AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73952

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73952.t1 MTR_5g061890 90.842 404 29 2 1 401 1 399 0.0 747
MS.gene73952.t1 MTR_5g060780 89.851 404 33 2 1 401 1 399 0.0 739
MS.gene73952.t1 MTR_5g460920 89.851 404 33 2 1 401 1 399 0.0 737
MS.gene73952.t1 MTR_5g060630 54.676 417 136 8 1 367 1 414 6.48e-132 389
MS.gene73952.t1 MTR_5g460740 54.676 417 136 8 1 367 1 414 6.48e-132 389
MS.gene73952.t1 MTR_5g061220 54.177 395 140 9 1 364 8 392 1.23e-129 383
MS.gene73952.t1 MTR_1g058210 53.806 381 140 10 1 364 1 362 1.29e-120 358
MS.gene73952.t1 MTR_2g024430 48.878 401 163 18 1 382 9 386 2.28e-103 315
MS.gene73952.t1 MTR_5g040880 49.263 339 147 9 8 335 7 331 7.34e-95 294
MS.gene73952.t1 MTR_5g040740 51.205 332 127 11 1 315 1 314 6.14e-89 275
MS.gene73952.t1 MTR_2g006270 44.792 384 181 14 6 374 7 374 1.58e-87 273
MS.gene73952.t1 MTR_5g082140 45.954 346 158 10 6 336 6 337 5.82e-87 271
MS.gene73952.t1 MTR_2g006380 42.257 381 188 14 6 374 14 374 2.18e-83 262
MS.gene73952.t1 MTR_5g060770 52.443 307 90 7 61 365 7 259 6.11e-83 258
MS.gene73952.t1 MTR_5g460910 41.582 392 118 12 52 401 14 336 5.43e-65 211
MS.gene73952.t1 MTR_5g062970 56.633 196 69 7 12 195 38 229 1.31e-61 199
MS.gene73952.t1 MTR_3g073420 34.921 378 184 10 9 336 16 381 5.24e-61 207
MS.gene73952.t1 MTR_1g064430 36.253 411 191 14 9 360 24 422 2.24e-57 199
MS.gene73952.t1 MTR_1g064430 36.253 411 191 14 9 360 37 435 3.00e-57 199
MS.gene73952.t1 MTR_1g094960 35.539 408 191 17 9 361 16 406 4.69e-57 197
MS.gene73952.t1 MTR_2g094570 34.828 379 186 12 9 336 8 376 5.93e-55 192
MS.gene73952.t1 MTR_2g094570 34.828 379 186 12 9 336 8 376 1.10e-54 192
MS.gene73952.t1 MTR_2g094570 34.828 379 186 12 9 336 64 432 1.40e-54 192
MS.gene73952.t1 MTR_4g058930 35.641 390 183 13 9 340 9 388 3.57e-53 187
MS.gene73952.t1 MTR_4g058930 35.641 390 183 13 9 340 9 388 5.03e-53 187
MS.gene73952.t1 MTR_7g101280 30.521 403 193 13 9 341 28 413 6.29e-48 173
MS.gene73952.t1 MTR_0041s0110 30.521 403 193 13 9 341 28 413 6.29e-48 173
MS.gene73952.t1 MTR_7g101275 32.381 315 175 11 22 314 2 300 7.72e-40 147
MS.gene73952.t1 MTR_5g062960 63.393 112 40 1 227 338 1 111 1.75e-39 140
MS.gene73952.t1 MTR_2g014770 29.639 388 229 15 4 364 43 413 6.61e-39 147
MS.gene73952.t1 MTR_2g014770 29.639 388 229 15 4 364 43 413 1.05e-38 147
MS.gene73952.t1 MTR_0041s0120 31.481 324 178 11 22 314 2 312 1.97e-37 140
MS.gene73952.t1 MTR_4g021580 28.412 359 237 8 12 358 19 369 1.20e-36 141
MS.gene73952.t1 MTR_2g005240 28.238 386 232 10 12 371 23 389 1.60e-36 141
MS.gene73952.t1 MTR_4g021580 28.412 359 237 8 12 358 19 369 1.90e-36 141
MS.gene73952.t1 MTR_7g062540 28.453 362 236 10 12 359 14 366 1.19e-35 139
MS.gene73952.t1 MTR_8g100050 28.448 348 210 9 12 335 59 391 4.53e-35 137
MS.gene73952.t1 MTR_8g100050 28.448 348 210 9 12 335 59 391 1.18e-34 136
MS.gene73952.t1 MTR_2g018690 29.651 344 219 10 9 335 20 357 1.88e-34 135
MS.gene73952.t1 MTR_4g088210 28.756 386 228 15 12 369 38 404 6.81e-34 134
MS.gene73952.t1 MTR_4g088210 28.756 386 228 15 12 369 38 404 8.35e-34 133
MS.gene73952.t1 MTR_8g027440 28.750 400 259 12 12 398 29 415 1.10e-33 133
MS.gene73952.t1 MTR_4g124900 28.406 345 220 10 9 335 20 355 8.14e-32 128
MS.gene73952.t1 MTR_4g124900 28.448 348 216 10 9 335 20 355 8.21e-32 128
MS.gene73952.t1 MTR_5g076270 29.326 341 218 10 12 335 24 358 2.17e-31 127
MS.gene73952.t1 MTR_2g043250 29.070 344 219 11 9 335 20 355 3.03e-31 126
MS.gene73952.t1 MTR_8g079492 28.249 354 210 12 9 335 20 356 3.31e-31 126
MS.gene73952.t1 MTR_8g079492 28.249 354 210 12 9 335 20 356 3.47e-31 126
MS.gene73952.t1 MTR_1g024025 29.912 341 215 11 12 335 43 376 1.01e-30 125
MS.gene73952.t1 MTR_3g064050 29.032 341 219 10 12 335 26 360 2.59e-30 123
MS.gene73952.t1 MTR_2g093740 29.219 397 235 16 12 376 56 438 1.12e-28 118
MS.gene73952.t1 MTR_2g093740 29.219 397 235 16 12 376 56 438 1.14e-28 118
MS.gene73952.t1 MTR_2g093740 29.219 397 235 16 12 376 56 438 1.65e-28 118
MS.gene73952.t1 MTR_4g060460 28.608 395 239 15 12 376 54 435 1.63e-27 115
MS.gene73952.t1 MTR_8g101360 28.409 352 213 11 9 335 28 365 5.65e-27 114
MS.gene73952.t1 MTR_4g060460 28.205 390 237 15 12 371 54 430 3.80e-26 111
MS.gene73952.t1 MTR_2g093740 28.293 410 235 17 12 376 56 451 1.07e-25 109
MS.gene73952.t1 MTR_2g093740 28.293 410 235 17 12 376 56 451 1.28e-25 109
MS.gene73952.t1 MTR_2g093740 28.293 410 235 17 12 376 56 451 1.46e-25 109
MS.gene73952.t1 MTR_8g079492 26.829 287 176 9 70 335 1 274 1.26e-19 91.7
MS.gene73952.t1 MTR_8g446900 26.846 298 174 12 61 335 12 288 5.23e-18 85.5
MS.gene73952.t1 MTR_2g093740 28.470 281 175 11 112 376 38 308 9.70e-15 76.3
MS.gene73952.t1 MTR_2g093740 28.470 281 175 11 112 376 38 308 1.12e-14 76.3
MS.gene73952.t1 MTR_5g046120 35.897 117 69 3 50 160 12 128 5.70e-14 68.9
MS.gene73952.t1 MTR_2g093740 27.211 294 175 12 112 376 38 321 7.05e-12 67.8
MS.gene73952.t1 MTR_2g093740 27.211 294 175 12 112 376 38 321 7.33e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73952.t1 AT1G77850 34.759 374 189 13 8 336 15 378 1.89e-61 208
MS.gene73952.t1 AT1G77850 34.759 374 189 13 8 336 15 378 2.11e-61 208
MS.gene73952.t1 AT4G30080 35.550 391 191 14 9 347 16 397 1.54e-52 186
MS.gene73952.t1 AT2G28350 33.249 394 188 14 9 340 7 387 3.27e-50 179
MS.gene73952.t1 AT2G28350 33.249 394 188 14 9 340 7 387 4.10e-50 179
MS.gene73952.t1 AT2G46530 30.055 366 230 8 12 361 21 376 1.53e-42 157
MS.gene73952.t1 AT2G46530 30.055 366 230 8 12 361 42 397 1.70e-42 157
MS.gene73952.t1 AT3G61830 30.145 345 219 8 12 342 25 361 2.09e-41 154
MS.gene73952.t1 AT1G34390 30.576 399 233 14 12 385 27 406 6.43e-39 147
MS.gene73952.t1 AT1G35520 31.463 410 219 17 12 386 27 409 9.02e-39 147
MS.gene73952.t1 AT1G59750 31.688 385 229 14 12 377 22 391 2.92e-38 146
MS.gene73952.t1 AT1G59750 31.688 385 229 14 12 377 22 391 2.92e-38 146
MS.gene73952.t1 AT1G59750 31.854 383 227 14 12 375 22 389 5.24e-38 145
MS.gene73952.t1 AT1G59750 31.694 366 219 13 12 358 22 375 1.48e-37 144
MS.gene73952.t1 AT1G34410 30.467 407 225 17 12 385 27 408 7.17e-37 142
MS.gene73952.t1 AT1G35540 31.311 412 215 21 12 385 27 408 7.08e-36 139
MS.gene73952.t1 AT1G34310 30.729 384 213 15 9 364 24 382 1.59e-35 137
MS.gene73952.t1 AT5G62000 28.818 347 210 10 12 335 61 393 5.91e-35 137
MS.gene73952.t1 AT5G62000 28.818 347 210 10 12 335 61 393 5.91e-35 137
MS.gene73952.t1 AT5G62000 28.818 347 210 10 12 335 61 393 5.91e-35 137
MS.gene73952.t1 AT5G62000 28.818 347 210 10 12 335 61 393 5.91e-35 137
MS.gene73952.t1 AT5G62000 28.818 347 210 10 12 335 61 393 6.51e-35 137
MS.gene73952.t1 AT4G23980 28.530 347 223 9 12 340 12 351 2.97e-34 134
MS.gene73952.t1 AT4G23980 28.530 347 223 9 12 340 12 351 3.71e-34 134
MS.gene73952.t1 AT1G35240 30.579 363 196 15 12 343 27 364 6.03e-34 133
MS.gene73952.t1 AT5G37020 30.409 342 213 12 12 335 22 356 2.45e-33 132
MS.gene73952.t1 AT1G30330 29.412 340 219 9 12 335 25 359 2.66e-33 132
MS.gene73952.t1 AT1G30330 29.412 340 219 9 12 335 25 359 2.66e-33 132
MS.gene73952.t1 AT1G30330 29.412 340 219 9 12 335 23 357 2.73e-33 132
MS.gene73952.t1 AT5G37020 30.409 342 213 12 12 335 22 356 2.75e-33 132
MS.gene73952.t1 AT1G34170 30.000 360 211 14 12 349 25 365 3.55e-32 127
MS.gene73952.t1 AT2G33860 29.609 358 215 12 12 347 54 396 8.69e-32 127
MS.gene73952.t1 AT1G19220 28.161 348 217 10 9 335 20 355 2.33e-30 124
MS.gene73952.t1 AT5G20730 28.736 348 216 11 9 335 21 357 8.35e-30 122
MS.gene73952.t1 AT5G20730 28.736 348 216 11 9 335 21 357 9.04e-30 122
MS.gene73952.t1 AT1G19850 29.971 347 220 10 7 336 38 378 1.04e-29 122
MS.gene73952.t1 AT1G19850 29.971 347 220 10 7 336 49 389 1.07e-29 122
MS.gene73952.t1 AT5G20730 28.242 347 218 10 9 335 21 356 2.70e-29 120
MS.gene73952.t1 AT3G61830 29.932 294 189 6 59 342 24 310 5.17e-29 119
MS.gene73952.t1 AT5G60450 28.775 351 213 13 12 335 41 381 4.83e-27 114
MS.gene73952.t1 AT5G60450 28.775 351 213 13 12 335 65 405 5.27e-27 114
MS.gene73952.t1 AT1G43950 32.353 204 118 6 12 203 27 222 3.75e-26 105
MS.gene73952.t1 AT1G34170 28.011 357 196 13 12 349 25 339 5.92e-26 109
MS.gene73952.t1 AT1G34170 28.011 357 196 13 12 349 25 339 1.11e-25 109
MS.gene73952.t1 AT2G46530 29.119 261 168 6 111 361 36 289 5.36e-23 101
MS.gene73952.t1 AT2G33860 29.032 248 154 9 112 347 2 239 1.99e-18 87.0
MS.gene73952.t1 AT5G37020 29.536 237 148 9 112 335 31 261 1.34e-16 82.4

Find 103 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGCATATCTGCCATATTT+TGG 0.143600 5.2:-50993943 None:intergenic
ACCAAGTGAGATATCTTTAT+TGG 0.193551 5.2:+50995521 MS.gene73952:CDS
AACTGATGAGATTAAGGTTT+TGG 0.252605 5.2:+50994571 MS.gene73952:CDS
TAAACTTTAGAGTGAATCTT+TGG 0.260426 5.2:-50993984 None:intergenic
TGTCTCCAACATCGTCTTCT+TGG 0.261503 5.2:-50994211 None:intergenic
ATTCTTCTAATGTCCCTAAT+TGG 0.268826 5.2:+50994819 MS.gene73952:CDS
GATGACAATTTCTCAGCTTA+AGG 0.289847 5.2:+50994772 MS.gene73952:CDS
GAATTTAACTGATGAGATTA+AGG 0.298587 5.2:+50994565 MS.gene73952:CDS
CGACCCTGCCAAGGTTTGTT+GGG 0.299743 5.2:-50995405 None:intergenic
TCACTTGGTGCTTGGCTCAT+TGG 0.299947 5.2:-50995507 None:intergenic
TGCCAAGGATTGACTAGGTT+TGG 0.313165 5.2:-50995287 None:intergenic
ACCTCAAGCATGCGCCAATT+AGG 0.318991 5.2:-50994833 None:intergenic
TTGGCATATCTGTGCAATAT+TGG 0.331366 5.2:+50995540 MS.gene73952:CDS
ATGAAGATTGGTTGGAAATC+TGG 0.337904 5.2:+50994701 MS.gene73952:CDS
ATTGGTATGCAGTCACAATT+AGG 0.352707 5.2:+50995558 MS.gene73952:CDS
CTACTTCCCACGAGGTCATC+TGG 0.355762 5.2:+50994007 MS.gene73952:CDS
TCGACCCTGCCAAGGTTTGT+TGG 0.360193 5.2:-50995406 None:intergenic
GAACCATTCTTGATCGTTAC+CGG 0.364840 5.2:+50994063 MS.gene73952:CDS
CCTCAAGCATGCGCCAATTA+GGG 0.367711 5.2:-50994832 None:intergenic
ATCTTTGGAATCTTGACGTC+GGG 0.375178 5.2:-50993969 None:intergenic
AGATTTCCAACCAATCTTCA+TGG 0.383662 5.2:-50994699 None:intergenic
ATGACAATTTCTCAGCTTAA+GGG 0.392754 5.2:+50994773 MS.gene73952:CDS
CTCGTGTGGAACCCAAAATA+TGG 0.402726 5.2:+50993931 MS.gene73952:CDS
CGCTTCATCTGTAGTGAACT+TGG 0.424216 5.2:-50994528 None:intergenic
CTTGGTCAGTTACGGGAGTC+AGG 0.426329 5.2:-50994163 None:intergenic
CGACCTTAAAAGCCGAGAAT+GGG 0.441124 5.2:+50994361 MS.gene73952:CDS
TGGAATCTTGACGTCGGGGC+CGG 0.443805 5.2:-50993964 None:intergenic
GTGTATTATCCGACAGCTAT+TGG 0.461034 5.2:+50994635 MS.gene73952:CDS
TACGGGAGTCAGGAGCAGTT+TGG 0.469490 5.2:-50994153 None:intergenic
GTTGACGATGCCATGAAGAT+TGG 0.477758 5.2:+50994689 MS.gene73952:CDS
GACTCGTCTAAATCAAGCTT+GGG 0.479574 5.2:-50994320 None:intergenic
TCTTCTTGGCCAGGAACTAC+AGG 0.484793 5.2:-50994197 None:intergenic
GATGAAAACAACAGAATCGT+TGG 0.490573 5.2:-50994462 None:intergenic
GAAGATTCATATTTCTTCAA+AGG 0.492904 5.2:-50994740 None:intergenic
ATGGTTCTTGTGGCAGCAGT+AGG 0.493323 5.2:-50994047 None:intergenic
TTATCATAGGTTAACTGGGA+TGG 0.493859 5.2:+50995245 MS.gene73952:intron
CCGACCTTAAAAGCCGAGAA+TGG 0.494002 5.2:+50994360 MS.gene73952:CDS
GACCCTGCCAAGGTTTGTTG+GGG 0.496074 5.2:-50995404 None:intergenic
GGCGGAGTTGACGGTGGAGG+AGG 0.496620 5.2:-50995345 None:intergenic
TGAGGCGGAGTTGACGGTGG+AGG 0.507469 5.2:-50995348 None:intergenic
AGACTCGTCTAAATCAAGCT+TGG 0.507768 5.2:-50994321 None:intergenic
ATCCAAACCTAGTCAATCCT+TGG 0.508187 5.2:+50995285 MS.gene73952:CDS
CCAACATCGTCTTCTTGGCC+AGG 0.508432 5.2:-50994206 None:intergenic
CAACCTGCCAAGGATTGACT+AGG 0.513736 5.2:-50995292 None:intergenic
AAGATATCTCACTTGGTGCT+TGG 0.515083 5.2:-50995515 None:intergenic
TCATCCTCTGCCACCTCGTG+TGG 0.517268 5.2:+50993917 MS.gene73952:CDS
AATCTCAGTAGATTACATAC+TGG 0.519388 5.2:+50994404 MS.gene73952:CDS
CCCTAATTGGCGCATGCTTG+AGG 0.522896 5.2:+50994832 MS.gene73952:CDS
GGTTCCACACGAGGTGGCAG+AGG 0.527487 5.2:-50993921 None:intergenic
GAGACGATGCATGGAATGGA+TGG 0.527501 5.2:-50994086 None:intergenic
GGAAGAGACGATGCATGGAA+TGG 0.530637 5.2:-50994090 None:intergenic
TGGTTCTTGTGGCAGCAGTA+GGG 0.533159 5.2:-50994046 None:intergenic
TGACTAGGTTTGGATTCTGC+GGG 0.536979 5.2:-50995277 None:intergenic
GATGAACTCTCAGCAAGTCT+AGG 0.537540 5.2:-50995380 None:intergenic
GAGGAGGAAGTCGAAGGTGC+AGG 0.538875 5.2:-50995329 None:intergenic
AGATATCTGTCGGAATTCGC+AGG 0.543135 5.2:+50994501 MS.gene73952:CDS
ACTACAGATGAAGCGGATGA+AGG 0.543135 5.2:+50994536 MS.gene73952:CDS
CCCTGCCAAGGTTTGTTGGG+GGG 0.543970 5.2:-50995402 None:intergenic
TTTGGATGCAGTGGAATTGG+CGG 0.544683 5.2:+50994589 MS.gene73952:CDS
TTGTAAACTTCAACCTGCCA+AGG 0.544687 5.2:-50995302 None:intergenic
AAACCTAGTCAATCCTTGGC+AGG 0.546100 5.2:+50995289 MS.gene73952:CDS
ACGATGCCATGAAGATTGGT+TGG 0.558168 5.2:+50994693 MS.gene73952:CDS
GCCAATAAAGATATCTCACT+TGG 0.558384 5.2:-50995522 None:intergenic
TGGCCAGGAACTACAGGAGG+AGG 0.559570 5.2:-50994191 None:intergenic
GCCAGGAACTACAGGAGGAG+GGG 0.559651 5.2:-50994189 None:intergenic
ACCCTGCCAAGGTTTGTTGG+GGG 0.559662 5.2:-50995403 None:intergenic
TCAGTAGATTACATACTGGC+TGG 0.560711 5.2:+50994408 MS.gene73952:CDS
CGATGCATGGAATGGATGGC+CGG 0.561229 5.2:-50994082 None:intergenic
CCAGGAACTACAGGAGGAGG+GGG 0.566530 5.2:-50994188 None:intergenic
GGTTCTTGTGGCAGCAGTAG+GGG 0.568653 5.2:-50994045 None:intergenic
ATTATCCGACAGCTATTGGT+TGG 0.574808 5.2:+50994639 MS.gene73952:CDS
GGCCAGGAACTACAGGAGGA+GGG 0.580565 5.2:-50994190 None:intergenic
TTGACTAGGTTTGGATTCTG+CGG 0.581555 5.2:-50995278 None:intergenic
TGGCCGGTAACGATCAAGAA+TGG 0.583189 5.2:-50994066 None:intergenic
CAAGTTCACTACAGATGAAG+CGG 0.584809 5.2:+50994529 MS.gene73952:CDS
AAAATATGGCAGATATGCGC+CGG 0.589425 5.2:+50993945 MS.gene73952:CDS
CCTGGCCAAGAAGACGATGT+TGG 0.592933 5.2:+50994206 MS.gene73952:CDS
TGTGCAGGAAAGATATCTGT+CGG 0.598742 5.2:+50994491 MS.gene73952:CDS
TGACAATTTCTCAGCTTAAG+GGG 0.599563 5.2:+50994774 MS.gene73952:CDS
TAATCTACTGAGATTTGCAT+AGG 0.604127 5.2:-50994396 None:intergenic
TCAACGGAAGAGACGATGCA+TGG 0.604313 5.2:-50994095 None:intergenic
GCAAAGACCTCGTCGGTGTG+AGG 0.608714 5.2:-50994131 None:intergenic
CAAACCTTGGCAGGGTCGAG+TGG 0.615213 5.2:+50995410 MS.gene73952:CDS
GACCTTAAAAGCCGAGAATG+GGG 0.616896 5.2:+50994362 MS.gene73952:CDS
ACAGATGAAGCGGATGAAGG+AGG 0.630115 5.2:+50994539 MS.gene73952:CDS
AATCTTTGGAATCTTGACGT+CGG 0.630358 5.2:-50993970 None:intergenic
ACGATCAAGAATGGTTCTTG+TGG 0.631537 5.2:-50994057 None:intergenic
TCTTGAGGCGGAGTTGACGG+TGG 0.632846 5.2:-50995351 None:intergenic
TCACGCCAACCAATAGCTGT+CGG 0.635734 5.2:-50994644 None:intergenic
AGTACCACTCGACCCTGCCA+AGG 0.642496 5.2:-50995414 None:intergenic
TTGCGTGAGAGTCTTGACAT+AGG 0.647637 5.2:-50994243 None:intergenic
AGGATCAACAAAGAGATCAA+CGG 0.651533 5.2:-50994111 None:intergenic
ACCTTAAAAGCCGAGAATGG+GGG 0.652954 5.2:+50994363 MS.gene73952:CDS
TGTTGATCCTCACACCGACG+AGG 0.655379 5.2:+50994124 MS.gene73952:CDS
CAGTTTGGCAAAGACCTCGT+CGG 0.663811 5.2:-50994138 None:intergenic
AGGTGGCAGAGGATGAGACA+TGG 0.663852 5.2:-50993910 None:intergenic
TCTTTGGAATCTTGACGTCG+GGG 0.665271 5.2:-50993968 None:intergenic
TCTTGGCCAGGAACTACAGG+AGG 0.669601 5.2:-50994194 None:intergenic
ATCAAGTTAGAGCATTCGAT+AGG 0.670484 5.2:-50994293 None:intergenic
CATGTTCCAGATGACCTCGT+GGG 0.672658 5.2:-50994013 None:intergenic
GCATGTTCCAGATGACCTCG+TGG 0.672744 5.2:-50994014 None:intergenic
ACGGTGGAGGAGGAAGTCGA+AGG 0.704506 5.2:-50995335 None:intergenic
AAAGTTTACTACTTCCCACG+AGG 0.761653 5.2:+50993999 MS.gene73952:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTATCTTTTTATCAT+AGG + chr5.2:50995232-50995251 MS.gene73952:intron 15.0%
!! TCAATCAAATAATCTTATCA+TGG - chr5.2:50994901-50994920 None:intergenic 20.0%
! AAAAGTTTCTACTTAGCATT+AGG - chr5.2:50995143-50995162 None:intergenic 25.0%
! GAAGATTCATATTTCTTCAA+AGG - chr5.2:50994743-50994762 None:intergenic 25.0%
! GAATTTAACTGATGAGATTA+AGG + chr5.2:50994565-50994584 MS.gene73952:CDS 25.0%
! GTACATATGCTTTCTTAATT+TGG + chr5.2:50994854-50994873 MS.gene73952:intron 25.0%
!! CTTTTTATCATAGGTTAACT+GGG + chr5.2:50995241-50995260 MS.gene73952:intron 25.0%
!! TCTTTTTATCATAGGTTAAC+TGG + chr5.2:50995240-50995259 MS.gene73952:intron 25.0%
!!! CTATTTTTAGTGAATATCAC+TGG - chr5.2:50995075-50995094 None:intergenic 25.0%
!!! TAAACTTTAGAGTGAATCTT+TGG - chr5.2:50993987-50994006 None:intergenic 25.0%
AATCTCAGTAGATTACATAC+TGG + chr5.2:50994404-50994423 MS.gene73952:CDS 30.0%
ACCAAGTGAGATATCTTTAT+TGG + chr5.2:50995521-50995540 MS.gene73952:CDS 30.0%
ATGACAATTTCTCAGCTTAA+GGG + chr5.2:50994773-50994792 MS.gene73952:CDS 30.0%
ATTCTTCTAATGTCCCTAAT+TGG + chr5.2:50994819-50994838 MS.gene73952:CDS 30.0%
CTTTGCTTCATAACCATAAT+AGG + chr5.2:50995483-50995502 MS.gene73952:intron 30.0%
TAATCTACTGAGATTTGCAT+AGG - chr5.2:50994399-50994418 None:intergenic 30.0%
! AACTGATGAGATTAAGGTTT+TGG + chr5.2:50994571-50994590 MS.gene73952:CDS 30.0%
!! AGGAGTATTTACAATGAGAA+AGG - chr5.2:50995123-50995142 None:intergenic 30.0%
AGATTTCCAACCAATCTTCA+TGG - chr5.2:50994702-50994721 None:intergenic 35.0%
AGGATCAACAAAGAGATCAA+CGG - chr5.2:50994114-50994133 None:intergenic 35.0%
ATTGGTATGCAGTCACAATT+AGG + chr5.2:50995558-50995577 MS.gene73952:CDS 35.0%
CTATCAAGTGCAAGAACAAT+GGG - chr5.2:50994994-50995013 None:intergenic 35.0%
GATGAAAACAACAGAATCGT+TGG - chr5.2:50994465-50994484 None:intergenic 35.0%
GATGACAATTTCTCAGCTTA+AGG + chr5.2:50994772-50994791 MS.gene73952:CDS 35.0%
GCCAATAAAGATATCTCACT+TGG - chr5.2:50995525-50995544 None:intergenic 35.0%
TACAATGAGAAAGGCTTAGA+AGG - chr5.2:50995114-50995133 None:intergenic 35.0%
TCTATCAAGTGCAAGAACAA+TGG - chr5.2:50994995-50995014 None:intergenic 35.0%
TGACAATTTCTCAGCTTAAG+GGG + chr5.2:50994774-50994793 MS.gene73952:CDS 35.0%
TTATCATAGGTTAACTGGGA+TGG + chr5.2:50995245-50995264 MS.gene73952:intron 35.0%
TTGGCATATCTGTGCAATAT+TGG + chr5.2:50995540-50995559 MS.gene73952:CDS 35.0%
! AAGTCTAGGAGTTTTTCTTG+AGG - chr5.2:50995369-50995388 None:intergenic 35.0%
! ATCAAGTTAGAGCATTCGAT+AGG - chr5.2:50994296-50994315 None:intergenic 35.0%
! ATGAAGATTGGTTGGAAATC+TGG + chr5.2:50994701-50994720 MS.gene73952:CDS 35.0%
! GTTTTCATCAAAAACTGTGC+AGG + chr5.2:50994476-50994495 MS.gene73952:CDS 35.0%
!! AATCTTTGGAATCTTGACGT+CGG - chr5.2:50993973-50993992 None:intergenic 35.0%
AAAATATGGCAGATATGCGC+CGG + chr5.2:50993945-50993964 MS.gene73952:CDS 40.0%
AAAGTTTACTACTTCCCACG+AGG + chr5.2:50993999-50994018 MS.gene73952:CDS 40.0%
ACGATCAAGAATGGTTCTTG+TGG - chr5.2:50994060-50994079 None:intergenic 40.0%
AGACTCGTCTAAATCAAGCT+TGG - chr5.2:50994324-50994343 None:intergenic 40.0%
ATCCAAACCTAGTCAATCCT+TGG + chr5.2:50995285-50995304 MS.gene73952:CDS 40.0%
ATTATCCGACAGCTATTGGT+TGG + chr5.2:50994639-50994658 MS.gene73952:CDS 40.0%
CAAGTTCACTACAGATGAAG+CGG + chr5.2:50994529-50994548 MS.gene73952:CDS 40.0%
GAACCATTCTTGATCGTTAC+CGG + chr5.2:50994063-50994082 MS.gene73952:CDS 40.0%
GACTCGTCTAAATCAAGCTT+GGG - chr5.2:50994323-50994342 None:intergenic 40.0%
GCAAGAACAATGGGAACAAT+GGG - chr5.2:50994985-50995004 None:intergenic 40.0%
GTGTATTATCCGACAGCTAT+TGG + chr5.2:50994635-50994654 MS.gene73952:CDS 40.0%
TATATGTGTACCCCCATTCT+CGG - chr5.2:50994376-50994395 None:intergenic 40.0%
TCAGTAGATTACATACTGGC+TGG + chr5.2:50994408-50994427 MS.gene73952:CDS 40.0%
TGCAAGAACAATGGGAACAA+TGG - chr5.2:50994986-50995005 None:intergenic 40.0%
TGTGCAGGAAAGATATCTGT+CGG + chr5.2:50994491-50994510 MS.gene73952:CDS 40.0%
TTGACTAGGTTTGGATTCTG+CGG - chr5.2:50995281-50995300 None:intergenic 40.0%
TTGGCTCATTGGACCTATTA+TGG - chr5.2:50995499-50995518 None:intergenic 40.0%
TTGTAAACTTCAACCTGCCA+AGG - chr5.2:50995305-50995324 None:intergenic 40.0%
! GCGCATATCTGCCATATTTT+GGG - chr5.2:50993945-50993964 None:intergenic 40.0%
! TCTAGGAGTTTTTCTTGAGG+CGG - chr5.2:50995366-50995385 None:intergenic 40.0%
!! AAGATATCTCACTTGGTGCT+TGG - chr5.2:50995518-50995537 None:intergenic 40.0%
!! ATCTTTGGAATCTTGACGTC+GGG - chr5.2:50993972-50993991 None:intergenic 40.0%
!! TATTGGTTGGCGTGATTTTG+TGG + chr5.2:50994652-50994671 MS.gene73952:CDS 40.0%
!!! GATTAAGGTTTTGGATGCAG+TGG + chr5.2:50994580-50994599 MS.gene73952:CDS 40.0%
AAACCTAGTCAATCCTTGGC+AGG + chr5.2:50995289-50995308 MS.gene73952:CDS 45.0%
ACCTTAAAAGCCGAGAATGG+GGG + chr5.2:50994363-50994382 MS.gene73952:CDS 45.0%
ACGATGCCATGAAGATTGGT+TGG + chr5.2:50994693-50994712 MS.gene73952:CDS 45.0%
ACTACAGATGAAGCGGATGA+AGG + chr5.2:50994536-50994555 MS.gene73952:CDS 45.0%
AGATATCTGTCGGAATTCGC+AGG + chr5.2:50994501-50994520 MS.gene73952:CDS 45.0%
CCAAACCTTGGCAGTCTTAA+CGG + chr5.2:50995452-50995471 MS.gene73952:intron 45.0%
CGACCTTAAAAGCCGAGAAT+GGG + chr5.2:50994361-50994380 MS.gene73952:CDS 45.0%
CGCTTCATCTGTAGTGAACT+TGG - chr5.2:50994531-50994550 None:intergenic 45.0%
CTCGTGTGGAACCCAAAATA+TGG + chr5.2:50993931-50993950 MS.gene73952:CDS 45.0%
GACCTTAAAAGCCGAGAATG+GGG + chr5.2:50994362-50994381 MS.gene73952:CDS 45.0%
GATGAACTCTCAGCAAGTCT+AGG - chr5.2:50995383-50995402 None:intergenic 45.0%
GTTGACGATGCCATGAAGAT+TGG + chr5.2:50994689-50994708 MS.gene73952:CDS 45.0%
TGACTAGGTTTGGATTCTGC+GGG - chr5.2:50995280-50995299 None:intergenic 45.0%
TGCCAAGGATTGACTAGGTT+TGG - chr5.2:50995290-50995309 None:intergenic 45.0%
TGTCTCCAACATCGTCTTCT+TGG - chr5.2:50994214-50994233 None:intergenic 45.0%
TTGCGTGAGAGTCTTGACAT+AGG - chr5.2:50994246-50994265 None:intergenic 45.0%
TTTGGATGCAGTGGAATTGG+CGG + chr5.2:50994589-50994608 MS.gene73952:CDS 45.0%
! GGCGCATATCTGCCATATTT+TGG - chr5.2:50993946-50993965 None:intergenic 45.0%
! TTTTCTTGAGGCGGAGTTGA+CGG - chr5.2:50995357-50995376 None:intergenic 45.0%
!! TCTTTGGAATCTTGACGTCG+GGG - chr5.2:50993971-50993990 None:intergenic 45.0%
!!! CATATTTTGGGTTCCACACG+AGG - chr5.2:50993933-50993952 None:intergenic 45.0%
!!! CCATTCTCGGCTTTTAAGGT+CGG - chr5.2:50994363-50994382 None:intergenic 45.0%
!!! GGTTTTGGATGCAGTGGAAT+TGG + chr5.2:50994586-50994605 MS.gene73952:CDS 45.0%
ACAGATGAAGCGGATGAAGG+AGG + chr5.2:50994539-50994558 MS.gene73952:CDS 50.0%
ACCTCAAGCATGCGCCAATT+AGG - chr5.2:50994836-50994855 None:intergenic 50.0%
AGGGGGTTCTTGGTCAGTTA+CGG - chr5.2:50994174-50994193 None:intergenic 50.0%
ATGGTTCTTGTGGCAGCAGT+AGG - chr5.2:50994050-50994069 None:intergenic 50.0%
CAACCTGCCAAGGATTGACT+AGG - chr5.2:50995295-50995314 None:intergenic 50.0%
CAGTTTGGCAAAGACCTCGT+CGG - chr5.2:50994141-50994160 None:intergenic 50.0%
CATGTTCCAGATGACCTCGT+GGG - chr5.2:50994016-50994035 None:intergenic 50.0%
CCAAGGTTTGGCTATGTGTC+AGG - chr5.2:50995443-50995462 None:intergenic 50.0%
CCGACCTTAAAAGCCGAGAA+TGG + chr5.2:50994360-50994379 MS.gene73952:CDS 50.0%
CCGTTAAGACTGCCAAGGTT+TGG - chr5.2:50995455-50995474 None:intergenic 50.0%
CCTCAAGCATGCGCCAATTA+GGG - chr5.2:50994835-50994854 None:intergenic 50.0%
CCTGACACATAGCCAAACCT+TGG + chr5.2:50995440-50995459 MS.gene73952:intron 50.0%
GAGACGATGCATGGAATGGA+TGG - chr5.2:50994089-50994108 None:intergenic 50.0%
GGAAGAGACGATGCATGGAA+TGG - chr5.2:50994093-50994112 None:intergenic 50.0%
TCAACGGAAGAGACGATGCA+TGG - chr5.2:50994098-50994117 None:intergenic 50.0%
TCACGCCAACCAATAGCTGT+CGG - chr5.2:50994647-50994666 None:intergenic 50.0%
TCTTCTTGGCCAGGAACTAC+AGG - chr5.2:50994200-50994219 None:intergenic 50.0%
TGGCCGGTAACGATCAAGAA+TGG - chr5.2:50994069-50994088 None:intergenic 50.0%
TGGTTCTTGTGGCAGCAGTA+GGG - chr5.2:50994049-50994068 None:intergenic 50.0%
TTCATCCCCCCAACAAACCT+TGG + chr5.2:50995397-50995416 MS.gene73952:CDS 50.0%
! ACCCCCATTCTCGGCTTTTA+AGG - chr5.2:50994367-50994386 None:intergenic 50.0%
! TGGTTGGCGTGATTTTGTGG+TGG + chr5.2:50994655-50994674 MS.gene73952:CDS 50.0%
!! TCACTTGGTGCTTGGCTCAT+TGG - chr5.2:50995510-50995529 None:intergenic 50.0%
!!! ATTTTGGGTTCCACACGAGG+TGG - chr5.2:50993930-50993949 None:intergenic 50.0%
CAGCACCGTTAAGACTGCCA+AGG - chr5.2:50995460-50995479 None:intergenic 55.0%
CCAACATCGTCTTCTTGGCC+AGG - chr5.2:50994209-50994228 None:intergenic 55.0%
CCCTAATTGGCGCATGCTTG+AGG + chr5.2:50994832-50994851 MS.gene73952:CDS 55.0%
CCTGGCCAAGAAGACGATGT+TGG + chr5.2:50994206-50994225 MS.gene73952:CDS 55.0%
CGATGCATGGAATGGATGGC+CGG - chr5.2:50994085-50994104 None:intergenic 55.0%
CTACTTCCCACGAGGTCATC+TGG + chr5.2:50994007-50994026 MS.gene73952:CDS 55.0%
CTTGGTCAGTTACGGGAGTC+AGG - chr5.2:50994166-50994185 None:intergenic 55.0%
GCATGTTCCAGATGACCTCG+TGG - chr5.2:50994017-50994036 None:intergenic 55.0%
GGGGGTTCTTGGTCAGTTAC+GGG - chr5.2:50994173-50994192 None:intergenic 55.0%
GGTTCTTGTGGCAGCAGTAG+GGG - chr5.2:50994048-50994067 None:intergenic 55.0%
TACGGGAGTCAGGAGCAGTT+TGG - chr5.2:50994156-50994175 None:intergenic 55.0%
TCGACCCTGCCAAGGTTTGT+TGG - chr5.2:50995409-50995428 None:intergenic 55.0%
TCTTGGCCAGGAACTACAGG+AGG - chr5.2:50994197-50994216 None:intergenic 55.0%
TGTTGATCCTCACACCGACG+AGG + chr5.2:50994124-50994143 MS.gene73952:CDS 55.0%
! CGACCCTGCCAAGGTTTGTT+GGG - chr5.2:50995408-50995427 None:intergenic 55.0%
!! ACCCTGCCAAGGTTTGTTGG+GGG - chr5.2:50995406-50995425 None:intergenic 55.0%
!! GACCCTGCCAAGGTTTGTTG+GGG - chr5.2:50995407-50995426 None:intergenic 55.0%
ACGGTGGAGGAGGAAGTCGA+AGG - chr5.2:50995338-50995357 None:intergenic 60.0%
AGTACCACTCGACCCTGCCA+AGG - chr5.2:50995417-50995436 None:intergenic 60.0%
CAAACCTTGGCAGGGTCGAG+TGG + chr5.2:50995410-50995429 MS.gene73952:CDS 60.0%
CCAGGAACTACAGGAGGAGG+GGG - chr5.2:50994191-50994210 None:intergenic 60.0%
CCCCCCAACAAACCTTGGCA+GGG + chr5.2:50995402-50995421 MS.gene73952:CDS 60.0%
CTACAGGAGGAGGGGGTTCT+TGG - chr5.2:50994184-50994203 None:intergenic 60.0%
GCAAAGACCTCGTCGGTGTG+AGG - chr5.2:50994134-50994153 None:intergenic 60.0%
GCCAGGAACTACAGGAGGAG+GGG - chr5.2:50994192-50994211 None:intergenic 60.0%
GGCCAGGAACTACAGGAGGA+GGG - chr5.2:50994193-50994212 None:intergenic 60.0%
TCATCCTCTGCCACCTCGTG+TGG + chr5.2:50993917-50993936 MS.gene73952:CDS 60.0%
TCCCCCCAACAAACCTTGGC+AGG + chr5.2:50995401-50995420 MS.gene73952:CDS 60.0%
TCTTGAGGCGGAGTTGACGG+TGG - chr5.2:50995354-50995373 None:intergenic 60.0%
TGGAATCTTGACGTCGGGGC+CGG - chr5.2:50993967-50993986 None:intergenic 60.0%
TGGCCAGGAACTACAGGAGG+AGG - chr5.2:50994194-50994213 None:intergenic 60.0%
! GAGGAGGAAGTCGAAGGTGC+AGG - chr5.2:50995332-50995351 None:intergenic 60.0%
!! CCCTGCCAAGGTTTGTTGGG+GGG - chr5.2:50995405-50995424 None:intergenic 60.0%
CCCCCTCCTCCTGTAGTTCC+TGG + chr5.2:50994188-50994207 MS.gene73952:CDS 65.0%
GGTTCCACACGAGGTGGCAG+AGG - chr5.2:50993924-50993943 None:intergenic 65.0%
TGAGGCGGAGTTGACGGTGG+AGG - chr5.2:50995351-50995370 None:intergenic 65.0%
GGCGGAGTTGACGGTGGAGG+AGG - chr5.2:50995348-50995367 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 50993912 50995590 50993912 ID=MS.gene73952
chr5.2 mRNA 50993912 50995590 50993912 ID=MS.gene73952.t1;Parent=MS.gene73952
chr5.2 exon 50993912 50994853 50993912 ID=MS.gene73952.t1.exon1;Parent=MS.gene73952.t1
chr5.2 CDS 50993912 50994853 50993912 ID=cds.MS.gene73952.t1;Parent=MS.gene73952.t1
chr5.2 exon 50995254 50995431 50995254 ID=MS.gene73952.t1.exon2;Parent=MS.gene73952.t1
chr5.2 CDS 50995254 50995431 50995254 ID=cds.MS.gene73952.t1;Parent=MS.gene73952.t1
chr5.2 exon 50995505 50995590 50995505 ID=MS.gene73952.t1.exon3;Parent=MS.gene73952.t1
chr5.2 CDS 50995505 50995590 50995505 ID=cds.MS.gene73952.t1;Parent=MS.gene73952.t1
Gene Sequence

>MS.gene73952

ATGTCTCATCCTCTGCCACCTCGTGTGGAACCCAAAATATGGCAGATATGCGCCGGCCCCGACGTCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCACGAGGTCATCTGGAACATGCATGTTCTTCCCCTACTGCTGCCACAAGAACCATTCTTGATCGTTACCGGCCATCCATTCCATGCATCGTCTCTTCCGTTGATCTCTTTGTTGATCCTCACACCGACGAGGTCTTTGCCAAACTGCTCCTGACTCCCGTAACTGACCAAGAACCCCCTCCTCCTGTAGTTCCTGGCCAAGAAGACGATGTTGGAGACAATCTTGTTTCCTATGTCAAGACTCTCACGCAATCTGATTGTGCAAGAGTATTATGTGTACCTATCGAATGCTCTAACTTGATCTTTCCCAAGCTTGATTTAGACGAGTCTCATAGCATCACTGTCACCGACCTTAAAAGCCGAGAATGGGGGTACACATATACCTATGCAAATCTCAGTAGATTACATACTGGCTGGTTAAATTTTGTACGAGAGAAGAAACTCGTCGCCAACGATTCTGTTGTTTTCATCAAAAACTGTGCAGGAAAGATATCTGTCGGAATTCGCAGGAACACCAAGTTCACTACAGATGAAGCGGATGAAGGAGGCGAGAATTTAACTGATGAGATTAAGGTTTTGGATGCAGTGGAATTGGCGGAGAAGAACACAGCATTTGATGTTGTGTATTATCCGACAGCTATTGGTTGGCGTGATTTTGTGGTGGATGCTAAGACTGTTGACGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGAGTGAAACTTCCTTTGAAGAAATATGAATCTTCAAGTTCAAAGATGACAATTTCTCAGCTTAAGGGGACAATCTCTTTTGTCTTTAATGATTCTTCTAATGTCCCTAATTGGCGCATGCTTGAGGTACATATGCTTTCTTAATTTGGTCTGATTATATTTAGTTGAATCCATGATAAGATTATTTGATTGATATATATGAGTGTTGAAGTTAATACATGAAACTATAATTAATTAGATGATACTTGATGATTCCCATTGTTCCCATTGTTCTTGCACTTGATAGATATCTCATGACACTTAATGTTTACTTTATGTAATCAGATTGTTTTTATACGAAACTGCCAGTGATATTCACTAAAAATAGTTATGAAGTTTAAGAACCTTCTAAGCCTTTCTCATTGTAAATACTCCTAATGCTAAGTAGAAACTTTTGATGTCTAAATACATATATACTATATATATTTTATCAAATATTTCAAATTATTGATATTGATTCTTACTGTTTTTTATCTTTTTATCATAGGTTAACTGGGATGGACTTGATTTCCCGCAGAATCCAAACCTAGTCAATCCTTGGCAGGTTGAAGTTTACAACATACCTGCACCTTCGACTTCCTCCTCCACCGTCAACTCCGCCTCAAGAAAAACTCCTAGACTTGCTGAGAGTTCATCCCCCCAACAAACCTTGGCAGGGTCGAGTGGTACTTTGCCTGACACATAGCCAAACCTTGGCAGTCTTAACGGTGCTGACTCTTTGCTTCATAACCATAATAGGTCCAATGAGCCAAGCACCAAGTGAGATATCTTTATTGGCATATCTGTGCAATATTGGTATGCAGTCACAATTAGGAACTCAGTGA
Protein sequence

>MS.gene73952.t1

MSHPLPPRVEPKIWQICAGPDVKIPKIHSKVYYFPRGHLEHACSSPTAATRTILDRYRPSIPCIVSSVDLFVDPHTDEVFAKLLLTPVTDQEPPPPVVPGQEDDVGDNLVSYVKTLTQSDCARVLCVPIECSNLIFPKLDLDESHSITVTDLKSREWGYTYTYANLSRLHTGWLNFVREKKLVANDSVVFIKNCAGKISVGIRRNTKFTTDEADEGGENLTDEIKVLDAVELAEKNTAFDVVYYPTAIGWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKYESSSSKMTISQLKGTISFVFNDSSNVPNWRMLEVNWDGLDFPQNPNLVNPWQVEVYNIPAPSTSSSTVNSASRKTPRLAESSSPQQTLAGSSGPMSQAPSEISLLAYLCNIGMQSQLGTQ