AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73955

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73955.t1 MTR_5g061890 55.703 377 99 8 1 319 1 367 3.09e-124 370
MS.gene73955.t1 MTR_5g060780 55.325 385 103 9 1 327 1 374 8.64e-124 369
MS.gene73955.t1 MTR_5g460920 55.325 385 103 9 1 327 1 374 1.03e-123 369
MS.gene73955.t1 MTR_5g060630 44.231 416 130 8 1 315 1 415 5.58e-91 289
MS.gene73955.t1 MTR_5g460740 44.231 416 130 8 1 315 1 415 5.58e-91 289
MS.gene73955.t1 MTR_1g058210 43.902 369 142 9 1 311 1 362 4.18e-87 276
MS.gene73955.t1 MTR_5g061220 37.363 455 172 14 1 358 8 446 6.82e-77 252
MS.gene73955.t1 MTR_2g024430 40.957 376 159 11 1 321 9 376 7.60e-73 241
MS.gene73955.t1 MTR_5g040880 41.390 331 134 9 9 286 8 331 1.33e-65 222
MS.gene73955.t1 MTR_2g006270 38.506 348 142 9 1 287 1 337 1.50e-59 204
MS.gene73955.t1 MTR_5g060770 46.570 277 115 11 61 324 7 263 2.07e-56 193
MS.gene73955.t1 MTR_2g006380 36.905 336 144 10 9 288 17 340 3.92e-56 195
MS.gene73955.t1 MTR_5g062970 49.275 207 88 6 12 206 38 239 2.02e-55 186
MS.gene73955.t1 MTR_5g082140 33.494 415 192 14 9 355 9 407 1.06e-53 189
MS.gene73955.t1 MTR_5g040740 39.688 320 130 10 4 267 3 315 3.26e-52 183
MS.gene73955.t1 MTR_1g064430 36.842 228 125 5 9 222 24 246 3.76e-39 152
MS.gene73955.t1 MTR_1g064430 36.842 228 125 5 9 222 37 259 4.31e-39 152
MS.gene73955.t1 MTR_3g073420 41.784 213 105 7 9 209 16 221 2.52e-38 149
MS.gene73955.t1 MTR_5g460910 39.649 285 122 13 51 324 13 258 1.71e-37 141
MS.gene73955.t1 MTR_2g094570 38.356 219 95 7 9 205 8 208 7.12e-37 145
MS.gene73955.t1 MTR_2g094570 38.356 219 95 7 9 205 8 208 1.36e-36 144
MS.gene73955.t1 MTR_2g094570 38.356 219 95 7 9 205 64 264 1.39e-36 145
MS.gene73955.t1 MTR_7g101280 37.238 239 111 9 9 225 28 249 8.40e-35 139
MS.gene73955.t1 MTR_0041s0110 37.238 239 111 9 9 225 28 249 8.40e-35 139
MS.gene73955.t1 MTR_4g058930 36.245 229 125 6 9 225 9 228 4.27e-33 134
MS.gene73955.t1 MTR_1g094960 36.667 210 113 6 9 205 16 218 5.11e-33 133
MS.gene73955.t1 MTR_4g058930 36.245 229 125 6 9 225 9 228 5.12e-33 134
MS.gene73955.t1 MTR_2g018690 30.726 358 162 15 9 290 20 367 9.87e-33 134
MS.gene73955.t1 MTR_2g005240 29.167 408 183 17 12 347 23 396 3.21e-32 131
MS.gene73955.t1 MTR_8g100050 29.290 338 171 9 12 286 59 391 4.58e-32 131
MS.gene73955.t1 MTR_8g100050 29.290 338 171 9 12 286 59 391 7.60e-32 130
MS.gene73955.t1 MTR_5g076270 29.086 361 164 14 9 290 21 368 1.03e-29 124
MS.gene73955.t1 MTR_8g079492 29.050 358 167 15 9 290 20 366 4.09e-29 122
MS.gene73955.t1 MTR_8g079492 29.050 358 167 15 9 290 20 366 4.76e-29 122
MS.gene73955.t1 MTR_3g064050 28.453 362 165 14 9 290 23 370 1.09e-28 121
MS.gene73955.t1 MTR_1g024025 28.883 367 172 15 6 295 37 391 1.29e-28 121
MS.gene73955.t1 MTR_8g027440 28.453 362 184 12 9 305 26 377 2.82e-28 119
MS.gene73955.t1 MTR_2g014770 28.297 364 173 13 7 294 42 393 3.36e-28 119
MS.gene73955.t1 MTR_4g021580 27.174 368 191 13 10 313 17 371 3.38e-28 119
MS.gene73955.t1 MTR_4g124900 28.205 351 170 13 6 286 17 355 3.40e-28 120
MS.gene73955.t1 MTR_4g124900 28.205 351 170 13 6 286 17 355 3.67e-28 120
MS.gene73955.t1 MTR_2g014770 28.297 364 173 13 7 294 42 393 4.46e-28 119
MS.gene73955.t1 MTR_2g043250 27.966 354 167 12 6 286 17 355 1.63e-27 118
MS.gene73955.t1 MTR_7g101275 36.634 202 99 7 22 205 2 192 3.10e-27 114
MS.gene73955.t1 MTR_2g093740 36.239 218 110 9 12 205 56 268 3.77e-26 113
MS.gene73955.t1 MTR_2g093740 36.239 218 110 9 12 205 56 268 4.13e-26 113
MS.gene73955.t1 MTR_2g093740 36.239 218 110 9 12 205 56 268 4.18e-26 113
MS.gene73955.t1 MTR_7g062540 28.378 370 179 15 9 306 11 366 5.53e-26 112
MS.gene73955.t1 MTR_4g088210 29.067 375 180 13 12 312 38 400 5.68e-26 112
MS.gene73955.t1 MTR_4g088210 29.067 375 180 13 12 312 38 400 7.59e-26 112
MS.gene73955.t1 MTR_8g101360 32.889 225 116 8 9 210 28 240 1.48e-24 108
MS.gene73955.t1 MTR_2g093740 34.199 231 110 9 12 205 56 281 1.78e-24 108
MS.gene73955.t1 MTR_2g093740 34.199 231 110 9 12 205 56 281 1.81e-24 108
MS.gene73955.t1 MTR_2g093740 34.199 231 110 9 12 205 56 281 1.92e-24 108
MS.gene73955.t1 MTR_0041s0120 33.054 239 120 9 22 234 2 226 1.84e-23 103
MS.gene73955.t1 MTR_4g021580 31.905 210 124 6 10 205 17 221 3.08e-23 104
MS.gene73955.t1 MTR_4g060460 28.358 402 202 15 12 343 54 439 6.39e-22 100
MS.gene73955.t1 MTR_4g060460 28.378 370 185 13 12 313 54 411 7.67e-22 100
MS.gene73955.t1 MTR_5g062960 37.662 154 70 5 215 360 34 169 1.38e-19 87.4
MS.gene73955.t1 MTR_8g079492 28.223 287 125 13 76 290 7 284 2.20e-17 86.3
MS.gene73955.t1 MTR_8g446900 34.839 155 83 6 63 205 14 162 1.27e-14 76.3
MS.gene73955.t1 MTR_2g093740 39.669 121 54 6 104 205 18 138 2.40e-12 70.1
MS.gene73955.t1 MTR_2g093740 39.669 121 54 6 104 205 18 138 2.41e-12 70.1
MS.gene73955.t1 MTR_2g093740 35.821 134 54 6 104 205 18 151 8.71e-11 65.1
MS.gene73955.t1 MTR_2g093740 35.821 134 54 6 104 205 18 151 9.28e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73955.t1 AT1G77850 39.535 215 108 8 5 205 13 219 4.05e-41 157
MS.gene73955.t1 AT1G77850 39.535 215 108 8 5 205 13 219 4.18e-41 156
MS.gene73955.t1 AT3G61830 31.186 388 174 17 12 329 25 389 8.37e-35 139
MS.gene73955.t1 AT2G28350 38.249 217 106 7 9 205 7 215 1.33e-34 139
MS.gene73955.t1 AT2G28350 38.249 217 106 7 9 205 7 215 1.53e-34 138
MS.gene73955.t1 AT2G46530 30.372 349 160 14 9 288 18 352 7.38e-34 136
MS.gene73955.t1 AT2G46530 30.372 349 160 14 9 288 39 373 1.16e-33 135
MS.gene73955.t1 AT4G30080 36.866 217 105 6 9 205 16 220 1.63e-32 132
MS.gene73955.t1 AT1G59750 30.725 345 156 13 12 286 22 353 2.85e-32 132
MS.gene73955.t1 AT1G59750 30.725 345 156 13 12 286 22 353 3.01e-32 131
MS.gene73955.t1 AT1G59750 30.725 345 156 13 12 286 22 353 3.08e-32 131
MS.gene73955.t1 AT1G59750 30.725 345 156 13 12 286 22 353 3.08e-32 131
MS.gene73955.t1 AT5G37020 28.926 363 162 16 9 290 19 366 2.16e-31 129
MS.gene73955.t1 AT5G37020 28.926 363 162 16 9 290 19 366 3.11e-31 129
MS.gene73955.t1 AT1G30330 29.132 357 169 13 9 290 22 369 2.00e-30 127
MS.gene73955.t1 AT1G30330 29.132 357 169 13 9 290 22 369 2.00e-30 127
MS.gene73955.t1 AT1G30330 29.132 357 169 13 9 290 20 367 2.07e-30 127
MS.gene73955.t1 AT2G33860 31.063 367 171 15 12 308 54 408 1.60e-29 123
MS.gene73955.t1 AT1G35540 28.684 380 189 14 12 325 27 390 7.68e-29 121
MS.gene73955.t1 AT5G62000 28.940 349 170 13 9 286 52 393 8.65e-29 122
MS.gene73955.t1 AT5G62000 28.940 349 170 13 9 286 52 393 8.65e-29 122
MS.gene73955.t1 AT5G62000 28.940 349 170 13 9 286 52 393 8.65e-29 122
MS.gene73955.t1 AT5G62000 28.940 349 170 13 9 286 52 393 8.65e-29 122
MS.gene73955.t1 AT5G62000 28.824 340 170 12 12 286 61 393 9.67e-29 121
MS.gene73955.t1 AT4G23980 26.882 372 185 12 12 315 12 364 1.79e-28 120
MS.gene73955.t1 AT4G23980 26.882 372 185 12 12 315 12 364 2.00e-28 120
MS.gene73955.t1 AT1G19220 27.507 349 171 12 8 286 19 355 5.34e-28 119
MS.gene73955.t1 AT1G35520 29.326 341 160 12 12 286 27 352 9.65e-28 117
MS.gene73955.t1 AT1G35240 29.912 341 158 13 12 286 27 352 1.49e-27 117
MS.gene73955.t1 AT1G34410 28.739 341 162 12 12 286 27 352 1.59e-27 117
MS.gene73955.t1 AT5G20730 29.023 348 171 14 6 286 18 356 1.90e-27 118
MS.gene73955.t1 AT5G20730 29.226 349 170 15 6 286 18 357 2.68e-27 117
MS.gene73955.t1 AT5G20730 28.940 349 171 14 6 286 18 357 2.92e-27 117
MS.gene73955.t1 AT1G34310 29.326 341 160 12 12 286 27 352 3.48e-27 116
MS.gene73955.t1 AT1G34390 34.762 210 109 5 12 205 27 224 4.47e-27 115
MS.gene73955.t1 AT1G19850 33.193 238 131 10 6 221 48 279 3.93e-26 113
MS.gene73955.t1 AT1G19850 33.193 238 131 10 6 221 37 268 4.49e-26 113
MS.gene73955.t1 AT1G43950 33.654 208 111 6 12 204 27 222 1.81e-23 99.4
MS.gene73955.t1 AT1G34170 29.338 317 167 12 12 286 25 326 1.15e-22 101
MS.gene73955.t1 AT3G61830 30.564 337 146 15 59 329 24 338 1.29e-22 102
MS.gene73955.t1 AT5G60450 34.562 217 115 9 12 205 41 253 1.70e-22 102
MS.gene73955.t1 AT5G60450 34.562 217 115 9 12 205 65 277 1.87e-22 102
MS.gene73955.t1 AT1G34170 29.448 326 172 13 12 294 25 335 2.38e-22 101
MS.gene73955.t1 AT1G34170 26.957 345 165 12 12 286 25 352 2.65e-20 94.7
MS.gene73955.t1 AT5G37020 29.268 246 97 12 117 290 31 271 7.48e-15 78.2
MS.gene73955.t1 AT2G33860 28.794 257 111 11 117 308 2 251 1.35e-12 70.5

Find 156 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTTTATCATAGGTTAAA+TGG 0.116737 5.2:-51034832 MS.gene73955:intron
GGCACATTTCTGCCATATTT+TGG 0.137339 5.2:+51036123 None:intergenic
TTCCATCATTGTCTCCTTCT+TGG 0.175144 5.2:+51035843 None:intergenic
ATAGTTAAATTTGAAGATTC+AGG 0.238302 5.2:+51035363 None:intergenic
ACCTTAAGCATGTGCCAATT+AGG 0.244625 5.2:+51035291 None:intergenic
GGTGGTTTCCGCGGGGTATT+AGG 0.250113 5.2:+51034803 None:intergenic
TAAACTTTAGAGTGAATCTT+TGG 0.260426 5.2:+51036082 None:intergenic
GCATGTTCCAAATGACCTTT+TGG 0.261628 5.2:+51036052 None:intergenic
ATTCTTCTAATGTCCCTAAT+TGG 0.268826 5.2:-51035305 MS.gene73955:CDS
AAGTTGATTGTGGCAGCATT+AGG 0.285643 5.2:+51036019 None:intergenic
TCTTGAGACTTCTGCAACTC+TGG 0.293011 5.2:+51035731 None:intergenic
CTACTTCCCAAAAGGTCATT+TGG 0.306082 5.2:-51036059 MS.gene73955:CDS
GCCACAATCAACTTTCTTGA+TGG 0.314616 5.2:-51036010 MS.gene73955:CDS
GATGAAAACAATGGAATCTT+CGG 0.318104 5.2:+51035601 None:intergenic
CGCAGAGTCGACTGATACTT+TGG 0.321532 5.2:-51034429 MS.gene73955:CDS
CTCCTCTGGACCCCAAAATA+TGG 0.325388 5.2:-51036135 MS.gene73955:CDS
CTCGACTCTGCGCCCAAGTC+AGG 0.332469 5.2:+51034371 None:intergenic
TGACCAGGGGTGGTTTCCGC+GGG 0.335899 5.2:+51034795 None:intergenic
TCTTGGCCGGGAACTACAAC+GGG 0.337311 5.2:+51035860 None:intergenic
ATGAAGATTGGTTGGAAATC+TGG 0.337904 5.2:-51035414 MS.gene73955:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5.2:-51034108 MS.gene73955:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5.2:-51034246 MS.gene73955:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.342634 5.2:-51034315 MS.gene73955:CDS
AGTTGATTGTGGCAGCATTA+GGG 0.346873 5.2:+51036020 None:intergenic
CTCTTTATCATAGGTTAAAT+GGG 0.347475 5.2:-51034831 MS.gene73955:intron
TCTTCAAATTTAACTATAAG+AGG 0.347983 5.2:-51035357 MS.gene73955:CDS
ATGAAAACAATGGAATCTTC+GGG 0.351749 5.2:+51035602 None:intergenic
CCAAGCTTTAGCCTTGTATC+AGG 0.353230 5.2:+51034476 None:intergenic
TCACTTGGTGCTTGGCTCAT+TGG 0.356639 5.2:+51034004 None:intergenic
GAGGGCAAAGCTTCGTTTGA+TGG 0.363032 5.2:-51035388 MS.gene73955:CDS
GTCTCTGTCACTGACCTTCC+AGG 0.363192 5.2:-51035707 MS.gene73955:CDS
AGTGGTACTTTGCTTGATAC+AGG 0.364586 5.2:-51034557 MS.gene73955:CDS
CAGTTCTAAAGGTGCGGACT+TGG 0.371782 5.2:-51034177 MS.gene73955:CDS
TTCCCACCTCTTTCAGCTGC+AGG 0.374017 5.2:+51035527 None:intergenic
ATCTTTGGAATCTTGACGTC+GGG 0.375178 5.2:+51036097 None:intergenic
GAAGAACTCTGAGATAGTTT+AGG 0.377530 5.2:+51034704 None:intergenic
CCTTAAGCATGTGCCAATTA+GGG 0.381506 5.2:+51035292 None:intergenic
CCTGGCCCCGTTGTAGTTCC+CGG 0.382636 5.2:-51035866 MS.gene73955:CDS
AGATTTCCAACCAATCTTCA+TGG 0.383662 5.2:+51035416 None:intergenic
AGTGATACTTTGGCTGATAC+AGG 0.384060 5.2:-51034212 MS.gene73955:CDS
AGTGATACTTTGGCTGATAC+AGG 0.384060 5.2:-51034281 MS.gene73955:CDS
AGTGATACTTTGGCTGATAC+AGG 0.384060 5.2:-51034350 MS.gene73955:CDS
TACGGGATTGAGGACTAGTT+TGG 0.392285 5.2:+51035913 None:intergenic
ACAATAACTGATACTAAATC+TGG 0.395790 5.2:-51035791 MS.gene73955:CDS
ATCATTGTCTCCTTCTTGGC+CGG 0.398644 5.2:+51035847 None:intergenic
CCCTAATTGGCACATGCTTA+AGG 0.403221 5.2:-51035292 MS.gene73955:intron
CAGTTCTAAAGGCGCTGACT+TGG 0.411550 5.2:-51034453 MS.gene73955:CDS
TCTTCCTCACCGACCTCCTC+TGG 0.413308 5.2:-51036149 MS.gene73955:CDS
GTGTTGAGTTGTTGCCTCAT+AGG 0.419590 5.2:-51034028 MS.gene73955:CDS
AACCACCCCTGGTCAATCCT+TGG 0.420228 5.2:-51034787 MS.gene73955:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.435934 5.2:-51034084 MS.gene73955:CDS
CCGGGAACTACAACGGGGCC+AGG 0.453611 5.2:+51035866 None:intergenic
CTAAAGCTTGGCAGTTCTAA+AGG 0.454684 5.2:-51034119 MS.gene73955:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5.2:-51034222 MS.gene73955:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5.2:-51034291 MS.gene73955:CDS
CGCAGAGTCGAGTGATACTT+TGG 0.455775 5.2:-51034360 MS.gene73955:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.457123 5.2:-51034188 MS.gene73955:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.457123 5.2:-51034257 MS.gene73955:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.457123 5.2:-51034326 MS.gene73955:CDS
CTAAAGCTTGGCAGTTCTAA+AGG 0.461797 5.2:-51034050 MS.gene73955:CDS
ATAAACAGTGGAGGCGGTAA+TGG 0.462686 5.2:+51034638 None:intergenic
CTAAAGCTTGGCAGTTCTAA+AGG 0.463200 5.2:-51034464 MS.gene73955:CDS
CACAGAGTCGAGTGATACTT+TGG 0.463899 5.2:-51034153 MS.gene73955:CDS
CAGTTCTAAAGGCCCTGACT+TGG 0.463921 5.2:-51034384 MS.gene73955:CDS
CATCTGGCATGCAAGGAGTC+AGG 0.465776 5.2:-51034610 MS.gene73955:CDS
TGGAATCTTGACGTCGGGGC+CGG 0.466929 5.2:+51036102 None:intergenic
CTAAAGCTTGGCAGTTCTAA+AGG 0.468643 5.2:-51034395 MS.gene73955:CDS
AAAGTTTACTACTTCCCAAA+AGG 0.471184 5.2:-51036067 MS.gene73955:CDS
AGCATCACCATCAGTTGATA+CGG 0.475946 5.2:+51035895 None:intergenic
ACCACCCCTGGTCAATCCTT+GGG 0.476309 5.2:-51034786 MS.gene73955:CDS
TCATTGTCTCCTTCTTGGCC+GGG 0.483422 5.2:+51035848 None:intergenic
AGTTCTAAAGGCGCTGACTT+GGG 0.494023 5.2:-51034452 MS.gene73955:CDS
GTATAGGTGTAGACTTTGCC+TGG 0.494583 5.2:+51035689 None:intergenic
GTAGATGATGCCATGAAGAT+TGG 0.497274 5.2:-51035426 MS.gene73955:intron
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5.2:-51034107 MS.gene73955:CDS
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5.2:-51034245 MS.gene73955:CDS
AGTTCTAAAGGTGCGGACTT+GGG 0.500873 5.2:-51034314 MS.gene73955:CDS
TTCTTGGCCGGGAACTACAA+CGG 0.502400 5.2:+51035859 None:intergenic
TCGACTCTGCGCCCAAGTCA+GGG 0.505174 5.2:+51034372 None:intergenic
AGTTCTAAAGGCCCTGACTT+GGG 0.505688 5.2:-51034383 MS.gene73955:CDS
CTTGATACAGGGCTAAAGCT+TGG 0.508063 5.2:-51034545 MS.gene73955:CDS
AAGATACATCACTTGGTGCT+TGG 0.513532 5.2:+51033996 None:intergenic
GAAGGTGCTGACTTGTTCGC+AGG 0.520378 5.2:-51034584 MS.gene73955:CDS
AACTTCCCTGCAGCTGAAAG+AGG 0.520794 5.2:-51035533 MS.gene73955:intron
AAAATATGGCAGAAATGTGC+CGG 0.523405 5.2:-51036121 MS.gene73955:CDS
GCTTATACAGTGCTAAAGCT+TGG 0.524693 5.2:-51034062 MS.gene73955:CDS
GATGGTGATGCTCAAGAACC+TGG 0.527090 5.2:-51035884 MS.gene73955:CDS
TACCCCGCGGAAACCACCCC+TGG 0.529114 5.2:-51034798 MS.gene73955:CDS
TGCTAAAACGATGCATGGAA+AGG 0.529583 5.2:+51035976 None:intergenic
GCTGATACAGTGCTAAAGCT+TGG 0.530738 5.2:-51034131 MS.gene73955:CDS
GCTGATACAGGGCTAAAGCT+TGG 0.532624 5.2:-51034200 MS.gene73955:CDS
GCTGATACAGGGCTAAAGCT+TGG 0.532624 5.2:-51034269 MS.gene73955:CDS
GCTGATACAGGGCTAAAGCT+TGG 0.532624 5.2:-51034338 MS.gene73955:CDS
CAACCTCCCAAGGATTGACC+AGG 0.532831 5.2:+51034780 None:intergenic
TTGACCAGGGGTGGTTTCCG+CGG 0.532998 5.2:+51034794 None:intergenic
AAAACGATGCATGGAAAGGA+TGG 0.536509 5.2:+51035980 None:intergenic
AGGTGTAGACTTTGCCTGGA+AGG 0.536557 5.2:+51035693 None:intergenic
GCTGATACAGAGCTAAAGCT+TGG 0.537434 5.2:-51034407 MS.gene73955:CDS
GGTAATGGTGTCAGTGTGCT+TGG 0.543592 5.2:+51034653 None:intergenic
AAATATATGTCGGAATTCGC+AGG 0.543716 5.2:-51035562 MS.gene73955:CDS
CCTGATACAAGGCTAAAGCT+TGG 0.543990 5.2:-51034476 MS.gene73955:CDS
TCCCACCTCTTTCAGCTGCA+GGG 0.545840 5.2:+51035528 None:intergenic
AGTTCTAAAGGTGCGGACTT+GGG 0.546645 5.2:-51034176 MS.gene73955:CDS
TTGGTTGGAAATCTGGAATG+AGG 0.547760 5.2:-51035407 MS.gene73955:CDS
TCAACTGCTAAAACGATGCA+TGG 0.549430 5.2:+51035971 None:intergenic
CTTGGCTCATTGGACCTATG+AGG 0.550878 5.2:+51034014 None:intergenic
ATGATGCCATGAAGATTGGT+TGG 0.558711 5.2:-51035422 MS.gene73955:CDS
TCCCAAGGATTGACCAGGGG+TGG 0.559408 5.2:+51034785 None:intergenic
GTGGTACTTTGCCTGATACA+AGG 0.562508 5.2:-51034487 MS.gene73955:CDS
TGTGGAGATGTTGACAATGG+AGG 0.562566 5.2:+51034736 None:intergenic
CATCAGTTGATACGGGATTG+AGG 0.564248 5.2:+51035903 None:intergenic
ATGCAAGGAGTCAGGCAAGA+AGG 0.567091 5.2:-51034602 MS.gene73955:CDS
CTCAATCCCGTATCAACTGA+TGG 0.568504 5.2:-51035902 MS.gene73955:CDS
GCATCACCATCAGTTGATAC+GGG 0.571616 5.2:+51035896 None:intergenic
GACTTGTTCGCAGGGTCGAG+TGG 0.575371 5.2:-51034575 MS.gene73955:CDS
GGCCAAGAAGGAGACAATGA+TGG 0.575527 5.2:-51035845 MS.gene73955:CDS
AAACAGAGTAGACTAACTAA+AGG 0.575699 5.2:-51035659 MS.gene73955:CDS
GTTGATTGTGGCAGCATTAG+GGG 0.584200 5.2:+51036021 None:intergenic
CTGACTCCTTGCATGCCAGA+TGG 0.584361 5.2:+51034611 None:intergenic
ATCAAGTCTGCGCATTGACG+AGG 0.587901 5.2:+51035758 None:intergenic
TGGTTGGAAATCTGGAATGA+GGG 0.589287 5.2:-51035406 MS.gene73955:CDS
GTGGTACTTTGCTTGATACA+GGG 0.591580 5.2:-51034556 MS.gene73955:CDS
GCAAAGACCTCGTCGGTGAG+AGG 0.591642 5.2:+51035935 None:intergenic
GTGATACTTTGGCTGATACA+GGG 0.598282 5.2:-51034211 MS.gene73955:CDS
GTGATACTTTGGCTGATACA+GGG 0.598282 5.2:-51034280 MS.gene73955:CDS
GTGATACTTTGGCTGATACA+GGG 0.598282 5.2:-51034349 MS.gene73955:CDS
TATTGTGAGAGTCTTGACAT+AGG 0.600208 5.2:+51035808 None:intergenic
GCCAATGAAGATACATCACT+TGG 0.602312 5.2:+51033989 None:intergenic
TATTGTGGAGATGTTGACAA+TGG 0.604427 5.2:+51034733 None:intergenic
GTTGTAGTTCCCGGCCAAGA+AGG 0.608778 5.2:-51035857 MS.gene73955:CDS
CGATGCATGGAAAGGATGGA+CGG 0.616795 5.2:+51035984 None:intergenic
GGAGATGTTGACAATGGAGG+AGG 0.621472 5.2:+51034739 None:intergenic
CAATGGAGGAGGAAGTTGAC+GGG 0.623769 5.2:+51034750 None:intergenic
AGAGTAGACTAACTAAAGGA+TGG 0.627717 5.2:-51035655 MS.gene73955:CDS
AATCTTTGGAATCTTGACGT+CGG 0.630358 5.2:+51036096 None:intergenic
ACAATGGAGGAGGAAGTTGA+CGG 0.630475 5.2:+51034749 None:intergenic
GGGTAAACTTCAACCTCCCA+AGG 0.632620 5.2:+51034770 None:intergenic
ACCATCAAGAAAGTTGATTG+TGG 0.638655 5.2:+51036009 None:intergenic
GGGTCCAGAGGAGGTCGGTG+AGG 0.640715 5.2:+51036145 None:intergenic
AAGGTGCTGACTTGTTCGCA+GGG 0.642119 5.2:-51034583 MS.gene73955:CDS
ACCCCTGGTCAATCCTTGGG+AGG 0.647009 5.2:-51034783 MS.gene73955:CDS
AGGTCGGTGAGGAAGAGACA+TGG 0.649164 5.2:+51036156 None:intergenic
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.2:-51034114 MS.gene73955:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.2:-51034183 MS.gene73955:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.2:-51034252 MS.gene73955:CDS
GCTTGGCAGTTCTAAAGGTG+CGG 0.654753 5.2:-51034321 MS.gene73955:CDS
TCTTTGGAATCTTGACGTCG+GGG 0.665271 5.2:+51036098 None:intergenic
GACCAGGGGTGGTTTCCGCG+GGG 0.667961 5.2:+51034796 None:intergenic
GACTTGTTTGCAGAGTCGAG+TGG 0.669905 5.2:-51034506 MS.gene73955:CDS
AACCTCCCAAGGATTGACCA+GGG 0.674108 5.2:+51034781 None:intergenic
GGTTGAACCTCTCACCGACG+AGG 0.680217 5.2:-51035942 MS.gene73955:CDS
ACCTCCCAAGGATTGACCAG+GGG 0.687043 5.2:+51034782 None:intergenic
TAGTTTGGCAAAGACCTCGT+CGG 0.693646 5.2:+51035928 None:intergenic
TGAAAACAATGGAATCTTCG+GGG 0.702220 5.2:+51035603 None:intergenic
CTTGGCCGGGAACTACAACG+GGG 0.730565 5.2:+51035861 None:intergenic
GGGATGAACCTAATACCCCG+CGG 0.811140 5.2:-51034811 MS.gene73955:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGATAAAGAGATAAAAAA+TGG + chr5.2:51035319-51035338 None:intergenic 15.0%
!!! ATTTTTTATCTCTTTATCAT+AGG - chr5.2:51035318-51035337 MS.gene73955:CDS 15.0%
!!! TAAATCAATCTTGTTTATTA+TGG + chr5.2:51034954-51034973 None:intergenic 15.0%
!!! TTAAAGAATTTTGAATTTGT+CGG + chr5.2:51035483-51035502 None:intergenic 15.0%
!! ATAGTTAAATTTGAAGATTC+AGG + chr5.2:51034798-51034817 None:intergenic 20.0%
!! TCTTCAAATTTAACTATAAG+AGG - chr5.2:51034801-51034820 MS.gene73955:CDS 20.0%
!!! ATAAAATTTTGAGACTTAGT+AGG - chr5.2:51035015-51035034 MS.gene73955:intron 20.0%
!!! TAAAGAATTTTGAATTTGTC+GGG + chr5.2:51035482-51035501 None:intergenic 20.0%
! ACAATAACTGATACTAAATC+TGG - chr5.2:51034367-51034386 MS.gene73955:CDS 25.0%
! ACGTAATCTACTTACATTAA+CGG + chr5.2:51035150-51035169 None:intergenic 25.0%
! CTCTTTATCATAGGTTAAAT+GGG - chr5.2:51035327-51035346 MS.gene73955:CDS 25.0%
! GTAAATAATAATGTAGCAGA+TGG + chr5.2:51035106-51035125 None:intergenic 25.0%
! TCTCTTTATCATAGGTTAAA+TGG - chr5.2:51035326-51035345 MS.gene73955:CDS 25.0%
!! AAAGAATTTTGAATTTGTCG+GGG + chr5.2:51035481-51035500 None:intergenic 25.0%
!! AATTCCGACATATATTTTTC+CGG + chr5.2:51034593-51034612 None:intergenic 25.0%
!! AGAGTTTTTGATGAAAACAA+TGG + chr5.2:51034569-51034588 None:intergenic 25.0%
!!! GCTTTCTTATTTTGTTCTAA+TGG - chr5.2:51034896-51034915 MS.gene73955:intron 25.0%
!!! TAAACTTTAGAGTGAATCTT+TGG + chr5.2:51034079-51034098 None:intergenic 25.0%
!!! TAGTTTAGGACTTTTTATTG+TGG + chr5.2:51035443-51035462 None:intergenic 25.0%
AAACAGAGTAGACTAACTAA+AGG - chr5.2:51034499-51034518 MS.gene73955:CDS 30.0%
AAAGTTTACTACTTCCCAAA+AGG - chr5.2:51034091-51034110 MS.gene73955:CDS 30.0%
ATGAAAACAATGGAATCTTC+GGG + chr5.2:51034559-51034578 None:intergenic 30.0%
ATTCTTCTAATGTCCCTAAT+TGG - chr5.2:51034853-51034872 MS.gene73955:intron 30.0%
CCAAAATAGAGATTCTACTT+AGG + chr5.2:51035198-51035217 None:intergenic 30.0%
GATGAAAACAATGGAATCTT+CGG + chr5.2:51034560-51034579 None:intergenic 30.0%
! CCTAAGTAGAATCTCTATTT+TGG - chr5.2:51035195-51035214 MS.gene73955:intron 30.0%
! TAACTATAAGAGGTTTTCAG+CGG - chr5.2:51034811-51034830 MS.gene73955:CDS 30.0%
AAAATATGGCAGAAATGTGC+CGG - chr5.2:51034037-51034056 MS.gene73955:CDS 35.0%
AAATATATGTCGGAATTCGC+AGG - chr5.2:51034596-51034615 MS.gene73955:CDS 35.0%
AGAGTAGACTAACTAAAGGA+TGG - chr5.2:51034503-51034522 MS.gene73955:CDS 35.0%
AGATTTCCAACCAATCTTCA+TGG + chr5.2:51034745-51034764 None:intergenic 35.0%
CCAGATGGAAAAATAAACAG+TGG + chr5.2:51035535-51035554 None:intergenic 35.0%
GATGGAAAAATAAACAGTGG+AGG + chr5.2:51035532-51035551 None:intergenic 35.0%
TACAACCAATTCACATCTGT+GGG + chr5.2:51034715-51034734 None:intergenic 35.0%
TATTGTGAGAGTCTTGACAT+AGG + chr5.2:51034353-51034372 None:intergenic 35.0%
TATTGTGGAGATGTTGACAA+TGG + chr5.2:51035428-51035447 None:intergenic 35.0%
TCTGCCGGAAAAATATATGT+CGG - chr5.2:51034586-51034605 MS.gene73955:CDS 35.0%
TGAAAACAATGGAATCTTCG+GGG + chr5.2:51034558-51034577 None:intergenic 35.0%
TTTATCCCACAGATGTGAAT+TGG - chr5.2:51034707-51034726 MS.gene73955:CDS 35.0%
! AACTATAAGAGGTTTTCAGC+GGG - chr5.2:51034812-51034831 MS.gene73955:CDS 35.0%
! ACCATCAAGAAAGTTGATTG+TGG + chr5.2:51034152-51034171 None:intergenic 35.0%
! ATGAAGATTGGTTGGAAATC+TGG - chr5.2:51034744-51034763 MS.gene73955:CDS 35.0%
! CACATTTCTGCCATATTTTG+GGG + chr5.2:51034036-51034055 None:intergenic 35.0%
! CATGTTCCAAATGACCTTTT+GGG + chr5.2:51034108-51034127 None:intergenic 35.0%
! GCACATTTCTGCCATATTTT+GGG + chr5.2:51034037-51034056 None:intergenic 35.0%
! GTTTTCATCAAAAACTCTGC+CGG - chr5.2:51034571-51034590 MS.gene73955:CDS 35.0%
!! AATCTTTGGAATCTTGACGT+CGG + chr5.2:51034065-51034084 None:intergenic 35.0%
!! ACTCTGTTTTGAGTAGGTAT+AGG + chr5.2:51034488-51034507 None:intergenic 35.0%
!! CCACTGTTTATTTTTCCATC+TGG - chr5.2:51035532-51035551 MS.gene73955:intron 35.0%
!! GAAGAACTCTGAGATAGTTT+AGG + chr5.2:51035457-51035476 None:intergenic 35.0%
!! TAGTCTACTCTGTTTTGAGT+AGG + chr5.2:51034494-51034513 None:intergenic 35.0%
AAAACGATGCATGGAAAGGA+TGG + chr5.2:51034181-51034200 None:intergenic 40.0%
ACCTTAAGCATGTGCCAATT+AGG + chr5.2:51034870-51034889 None:intergenic 40.0%
AGTGATACTTTGGCTGATAC+AGG - chr5.2:51035808-51035827 MS.gene73955:CDS 40.0%
AGTGGTACTTTGCTTGATAC+AGG - chr5.2:51035601-51035620 MS.gene73955:CDS 40.0%
AGTTGATTGTGGCAGCATTA+GGG + chr5.2:51034141-51034160 None:intergenic 40.0%
ATGATGCCATGAAGATTGGT+TGG - chr5.2:51034736-51034755 MS.gene73955:CDS 40.0%
CCTTAAGCATGTGCCAATTA+GGG + chr5.2:51034869-51034888 None:intergenic 40.0%
CTACAACCAATTCACATCTG+TGG + chr5.2:51034716-51034735 None:intergenic 40.0%
CTACTTCCCAAAAGGTCATT+TGG - chr5.2:51034099-51034118 MS.gene73955:CDS 40.0%
GCCACAATCAACTTTCTTGA+TGG - chr5.2:51034148-51034167 MS.gene73955:CDS 40.0%
GCTTATACAGTGCTAAAGCT+TGG - chr5.2:51036096-51036115 MS.gene73955:CDS 40.0%
GGAAAAATAAACAGTGGAGG+CGG + chr5.2:51035529-51035548 None:intergenic 40.0%
GTAGATGATGCCATGAAGAT+TGG - chr5.2:51034732-51034751 MS.gene73955:CDS 40.0%
GTGATACTTTGGCTGATACA+GGG - chr5.2:51035809-51035828 MS.gene73955:CDS 40.0%
GTGGTACTTTGCTTGATACA+GGG - chr5.2:51035602-51035621 MS.gene73955:CDS 40.0%
TCAACTGCTAAAACGATGCA+TGG + chr5.2:51034190-51034209 None:intergenic 40.0%
TGCTAAAACGATGCATGGAA+AGG + chr5.2:51034185-51034204 None:intergenic 40.0%
TGGGAAATTAACTGAGAGTG+CGG - chr5.2:51034648-51034667 MS.gene73955:CDS 40.0%
TTCCATCATTGTCTCCTTCT+TGG + chr5.2:51034318-51034337 None:intergenic 40.0%
! AAGTTGATTGTGGCAGCATT+AGG + chr5.2:51034142-51034161 None:intergenic 40.0%
! AGCATCACCATCAGTTGATA+CGG + chr5.2:51034266-51034285 None:intergenic 40.0%
! ATTTTTCCATCTGGCATGCA+AGG - chr5.2:51035541-51035560 MS.gene73955:CDS 40.0%
! CTAAAGCTTGGCAGTTCTAA+AGG - chr5.2:51035625-51035644 MS.gene73955:CDS 40.0%
! GCATGTTCCAAATGACCTTT+TGG + chr5.2:51034109-51034128 None:intergenic 40.0%
! GGCACATTTCTGCCATATTT+TGG + chr5.2:51034038-51034057 None:intergenic 40.0%
! TGGTTGGAAATCTGGAATGA+GGG - chr5.2:51034752-51034771 MS.gene73955:CDS 40.0%
! TTGGTTGGAAATCTGGAATG+AGG - chr5.2:51034751-51034770 MS.gene73955:CDS 40.0%
!! ATCTTTGGAATCTTGACGTC+GGG + chr5.2:51034064-51034083 None:intergenic 40.0%
!! CGTTTTAGCAGTTGATCTCT+TGG - chr5.2:51034195-51034214 MS.gene73955:CDS 40.0%
ACAATGGAGGAGGAAGTTGA+CGG + chr5.2:51035412-51035431 None:intergenic 45.0%
ATAAACAGTGGAGGCGGTAA+TGG + chr5.2:51035523-51035542 None:intergenic 45.0%
ATCATTGTCTCCTTCTTGGC+CGG + chr5.2:51034314-51034333 None:intergenic 45.0%
CACAGAGTCGAGTGATACTT+TGG - chr5.2:51036005-51036024 MS.gene73955:CDS 45.0%
CCCTAATTGGCACATGCTTA+AGG - chr5.2:51034866-51034885 MS.gene73955:intron 45.0%
CCTGATACAAGGCTAAAGCT+TGG - chr5.2:51035682-51035701 MS.gene73955:CDS 45.0%
CTCAATCCCGTATCAACTGA+TGG - chr5.2:51034256-51034275 MS.gene73955:CDS 45.0%
CTTGATACAGGGCTAAAGCT+TGG - chr5.2:51035613-51035632 MS.gene73955:CDS 45.0%
GCTGATACAGAGCTAAAGCT+TGG - chr5.2:51035751-51035770 MS.gene73955:CDS 45.0%
GCTGATACAGTGCTAAAGCT+TGG - chr5.2:51036027-51036046 MS.gene73955:CDS 45.0%
GTATAGGTGTAGACTTTGCC+TGG + chr5.2:51034472-51034491 None:intergenic 45.0%
GTGGTACTTTGCCTGATACA+AGG - chr5.2:51035671-51035690 MS.gene73955:CDS 45.0%
GTTGATTGTGGCAGCATTAG+GGG + chr5.2:51034140-51034159 None:intergenic 45.0%
TAGTTTGGCAAAGACCTCGT+CGG + chr5.2:51034233-51034252 None:intergenic 45.0%
TCTTGAGACTTCTGCAACTC+TGG + chr5.2:51034430-51034449 None:intergenic 45.0%
TGTGGAGATGTTGACAATGG+AGG + chr5.2:51035425-51035444 None:intergenic 45.0%
! ATAAGAGGTTTTCAGCGGGA+GGG - chr5.2:51034816-51034835 MS.gene73955:CDS 45.0%
! ATTAACTGAGAGTGCGGTCT+TGG - chr5.2:51034654-51034673 MS.gene73955:CDS 45.0%
! CATCAGTTGATACGGGATTG+AGG + chr5.2:51034258-51034277 None:intergenic 45.0%
! GCATCACCATCAGTTGATAC+GGG + chr5.2:51034265-51034284 None:intergenic 45.0%
! GTGTTGAGTTGTTGCCTCAT+AGG - chr5.2:51036130-51036149 MS.gene73955:CDS 45.0%
! TATAAGAGGTTTTCAGCGGG+AGG - chr5.2:51034815-51034834 MS.gene73955:CDS 45.0%
! TTAACTGAGAGTGCGGTCTT+GGG - chr5.2:51034655-51034674 MS.gene73955:CDS 45.0%
!! AGTTCTAAAGGCCCTGACTT+GGG - chr5.2:51035775-51035794 MS.gene73955:CDS 45.0%
!! AGTTCTAAAGGCGCTGACTT+GGG - chr5.2:51035706-51035725 MS.gene73955:CDS 45.0%
!! AGTTCTAAAGGTGCGGACTT+GGG - chr5.2:51035844-51035863 MS.gene73955:CDS 45.0%
!! CCAAGCTTTAGCCTTGTATC+AGG + chr5.2:51035685-51035704 None:intergenic 45.0%
!! TACGGGATTGAGGACTAGTT+TGG + chr5.2:51034248-51034267 None:intergenic 45.0%
!! TCTTTGGAATCTTGACGTCG+GGG + chr5.2:51034063-51034082 None:intergenic 45.0%
AACCTCCCAAGGATTGACCA+GGG + chr5.2:51035380-51035399 None:intergenic 50.0%
AACTTCCCTGCAGCTGAAAG+AGG - chr5.2:51034625-51034644 MS.gene73955:CDS 50.0%
AGGTGTAGACTTTGCCTGGA+AGG + chr5.2:51034468-51034487 None:intergenic 50.0%
ATGCAAGGAGTCAGGCAAGA+AGG - chr5.2:51035556-51035575 MS.gene73955:CDS 50.0%
CAATGGAGGAGGAAGTTGAC+GGG + chr5.2:51035411-51035430 None:intergenic 50.0%
CGATGCATGGAAAGGATGGA+CGG + chr5.2:51034177-51034196 None:intergenic 50.0%
CGCAGAGTCGACTGATACTT+TGG - chr5.2:51035729-51035748 MS.gene73955:CDS 50.0%
CGCAGAGTCGAGTGATACTT+TGG - chr5.2:51035798-51035817 MS.gene73955:CDS 50.0%
CTCCTCTGGACCCCAAAATA+TGG - chr5.2:51034023-51034042 MS.gene73955:CDS 50.0%
CTTGGCTCATTGGACCTATG+AGG + chr5.2:51036147-51036166 None:intergenic 50.0%
GAGGGCAAAGCTTCGTTTGA+TGG - chr5.2:51034770-51034789 MS.gene73955:CDS 50.0%
GCTGATACAGGGCTAAAGCT+TGG - chr5.2:51035820-51035839 MS.gene73955:CDS 50.0%
GGAGATGTTGACAATGGAGG+AGG + chr5.2:51035422-51035441 None:intergenic 50.0%
GGCCAAGAAGGAGACAATGA+TGG - chr5.2:51034313-51034332 MS.gene73955:CDS 50.0%
GGGTAAACTTCAACCTCCCA+AGG + chr5.2:51035391-51035410 None:intergenic 50.0%
TCATTGTCTCCTTCTTGGCC+GGG + chr5.2:51034313-51034332 None:intergenic 50.0%
TTCTTGGCCGGGAACTACAA+CGG + chr5.2:51034302-51034321 None:intergenic 50.0%
! ATCAAGTCTGCGCATTGACG+AGG + chr5.2:51034403-51034422 None:intergenic 50.0%
! GACTTGTTTGCAGAGTCGAG+TGG - chr5.2:51035652-51035671 MS.gene73955:CDS 50.0%
! GATGGTGATGCTCAAGAACC+TGG - chr5.2:51034274-51034293 MS.gene73955:CDS 50.0%
! GGTAATGGTGTCAGTGTGCT+TGG + chr5.2:51035508-51035527 None:intergenic 50.0%
! TAAGAGGTTTTCAGCGGGAG+GGG - chr5.2:51034817-51034836 MS.gene73955:CDS 50.0%
!! AAGGTGCTGACTTGTTCGCA+GGG - chr5.2:51035575-51035594 MS.gene73955:CDS 50.0%
!! CAGTTCTAAAGGCCCTGACT+TGG - chr5.2:51035774-51035793 MS.gene73955:CDS 50.0%
!! CAGTTCTAAAGGCGCTGACT+TGG - chr5.2:51035705-51035724 MS.gene73955:CDS 50.0%
!! CAGTTCTAAAGGTGCGGACT+TGG - chr5.2:51035843-51035862 MS.gene73955:CDS 50.0%
!! GCTTGGCAGTTCTAAAGGTG+CGG - chr5.2:51035837-51035856 MS.gene73955:CDS 50.0%
!! TCACTTGGTGCTTGGCTCAT+TGG + chr5.2:51036157-51036176 None:intergenic 50.0%
!!! CATATTTTGGGGTCCAGAGG+AGG + chr5.2:51034025-51034044 None:intergenic 50.0%
!!! TGCCATATTTTGGGGTCCAG+AGG + chr5.2:51034028-51034047 None:intergenic 50.0%
AACCACCCCTGGTCAATCCT+TGG - chr5.2:51035371-51035390 MS.gene73955:CDS 55.0%
ACCACCCCTGGTCAATCCTT+GGG - chr5.2:51035372-51035391 MS.gene73955:CDS 55.0%
ACCTCCCAAGGATTGACCAG+GGG + chr5.2:51035379-51035398 None:intergenic 55.0%
CAACCTCCCAAGGATTGACC+AGG + chr5.2:51035381-51035400 None:intergenic 55.0%
CATCTGGCATGCAAGGAGTC+AGG - chr5.2:51035548-51035567 MS.gene73955:CDS 55.0%
CTGACTCCTTGCATGCCAGA+TGG + chr5.2:51035550-51035569 None:intergenic 55.0%
GGGATGAACCTAATACCCCG+CGG - chr5.2:51035347-51035366 MS.gene73955:CDS 55.0%
GTCTCTGTCACTGACCTTCC+AGG - chr5.2:51034451-51034470 MS.gene73955:CDS 55.0%
GTTGTAGTTCCCGGCCAAGA+AGG - chr5.2:51034301-51034320 MS.gene73955:CDS 55.0%
TCCCACCTCTTTCAGCTGCA+GGG + chr5.2:51034633-51034652 None:intergenic 55.0%
TCCCTGCAGCTGAAAGAGGT+GGG - chr5.2:51034629-51034648 MS.gene73955:CDS 55.0%
TCTTGGCCGGGAACTACAAC+GGG + chr5.2:51034301-51034320 None:intergenic 55.0%
TTCCCACCTCTTTCAGCTGC+AGG + chr5.2:51034634-51034653 None:intergenic 55.0%
TTCCCTGCAGCTGAAAGAGG+TGG - chr5.2:51034628-51034647 MS.gene73955:CDS 55.0%
! GGTCTTGGGTGCAGTGGATT+TGG - chr5.2:51034669-51034688 MS.gene73955:CDS 55.0%
!! GAAGGTGCTGACTTGTTCGC+AGG - chr5.2:51035574-51035593 MS.gene73955:CDS 55.0%
!!! TTTTGGGGTCCAGAGGAGGT+CGG + chr5.2:51034021-51034040 None:intergenic 55.0%
ACCCCTGGTCAATCCTTGGG+AGG - chr5.2:51035375-51035394 MS.gene73955:CDS 60.0%
CTTGGCCGGGAACTACAACG+GGG + chr5.2:51034300-51034319 None:intergenic 60.0%
GCAAAGACCTCGTCGGTGAG+AGG + chr5.2:51034226-51034245 None:intergenic 60.0%
GGTTGAACCTCTCACCGACG+AGG - chr5.2:51034216-51034235 MS.gene73955:CDS 60.0%
TCCCAAGGATTGACCAGGGG+TGG + chr5.2:51035376-51035395 None:intergenic 60.0%
TCGACTCTGCGCCCAAGTCA+GGG + chr5.2:51035720-51035739 None:intergenic 60.0%
TCTTCCTCACCGACCTCCTC+TGG - chr5.2:51034009-51034028 MS.gene73955:CDS 60.0%
TGGAATCTTGACGTCGGGGC+CGG + chr5.2:51034059-51034078 None:intergenic 60.0%
TTGACCAGGGGTGGTTTCCG+CGG + chr5.2:51035367-51035386 None:intergenic 60.0%
! GACTTGTTCGCAGGGTCGAG+TGG - chr5.2:51035583-51035602 MS.gene73955:CDS 60.0%
! GGTGGTTTCCGCGGGGTATT+AGG + chr5.2:51035358-51035377 None:intergenic 60.0%
CCTGGCCCCGTTGTAGTTCC+CGG - chr5.2:51034292-51034311 MS.gene73955:CDS 65.0%
CTCGACTCTGCGCCCAAGTC+AGG + chr5.2:51035790-51035809 None:intergenic 65.0%
GAGTGCGGTCTTGGGTGCAG+TGG - chr5.2:51034663-51034682 MS.gene73955:CDS 65.0%
TGACCAGGGGTGGTTTCCGC+GGG + chr5.2:51035366-51035385 None:intergenic 65.0%
CCGGGAACTACAACGGGGCC+AGG + chr5.2:51034295-51034314 None:intergenic 70.0%
GACCAGGGGTGGTTTCCGCG+GGG + chr5.2:51035365-51035384 None:intergenic 70.0%
GGGTCCAGAGGAGGTCGGTG+AGG + chr5.2:51034016-51034035 None:intergenic 70.0%
TACCCCGCGGAAACCACCCC+TGG - chr5.2:51035360-51035379 MS.gene73955:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 51034004 51036176 51034004 ID=MS.gene73955
chr5.2 mRNA 51034004 51036176 51034004 ID=MS.gene73955.t1;Parent=MS.gene73955
chr5.2 exon 51035534 51036176 51035534 ID=MS.gene73955.t1.exon1;Parent=MS.gene73955.t1
chr5.2 CDS 51035534 51036176 51035534 ID=cds.MS.gene73955.t1;Parent=MS.gene73955.t1
chr5.2 exon 51035293 51035444 51035293 ID=MS.gene73955.t1.exon2;Parent=MS.gene73955.t1
chr5.2 CDS 51035293 51035444 51035293 ID=cds.MS.gene73955.t1;Parent=MS.gene73955.t1
chr5.2 exon 51034004 51034840 51034004 ID=MS.gene73955.t1.exon3;Parent=MS.gene73955.t1
chr5.2 CDS 51034004 51034840 51034004 ID=cds.MS.gene73955.t1;Parent=MS.gene73955.t1
Gene Sequence

>MS.gene73955

ATGTCTCTTCCTCACCGACCTCCTCTGGACCCCAAAATATGGCAGAAATGTGCCGGCCCCGACGTCAAGATTCCAAAGATTCACTCTAAAGTTTACTACTTCCCAAAAGGTCATTTGGAACATGCATGTTCTTCCCCTAATGCTGCCACAATCAACTTTCTTGATGGTTACCGTCCATCCTTTCCATGCATCGTTTTAGCAGTTGATCTCTTGGTTGAACCTCTCACCGACGAGGTCTTTGCCAAACTAGTCCTCAATCCCGTATCAACTGATGGTGATGCTCAAGAACCTGGCCCCGTTGTAGTTCCCGGCCAAGAAGGAGACAATGATGGAAACAATCTTGCTTCCTATGTCAAGACTCTCACAATAACTGATACTAAATCTGGATTCAATATGCCTCGTCAATGCGCAGACTTGATCTTTCCAGAGTTGCAGAAGTCTCAAGAAGTCTCTGTCACTGACCTTCCAGGCAAAGTCTACACCTATACCTACTCAAAACAGAGTAGACTAACTAAAGGATGGTTTAATTTTGTAAGTGAGAAGAAACTCGTCCCCGAAGATTCCATTGTTTTCATCAAAAACTCTGCCGGAAAAATATATGTCGGAATTCGCAGGAACACTAACTTCCCTGCAGCTGAAAGAGGTGGGAAATTAACTGAGAGTGCGGTCTTGGGTGCAGTGGATTTGGCGTTTGAAGTTTTGTTTTATCCCACAGATGTGAATTGGTTGTAGATGATGCCATGAAGATTGGTTGGAAATCTGGAATGAGGGCAAAGCTTCGTTTGATGGAACCTGAATCTTCAAATTTAACTATAAGAGGTTTTCAGCGGGAGGGGACAATCTCTAATGATTCTTCTAATGTCCCTAATTGGCACATGCTTAAGGTACTTATGCTTTCTTATTTTGTTCTAATGGTATTTCAATTGCATATTGTTATCAAGTTGAATCCATAATAAACAAGATTGATTTAGATATTAAAGCTATAATTAGATGATTCTTGATGAAATAGATATAAAATTTTGAGACTTAGTAGGTTGCTACTGTTTTGAATGTCAAATGTAATTCTAAAATTAAGAAACACAAAATCATTACAGAATATCCATCTGCTACATTATTATTTACATTGTTCTTGATATCTCATGACCGTTAATGTAAGTAGATTACGTTTTAGAATCAATTGTTTGTATCACACCTAAGTAGAATCTCTATTTTGGCTCATGTTATTAATTGTTATGAAACTTATTAATTGATGTCTAAATACATATATATATACACTAAGTTATCAAATATTTCAAATTATTGATATTGATTACCATTTTTTATCTCTTTATCATAGGTTAAATGGGATGAACCTAATACCCCGCGGAAACCACCCCTGGTCAATCCTTGGGAGGTTGAAGTTTACCCGTCAACTTCCTCCTCCATTGTCAACATCTCCACAATAAAAAGTCCTAAACTATCTCAGAGTTCTTCTCCCCGACAAATTCAAAATTCTTTAATGCCAAGCACACTGACACCATTACCGCCTCCACTGTTTATTTTTCCATCTGGCATGCAAGGAGTCAGGCAAGAAGGTGCTGACTTGTTCGCAGGGTCGAGTGGTACTTTGCTTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGATGCTGACTTGTTTGCAGAGTCGAGTGGTACTTTGCCTGATACAAGGCTAAAGCTTGGCAGTTCTAAAGGCGCTGACTTGGGCGCAGAGTCGACTGATACTTTGGCTGATACAGAGCTAAAGCTTGGCAGTTCTAAAGGCCCTGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTGATACAGGGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCACAGAGTCGAGTGATACTTTGGCTGATACAGTGCTAAAGCTTGGCAGTTCTAAAGGTGCGGACTTGGGCGCAGAGTCGAGTGATACTTTGGCTTATACAGTGCTAAAGCTTGGCAGTTCTAAAGGTGTTGAGTTGTTGCCTCATAGGTCCAATGAGCCAAGCACCAAGTGA
Protein sequence

>MS.gene73955.t1

MSLPHRPPLDPKIWQKCAGPDVKIPKIHSKVYYFPKGHLEHACSSPNAATINFLDGYRPSFPCIVLAVDLLVEPLTDEVFAKLVLNPVSTDGDAQEPGPVVVPGQEGDNDGNNLASYVKTLTITDTKSGFNMPRQCADLIFPELQKSQEVSVTDLPGKVYTYTYSKQSRLTKGWFNFVSEKKLVPEDSIVFIKNSAGKIYVGIRRNTNFPAAERDDAMKIGWKSGMRAKLRLMEPESSNLTIRGFQREGTISNDSSNVPNWHMLKVKWDEPNTPRKPPLVNPWEVEVYPSTSSSIVNISTIKSPKLSQSSSPRQIQNSLMPSTLTPLPPPLFIFPSGMQGVRQEGADLFAGSSGTLLDTGLKLGSSKDADLFAESSGTLPDTRLKLGSSKGADLGAESTDTLADTELKLGSSKGPDLGAESSDTLADTGLKLGSSKGADLGAESSDTLADTGLKLGSSKGADLGAESSDTLADTGLKLGSSKGADLGTESSDTLADTVLKLGSSKGADLGAESSDTLAYTVLKLGSSKGVELLPHRSNEPSTK