAT+TGG | + | chr4.4:31429013-31429032 | MS.gene73818:intron | 15.0% |
| !! | AGAAATATGTCTTCAAATTA+AGG | - | chr4.4:31429586-31429605 | None:intergenic | 20.0% |
| !! | ATCTTATAAGTGCTTAATTT+AGG | - | chr4.4:31428964-31428983 | None:intergenic | 20.0% |
| !! | CAAATTTCTATGATCTAAAT+GGG | - | chr4.4:31429757-31429776 | None:intergenic | 20.0% |
| !! | TAAATATTTGTGAAACTGTT+TGG | - | chr4.4:31429333-31429352 | None:intergenic | 20.0% |
| !! | TCAAATTTCTATGATCTAAA+TGG | - | chr4.4:31429758-31429777 | None:intergenic | 20.0% |
| !!! | CTTATTTTCATAAGCATTTT+AGG | - | chr4.4:31429264-31429283 | None:intergenic | 20.0% |
| !!! | TAACATGGTACTATTTTATT+GGG | + | chr4.4:31429479-31429498 | MS.gene73818:intron | 20.0% |
| !!! | TTTTCTCAATGATTAAAGAA+AGG | - | chr4.4:31428915-31428934 | None:intergenic | 20.0% |
| ! | AGTGATGCTTTAATTGAAAA+AGG | - | chr4.4:31430251-31430270 | None:intergenic | 25.0% |
| ! | ATACTTCACACCAATATAAT+TGG | - | chr4.4:31429026-31429045 | None:intergenic | 25.0% |
| ! | ATATGAAAGATATATACGAG+AGG | - | chr4.4:31429919-31429938 | None:intergenic | 25.0% |
| ! | ATCCAACATAGTTATGTATT+GGG | + | chr4.4:31429786-31429805 | MS.gene73818:intron | 25.0% |
| ! | CTTATATTAGACAATAAACC+TGG | - | chr4.4:31430290-31430309 | None:intergenic | 25.0% |
| ! | TAACTATCTCTCTAACAAAA+AGG | + | chr4.4:31429186-31429205 | MS.gene73818:intron | 25.0% |
| ! | TAGGTTGTCACAATTTATTT+AGG | - | chr4.4:31429394-31429413 | None:intergenic | 25.0% |
| ! | TATCCAACATAGTTATGTAT+TGG | + | chr4.4:31429785-31429804 | MS.gene73818:intron | 25.0% |
| ! | TCGTATATATCTTTCATATC+AGG | + | chr4.4:31429920-31429939 | MS.gene73818:intron | 25.0% |
| ! | TGGTAAATGATCATATGTAA+GGG | + | chr4.4:31429717-31429736 | MS.gene73818:intron | 25.0% |
| ! | TGTTGAATTTAAGTGTTAAG+TGG | - | chr4.4:31429971-31429990 | None:intergenic | 25.0% |
| !! | GATCTAAATGGGTTTATTAA+TGG | - | chr4.4:31429746-31429765 | None:intergenic | 25.0% |
| !! | GTAACATGGTACTATTTTAT+TGG | + | chr4.4:31429478-31429497 | MS.gene73818:intron | 25.0% |
| AAAGTCATTTACTCCATGTT+TGG | + | chr4.4:31428932-31428951 | MS.gene73818:intron | 30.0% | |
| AAGTCACAGTTTGATGTATT+TGG | + | chr4.4:31429527-31429546 | MS.gene73818:intron | 30.0% | |
| ACTGAGAGAATTGGTAAAAA+TGG | + | chr4.4:31428622-31428641 | MS.gene73818:CDS | 30.0% | |
| AGCTAGTTATTTGGTTGATT+AGG | + | chr4.4:31429414-31429433 | MS.gene73818:intron | 30.0% | |
| AGGTAAAATCAAGCTTCAAA+TGG | + | chr4.4:31429454-31429473 | MS.gene73818:intron | 30.0% | |
| ATACAAGATGAGATGGATAA+TGG | - | chr4.4:31429639-31429658 | None:intergenic | 30.0% | |
| ATATTTGTGAAACTGTTTGG+TGG | - | chr4.4:31429330-31429349 | None:intergenic | 30.0% | |
| ATGTCTTCAAATTAAGGCTT+TGG | - | chr4.4:31429580-31429599 | None:intergenic | 30.0% | |
| CTGGTAAATGATCATATGTA+AGG | + | chr4.4:31429716-31429735 | MS.gene73818:intron | 30.0% | |
| CTTATTTCATCATTGTCCTT+TGG | - | chr4.4:31430194-31430213 | None:intergenic | 30.0% | |
| GAAGTAAACAATGAGGTAAT+TGG | + | chr4.4:31428649-31428668 | MS.gene73818:CDS | 30.0% | |
| GACATTTGAAAGAGCTAAAA+AGG | + | chr4.4:31430135-31430154 | MS.gene73818:CDS | 30.0% | |
| GATTGGGGTTATGATATATT+TGG | + | chr4.4:31428592-31428611 | MS.gene73818:CDS | 30.0% | |
| GCTAGTTATTTGGTTGATTA+GGG | + | chr4.4:31429415-31429434 | MS.gene73818:intron | 30.0% | |
| GGTAAATGATCATATGTAAG+GGG | + | chr4.4:31429718-31429737 | MS.gene73818:intron | 30.0% | |
| TCCAACATAGTTATGTATTG+GGG | + | chr4.4:31429787-31429806 | MS.gene73818:intron | 30.0% | |
| TGAAGGTTTAATGATACCAA+AGG | + | chr4.4:31430175-31430194 | MS.gene73818:CDS | 30.0% | |
| TTAAGTTTAGCGTATAGATG+TGG | - | chr4.4:31429876-31429895 | None:intergenic | 30.0% | |
| TTATGGTTCAACTTTCTCTT+TGG | + | chr4.4:31428678-31428697 | MS.gene73818:CDS | 30.0% | |
| TTCTTCAATACAAGATGAGA+TGG | - | chr4.4:31429646-31429665 | None:intergenic | 30.0% | |
| ! | AAAGCAGATATTGCAACTTT+TGG | + | chr4.4:31430344-31430363 | MS.gene73818:CDS | 30.0% |
| ! | ATCAACCAAATAACTAGCTT+AGG | - | chr4.4:31429413-31429432 | None:intergenic | 30.0% |
| ! | ATCTTGTATTGAAGAAGTGT+TGG | + | chr4.4:31429650-31429669 | MS.gene73818:intron | 30.0% |
| ! | ATTTAGGTTCTATCCAAACA+TGG | - | chr4.4:31428948-31428967 | None:intergenic | 30.0% |
| ! | TGACTAGTTAGATTTCATAG+TGG | - | chr4.4:31429077-31429096 | None:intergenic | 30.0% |
| ! | TTTCCTTTTTATGACACAGA+TGG | + | chr4.4:31430082-31430101 | MS.gene73818:intron | 30.0% |
| !! | TCATAGTGGATATTAGTCAT+CGG | - | chr4.4:31429063-31429082 | None:intergenic | 30.0% |
| !! | TCTTGTATTGAAGAAGTGTT+GGG | + | chr4.4:31429651-31429670 | MS.gene73818:intron | 30.0% |
| !! | TTCAACTTTCTCTTTGGTTT+TGG | + | chr4.4:31428684-31428703 | MS.gene73818:CDS | 30.0% |
| !!! | TGGTTTTGAAGTAAACAATG+AGG | + | chr4.4:31428642-31428661 | MS.gene73818:CDS | 30.0% |
| !!! | TTTCTCTTTGGTTTTGGATA+GGG | + | chr4.4:31428690-31428709 | MS.gene73818:CDS | 30.0% |
| AACAATGAGGTAATTGGAAG+TGG | + | chr4.4:31428655-31428674 | MS.gene73818:CDS | 35.0% | |
| AAGCTTCAAATGGTGTAACA+TGG | + | chr4.4:31429464-31429483 | MS.gene73818:intron | 35.0% | |
| ACTACAATAGACCGATGATT+AGG | + | chr4.4:31429830-31429849 | MS.gene73818:intron | 35.0% | |
| ATCCGAGTCTGATATCATAT+AGG | + | chr4.4:31429153-31429172 | MS.gene73818:intron | 35.0% | |
| ATCTAACTAGTCACCTTTAG+TGG | + | chr4.4:31429084-31429103 | MS.gene73818:intron | 35.0% | |
| CACCTATATGATATCAGACT+CGG | - | chr4.4:31429158-31429177 | None:intergenic | 35.0% | |
| CCTGTTAAAATGGAAGGAAA+AGG | + | chr4.4:31428736-31428755 | MS.gene73818:CDS | 35.0% | |
| CTATGTTGTGAATATCAACC+AGG | + | chr4.4:31430269-31430288 | MS.gene73818:CDS | 35.0% | |
| CTCTTAATGGTCCTAATCAT+CGG | - | chr4.4:31429844-31429863 | None:intergenic | 35.0% | |
| GAAATGGAAGGTTATGATTG+GGG | + | chr4.4:31428577-31428596 | MS.gene73818:CDS | 35.0% | |
| GACAACCTAAGCTAGTTATT+TGG | + | chr4.4:31429405-31429424 | MS.gene73818:intron | 35.0% | |
| GATTAGGGTGATGAAAAGAA+GGG | + | chr4.4:31429430-31429449 | MS.gene73818:intron | 35.0% | |
| GGAAAAACTTTGATTAGGAG+GGG | - | chr4.4:31429115-31429134 | None:intergenic | 35.0% | |
| GGAAATGGAAGGTTATGATT+GGG | + | chr4.4:31428576-31428595 | MS.gene73818:CDS | 35.0% | |
| GGGAAAAACTTTGATTAGGA+GGG | - | chr4.4:31429116-31429135 | None:intergenic | 35.0% | |
| TAAGAGCAAGAAAAAGAAGG+AGG | + | chr4.4:31430510-31430529 | MS.gene73818:CDS | 35.0% | |
| TCCCCAATACATAACTATGT+TGG | - | chr4.4:31429791-31429810 | None:intergenic | 35.0% | |
| TCTAACTAGTCACCTTTAGT+GGG | + | chr4.4:31429085-31429104 | MS.gene73818:intron | 35.0% | |
| TCTCGGGAAAAACTTTGATT+AGG | - | chr4.4:31429120-31429139 | None:intergenic | 35.0% | |
| TGATTAGGGTGATGAAAAGA+AGG | + | chr4.4:31429429-31429448 | MS.gene73818:intron | 35.0% | |
| TGCTAAGAGCAAGAAAAAGA+AGG | + | chr4.4:31430507-31430526 | MS.gene73818:CDS | 35.0% | |
| TGGAAATGGAAGGTTATGAT+TGG | + | chr4.4:31428575-31428594 | MS.gene73818:CDS | 35.0% | |
| TGTCCATCTGTGTCATAAAA+AGG | - | chr4.4:31430088-31430107 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGTGGAACTTA+TGG | - | chr4.4:31429321-31429340 | None:intergenic | 35.0% |
| ! | ATGGACAAAGCATCATTACT+TGG | + | chr4.4:31430101-31430120 | MS.gene73818:CDS | 35.0% |
| ! | TGGTAGATTTTCTGTTTCAC+AGG | + | chr4.4:31430481-31430500 | MS.gene73818:CDS | 35.0% |
| !! | AATAAGCGTTGAAGAACAAG+AGG | + | chr4.4:31430208-31430227 | MS.gene73818:CDS | 35.0% |
| !! | AGCTTTGAAGAATCATAGTG+AGG | + | chr4.4:31428786-31428805 | MS.gene73818:CDS | 35.0% |
| !! | ATAAGCGTTGAAGAACAAGA+GGG | + | chr4.4:31430209-31430228 | MS.gene73818:CDS | 35.0% |
| !! | CCTTTTCCTTCCATTTTAAC+AGG | - | chr4.4:31428739-31428758 | None:intergenic | 35.0% |
| !!! | CTTTCTCTTTGGTTTTGGAT+AGG | + | chr4.4:31428689-31428708 | MS.gene73818:CDS | 35.0% |
| AATGAAGCACAAGCATGTGA+AGG | + | chr4.4:31430158-31430177 | MS.gene73818:CDS | 40.0% | |
| CAAGCTCTTAAGTCTGTACT+TGG | + | chr4.4:31430461-31430480 | MS.gene73818:CDS | 40.0% | |
| CAAGTACAGACTTAAGAGCT+TGG | - | chr4.4:31430463-31430482 | None:intergenic | 40.0% | |
| CGGGAAAAACTTTGATTAGG+AGG | - | chr4.4:31429117-31429136 | None:intergenic | 40.0% | |
| CTTGTGAAGCTATGCTTACA+AGG | - | chr4.4:31429510-31429529 | None:intergenic | 40.0% | |
| GAATACAGACAGTTTCTTGC+TGG | + | chr4.4:31430428-31430447 | MS.gene73818:CDS | 40.0% | |
| GAGGTAATTGGAAGTGGTTA+TGG | + | chr4.4:31428661-31428680 | MS.gene73818:CDS | 40.0% | |
| GATCCTTTAAGCAAAGTCTC+GGG | - | chr4.4:31429136-31429155 | None:intergenic | 40.0% | |
| GGAGTATAAACCATGCTAGT+TGG | + | chr4.4:31429687-31429706 | MS.gene73818:intron | 40.0% | |
| GGATCCTTTAAGCAAAGTCT+CGG | - | chr4.4:31429137-31429156 | None:intergenic | 40.0% | |
| GTGTTGGGAGCTTGAAAATT+TGG | + | chr4.4:31429666-31429685 | MS.gene73818:intron | 40.0% | |
| TAGTTATGTATTGGGGAGTC+CGG | + | chr4.4:31429794-31429813 | MS.gene73818:intron | 40.0% | |
| TGTAGTTTCTAACACTCTCC+CGG | - | chr4.4:31429816-31429835 | None:intergenic | 40.0% | |
| TTTCCCGAGACTTTGCTTAA+AGG | + | chr4.4:31429130-31429149 | MS.gene73818:intron | 40.0% | |
| ! | CAAAGCATCATTACTTGGTG+AGG | + | chr4.4:31430106-31430125 | MS.gene73818:CDS | 40.0% |
| ! | GCAGATATTGCAACTTTTGG+AGG | + | chr4.4:31430347-31430366 | MS.gene73818:CDS | 40.0% |
| !! | GTGGTGTTGATGTCTCTTAA+TGG | - | chr4.4:31429857-31429876 | None:intergenic | 40.0% |
| !! | TGTAGAGGCACCTGTTAAAA+TGG | + | chr4.4:31428726-31428745 | MS.gene73818:CDS | 40.0% |
| AGAATCATAGTGAGGCAGAG+AGG | + | chr4.4:31428794-31428813 | MS.gene73818:CDS | 45.0% | |
| AGGGTGATGAAAAGAAGGGT+AGG | + | chr4.4:31429434-31429453 | MS.gene73818:intron | 45.0% | |
| AGTTATGTATTGGGGAGTCC+GGG | + | chr4.4:31429795-31429814 | MS.gene73818:intron | 45.0% | |
| ATTAGTCATCGGCAACAACG+CGG | - | chr4.4:31429052-31429071 | None:intergenic | 45.0% | |
| CCAGTTACTACCAACTAGCA+TGG | - | chr4.4:31429700-31429719 | None:intergenic | 45.0% | |
| GGAGATGCTACTGAGAGAAT+TGG | + | chr4.4:31428613-31428632 | MS.gene73818:CDS | 45.0% | |
| TGTCATTCCAGGTGCTTTGA+AGG | + | chr4.4:31428861-31428880 | MS.gene73818:CDS | 45.0% | |
| TTGAAGAACAAGAGGGAGGT+TGG | + | chr4.4:31430216-31430235 | MS.gene73818:CDS | 45.0% | |
| ! | ACACTTCGTTGTGTCATTCC+AGG | + | chr4.4:31428850-31428869 | MS.gene73818:CDS | 45.0% |
| ! | GAACTAACCTTCAAAGCACC+TGG | - | chr4.4:31428871-31428890 | None:intergenic | 45.0% |
| ! | GAGGCACCTGTTAAAATGGA+AGG | + | chr4.4:31428730-31428749 | MS.gene73818:CDS | 45.0% |
| !! | CCATGCTAGTTGGTAGTAAC+TGG | + | chr4.4:31429697-31429716 | MS.gene73818:intron | 45.0% |
| !! | TAAGGCTTTGGAGAAGATGC+AGG | - | chr4.4:31429568-31429587 | None:intergenic | 45.0% |
| !!! | TGGTTTTGGATAGGGAGAGA+GGG | + | chr4.4:31428698-31428717 | MS.gene73818:CDS | 45.0% |
| !!! | TTGGTTTTGGATAGGGAGAG+AGG | + | chr4.4:31428697-31428716 | MS.gene73818:CDS | 45.0% |
| ATCATAGTGAGGCAGAGAGG+AGG | + | chr4.4:31428797-31428816 | MS.gene73818:CDS | 50.0% | |
| GAACAAGAGGGAGGTTGGAA+TGG | + | chr4.4:31430221-31430240 | MS.gene73818:CDS | 50.0% | |
| GGAGAAGATGCAGGCATACA+TGG | - | chr4.4:31429559-31429578 | None:intergenic | 50.0% | |
| ! | AGCGTTGAAGAACAAGAGGG+AGG | + | chr4.4:31430212-31430231 | MS.gene73818:CDS | 50.0% |
| !!! | GGTTTTGGATAGGGAGAGAG+GGG | + | chr4.4:31428699-31428718 | MS.gene73818:CDS | 50.0% |
| CAGAGAGGAGGAGAAGAGCT+AGG | + | chr4.4:31428809-31428828 | MS.gene73818:CDS | 55.0% | |
| AGGAGGGGTGAGCCCACTAA+AGG | - | chr4.4:31429100-31429119 | None:intergenic | 60.0% | |
| AGTCATCGGCAACAACGCGG+TGG | - | chr4.4:31429049-31429068 | None:intergenic | 60.0% | |
| GGAGAGAGGGGAGCTTGTAG+AGG | + | chr4.4:31428711-31428730 | MS.gene73818:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 31428574 | 31430574 | 31428574 | ID=MS.gene73818 |
| chr4.4 | mRNA | 31428574 | 31430574 | 31428574 | ID=MS.gene73818.t1;Parent=MS.gene73818 |
| chr4.4 | exon | 31428574 | 31428882 | 31428574 | ID=MS.gene73818.t1.exon1;Parent=MS.gene73818.t1 |
| chr4.4 | CDS | 31428574 | 31428882 | 31428574 | ID=cds.MS.gene73818.t1;Parent=MS.gene73818.t1 |
| chr4.4 | exon | 31430101 | 31430574 | 31430101 | ID=MS.gene73818.t1.exon2;Parent=MS.gene73818.t1 |
| chr4.4 | CDS | 31430101 | 31430574 | 31430101 | ID=cds.MS.gene73818.t1;Parent=MS.gene73818.t1 |
| Gene Sequence |
| Protein sequence |
