AlfalfaGEDB | MS.gene73886

M. sativa cultivar XinJiangDaYe / MS.gene73886

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73886.t1	XP_003607550.1	98.6	208	0	1	1	208	26	230	1.80E-50	209.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73886.t1	F4IN23	60.3	189	67	2	20	208	42	222	2.4e-22	107.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73886.t1	G8A005	98.6	208	0	1	1	208	26	230	1.3e-50	209.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene73886.t1	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73886.t1	MTR_4g079500	97.608	209	2	1	1	209	26	231	3.85e-148	417
MS.gene73886.t1	MTR_2g090900	57.870	216	63	9	6	209	29	228	1.05e-53	176
MS.gene73886.t1	MTR_2g090900	58.140	215	62	9	6	208	29	227	1.10e-53	177
MS.gene73886.t1	MTR_2g078370	44.118	170	73	10	19	178	57	214	5.45e-24	96.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73886.t1	AT3G58120	50.718	209	75	7	19	209	41	239	4.14e-47	158
MS.gene73886.t1	AT3G58120	50.718	209	75	7	19	209	41	239	1.08e-46	159
MS.gene73886.t1	AT2G42380	47.739	199	80	5	20	210	42	224	5.44e-44	149
MS.gene73886.t1	AT2G42380	47.739	199	80	5	20	210	42	224	5.44e-44	149
MS.gene73886.t1	AT2G42380	47.980	198	79	5	20	209	42	223	4.73e-43	147
MS.gene73886.t1	AT2G42380	47.980	198	79	5	20	209	42	223	7.08e-43	149
MS.gene73886.t1	AT2G42380	46.316	190	78	5	20	201	42	215	5.18e-38	135

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Find 50 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTCGTCTACACTAAACA+TGG	0.622608	4.2:+30680662	None:intergenic
AAGAGGGGCACACAGACGTT+CGG	0.489835	4.2:-30680787	MS.gene73886:CDS
AATGATGAAGATGACAATAA+TGG	0.401593	4.2:-30680435	MS.gene73886:CDS
AATGTAGCTGATGGTGCTGG+TGG	0.623330	4.2:+30680615	None:intergenic
ACAATCAACAAAACCCTTCA+TGG	0.391610	4.2:-30680842	MS.gene73886:CDS
ACGAAGTGTGACTTCATTAC+AGG	0.377047	4.2:-30679944	MS.gene73886:intron
ACGTCTGTGTGCCCCTCTTC+TGG	0.291136	4.2:+30680791	None:intergenic
ACTTCTCGTCCACCAGAAGA+GGG	0.556593	4.2:-30680803	MS.gene73886:CDS
AGAAACTCGTCCACCCATGA+AGG	0.540302	4.2:+30680828	None:intergenic
AGAGGGAGATAGAGAGGCTG+AGG	0.553494	4.2:-30678977	MS.gene73886:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGGAACAGAGGATAATAA+CGG	-	chr4.2:30680486-30680505	MS.gene73886:CDS	30.0%
AGCCATGTAATACACATATT+TGG	+	chr4.2:30679489-30679508	None:intergenic	30.0%
ATACTACATGACAGTGTAAA+AGG	+	chr4.2:30680185-30680204	None:intergenic	30.0%
CAAGACAAAATCTTCAAAGA+TGG	-	chr4.2:30680128-30680147	MS.gene73886:intron	30.0%
GGTGAAATGAGAATATGTTA+AGG	+	chr4.2:30680164-30680183	None:intergenic	30.0%
GTCATTAAGATTACTACTAG+TGG	-	chr4.2:30680695-30680714	MS.gene73886:CDS	30.0%
TTACATTGAACATGACATGA+TGG	-	chr4.2:30679887-30679906	MS.gene73886:intron	30.0%
AAAAATTACTGACCCCAAGA+GGG	-	chr4.2:30679406-30679425	MS.gene73886:intron	35.0%
ACAATCAACAAAACCCTTCA+TGG	-	chr4.2:30678952-30678971	MS.gene73886:CDS	35.0%
ATGGAGACAATGAGTTTGAA+AGG	-	chr4.2:30679087-30679106	MS.gene73886:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	30678903	30680913	30678903	ID=MS.gene73886
chr4.2	mRNA	30678903	30680913	30678903	ID=MS.gene73886.t1;Parent=MS.gene73886
chr4.2	exon	30680381	30680913	30680381	ID=MS.gene73886.t1.exon1;Parent=MS.gene73886.t1
chr4.2	CDS	30680381	30680913	30680381	ID=cds.MS.gene73886.t1;Parent=MS.gene73886.t1
chr4.2	exon	30679945	30680035	30679945	ID=MS.gene73886.t1.exon2;Parent=MS.gene73886.t1
chr4.2	CDS	30679945	30680035	30679945	ID=cds.MS.gene73886.t1;Parent=MS.gene73886.t1
chr4.2	exon	30679667	30679719	30679667	ID=MS.gene73886.t1.exon3;Parent=MS.gene73886.t1
chr4.2	CDS	30679667	30679719	30679667	ID=cds.MS.gene73886.t1;Parent=MS.gene73886.t1
chr4.2	exon	30678903	30679017	30678903	ID=MS.gene73886.t1.exon4;Parent=MS.gene73886.t1
chr4.2	CDS	30678903	30679017	30678903	ID=cds.MS.gene73886.t1;Parent=MS.gene73886.t1

Gene Sequence

>MS.gene73886

ATGCCTAACCTTAAAACCATCTCACCAAGTAATGCTTCAAACTTTTCCAACAATCAACAAAACCCTTCATGGGTGGACGAGTTTCTTGACTTCTCGTCCACCAGAAGAGGGGCACACAGACGTTCGGCCAGTGACTCAGTGACCTTCATAGAAGCATCGATGATGGAGCATTGTCGTCGTAGGGATGGAGACAATGAGTTTGAAAGGTTTGATGATGAACAATTGATGTCCATGTTTAGTGTAGACGAGGTTTCGAGGAATAATACCATGATGCCACCACCAGCACCATCAGCTACATTGTCATCTAACTCTAACCCTTCAACTCCTTCTGATCATAACAGCATCAATGATGACAAAGAGGAAGATGAGGAGGAAAAGATGCAACAGAAACAATTGAAGCATGAATCTGATGAGGATGAAATTGGTGAATGCAAACAGGAAAATGGAGGAGTTGTGAATGATGAAGATGACAATAATGGAAATACAACAACTTTTTCCAGTCCAAAAATTACTGACCCCAAGAGGGTCAAAAGGTACTACTCAAACATATTATTCATGTCACACAATTGTCACATTCCTAAAACCAAATATGTGTATTACATGGCTTACTTAATTTGTAGTATTATCAATGTGTGAGCGAGACAATTTAATGTTAATTTGTGTATTATTAATTCTAGCTAGCTATGGAGAACATGTTCTTCATATATAAATATATACATCAGAAGACCTTTACTTATTTATTTTAAAATTTTTTCTGGTGTTATTTTCTGATTGAAACATGAGCTAGCAGTGGTGATGGTGATTATGTAAGAATATATTTCTGTTCCTTTTCATTCATGTGATGGTGATTGTAATTACTGTGTTTGCATATGTATCAGAATCTTAGCAAATAGACAATCTGCACAAAGATCAAGAGTGAGGAAACTGCAATACATATCAGAGCTTGAACGAAGTGTGACTTCATTACAGGTGAATTTAATAAACTTACATTGAACATGACATGATGGTAACTTAATTTTATACTAAGCATATACTAATAATTTGATGTGTATAGTAATTAATAATAATATTATGATTATATTTTGTTTTAACTTATTATATAATGTATTGATGAATGAAGGCTGAAGTATCAGTGCTGTCACCACGGGTTGCATATTTGGATCATCAGAGGTTGCTTCTAAATGTTGATAACAGTGCTATCAAGCAAAGAATCGCAGCCCTAGCCCAAGACAAAATCTTCAAAGATGGTATGCTACATCCTTAACATATTCTCATTTCACCTTTTACACTGTCATGTAGTATAAGTTTTCTGATTCATTAATTAATCACTGTTAAGATTTTGTTCTGTATATATATTGTTATTGATACGTGGTTTTATACTTTCAGTATGTCATGTTCAAGAGAAAGTTTAGACAGAATTATAGGAAGAAAGTACAATTTAGTTTATAGAGATGTACTTTTCAATTGTACCACTAACTAAGCTTGCAATTGCATCTCCTCAAAATTGTTTAATTATTTTTACTATAGGAGAGTTATTAAATATTAATTATTAATGAATGAAAAAACTATATAATAGGCTTATAAATGGAACAGAGGATAATAACGGAATTAGCTTCTTTTTTGTGGAACTTTGCATCGTACGGCACATGAGTTGAATCAGAGCAATTATTAGAGAAGAGGACAGATTGATATTGATTTTAGTAAAAGCACTTGCATGCAGTTGCACTGCACACATATTAAAATGCTGTATGTCTGAGATAACCATGTGCTGTGTCTGCAACTAGTAGTTATAGTCATTAAGATTACTACTAGTGGTACTACTTAAAAACCTTCAAAATAATACTTATAGATTGATTATTAATATTATACATGTTACAATGAATATTAATAATGCAGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTGTATCACCAACAACAAAACATCAAGAACAATGCTACAGCAGCAGTAGTGTCACCATCTCCATCACCTAA

Protein sequence

>MS.gene73886.t1

MPNLKTISPSNASNFSNNQQNPSWVDEFLDFSSTRRGAHRRSASDSVTFIEASMMEHCRRRDGDNEFERFDDEQLMSMFSVDEVSRNNTMMPPPAPSATLSSNSNPSTPSDHNSINDDKEEDEEEKMQQKQLKHESDEDEIGECKQENGGVVNDEDDNNGNTTTFSSPKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQCYQAKNRSPSPRQNLQRCSSRSIEEGDREAEASVSPTTKHQEQCYSSSSVTISIT