Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73951.t1 | XP_024640656.1 | 59.2 | 390 | 133 | 9 | 1 | 378 | 1 | 376 | 1.00E-105 | 393.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73951.t1 | Q84WU6 | 38.6 | 389 | 154 | 11 | 8 | 334 | 14 | 379 | 3.7e-61 | 236.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73951.t1 | A0A396HRU8 | 59.2 | 390 | 133 | 9 | 1 | 378 | 1 | 376 | 7.2e-106 | 393.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene73951.t1 | TF | B3-ARF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73951.t1 | MTR_5g061890 | 60.914 | 394 | 122 | 10 | 1 | 379 | 1 | 377 | 6.54e-148 | 424 |
MS.gene73951.t1 | MTR_5g060780 | 60.152 | 394 | 125 | 10 | 1 | 379 | 1 | 377 | 5.87e-146 | 419 |
MS.gene73951.t1 | MTR_5g460920 | 59.898 | 394 | 126 | 10 | 1 | 379 | 1 | 377 | 8.31e-144 | 414 |
MS.gene73951.t1 | MTR_5g061220 | 55.473 | 402 | 121 | 12 | 1 | 361 | 8 | 392 | 4.06e-131 | 386 |
MS.gene73951.t1 | MTR_5g060630 | 52.506 | 419 | 141 | 9 | 1 | 365 | 1 | 415 | 5.60e-131 | 385 |
MS.gene73951.t1 | MTR_5g460740 | 52.506 | 419 | 141 | 9 | 1 | 365 | 1 | 415 | 5.60e-131 | 385 |
MS.gene73951.t1 | MTR_1g058210 | 56.233 | 377 | 129 | 10 | 4 | 361 | 3 | 362 | 1.19e-126 | 372 |
MS.gene73951.t1 | MTR_2g024430 | 51.733 | 375 | 144 | 16 | 4 | 361 | 11 | 365 | 1.20e-106 | 323 |
MS.gene73951.t1 | MTR_5g040880 | 50.997 | 351 | 144 | 11 | 3 | 338 | 1 | 338 | 1.60e-101 | 310 |
MS.gene73951.t1 | MTR_5g082140 | 48.305 | 354 | 151 | 11 | 4 | 338 | 3 | 343 | 8.64e-99 | 301 |
MS.gene73951.t1 | MTR_2g006270 | 46.750 | 400 | 178 | 14 | 1 | 374 | 1 | 391 | 7.58e-97 | 296 |
MS.gene73951.t1 | MTR_5g040740 | 50.309 | 324 | 134 | 11 | 4 | 312 | 3 | 314 | 2.11e-88 | 273 |
MS.gene73951.t1 | MTR_2g006380 | 44.162 | 394 | 178 | 16 | 7 | 374 | 14 | 391 | 9.25e-88 | 273 |
MS.gene73951.t1 | MTR_3g073420 | 40.470 | 383 | 169 | 10 | 3 | 333 | 6 | 381 | 9.04e-73 | 238 |
MS.gene73951.t1 | MTR_1g064430 | 36.754 | 419 | 188 | 14 | 8 | 364 | 22 | 425 | 8.27e-69 | 229 |
MS.gene73951.t1 | MTR_1g064430 | 36.754 | 419 | 188 | 14 | 8 | 364 | 35 | 438 | 9.39e-69 | 229 |
MS.gene73951.t1 | MTR_1g094960 | 37.722 | 395 | 161 | 14 | 8 | 337 | 14 | 388 | 5.11e-66 | 220 |
MS.gene73951.t1 | MTR_5g062970 | 54.808 | 208 | 82 | 7 | 13 | 214 | 38 | 239 | 9.38e-66 | 209 |
MS.gene73951.t1 | MTR_4g058930 | 37.824 | 386 | 170 | 12 | 13 | 337 | 12 | 388 | 1.30e-64 | 218 |
MS.gene73951.t1 | MTR_4g058930 | 37.824 | 386 | 170 | 12 | 13 | 337 | 12 | 388 | 1.89e-64 | 218 |
MS.gene73951.t1 | MTR_2g094570 | 37.203 | 379 | 174 | 13 | 13 | 336 | 11 | 380 | 6.34e-64 | 216 |
MS.gene73951.t1 | MTR_2g094570 | 37.203 | 379 | 174 | 13 | 13 | 336 | 11 | 380 | 8.60e-64 | 216 |
MS.gene73951.t1 | MTR_2g094570 | 37.203 | 379 | 174 | 13 | 13 | 336 | 67 | 436 | 1.79e-63 | 216 |
MS.gene73951.t1 | MTR_7g101280 | 34.264 | 394 | 190 | 10 | 8 | 338 | 26 | 413 | 9.32e-63 | 212 |
MS.gene73951.t1 | MTR_0041s0110 | 34.264 | 394 | 190 | 10 | 8 | 338 | 26 | 413 | 9.32e-63 | 212 |
MS.gene73951.t1 | MTR_5g060770 | 43.770 | 313 | 103 | 9 | 65 | 368 | 9 | 257 | 1.23e-61 | 202 |
MS.gene73951.t1 | MTR_7g101275 | 33.604 | 369 | 206 | 13 | 23 | 366 | 2 | 356 | 1.07e-52 | 180 |
MS.gene73951.t1 | MTR_2g014770 | 30.184 | 381 | 225 | 10 | 3 | 352 | 44 | 414 | 1.60e-47 | 171 |
MS.gene73951.t1 | MTR_2g014770 | 30.184 | 381 | 225 | 10 | 3 | 352 | 44 | 414 | 4.08e-47 | 170 |
MS.gene73951.t1 | MTR_4g021580 | 33.791 | 364 | 207 | 12 | 13 | 355 | 19 | 369 | 1.65e-46 | 168 |
MS.gene73951.t1 | MTR_0041s0120 | 31.481 | 378 | 214 | 12 | 23 | 366 | 2 | 368 | 2.23e-46 | 164 |
MS.gene73951.t1 | MTR_4g021580 | 33.791 | 364 | 207 | 12 | 13 | 355 | 19 | 369 | 3.07e-46 | 168 |
MS.gene73951.t1 | MTR_2g005240 | 33.903 | 351 | 200 | 11 | 13 | 340 | 23 | 364 | 9.20e-46 | 166 |
MS.gene73951.t1 | MTR_4g088210 | 30.914 | 372 | 213 | 12 | 13 | 355 | 38 | 394 | 3.43e-43 | 159 |
MS.gene73951.t1 | MTR_2g093740 | 30.645 | 372 | 211 | 12 | 13 | 352 | 56 | 412 | 3.47e-43 | 159 |
MS.gene73951.t1 | MTR_4g088210 | 30.914 | 372 | 213 | 12 | 13 | 355 | 38 | 394 | 3.55e-43 | 160 |
MS.gene73951.t1 | MTR_2g093740 | 30.000 | 400 | 227 | 14 | 13 | 376 | 56 | 438 | 5.35e-43 | 159 |
MS.gene73951.t1 | MTR_2g018690 | 31.844 | 358 | 210 | 11 | 1 | 332 | 8 | 357 | 6.22e-43 | 160 |
MS.gene73951.t1 | MTR_2g093740 | 30.000 | 400 | 227 | 14 | 13 | 376 | 56 | 438 | 6.27e-43 | 159 |
MS.gene73951.t1 | MTR_8g100050 | 32.370 | 346 | 205 | 11 | 13 | 337 | 59 | 396 | 2.00e-42 | 157 |
MS.gene73951.t1 | MTR_8g100050 | 32.370 | 346 | 205 | 11 | 13 | 337 | 59 | 396 | 4.75e-42 | 157 |
MS.gene73951.t1 | MTR_4g124900 | 31.339 | 351 | 202 | 11 | 8 | 332 | 18 | 355 | 5.66e-42 | 157 |
MS.gene73951.t1 | MTR_4g124900 | 31.339 | 351 | 202 | 11 | 8 | 332 | 18 | 355 | 5.99e-42 | 157 |
MS.gene73951.t1 | MTR_8g079492 | 29.805 | 359 | 215 | 9 | 1 | 332 | 8 | 356 | 2.33e-41 | 155 |
MS.gene73951.t1 | MTR_2g093740 | 29.056 | 413 | 227 | 14 | 13 | 376 | 56 | 451 | 2.34e-41 | 154 |
MS.gene73951.t1 | MTR_8g079492 | 29.805 | 359 | 215 | 9 | 1 | 332 | 8 | 356 | 2.44e-41 | 155 |
MS.gene73951.t1 | MTR_2g093740 | 29.056 | 413 | 227 | 14 | 13 | 376 | 56 | 451 | 3.57e-41 | 154 |
MS.gene73951.t1 | MTR_2g093740 | 29.056 | 413 | 227 | 14 | 13 | 376 | 56 | 451 | 4.30e-41 | 154 |
MS.gene73951.t1 | MTR_7g062540 | 30.939 | 362 | 223 | 11 | 13 | 356 | 14 | 366 | 1.01e-40 | 152 |
MS.gene73951.t1 | MTR_4g060460 | 29.695 | 394 | 234 | 10 | 13 | 374 | 54 | 436 | 1.48e-40 | 152 |
MS.gene73951.t1 | MTR_1g024025 | 30.925 | 346 | 213 | 10 | 8 | 333 | 38 | 377 | 1.66e-40 | 153 |
MS.gene73951.t1 | MTR_2g043250 | 29.915 | 351 | 207 | 11 | 8 | 332 | 18 | 355 | 2.43e-40 | 152 |
MS.gene73951.t1 | MTR_5g460910 | 35.276 | 326 | 116 | 8 | 52 | 368 | 13 | 252 | 4.64e-40 | 145 |
MS.gene73951.t1 | MTR_3g064050 | 29.201 | 363 | 196 | 10 | 8 | 332 | 21 | 360 | 6.90e-39 | 148 |
MS.gene73951.t1 | MTR_4g060460 | 30.400 | 375 | 217 | 10 | 13 | 355 | 54 | 416 | 7.83e-39 | 147 |
MS.gene73951.t1 | MTR_5g076270 | 28.933 | 356 | 210 | 10 | 6 | 332 | 17 | 358 | 5.22e-38 | 145 |
MS.gene73951.t1 | MTR_8g027440 | 31.856 | 361 | 216 | 12 | 13 | 355 | 29 | 377 | 1.52e-37 | 143 |
MS.gene73951.t1 | MTR_8g101360 | 29.944 | 354 | 201 | 10 | 10 | 332 | 28 | 365 | 7.39e-37 | 142 |
MS.gene73951.t1 | MTR_5g062960 | 54.955 | 111 | 40 | 1 | 235 | 335 | 1 | 111 | 1.18e-30 | 116 |
MS.gene73951.t1 | MTR_8g079492 | 29.577 | 284 | 167 | 7 | 72 | 332 | 1 | 274 | 5.97e-30 | 122 |
MS.gene73951.t1 | MTR_2g093740 | 29.433 | 282 | 166 | 9 | 117 | 376 | 38 | 308 | 1.63e-26 | 111 |
MS.gene73951.t1 | MTR_2g093740 | 29.433 | 282 | 166 | 9 | 117 | 376 | 38 | 308 | 1.85e-26 | 111 |
MS.gene73951.t1 | MTR_2g093740 | 28.136 | 295 | 166 | 9 | 117 | 376 | 38 | 321 | 7.15e-25 | 106 |
MS.gene73951.t1 | MTR_2g093740 | 28.136 | 295 | 166 | 9 | 117 | 376 | 38 | 321 | 8.12e-25 | 106 |
MS.gene73951.t1 | MTR_8g446900 | 24.653 | 288 | 192 | 8 | 61 | 332 | 10 | 288 | 2.16e-20 | 92.0 |
MS.gene73951.t1 | MTR_5g046120 | 45.455 | 99 | 50 | 4 | 66 | 161 | 26 | 123 | 7.63e-15 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73951.t1 | AT1G77850 | 38.918 | 388 | 154 | 12 | 8 | 334 | 14 | 379 | 2.52e-75 | 244 |
MS.gene73951.t1 | AT1G77850 | 38.918 | 388 | 154 | 12 | 8 | 334 | 14 | 379 | 2.60e-75 | 244 |
MS.gene73951.t1 | AT4G30080 | 39.698 | 398 | 155 | 15 | 13 | 344 | 19 | 397 | 1.12e-69 | 231 |
MS.gene73951.t1 | AT2G28350 | 37.028 | 397 | 173 | 15 | 6 | 337 | 3 | 387 | 6.87e-63 | 213 |
MS.gene73951.t1 | AT2G28350 | 37.028 | 397 | 173 | 15 | 6 | 337 | 3 | 387 | 8.57e-63 | 213 |
MS.gene73951.t1 | AT1G34390 | 34.561 | 353 | 189 | 12 | 13 | 340 | 27 | 362 | 1.06e-50 | 179 |
MS.gene73951.t1 | AT2G33860 | 31.746 | 378 | 220 | 11 | 13 | 365 | 54 | 418 | 3.39e-48 | 172 |
MS.gene73951.t1 | AT4G23980 | 33.333 | 336 | 203 | 9 | 13 | 332 | 12 | 342 | 1.05e-47 | 171 |
MS.gene73951.t1 | AT2G46530 | 33.333 | 348 | 186 | 12 | 13 | 332 | 21 | 350 | 1.07e-47 | 171 |
MS.gene73951.t1 | AT4G23980 | 33.333 | 336 | 203 | 9 | 13 | 332 | 12 | 342 | 1.12e-47 | 171 |
MS.gene73951.t1 | AT2G46530 | 33.333 | 348 | 186 | 12 | 13 | 332 | 42 | 371 | 1.36e-47 | 171 |
MS.gene73951.t1 | AT1G34310 | 35.072 | 345 | 186 | 12 | 10 | 332 | 24 | 352 | 1.63e-47 | 170 |
MS.gene73951.t1 | AT1G35520 | 34.503 | 342 | 186 | 12 | 13 | 332 | 27 | 352 | 9.67e-46 | 166 |
MS.gene73951.t1 | AT1G35240 | 33.616 | 354 | 195 | 13 | 13 | 342 | 27 | 364 | 3.32e-44 | 161 |
MS.gene73951.t1 | AT3G61830 | 32.448 | 339 | 201 | 11 | 13 | 332 | 25 | 354 | 1.04e-43 | 160 |
MS.gene73951.t1 | AT5G62000 | 32.174 | 345 | 207 | 10 | 13 | 337 | 61 | 398 | 1.59e-43 | 161 |
MS.gene73951.t1 | AT5G62000 | 32.174 | 345 | 207 | 10 | 13 | 337 | 61 | 398 | 1.59e-43 | 161 |
MS.gene73951.t1 | AT5G62000 | 32.174 | 345 | 207 | 10 | 13 | 337 | 61 | 398 | 1.59e-43 | 161 |
MS.gene73951.t1 | AT5G62000 | 32.174 | 345 | 207 | 10 | 13 | 337 | 61 | 398 | 1.59e-43 | 161 |
MS.gene73951.t1 | AT5G62000 | 32.174 | 345 | 207 | 10 | 13 | 337 | 61 | 398 | 1.83e-43 | 161 |
MS.gene73951.t1 | AT1G35540 | 32.749 | 342 | 192 | 11 | 13 | 332 | 27 | 352 | 6.19e-43 | 158 |
MS.gene73951.t1 | AT1G59750 | 32.153 | 339 | 204 | 10 | 13 | 332 | 22 | 353 | 8.14e-43 | 158 |
MS.gene73951.t1 | AT1G59750 | 32.153 | 339 | 204 | 10 | 13 | 332 | 22 | 353 | 8.41e-43 | 158 |
MS.gene73951.t1 | AT1G59750 | 32.153 | 339 | 204 | 10 | 13 | 332 | 22 | 353 | 1.04e-42 | 158 |
MS.gene73951.t1 | AT1G59750 | 32.153 | 339 | 204 | 10 | 13 | 332 | 22 | 353 | 1.04e-42 | 158 |
MS.gene73951.t1 | AT1G34410 | 33.333 | 342 | 190 | 12 | 13 | 332 | 27 | 352 | 2.13e-42 | 156 |
MS.gene73951.t1 | AT5G37020 | 29.213 | 356 | 205 | 11 | 8 | 332 | 17 | 356 | 2.18e-41 | 155 |
MS.gene73951.t1 | AT5G37020 | 29.213 | 356 | 205 | 11 | 8 | 332 | 17 | 356 | 3.21e-41 | 155 |
MS.gene73951.t1 | AT1G30330 | 31.742 | 356 | 207 | 12 | 5 | 332 | 10 | 357 | 5.80e-41 | 154 |
MS.gene73951.t1 | AT1G30330 | 31.609 | 348 | 207 | 11 | 8 | 332 | 20 | 359 | 1.04e-40 | 154 |
MS.gene73951.t1 | AT1G30330 | 31.609 | 348 | 207 | 11 | 8 | 332 | 20 | 359 | 1.04e-40 | 154 |
MS.gene73951.t1 | AT5G20730 | 31.143 | 350 | 204 | 11 | 8 | 332 | 19 | 356 | 2.54e-40 | 152 |
MS.gene73951.t1 | AT5G20730 | 31.161 | 353 | 201 | 13 | 8 | 332 | 19 | 357 | 2.96e-39 | 149 |
MS.gene73951.t1 | AT1G19220 | 29.310 | 348 | 209 | 10 | 10 | 332 | 20 | 355 | 3.01e-39 | 149 |
MS.gene73951.t1 | AT5G20730 | 31.161 | 353 | 201 | 13 | 8 | 332 | 19 | 357 | 3.56e-39 | 149 |
MS.gene73951.t1 | AT5G60450 | 29.474 | 380 | 215 | 14 | 10 | 355 | 38 | 398 | 1.82e-38 | 147 |
MS.gene73951.t1 | AT5G60450 | 29.474 | 380 | 215 | 14 | 10 | 355 | 62 | 422 | 2.16e-38 | 146 |
MS.gene73951.t1 | AT1G19850 | 30.925 | 346 | 212 | 11 | 9 | 333 | 50 | 389 | 5.28e-38 | 145 |
MS.gene73951.t1 | AT1G19850 | 30.925 | 346 | 212 | 11 | 9 | 333 | 39 | 378 | 6.75e-38 | 145 |
MS.gene73951.t1 | AT1G34170 | 30.028 | 353 | 216 | 12 | 13 | 346 | 25 | 365 | 1.80e-35 | 136 |
MS.gene73951.t1 | AT3G61830 | 32.281 | 285 | 169 | 9 | 64 | 332 | 27 | 303 | 5.79e-34 | 132 |
MS.gene73951.t1 | AT2G46530 | 34.800 | 250 | 132 | 8 | 100 | 332 | 28 | 263 | 1.04e-33 | 131 |
MS.gene73951.t1 | AT2G33860 | 31.461 | 267 | 158 | 8 | 117 | 365 | 2 | 261 | 3.25e-32 | 126 |
MS.gene73951.t1 | AT1G34170 | 28.448 | 348 | 202 | 11 | 13 | 346 | 25 | 339 | 5.71e-31 | 123 |
MS.gene73951.t1 | AT1G34170 | 28.448 | 348 | 202 | 11 | 13 | 346 | 25 | 339 | 9.19e-31 | 123 |
MS.gene73951.t1 | AT1G43950 | 36.150 | 213 | 106 | 8 | 13 | 212 | 27 | 222 | 8.10e-29 | 112 |
MS.gene73951.t1 | AT5G37020 | 28.309 | 272 | 160 | 9 | 85 | 332 | 1 | 261 | 2.37e-26 | 111 |
Find 114 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCATTGGATTGTTAAAATT+TGG | 0.112967 | 5.2:-50972060 | None:intergenic |
ATGAAGATTGTTTGGAATTC+TGG | 0.127863 | 5.2:+50972447 | MS.gene73951:CDS |
CTTCTTCGAATTCCCCTAAT+TGG | 0.184271 | 5.2:+50972535 | MS.gene73951:CDS |
GTTAACCGAGTCGGCGGTTT+TGG | 0.206731 | 5.2:+50972320 | MS.gene73951:CDS |
GCATGTTCCAAGTGACCTTT+TGG | 0.275383 | 5.2:-50971742 | None:intergenic |
AGGAGGGTGAAGAGGGAGGC+TGG | 0.281049 | 5.2:+50972286 | MS.gene73951:CDS |
GTGAAGAGGGAGGCTGGAAG+AGG | 0.299344 | 5.2:+50972292 | MS.gene73951:CDS |
CCTGAAGAATGTTCCAATTA+GGG | 0.299732 | 5.2:-50972548 | None:intergenic |
CCACAGGAGGAGCTGGTTCT+TGG | 0.300062 | 5.2:-50971930 | None:intergenic |
ACCTGAAGAATGTTCCAATT+AGG | 0.304192 | 5.2:-50972549 | None:intergenic |
GCGTTGTCGAAGGCAAAATT+TGG | 0.307258 | 5.2:+50971659 | MS.gene73951:CDS |
TGCCAAGGATTGACTAGGTT+TGG | 0.313165 | 5.2:-50973210 | None:intergenic |
TGTATTATCCAAGTCATAAT+TGG | 0.331214 | 5.2:+50972385 | MS.gene73951:CDS |
CCCTAATTGGAACATTCTTC+AGG | 0.342494 | 5.2:+50972548 | MS.gene73951:CDS |
TTTGGATTCTGCGGGATATT+AGG | 0.363066 | 5.2:-50973192 | None:intergenic |
CAAATTCTACATTCAATTGC+AGG | 0.366385 | 5.2:+50973333 | MS.gene73951:CDS |
TGGAATCTTGACGCCGGGGC+CGG | 0.386761 | 5.2:-50971692 | None:intergenic |
ATGACGCTATGAAGATTGTT+TGG | 0.387773 | 5.2:+50972439 | MS.gene73951:CDS |
GTAGAGAAACGGTGTCTATC+AGG | 0.389463 | 5.2:-50972153 | None:intergenic |
CCGATGTTCAAGGCCAAGTC+TGG | 0.398680 | 5.2:+50972103 | MS.gene73951:CDS |
TGAAGAGGGAGGCTGGAAGA+GGG | 0.400454 | 5.2:+50972293 | MS.gene73951:CDS |
TAAACGACTGAGTTCAGCTT+TGG | 0.405710 | 5.2:-50971712 | None:intergenic |
TGAAGATTGTTTGGAATTCT+GGG | 0.411575 | 5.2:+50972448 | MS.gene73951:CDS |
AATTGAATGTAGAATTTGTT+GGG | 0.424854 | 5.2:-50973328 | None:intergenic |
TAACAATCCAATGCCGTCTC+AGG | 0.429929 | 5.2:+50972068 | MS.gene73951:CDS |
GGTGAGATTGACAGTGGAGG+AGG | 0.429947 | 5.2:-50973268 | None:intergenic |
CGCTGAGATGATGCAGAGAT+AGG | 0.432301 | 5.2:-50971821 | None:intergenic |
TGGCAGACATGCGCCGGCCC+CGG | 0.432533 | 5.2:+50971679 | MS.gene73951:CDS |
AGCTTTGGAATCTTGACGCC+GGG | 0.433725 | 5.2:-50971697 | None:intergenic |
TACCGGAGTGAGGATGAGTT+TGG | 0.435570 | 5.2:-50971884 | None:intergenic |
AAGGAGACTGTCTGAGGTAG+TGG | 0.438861 | 5.2:-50971775 | None:intergenic |
CCAAGGTTTGGCTACGCGTC+AGG | 0.440106 | 5.2:-50973372 | None:intergenic |
CACCCTCCTTCTTTATGTGC+CGG | 0.454754 | 5.2:-50972272 | None:intergenic |
CGTTTCTCTACTGGCTGGAC+TGG | 0.455390 | 5.2:+50972165 | MS.gene73951:CDS |
CATAAAGAAGGAGGGTGAAG+AGG | 0.457435 | 5.2:+50972278 | MS.gene73951:CDS |
GATAGACACCGTTTCTCTAC+TGG | 0.461405 | 5.2:+50972156 | MS.gene73951:CDS |
CAATTGAATGTAGAATTTGT+TGG | 0.464823 | 5.2:-50973329 | None:intergenic |
TTATCATAGGTTAACTGGGA+TGG | 0.471984 | 5.2:+50973168 | MS.gene73951:intron |
GAGGAGCTGGTTCTTGGACT+TGG | 0.482484 | 5.2:-50971924 | None:intergenic |
ACACCACCGTCAATTGTTAC+CGG | 0.486756 | 5.2:-50971901 | None:intergenic |
CCTTCGACAACGCGTGGCTG+AGG | 0.488355 | 5.2:-50971649 | None:intergenic |
TTTGAAGAATGATCAGTCCC+TGG | 0.489333 | 5.2:+50972488 | MS.gene73951:CDS |
CAATTAGGGGAATTCGAAGA+AGG | 0.495700 | 5.2:-50972534 | None:intergenic |
AGAATGAAGATCATGAAGAA+AGG | 0.497234 | 5.2:-50971794 | None:intergenic |
CTCACTCCGGTAACAATTGA+CGG | 0.499475 | 5.2:+50971895 | MS.gene73951:CDS |
CCATCTTCGTCGGGAACCAC+AGG | 0.500195 | 5.2:-50971946 | None:intergenic |
ATCCAAACCTAGTCAATCCT+TGG | 0.508187 | 5.2:+50973208 | MS.gene73951:CDS |
CACATTGGAGATTGTTCCCA+GGG | 0.513167 | 5.2:-50972505 | None:intergenic |
CAACCTGCCAAGGATTGACT+AGG | 0.513736 | 5.2:-50973215 | None:intergenic |
TCGACAACGCGTGGCTGAGG+CGG | 0.515631 | 5.2:-50971646 | None:intergenic |
AAAAGCTCCTGAGACGGCAT+TGG | 0.515807 | 5.2:-50972075 | None:intergenic |
AAAATTTGGCAGACATGCGC+CGG | 0.516610 | 5.2:+50971673 | MS.gene73951:CDS |
GAGGAGGAAGTCGAAGGTGC+AGG | 0.519616 | 5.2:-50973252 | None:intergenic |
AAGATTGTTTCCATCTTCGT+CGG | 0.521879 | 5.2:-50971956 | None:intergenic |
TATAGTTGAACCTCCAGACT+TGG | 0.526294 | 5.2:-50972116 | None:intergenic |
TCGGGAACCACAGGAGGAGC+TGG | 0.527028 | 5.2:-50971937 | None:intergenic |
ATAAAGAAGGAGGGTGAAGA+GGG | 0.528210 | 5.2:+50972279 | MS.gene73951:CDS |
AGTCGAAGGTGCAGGTATGT+TGG | 0.528919 | 5.2:-50973244 | None:intergenic |
TGGCTGAGGCGGCAGAGACA+TGG | 0.530662 | 5.2:-50971635 | None:intergenic |
CCTCAGCCACGCGTTGTCGA+AGG | 0.531551 | 5.2:+50971649 | MS.gene73951:CDS |
TGACTAGGTTTGGATTCTGC+GGG | 0.534959 | 5.2:-50973200 | None:intergenic |
GATGAACTCTCAGCAAGTCT+AGG | 0.537540 | 5.2:-50973303 | None:intergenic |
AGATTGTTTCCATCTTCGTC+GGG | 0.537991 | 5.2:-50971955 | None:intergenic |
AGCTTCCAAAACCGCCGACT+CGG | 0.538802 | 5.2:-50972325 | None:intergenic |
CCTGTGGTTCCCGACGAAGA+TGG | 0.542076 | 5.2:+50971946 | MS.gene73951:CDS |
AAACCTAGTCAATCCTTGGC+AGG | 0.546100 | 5.2:+50973212 | MS.gene73951:CDS |
CCAGACTTGGCCTTGAACAT+CGG | 0.546481 | 5.2:-50972103 | None:intergenic |
AGGAGACTGTCTGAGGTAGT+GGG | 0.547225 | 5.2:-50971774 | None:intergenic |
TTGAAGAATGATCAGTCCCT+GGG | 0.547852 | 5.2:+50972489 | MS.gene73951:CDS |
TTTGGAAGCTGCGGAATTGG+CGG | 0.551783 | 5.2:+50972338 | MS.gene73951:CDS |
GAGTTTGGCGACAACTTCAT+CGG | 0.554023 | 5.2:-50971869 | None:intergenic |
ACACATTGGAGATTGTTCCC+AGG | 0.561486 | 5.2:-50972506 | None:intergenic |
CATGAAAACAATGGAATCGT+CGG | 0.561963 | 5.2:-50972214 | None:intergenic |
CTCAGCGGTTGATCTTCTTG+CGG | 0.563754 | 5.2:+50971837 | MS.gene73951:CDS |
TTGGAAACTTCAACCTGCCA+AGG | 0.564377 | 5.2:-50973225 | None:intergenic |
CAGTCCAGCCAGTAGAGAAA+CGG | 0.568162 | 5.2:-50972164 | None:intergenic |
GACACCGTTTCTCTACTGGC+TGG | 0.569539 | 5.2:+50972160 | MS.gene73951:CDS |
CAGCTTTGGAATCTTGACGC+CGG | 0.579151 | 5.2:-50971698 | None:intergenic |
TTGACTAGGTTTGGATTCTG+CGG | 0.579536 | 5.2:-50973201 | None:intergenic |
AATACGCCGGCACATAAAGA+AGG | 0.582192 | 5.2:+50972266 | MS.gene73951:CDS |
AAATCAGACCAATTATGACT+TGG | 0.584394 | 5.2:-50972393 | None:intergenic |
TCTGCGGGAGAGTTATCTGT+TGG | 0.584504 | 5.2:+50972243 | MS.gene73951:CDS |
AAATTCTACATTCAATTGCA+GGG | 0.586656 | 5.2:+50973334 | MS.gene73951:CDS |
CATTCAATTGCAGGGTCGAG+TGG | 0.586792 | 5.2:+50973342 | MS.gene73951:CDS |
ACTGTCTGAGGTAGTGGGGA+AGG | 0.593489 | 5.2:-50971769 | None:intergenic |
TTGTACCTCGTGAATGCGCG+CGG | 0.603239 | 5.2:+50972028 | MS.gene73951:CDS |
CGAAGAAGGATTAGACACAT+TGG | 0.604406 | 5.2:-50972520 | None:intergenic |
CGCCAAACTCATCCTCACTC+CGG | 0.604781 | 5.2:+50971882 | MS.gene73951:CDS |
CTGAAGAATGTTCCAATTAG+GGG | 0.615518 | 5.2:-50972547 | None:intergenic |
CGTCAATTGTTACCGGAGTG+AGG | 0.618461 | 5.2:-50971894 | None:intergenic |
GCGACAACTTCATCGGTGTG+AGG | 0.619720 | 5.2:-50971862 | None:intergenic |
ACGCCGGCACATAAAGAAGG+AGG | 0.622809 | 5.2:+50972269 | MS.gene73951:CDS |
GAGGGAGAAGTTAACCGAGT+CGG | 0.627289 | 5.2:+50972311 | MS.gene73951:CDS |
ATTGAATGTAGAATTTGTTG+GGG | 0.627689 | 5.2:-50973327 | None:intergenic |
CCAAGAACCAGCTCCTCCTG+TGG | 0.630584 | 5.2:+50971930 | MS.gene73951:CDS |
AAGAAGGAGGGTGAAGAGGG+AGG | 0.636512 | 5.2:+50972282 | MS.gene73951:CDS |
ATGTTCAAGGCCAAGTCTGG+AGG | 0.637068 | 5.2:+50972106 | MS.gene73951:CDS |
ATCAACCGCGCGCATTCACG+AGG | 0.638655 | 5.2:-50972033 | None:intergenic |
CGCCGGCACATAAAGAAGGA+GGG | 0.641777 | 5.2:+50972270 | MS.gene73951:CDS |
GGAGAAGTTAACCGAGTCGG+CGG | 0.643380 | 5.2:+50972314 | MS.gene73951:CDS |
TGAGGTGAGATTGACAGTGG+AGG | 0.644690 | 5.2:-50973271 | None:intergenic |
TCTTCGTCGGGAACCACAGG+AGG | 0.646761 | 5.2:-50971943 | None:intergenic |
TCTATCAGGATTCTTGCGAA+AGG | 0.647881 | 5.2:-50972139 | None:intergenic |
GGAGACTGTCTGAGGTAGTG+GGG | 0.652562 | 5.2:-50971773 | None:intergenic |
TTGAATGTAGAATTTGTTGG+GGG | 0.657320 | 5.2:-50973326 | None:intergenic |
AGTTATCTGTTGGAATACGC+CGG | 0.657595 | 5.2:+50972253 | MS.gene73951:CDS |
TGAAGAAAGGAGACTGTCTG+AGG | 0.660800 | 5.2:-50971781 | None:intergenic |
CTATCTCTGCATCATCTCAG+CGG | 0.677491 | 5.2:+50971822 | MS.gene73951:CDS |
TGTTGAGGTGAGATTGACAG+TGG | 0.681746 | 5.2:-50973274 | None:intergenic |
GCTTTGGAATCTTGACGCCG+GGG | 0.693460 | 5.2:-50971696 | None:intergenic |
TGAATGTAGAATTTGTTGGG+GGG | 0.703111 | 5.2:-50973325 | None:intergenic |
ACAGTGGAGGAGGAAGTCGA+AGG | 0.704506 | 5.2:-50973258 | None:intergenic |
TTGTGTAAGAGTCTTGACGT+AGG | 0.718748 | 5.2:-50971983 | None:intergenic |
ACTCCGGTAACAATTGACGG+TGG | 0.780092 | 5.2:+50971898 | MS.gene73951:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAATCTAATTATGTATT+TGG | - | chr5.2:50972603-50972622 | None:intergenic | 10.0% |
!! | TATGATAAAAAGATAAAAAA+TGG | - | chr5.2:50973156-50973175 | None:intergenic | 10.0% |
!! | TTACAAAATATAATTACAAT+TGG | - | chr5.2:50972754-50972773 | None:intergenic | 10.0% |
!!! | ATTTTTTATCTTTTTATCAT+AGG | + | chr5.2:50973155-50973174 | MS.gene73951:intron | 10.0% |
!! | AATAACATTAAACGAAGAAA+TGG | + | chr5.2:50972859-50972878 | MS.gene73951:intron | 20.0% |
!! | CTATACATAACAGAAAATTA+TGG | - | chr5.2:50972777-50972796 | None:intergenic | 20.0% |
!! | TGTATATCTTTGTTCTTTAT+AGG | + | chr5.2:50972721-50972740 | MS.gene73951:intron | 20.0% |
!! | TTTCTTCGTTTAATGTTATT+CGG | - | chr5.2:50972859-50972878 | None:intergenic | 20.0% |
!!! | AATTGAATGTAGAATTTGTT+GGG | - | chr5.2:50973331-50973350 | None:intergenic | 20.0% |
! | AAATAAAGATCCTACTTAGA+AGG | - | chr5.2:50973048-50973067 | None:intergenic | 25.0% |
! | AAATTCTACATTCAATTGCA+GGG | + | chr5.2:50973334-50973353 | MS.gene73951:CDS | 25.0% |
! | CAATTGAATGTAGAATTTGT+TGG | - | chr5.2:50973332-50973351 | None:intergenic | 25.0% |
! | CTGAAACTATAATTAGATCA+TGG | + | chr5.2:50972675-50972694 | MS.gene73951:intron | 25.0% |
! | TGTATTATCCAAGTCATAAT+TGG | + | chr5.2:50972385-50972404 | MS.gene73951:CDS | 25.0% |
!! | AGAGTTTTTCATGAAAACAA+TGG | - | chr5.2:50972226-50972245 | None:intergenic | 25.0% |
!! | CTTTTTATCATAGGTTAACT+GGG | + | chr5.2:50973164-50973183 | MS.gene73951:intron | 25.0% |
!! | TCTTTTTATCATAGGTTAAC+TGG | + | chr5.2:50973163-50973182 | MS.gene73951:intron | 25.0% |
!!! | ATTGAATGTAGAATTTGTTG+GGG | - | chr5.2:50973330-50973349 | None:intergenic | 25.0% |
AAATCAGACCAATTATGACT+TGG | - | chr5.2:50972396-50972415 | None:intergenic | 30.0% | |
ACGTATTGTAGTCATAGATA+AGG | + | chr5.2:50972915-50972934 | MS.gene73951:intron | 30.0% | |
AGAATGAAGATCATGAAGAA+AGG | - | chr5.2:50971797-50971816 | None:intergenic | 30.0% | |
AGTTTAAGAACCTTCTAAGT+AGG | + | chr5.2:50973035-50973054 | MS.gene73951:intron | 30.0% | |
ATTAAGTTCGAGACTTAATG+TGG | - | chr5.2:50973006-50973025 | None:intergenic | 30.0% | |
CAAATTCTACATTCAATTGC+AGG | + | chr5.2:50973333-50973352 | MS.gene73951:CDS | 30.0% | |
CGTATTGTAGTCATAGATAA+GGG | + | chr5.2:50972916-50972935 | MS.gene73951:intron | 30.0% | |
GTATTGTAGTCATAGATAAG+GGG | + | chr5.2:50972917-50972936 | MS.gene73951:intron | 30.0% | |
TATGTAATTGCAAAACCACT+CGG | - | chr5.2:50972806-50972825 | None:intergenic | 30.0% | |
! | ATGAAGATTGTTTGGAATTC+TGG | + | chr5.2:50972447-50972466 | MS.gene73951:CDS | 30.0% |
! | GGCATTGGATTGTTAAAATT+TGG | - | chr5.2:50972063-50972082 | None:intergenic | 30.0% |
! | GTCGTTTACTATTTTCCAAA+AGG | + | chr5.2:50971727-50971746 | MS.gene73951:CDS | 30.0% |
! | TGAAGATTGTTTGGAATTCT+GGG | + | chr5.2:50972448-50972467 | MS.gene73951:CDS | 30.0% |
! | TGTTTTCATGAAAAACTCTG+CGG | + | chr5.2:50972227-50972246 | MS.gene73951:CDS | 30.0% |
!! | TCATAATTGGTCTGATTTTG+TGG | + | chr5.2:50972398-50972417 | MS.gene73951:CDS | 30.0% |
!! | TTGAATGTAGAATTTGTTGG+GGG | - | chr5.2:50973329-50973348 | None:intergenic | 30.0% |
AAGATTGTTTCCATCTTCGT+CGG | - | chr5.2:50971959-50971978 | None:intergenic | 35.0% | |
ACCTGAAGAATGTTCCAATT+AGG | - | chr5.2:50972552-50972571 | None:intergenic | 35.0% | |
ATCTATGACTACAATACGTC+CGG | - | chr5.2:50972914-50972933 | None:intergenic | 35.0% | |
ATGACGCTATGAAGATTGTT+TGG | + | chr5.2:50972439-50972458 | MS.gene73951:CDS | 35.0% | |
ATTAAACGAAGAAATGGAGC+TGG | + | chr5.2:50972865-50972884 | MS.gene73951:intron | 35.0% | |
CATGAAAACAATGGAATCGT+CGG | - | chr5.2:50972217-50972236 | None:intergenic | 35.0% | |
CCTGAAGAATGTTCCAATTA+GGG | - | chr5.2:50972551-50972570 | None:intergenic | 35.0% | |
CTGAAGAATGTTCCAATTAG+GGG | - | chr5.2:50972550-50972569 | None:intergenic | 35.0% | |
TCATAACAAAGCACAATGTC+CGG | - | chr5.2:50972967-50972986 | None:intergenic | 35.0% | |
TTATCATAGGTTAACTGGGA+TGG | + | chr5.2:50973168-50973187 | MS.gene73951:intron | 35.0% | |
! | CTATTTTCCAAAAGGTCACT+TGG | + | chr5.2:50971735-50971754 | MS.gene73951:CDS | 35.0% |
! | GTTTTCATGAAAAACTCTGC+GGG | + | chr5.2:50972228-50972247 | MS.gene73951:CDS | 35.0% |
!! | TAATTGGTCTGATTTTGTGG+TGG | + | chr5.2:50972401-50972420 | MS.gene73951:CDS | 35.0% |
!! | TGAATGTAGAATTTGTTGGG+GGG | - | chr5.2:50973328-50973347 | None:intergenic | 35.0% |
AGATTGTTTCCATCTTCGTC+GGG | - | chr5.2:50971958-50971977 | None:intergenic | 40.0% | |
AGTTATCTGTTGGAATACGC+CGG | + | chr5.2:50972253-50972272 | MS.gene73951:CDS | 40.0% | |
ATAAAGAAGGAGGGTGAAGA+GGG | + | chr5.2:50972279-50972298 | MS.gene73951:CDS | 40.0% | |
ATCCAAACCTAGTCAATCCT+TGG | + | chr5.2:50973208-50973227 | MS.gene73951:CDS | 40.0% | |
CAATTAGGGGAATTCGAAGA+AGG | - | chr5.2:50972537-50972556 | None:intergenic | 40.0% | |
CCCTAATTGGAACATTCTTC+AGG | + | chr5.2:50972548-50972567 | MS.gene73951:CDS | 40.0% | |
CGAAGAAGGATTAGACACAT+TGG | - | chr5.2:50972523-50972542 | None:intergenic | 40.0% | |
CTTCTTCGAATTCCCCTAAT+TGG | + | chr5.2:50972535-50972554 | MS.gene73951:CDS | 40.0% | |
GTTCGAGACTTAATGTGGTA+TGG | - | chr5.2:50973001-50973020 | None:intergenic | 40.0% | |
TAAACGACTGAGTTCAGCTT+TGG | - | chr5.2:50971715-50971734 | None:intergenic | 40.0% | |
TATAGTTGAACCTCCAGACT+TGG | - | chr5.2:50972119-50972138 | None:intergenic | 40.0% | |
TATGTATAGCTTTCTCCGAG+TGG | + | chr5.2:50972788-50972807 | MS.gene73951:intron | 40.0% | |
TCTATCAGGATTCTTGCGAA+AGG | - | chr5.2:50972142-50972161 | None:intergenic | 40.0% | |
TTGAAGAATGATCAGTCCCT+GGG | + | chr5.2:50972489-50972508 | MS.gene73951:CDS | 40.0% | |
TTGACTAGGTTTGGATTCTG+CGG | - | chr5.2:50973204-50973223 | None:intergenic | 40.0% | |
TTGTGTAAGAGTCTTGACGT+AGG | - | chr5.2:50971986-50972005 | None:intergenic | 40.0% | |
TTTGAAGAATGATCAGTCCC+TGG | + | chr5.2:50972488-50972507 | MS.gene73951:CDS | 40.0% | |
TTTGGATTCTGCGGGATATT+AGG | - | chr5.2:50973195-50973214 | None:intergenic | 40.0% | |
! | AAGTCTAGGAGCTTTTGTTG+AGG | - | chr5.2:50973292-50973311 | None:intergenic | 40.0% |
! | CTTTTTCTCACCGATGTTCA+AGG | + | chr5.2:50972093-50972112 | MS.gene73951:CDS | 40.0% |
AAAATTTGGCAGACATGCGC+CGG | + | chr5.2:50971673-50971692 | MS.gene73951:CDS | 45.0% | |
AAACCTAGTCAATCCTTGGC+AGG | + | chr5.2:50973212-50973231 | MS.gene73951:CDS | 45.0% | |
AATACGCCGGCACATAAAGA+AGG | + | chr5.2:50972266-50972285 | MS.gene73951:CDS | 45.0% | |
ACACATTGGAGATTGTTCCC+AGG | - | chr5.2:50972509-50972528 | None:intergenic | 45.0% | |
ACACCACCGTCAATTGTTAC+CGG | - | chr5.2:50971904-50971923 | None:intergenic | 45.0% | |
CACATTGGAGATTGTTCCCA+GGG | - | chr5.2:50972508-50972527 | None:intergenic | 45.0% | |
CATAAAGAAGGAGGGTGAAG+AGG | + | chr5.2:50972278-50972297 | MS.gene73951:CDS | 45.0% | |
CTATCTCTGCATCATCTCAG+CGG | + | chr5.2:50971822-50971841 | MS.gene73951:CDS | 45.0% | |
CTCACTCCGGTAACAATTGA+CGG | + | chr5.2:50971895-50971914 | MS.gene73951:CDS | 45.0% | |
GAGTTTGGCGACAACTTCAT+CGG | - | chr5.2:50971872-50971891 | None:intergenic | 45.0% | |
GATAGACACCGTTTCTCTAC+TGG | + | chr5.2:50972156-50972175 | MS.gene73951:CDS | 45.0% | |
GATGAACTCTCAGCAAGTCT+AGG | - | chr5.2:50973306-50973325 | None:intergenic | 45.0% | |
GCGTTGTCGAAGGCAAAATT+TGG | + | chr5.2:50971659-50971678 | MS.gene73951:CDS | 45.0% | |
GTAGAGAAACGGTGTCTATC+AGG | - | chr5.2:50972156-50972175 | None:intergenic | 45.0% | |
GTGAGAAAAAGCTCCTGAGA+CGG | - | chr5.2:50972084-50972103 | None:intergenic | 45.0% | |
TAACAATCCAATGCCGTCTC+AGG | + | chr5.2:50972068-50972087 | MS.gene73951:CDS | 45.0% | |
TCACTTGAAGCCAGTTAGTC+CGG | + | chr5.2:50972945-50972964 | MS.gene73951:intron | 45.0% | |
TGAAGAAAGGAGACTGTCTG+AGG | - | chr5.2:50971784-50971803 | None:intergenic | 45.0% | |
TGACTAGGTTTGGATTCTGC+GGG | - | chr5.2:50973203-50973222 | None:intergenic | 45.0% | |
TGCCAAGGATTGACTAGGTT+TGG | - | chr5.2:50973213-50973232 | None:intergenic | 45.0% | |
TGTTGAGGTGAGATTGACAG+TGG | - | chr5.2:50973277-50973296 | None:intergenic | 45.0% | |
TTGACCGCAAACAGTTAGTC+CGG | + | chr5.2:50972892-50972911 | MS.gene73951:intron | 45.0% | |
TTGGAAACTTCAACCTGCCA+AGG | - | chr5.2:50973228-50973247 | None:intergenic | 45.0% | |
! | GCATGTTCCAAGTGACCTTT+TGG | - | chr5.2:50971745-50971764 | None:intergenic | 45.0% |
!!! | TACTGGCTGGACTGGTTTTA+GGG | + | chr5.2:50972173-50972192 | MS.gene73951:CDS | 45.0% |
AAAAGCTCCTGAGACGGCAT+TGG | - | chr5.2:50972078-50972097 | None:intergenic | 50.0% | |
ACGTCCGGACTAACTGTTTG+CGG | - | chr5.2:50972899-50972918 | None:intergenic | 50.0% | |
ACTCCGGTAACAATTGACGG+TGG | + | chr5.2:50971898-50971917 | MS.gene73951:CDS | 50.0% | |
AGCACAATGTCCGGACTAAC+TGG | - | chr5.2:50972958-50972977 | None:intergenic | 50.0% | |
ATGTTCAAGGCCAAGTCTGG+AGG | + | chr5.2:50972106-50972125 | MS.gene73951:CDS | 50.0% | |
CAACCTGCCAAGGATTGACT+AGG | - | chr5.2:50973218-50973237 | None:intergenic | 50.0% | |
CACCCTCCTTCTTTATGTGC+CGG | - | chr5.2:50972275-50972294 | None:intergenic | 50.0% | |
CAGTCCAGCCAGTAGAGAAA+CGG | - | chr5.2:50972167-50972186 | None:intergenic | 50.0% | |
CATTCAATTGCAGGGTCGAG+TGG | + | chr5.2:50973342-50973361 | MS.gene73951:CDS | 50.0% | |
CGCTGAGATGATGCAGAGAT+AGG | - | chr5.2:50971824-50971843 | None:intergenic | 50.0% | |
CGTCAATTGTTACCGGAGTG+AGG | - | chr5.2:50971897-50971916 | None:intergenic | 50.0% | |
CTCAGCGGTTGATCTTCTTG+CGG | + | chr5.2:50971837-50971856 | MS.gene73951:CDS | 50.0% | |
GAGGGAGAAGTTAACCGAGT+CGG | + | chr5.2:50972311-50972330 | MS.gene73951:CDS | 50.0% | |
TACCGGAGTGAGGATGAGTT+TGG | - | chr5.2:50971887-50971906 | None:intergenic | 50.0% | |
TCTGCGGGAGAGTTATCTGT+TGG | + | chr5.2:50972243-50972262 | MS.gene73951:CDS | 50.0% | |
TGAGGTGAGATTGACAGTGG+AGG | - | chr5.2:50973274-50973293 | None:intergenic | 50.0% | |
TTTGGAAGCTGCGGAATTGG+CGG | + | chr5.2:50972338-50972357 | MS.gene73951:CDS | 50.0% | |
! | AAGGAGACTGTCTGAGGTAG+TGG | - | chr5.2:50971778-50971797 | None:intergenic | 50.0% |
! | AGGAGACTGTCTGAGGTAGT+GGG | - | chr5.2:50971777-50971796 | None:intergenic | 50.0% |
! | AGTCGAAGGTGCAGGTATGT+TGG | - | chr5.2:50973247-50973266 | None:intergenic | 50.0% |
! | ATTTTGCCTTCGACAACGCG+TGG | - | chr5.2:50971658-50971677 | None:intergenic | 50.0% |
!! | AGCTTTGGAATCTTGACGCC+GGG | - | chr5.2:50971700-50971719 | None:intergenic | 50.0% |
!! | CAGCTTTGGAATCTTGACGC+CGG | - | chr5.2:50971701-50971720 | None:intergenic | 50.0% |
!! | CCAGACTTGGCCTTGAACAT+CGG | - | chr5.2:50972106-50972125 | None:intergenic | 50.0% |
!!! | CTACTGGCTGGACTGGTTTT+AGG | + | chr5.2:50972172-50972191 | MS.gene73951:CDS | 50.0% |
!!! | GGTTTTGGAAGCTGCGGAAT+TGG | + | chr5.2:50972335-50972354 | MS.gene73951:CDS | 50.0% |
AAGAAGGAGGGTGAAGAGGG+AGG | + | chr5.2:50972282-50972301 | MS.gene73951:CDS | 55.0% | |
ACAGTGGAGGAGGAAGTCGA+AGG | - | chr5.2:50973261-50973280 | None:intergenic | 55.0% | |
ACGCCGGCACATAAAGAAGG+AGG | + | chr5.2:50972269-50972288 | MS.gene73951:CDS | 55.0% | |
CCGATGTTCAAGGCCAAGTC+TGG | + | chr5.2:50972103-50972122 | MS.gene73951:CDS | 55.0% | |
CGCCAAACTCATCCTCACTC+CGG | + | chr5.2:50971882-50971901 | MS.gene73951:CDS | 55.0% | |
CGCCGGCACATAAAGAAGGA+GGG | + | chr5.2:50972270-50972289 | MS.gene73951:CDS | 55.0% | |
GACACCGTTTCTCTACTGGC+TGG | + | chr5.2:50972160-50972179 | MS.gene73951:CDS | 55.0% | |
GCGACAACTTCATCGGTGTG+AGG | - | chr5.2:50971865-50971884 | None:intergenic | 55.0% | |
GGAGAAGTTAACCGAGTCGG+CGG | + | chr5.2:50972314-50972333 | MS.gene73951:CDS | 55.0% | |
GGTGAGATTGACAGTGGAGG+AGG | - | chr5.2:50973271-50973290 | None:intergenic | 55.0% | |
TGAAGAGGGAGGCTGGAAGA+GGG | + | chr5.2:50972293-50972312 | MS.gene73951:CDS | 55.0% | |
TTGTACCTCGTGAATGCGCG+CGG | + | chr5.2:50972028-50972047 | MS.gene73951:CDS | 55.0% | |
! | AGCTTCCAAAACCGCCGACT+CGG | - | chr5.2:50972328-50972347 | None:intergenic | 55.0% |
! | CGTTTCTCTACTGGCTGGAC+TGG | + | chr5.2:50972165-50972184 | MS.gene73951:CDS | 55.0% |
! | GAGGAGCTGGTTCTTGGACT+TGG | - | chr5.2:50971927-50971946 | None:intergenic | 55.0% |
! | GGAGACTGTCTGAGGTAGTG+GGG | - | chr5.2:50971776-50971795 | None:intergenic | 55.0% |
! | GTTAACCGAGTCGGCGGTTT+TGG | + | chr5.2:50972320-50972339 | MS.gene73951:CDS | 55.0% |
!! | ACTGTCTGAGGTAGTGGGGA+AGG | - | chr5.2:50971772-50971791 | None:intergenic | 55.0% |
!! | GCTTTGGAATCTTGACGCCG+GGG | - | chr5.2:50971699-50971718 | None:intergenic | 55.0% |
ATCAACCGCGCGCATTCACG+AGG | - | chr5.2:50972036-50972055 | None:intergenic | 60.0% | |
CCAAGAACCAGCTCCTCCTG+TGG | + | chr5.2:50971930-50971949 | MS.gene73951:CDS | 60.0% | |
CCATCTTCGTCGGGAACCAC+AGG | - | chr5.2:50971949-50971968 | None:intergenic | 60.0% | |
CCTGTGGTTCCCGACGAAGA+TGG | + | chr5.2:50971946-50971965 | MS.gene73951:CDS | 60.0% | |
GTGAAGAGGGAGGCTGGAAG+AGG | + | chr5.2:50972292-50972311 | MS.gene73951:CDS | 60.0% | |
TCTTCGTCGGGAACCACAGG+AGG | - | chr5.2:50971946-50971965 | None:intergenic | 60.0% | |
! | CCACAGGAGGAGCTGGTTCT+TGG | - | chr5.2:50971933-50971952 | None:intergenic | 60.0% |
! | GAGGAGGAAGTCGAAGGTGC+AGG | - | chr5.2:50973255-50973274 | None:intergenic | 60.0% |
!!! | GTCGGCGGTTTTGGAAGCTG+CGG | + | chr5.2:50972329-50972348 | MS.gene73951:CDS | 60.0% |
AGGAGGGTGAAGAGGGAGGC+TGG | + | chr5.2:50972286-50972305 | MS.gene73951:CDS | 65.0% | |
CCTCAGCCACGCGTTGTCGA+AGG | + | chr5.2:50971649-50971668 | MS.gene73951:CDS | 65.0% | |
CCTTCGACAACGCGTGGCTG+AGG | - | chr5.2:50971652-50971671 | None:intergenic | 65.0% | |
TCGACAACGCGTGGCTGAGG+CGG | - | chr5.2:50971649-50971668 | None:intergenic | 65.0% | |
TCGGGAACCACAGGAGGAGC+TGG | - | chr5.2:50971940-50971959 | None:intergenic | 65.0% | |
TGGAATCTTGACGCCGGGGC+CGG | - | chr5.2:50971695-50971714 | None:intergenic | 65.0% | |
! | TGGCAGACATGCGCCGGCCC+CGG | + | chr5.2:50971679-50971698 | MS.gene73951:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 50971637 | 50973383 | 50971637 | ID=MS.gene73951 |
chr5.2 | mRNA | 50971637 | 50973383 | 50971637 | ID=MS.gene73951.t1;Parent=MS.gene73951 |
chr5.2 | exon | 50971637 | 50972569 | 50971637 | ID=MS.gene73951.t1.exon1;Parent=MS.gene73951.t1 |
chr5.2 | CDS | 50971637 | 50972569 | 50971637 | ID=cds.MS.gene73951.t1;Parent=MS.gene73951.t1 |
chr5.2 | exon | 50973177 | 50973383 | 50973177 | ID=MS.gene73951.t1.exon2;Parent=MS.gene73951.t1 |
chr5.2 | CDS | 50973177 | 50973383 | 50973177 | ID=cds.MS.gene73951.t1;Parent=MS.gene73951.t1 |
Gene Sequence |
Protein sequence |