Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73956.t1 | AES97839.1 | 62.5 | 344 | 23 | 4 | 8 | 290 | 17 | 315 | 3.20E-84 | 322 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73956.t1 | Q84WU6 | 29.0 | 255 | 141 | 5 | 10 | 225 | 75 | 328 | 2.6e-21 | 104.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73956.t1 | G7K9Z0 | 62.5 | 344 | 23 | 4 | 8 | 290 | 17 | 315 | 2.3e-84 | 322.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene73956.t1 | TF | B3-ARF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73956.t1 | MTR_5g060770 | 57.971 | 345 | 37 | 7 | 8 | 290 | 17 | 315 | 8.15e-109 | 321 |
MS.gene73956.t1 | MTR_5g060780 | 67.063 | 252 | 70 | 5 | 8 | 254 | 71 | 314 | 1.12e-102 | 307 |
MS.gene73956.t1 | MTR_5g460920 | 67.063 | 252 | 70 | 5 | 8 | 254 | 71 | 314 | 6.90e-102 | 305 |
MS.gene73956.t1 | MTR_5g061890 | 65.873 | 252 | 73 | 5 | 8 | 254 | 71 | 314 | 3.55e-100 | 301 |
MS.gene73956.t1 | MTR_5g460910 | 50.435 | 345 | 41 | 8 | 8 | 290 | 34 | 310 | 3.83e-84 | 258 |
MS.gene73956.t1 | MTR_5g060630 | 52.000 | 275 | 98 | 8 | 13 | 254 | 76 | 349 | 1.79e-77 | 246 |
MS.gene73956.t1 | MTR_5g060630 | 68.657 | 67 | 21 | 0 | 253 | 319 | 439 | 505 | 1.98e-20 | 92.4 |
MS.gene73956.t1 | MTR_5g460740 | 52.000 | 275 | 98 | 8 | 13 | 254 | 76 | 349 | 1.79e-77 | 246 |
MS.gene73956.t1 | MTR_5g460740 | 68.657 | 67 | 21 | 0 | 253 | 319 | 439 | 505 | 1.98e-20 | 92.4 |
MS.gene73956.t1 | MTR_5g061220 | 45.029 | 342 | 126 | 13 | 8 | 303 | 78 | 403 | 6.99e-70 | 227 |
MS.gene73956.t1 | MTR_1g058210 | 49.421 | 259 | 107 | 9 | 8 | 254 | 71 | 317 | 1.85e-60 | 200 |
MS.gene73956.t1 | MTR_5g040740 | 44.106 | 263 | 111 | 11 | 8 | 254 | 71 | 313 | 1.21e-51 | 176 |
MS.gene73956.t1 | MTR_5g040880 | 39.117 | 317 | 158 | 11 | 8 | 305 | 70 | 370 | 2.74e-50 | 175 |
MS.gene73956.t1 | MTR_2g024430 | 34.000 | 400 | 164 | 15 | 8 | 332 | 80 | 454 | 6.06e-48 | 169 |
MS.gene73956.t1 | MTR_2g006270 | 36.676 | 349 | 151 | 14 | 8 | 302 | 74 | 406 | 5.93e-47 | 165 |
MS.gene73956.t1 | MTR_5g062960 | 51.111 | 180 | 49 | 4 | 168 | 309 | 1 | 179 | 1.32e-45 | 154 |
MS.gene73956.t1 | MTR_5g082140 | 34.160 | 363 | 157 | 12 | 8 | 303 | 71 | 418 | 1.62e-44 | 158 |
MS.gene73956.t1 | MTR_2g006380 | 35.549 | 346 | 152 | 13 | 8 | 302 | 81 | 406 | 5.58e-43 | 154 |
MS.gene73956.t1 | MTR_3g073420 | 35.461 | 282 | 118 | 10 | 8 | 240 | 76 | 342 | 5.45e-33 | 129 |
MS.gene73956.t1 | MTR_1g064430 | 30.741 | 270 | 132 | 8 | 8 | 225 | 96 | 362 | 3.93e-25 | 106 |
MS.gene73956.t1 | MTR_1g064430 | 30.741 | 270 | 132 | 8 | 8 | 225 | 83 | 349 | 4.03e-25 | 106 |
MS.gene73956.t1 | MTR_5g062970 | 44.138 | 145 | 57 | 5 | 8 | 137 | 94 | 229 | 2.79e-24 | 99.4 |
MS.gene73956.t1 | MTR_2g094570 | 29.066 | 289 | 131 | 10 | 8 | 240 | 67 | 337 | 8.93e-23 | 99.4 |
MS.gene73956.t1 | MTR_2g094570 | 29.066 | 289 | 131 | 10 | 8 | 240 | 67 | 337 | 1.09e-22 | 99.4 |
MS.gene73956.t1 | MTR_2g094570 | 29.066 | 289 | 131 | 10 | 8 | 240 | 123 | 393 | 1.39e-22 | 99.0 |
MS.gene73956.t1 | MTR_1g094960 | 29.514 | 288 | 131 | 10 | 8 | 240 | 74 | 344 | 5.77e-22 | 97.1 |
MS.gene73956.t1 | MTR_4g058930 | 30.705 | 241 | 108 | 8 | 55 | 240 | 108 | 344 | 2.43e-21 | 95.5 |
MS.gene73956.t1 | MTR_4g058930 | 30.705 | 241 | 108 | 8 | 55 | 240 | 108 | 344 | 3.43e-21 | 94.7 |
MS.gene73956.t1 | MTR_7g101275 | 28.731 | 268 | 145 | 10 | 13 | 254 | 53 | 300 | 2.59e-20 | 91.3 |
MS.gene73956.t1 | MTR_2g018690 | 30.258 | 271 | 142 | 12 | 6 | 251 | 83 | 331 | 2.89e-18 | 86.3 |
MS.gene73956.t1 | MTR_8g079492 | 28.625 | 269 | 149 | 11 | 6 | 251 | 82 | 330 | 7.02e-17 | 82.0 |
MS.gene73956.t1 | MTR_8g079492 | 28.625 | 269 | 149 | 11 | 6 | 251 | 82 | 330 | 7.22e-17 | 82.0 |
MS.gene73956.t1 | MTR_8g079492 | 28.571 | 266 | 147 | 11 | 9 | 251 | 3 | 248 | 8.62e-17 | 81.6 |
MS.gene73956.t1 | MTR_0041s0120 | 27.957 | 279 | 145 | 11 | 13 | 254 | 53 | 312 | 8.95e-17 | 80.9 |
MS.gene73956.t1 | MTR_7g101280 | 25.649 | 308 | 136 | 10 | 13 | 250 | 92 | 376 | 9.50e-17 | 81.6 |
MS.gene73956.t1 | MTR_0041s0110 | 25.649 | 308 | 136 | 10 | 13 | 250 | 92 | 376 | 9.50e-17 | 81.6 |
MS.gene73956.t1 | MTR_3g064050 | 29.915 | 234 | 142 | 9 | 6 | 225 | 86 | 311 | 1.14e-16 | 81.3 |
MS.gene73956.t1 | MTR_5g076270 | 29.183 | 257 | 140 | 10 | 6 | 240 | 84 | 320 | 1.54e-16 | 80.9 |
MS.gene73956.t1 | MTR_2g005240 | 28.800 | 250 | 148 | 8 | 13 | 247 | 89 | 323 | 5.65e-16 | 79.3 |
MS.gene73956.t1 | MTR_2g014770 | 27.027 | 185 | 122 | 5 | 56 | 228 | 158 | 341 | 1.47e-15 | 77.8 |
MS.gene73956.t1 | MTR_2g043250 | 26.957 | 230 | 145 | 6 | 9 | 224 | 85 | 305 | 1.75e-15 | 77.8 |
MS.gene73956.t1 | MTR_2g014770 | 27.027 | 185 | 122 | 5 | 56 | 228 | 158 | 341 | 1.89e-15 | 77.4 |
MS.gene73956.t1 | MTR_7g062540 | 27.615 | 239 | 145 | 8 | 13 | 237 | 80 | 304 | 2.83e-15 | 77.0 |
MS.gene73956.t1 | MTR_4g124900 | 26.522 | 230 | 146 | 6 | 9 | 224 | 85 | 305 | 3.42e-15 | 77.0 |
MS.gene73956.t1 | MTR_4g124900 | 26.522 | 230 | 146 | 6 | 9 | 224 | 85 | 305 | 3.44e-15 | 77.0 |
MS.gene73956.t1 | MTR_4g088210 | 26.486 | 185 | 123 | 5 | 56 | 228 | 148 | 331 | 4.07e-15 | 76.6 |
MS.gene73956.t1 | MTR_4g088210 | 26.486 | 185 | 123 | 5 | 56 | 228 | 148 | 331 | 4.57e-15 | 76.6 |
MS.gene73956.t1 | MTR_4g021580 | 27.574 | 272 | 156 | 11 | 13 | 268 | 85 | 331 | 4.99e-15 | 76.3 |
MS.gene73956.t1 | MTR_4g021580 | 27.574 | 272 | 156 | 11 | 13 | 268 | 85 | 331 | 5.42e-15 | 76.3 |
MS.gene73956.t1 | MTR_2g093740 | 29.648 | 199 | 119 | 6 | 46 | 224 | 20 | 217 | 7.12e-14 | 72.8 |
MS.gene73956.t1 | MTR_2g093740 | 29.648 | 199 | 119 | 6 | 46 | 224 | 150 | 347 | 8.96e-14 | 72.4 |
MS.gene73956.t1 | MTR_2g093740 | 29.648 | 199 | 119 | 6 | 46 | 224 | 20 | 217 | 9.45e-14 | 72.4 |
MS.gene73956.t1 | MTR_2g093740 | 29.648 | 199 | 119 | 6 | 46 | 224 | 150 | 347 | 1.00e-13 | 72.4 |
MS.gene73956.t1 | MTR_2g093740 | 29.648 | 199 | 119 | 6 | 46 | 224 | 150 | 347 | 1.29e-13 | 72.0 |
MS.gene73956.t1 | MTR_4g060460 | 29.570 | 186 | 118 | 5 | 56 | 229 | 166 | 350 | 1.59e-13 | 72.0 |
MS.gene73956.t1 | MTR_4g060460 | 29.570 | 186 | 118 | 5 | 56 | 229 | 166 | 350 | 1.87e-13 | 71.6 |
MS.gene73956.t1 | MTR_8g100050 | 26.496 | 234 | 141 | 7 | 13 | 228 | 125 | 345 | 5.10e-13 | 70.5 |
MS.gene73956.t1 | MTR_8g100050 | 26.496 | 234 | 141 | 7 | 13 | 228 | 125 | 345 | 5.72e-13 | 70.1 |
MS.gene73956.t1 | MTR_8g101360 | 31.481 | 162 | 83 | 5 | 6 | 151 | 91 | 240 | 9.92e-13 | 69.7 |
MS.gene73956.t1 | MTR_1g024025 | 27.755 | 245 | 138 | 11 | 6 | 228 | 103 | 330 | 2.42e-12 | 68.6 |
MS.gene73956.t1 | MTR_8g027440 | 26.693 | 251 | 159 | 8 | 13 | 251 | 95 | 332 | 4.99e-12 | 67.4 |
MS.gene73956.t1 | MTR_8g446900 | 27.119 | 177 | 114 | 5 | 55 | 217 | 61 | 236 | 2.76e-11 | 64.3 |
MS.gene73956.t1 | MTR_2g093740 | 27.358 | 212 | 120 | 6 | 46 | 224 | 20 | 230 | 7.53e-11 | 63.5 |
MS.gene73956.t1 | MTR_2g093740 | 27.358 | 212 | 120 | 6 | 46 | 224 | 150 | 360 | 8.34e-11 | 63.5 |
MS.gene73956.t1 | MTR_2g093740 | 27.358 | 212 | 120 | 6 | 46 | 224 | 20 | 230 | 8.88e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73956.t1 | AT1G77850 | 30.797 | 276 | 144 | 8 | 8 | 242 | 73 | 342 | 5.76e-29 | 117 |
MS.gene73956.t1 | AT1G77850 | 30.797 | 276 | 144 | 8 | 8 | 242 | 73 | 342 | 5.79e-29 | 117 |
MS.gene73956.t1 | AT4G30080 | 30.872 | 298 | 146 | 12 | 8 | 254 | 74 | 362 | 3.09e-23 | 100 |
MS.gene73956.t1 | AT2G28350 | 29.139 | 302 | 133 | 12 | 3 | 240 | 59 | 343 | 5.72e-23 | 100 |
MS.gene73956.t1 | AT2G28350 | 29.139 | 302 | 133 | 12 | 3 | 240 | 59 | 343 | 5.91e-23 | 100 |
MS.gene73956.t1 | AT1G30330 | 31.197 | 234 | 139 | 9 | 6 | 225 | 83 | 308 | 5.17e-19 | 88.6 |
MS.gene73956.t1 | AT1G30330 | 31.197 | 234 | 139 | 9 | 6 | 225 | 85 | 310 | 5.89e-19 | 88.6 |
MS.gene73956.t1 | AT1G30330 | 31.197 | 234 | 139 | 9 | 6 | 225 | 85 | 310 | 5.89e-19 | 88.6 |
MS.gene73956.t1 | AT5G37020 | 28.253 | 269 | 150 | 11 | 6 | 251 | 82 | 330 | 9.97e-18 | 84.7 |
MS.gene73956.t1 | AT5G37020 | 28.253 | 269 | 150 | 11 | 6 | 251 | 82 | 330 | 1.05e-17 | 84.7 |
MS.gene73956.t1 | AT1G59750 | 28.063 | 253 | 152 | 9 | 13 | 251 | 88 | 324 | 1.23e-17 | 84.3 |
MS.gene73956.t1 | AT1G59750 | 28.063 | 253 | 152 | 9 | 13 | 251 | 88 | 324 | 1.30e-17 | 84.3 |
MS.gene73956.t1 | AT1G59750 | 28.063 | 253 | 152 | 9 | 13 | 251 | 88 | 324 | 1.41e-17 | 84.0 |
MS.gene73956.t1 | AT1G59750 | 28.063 | 253 | 152 | 9 | 13 | 251 | 88 | 324 | 1.41e-17 | 84.0 |
MS.gene73956.t1 | AT2G33860 | 29.474 | 190 | 113 | 7 | 56 | 229 | 2 | 186 | 1.85e-16 | 80.5 |
MS.gene73956.t1 | AT5G62000 | 27.311 | 238 | 142 | 7 | 9 | 228 | 123 | 347 | 2.26e-16 | 80.5 |
MS.gene73956.t1 | AT5G62000 | 27.311 | 238 | 142 | 7 | 9 | 228 | 123 | 347 | 2.27e-16 | 80.5 |
MS.gene73956.t1 | AT5G62000 | 27.311 | 238 | 142 | 7 | 9 | 228 | 123 | 347 | 2.27e-16 | 80.5 |
MS.gene73956.t1 | AT5G62000 | 27.311 | 238 | 142 | 7 | 9 | 228 | 123 | 347 | 2.27e-16 | 80.5 |
MS.gene73956.t1 | AT5G62000 | 27.311 | 238 | 142 | 7 | 9 | 228 | 123 | 347 | 2.27e-16 | 80.5 |
MS.gene73956.t1 | AT2G33860 | 29.474 | 190 | 113 | 7 | 56 | 229 | 159 | 343 | 2.87e-16 | 80.1 |
MS.gene73956.t1 | AT2G46530 | 28.761 | 226 | 135 | 7 | 13 | 224 | 88 | 301 | 4.63e-16 | 79.3 |
MS.gene73956.t1 | AT2G46530 | 28.761 | 226 | 135 | 7 | 13 | 224 | 109 | 322 | 4.86e-16 | 79.3 |
MS.gene73956.t1 | AT5G37020 | 28.767 | 219 | 119 | 9 | 56 | 251 | 31 | 235 | 2.63e-15 | 77.4 |
MS.gene73956.t1 | AT3G61830 | 28.319 | 226 | 136 | 8 | 13 | 224 | 41 | 254 | 4.80e-15 | 76.3 |
MS.gene73956.t1 | AT3G61830 | 28.319 | 226 | 136 | 8 | 13 | 224 | 92 | 305 | 5.13e-15 | 76.3 |
MS.gene73956.t1 | AT4G23980 | 26.613 | 248 | 158 | 8 | 13 | 250 | 79 | 312 | 6.91e-14 | 72.8 |
MS.gene73956.t1 | AT4G23980 | 26.613 | 248 | 158 | 8 | 13 | 250 | 79 | 312 | 7.28e-14 | 72.8 |
MS.gene73956.t1 | AT1G34310 | 27.308 | 260 | 153 | 9 | 9 | 254 | 89 | 326 | 8.33e-14 | 72.8 |
MS.gene73956.t1 | AT1G34390 | 26.744 | 258 | 155 | 8 | 9 | 254 | 89 | 324 | 8.85e-14 | 72.4 |
MS.gene73956.t1 | AT5G20730 | 27.826 | 230 | 142 | 7 | 9 | 223 | 86 | 306 | 1.44e-13 | 72.4 |
MS.gene73956.t1 | AT5G20730 | 27.826 | 230 | 142 | 7 | 9 | 223 | 86 | 306 | 1.69e-13 | 72.0 |
MS.gene73956.t1 | AT5G20730 | 28.261 | 230 | 140 | 8 | 9 | 223 | 86 | 305 | 2.26e-13 | 71.6 |
MS.gene73956.t1 | AT1G34410 | 25.979 | 281 | 166 | 10 | 9 | 275 | 89 | 341 | 2.59e-13 | 71.2 |
MS.gene73956.t1 | AT1G19220 | 32.911 | 158 | 70 | 6 | 9 | 146 | 85 | 226 | 7.90e-13 | 70.1 |
MS.gene73956.t1 | AT5G60450 | 27.184 | 206 | 124 | 8 | 45 | 229 | 136 | 336 | 3.31e-12 | 67.8 |
MS.gene73956.t1 | AT2G46530 | 28.000 | 200 | 121 | 7 | 39 | 224 | 24 | 214 | 3.32e-12 | 67.8 |
MS.gene73956.t1 | AT5G60450 | 27.184 | 206 | 124 | 8 | 45 | 229 | 160 | 360 | 3.44e-12 | 67.8 |
MS.gene73956.t1 | AT1G19850 | 31.788 | 151 | 87 | 5 | 6 | 146 | 114 | 258 | 4.80e-12 | 67.4 |
MS.gene73956.t1 | AT1G35540 | 25.769 | 260 | 157 | 9 | 9 | 254 | 89 | 326 | 4.90e-12 | 67.4 |
MS.gene73956.t1 | AT1G19850 | 31.788 | 151 | 87 | 5 | 6 | 146 | 103 | 247 | 5.24e-12 | 67.4 |
MS.gene73956.t1 | AT1G35240 | 25.623 | 281 | 167 | 10 | 9 | 275 | 89 | 341 | 1.10e-11 | 66.2 |
Find 76 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCCTCTTTCACCTGTTTC+AGG | 0.082511 | 5.2:-51053214 | None:intergenic |
CATGAAAACAACAGAATCTT+TGG | 0.216238 | 5.2:-51053134 | None:intergenic |
TTGAAGATTGGTTGGGAATC+TGG | 0.232457 | 5.2:+51053370 | MS.gene73956:CDS |
AAGGATCCCATTGTTGAATT+AGG | 0.252137 | 5.2:-51054293 | None:intergenic |
ATTCTTCCAATGTCCCTAAT+TGG | 0.255553 | 5.2:+51053485 | MS.gene73956:CDS |
TGTTTCCATCGTCGTCTTCT+TGG | 0.258015 | 5.2:-51052892 | None:intergenic |
ACCTCAAGAATGTGCCAATT+AGG | 0.262799 | 5.2:-51053499 | None:intergenic |
CCTCCTCCTCCTGTTATTCC+TGG | 0.298255 | 5.2:+51052869 | MS.gene73956:CDS |
CTTTCACCTGTTTCAGGTGC+AGG | 0.315580 | 5.2:-51053208 | None:intergenic |
GGCAAGAAGTCAGCTGATTT+AGG | 0.320028 | 5.2:-51054497 | None:intergenic |
GACTTCACCAAGTCAAGCTT+TGG | 0.363368 | 5.2:-51052998 | None:intergenic |
AGGAGAAGGAGGAGGATCTT+GGG | 0.379070 | 5.2:-51052837 | None:intergenic |
GAGGAGAAGGAGGAGGATCT+TGG | 0.384725 | 5.2:-51052838 | None:intergenic |
CCTCAAGAATGTGCCAATTA+GGG | 0.384917 | 5.2:-51053498 | None:intergenic |
TATCAGAATCCAACCATGTT+TGG | 0.389045 | 5.2:-51054319 | None:intergenic |
AAGAATCTGATATAGATAAA+TGG | 0.391533 | 5.2:-51054376 | None:intergenic |
TCTTCTTGGCCAGGAATAAC+AGG | 0.405708 | 5.2:-51052878 | None:intergenic |
CAGCTGGCATTCAGGGAGCC+AGG | 0.407830 | 5.2:+51054348 | MS.gene73956:CDS |
AACTTCCCTGCACCTGAAAC+AGG | 0.412486 | 5.2:+51053202 | MS.gene73956:CDS |
GGAGGATCTTGGGCAGTTAC+CGG | 0.415046 | 5.2:-51052827 | None:intergenic |
CCATCGTCGTCTTCTTGGCC+AGG | 0.419252 | 5.2:-51052887 | None:intergenic |
CGACCTTAAAAGCCAAGAAT+GGG | 0.432454 | 5.2:+51053039 | MS.gene73956:CDS |
GGAATAACAGGAGGAGGAGG+AGG | 0.433203 | 5.2:-51052866 | None:intergenic |
AGTACAATGGCAGGGTTTAG+TGG | 0.442032 | 5.2:+51054440 | MS.gene73956:CDS |
ATCCAACCATGTTTGGTTCA+AGG | 0.448487 | 5.2:-51054312 | None:intergenic |
GGAGGAGGAGGAGAAGGAGG+AGG | 0.448759 | 5.2:-51052845 | None:intergenic |
GTAGATGATTCCTTGAAGAT+TGG | 0.454151 | 5.2:+51053358 | MS.gene73956:CDS |
ATCGGGAACAGTACAATGGC+AGG | 0.465455 | 5.2:+51054431 | MS.gene73956:CDS |
TGATTCCTTGAAGATTGGTT+GGG | 0.467366 | 5.2:+51053363 | MS.gene73956:CDS |
TCACACCATTTCCTAGCTGT+TGG | 0.474083 | 5.2:-51053313 | None:intergenic |
ATGATTCCTTGAAGATTGGT+TGG | 0.475399 | 5.2:+51053362 | MS.gene73956:CDS |
TACCGGAGTGAGGAGCAGTT+TGG | 0.479172 | 5.2:-51052810 | None:intergenic |
ATTATCCAACAGCTAGGAAA+TGG | 0.485842 | 5.2:+51053308 | MS.gene73956:CDS |
TTTCACCTGTTTCAGGTGCA+GGG | 0.499054 | 5.2:-51053207 | None:intergenic |
GACAAGGGTGATGGTTTCAT+CGG | 0.500866 | 5.2:+51054413 | MS.gene73956:CDS |
CCGACCTTAAAAGCCAAGAA+TGG | 0.501034 | 5.2:+51053038 | MS.gene73956:CDS |
GATCTTTCCAAAGCTTGACT+TGG | 0.502331 | 5.2:+51052991 | MS.gene73956:CDS |
AGTCAAACTTACGTTGAAGA+AGG | 0.505352 | 5.2:+51053399 | MS.gene73956:CDS |
TATAGATAAATGGTCGTGCC+TGG | 0.505583 | 5.2:-51054366 | None:intergenic |
AGATTCCCAACCAATCTTCA+AGG | 0.507716 | 5.2:-51053368 | None:intergenic |
AGTGAGAGCATCAACAAATC+CGG | 0.509407 | 5.2:-51052774 | None:intergenic |
GAGTTACCTAATTCAACAAT+GGG | 0.511187 | 5.2:+51054287 | MS.gene73956:CDS |
ATCCTTGAACCAAACATGGT+TGG | 0.512134 | 5.2:+51054310 | MS.gene73956:CDS |
ACTTGTTGCTTGGTTCATTG+AGG | 0.515871 | 5.2:-51054518 | None:intergenic |
TTTGAATGTAGTGGAATTGG+CGG | 0.519833 | 5.2:+51053258 | MS.gene73956:CDS |
CTGAAACAGGTGAAAGAGGC+AGG | 0.524658 | 5.2:+51053215 | MS.gene73956:CDS |
AAAGGCATATTATCAGCCTA+AGG | 0.530867 | 5.2:+51053438 | MS.gene73956:CDS |
ACAAGGGTGATGGTTTCATC+GGG | 0.532238 | 5.2:+51054414 | MS.gene73956:CDS |
CCAGGAATAACAGGAGGAGG+AGG | 0.533404 | 5.2:-51052869 | None:intergenic |
CCCTAATTGGCACATTCTTG+AGG | 0.538147 | 5.2:+51053498 | MS.gene73956:CDS |
CGCCAAACTGCTCCTCACTC+CGG | 0.538251 | 5.2:+51052808 | MS.gene73956:CDS |
GCACCTGAAACAGGTGAAAG+AGG | 0.547550 | 5.2:+51053211 | MS.gene73956:CDS |
AAGGCATATTATCAGCCTAA+GGG | 0.550266 | 5.2:+51053439 | MS.gene73956:CDS |
GGATGAGTCTTCAAATTCAA+AGG | 0.551941 | 5.2:+51053420 | MS.gene73956:CDS |
ACAGTAGAGATTGTCCCCTT+AGG | 0.555913 | 5.2:-51053454 | None:intergenic |
GGAGTTACCTAATTCAACAA+TGG | 0.567859 | 5.2:+51054286 | MS.gene73956:intron |
AATGTGCCAATTAGGGACAT+TGG | 0.568650 | 5.2:-51053491 | None:intergenic |
TGTTGATGCTCTCACTGATG+AGG | 0.570829 | 5.2:+51052781 | MS.gene73956:CDS |
TGGCCAGGAATAACAGGAGG+AGG | 0.572795 | 5.2:-51052872 | None:intergenic |
GGAATTGGCGGACAAGAACA+TGG | 0.582831 | 5.2:+51053270 | MS.gene73956:CDS |
TTGTGTATTATCCAACAGCT+AGG | 0.584708 | 5.2:+51053302 | MS.gene73956:CDS |
TCAGTAGACTACGTACTGGC+TGG | 0.603214 | 5.2:+51053080 | MS.gene73956:CDS |
CAGGAATTTAACTGAGAGTG+CGG | 0.604399 | 5.2:+51053234 | MS.gene73956:CDS |
ATCAAGTCAGCGCATTCATG+AGG | 0.615421 | 5.2:-51052971 | None:intergenic |
AAACTCAGTAGACTACGTAC+TGG | 0.617424 | 5.2:+51053076 | MS.gene73956:CDS |
TCTGACACAGAGCTATACAT+TGG | 0.617625 | 5.2:+51054470 | MS.gene73956:CDS |
TGGGATCCTTGAACCAAACA+TGG | 0.620645 | 5.2:+51054306 | MS.gene73956:CDS |
TCGGGAACAGTACAATGGCA+GGG | 0.632286 | 5.2:+51054432 | MS.gene73956:CDS |
ACCTTAAAAGCCAAGAATGG+GGG | 0.634733 | 5.2:+51053041 | MS.gene73956:CDS |
GACCTTAAAAGCCAAGAATG+GGG | 0.635286 | 5.2:+51053040 | MS.gene73956:CDS |
CTTGGGCAGTTACCGGAGTG+AGG | 0.639258 | 5.2:-51052820 | None:intergenic |
AGGCATATTATCAGCCTAAG+GGG | 0.646519 | 5.2:+51053440 | MS.gene73956:CDS |
TTTCATCGGGAACAGTACAA+TGG | 0.687293 | 5.2:+51054427 | MS.gene73956:CDS |
CCTGGCCAAGAAGACGACGA+TGG | 0.694726 | 5.2:+51052887 | MS.gene73956:CDS |
TCTTGGCCAGGAATAACAGG+AGG | 0.699852 | 5.2:-51052875 | None:intergenic |
TAGTCTACTGAGTTTCACGT+AGG | 0.730433 | 5.2:-51053068 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTAACATTATTTTTGTTT+AGG | - | chr5.2:51052045-51052064 | None:intergenic | 10.0% |
!! | TAAAATCGAATCAAAATTAA+TGG | + | chr5.2:51052013-51052032 | MS.gene73956:intron | 15.0% |
!! | AAGAATCTGATATAGATAAA+TGG | - | chr5.2:51054379-51054398 | None:intergenic | 20.0% |
!! | AATTAACCTATGATAAAGAA+GGG | - | chr5.2:51054051-51054070 | None:intergenic | 20.0% |
!! | ATGAAAAGTTTCTTATCAAT+TGG | - | chr5.2:51053930-51053949 | None:intergenic | 20.0% |
!! | ATTATGAAATTCATGCATAA+TGG | - | chr5.2:51052476-51052495 | None:intergenic | 20.0% |
!! | ATTGATACGTATAAAAAGAA+TGG | + | chr5.2:51052419-51052438 | MS.gene73956:intron | 20.0% |
!! | TCAAACAAATCATGAAATTA+TGG | - | chr5.2:51053588-51053607 | None:intergenic | 20.0% |
!! | TGTGAAAGAATAAAAAAACT+TGG | + | chr5.2:51052333-51052352 | MS.gene73956:intron | 20.0% |
!! | TTCTTTATCATAGGTTAATT+GGG | + | chr5.2:51054051-51054070 | MS.gene73956:intron | 20.0% |
!!! | AATTCCAACTAATTTTTTTC+TGG | - | chr5.2:51053170-51053189 | None:intergenic | 20.0% |
!!! | CAATGTTTTAGAATTACATT+TGG | - | chr5.2:51053748-51053767 | None:intergenic | 20.0% |
!!! | TTTGTATTTTGCAAGATTTT+AGG | - | chr5.2:51054082-51054101 | None:intergenic | 20.0% |
! | ACCTAGACAAAATACTTAAA+AGG | + | chr5.2:51052183-51052202 | MS.gene73956:intron | 25.0% |
! | AGAAGAATATGGAATTTGTA+GGG | - | chr5.2:51054205-51054224 | None:intergenic | 25.0% |
! | CAATTAACCTATGATAAAGA+AGG | - | chr5.2:51054052-51054071 | None:intergenic | 25.0% |
! | CTGTTATGTATTTATAGAAC+CGG | + | chr5.2:51052357-51052376 | MS.gene73956:intron | 25.0% |
! | CTTCTTTATCATAGGTTAAT+TGG | + | chr5.2:51054050-51054069 | MS.gene73956:intron | 25.0% |
! | TACAATGAGAAATGCTTAAA+AGG | - | chr5.2:51053863-51053882 | None:intergenic | 25.0% |
! | TATGATAAAGAAGGGAAAAA+TGG | - | chr5.2:51054043-51054062 | None:intergenic | 25.0% |
! | TATGTATTGTTGTCAAAATC+CGG | - | chr5.2:51052614-51052633 | None:intergenic | 25.0% |
! | TGAATAAAGTCACAAAATCA+TGG | + | chr5.2:51052572-51052591 | MS.gene73956:intron | 25.0% |
!! | ACAAGGATTTTTCTTCTTTT+GGG | + | chr5.2:51052520-51052539 | MS.gene73956:intron | 25.0% |
!! | ATTTTTCCCTTCTTTATCAT+AGG | + | chr5.2:51054042-51054061 | MS.gene73956:intron | 25.0% |
!! | TACAAGGATTTTTCTTCTTT+TGG | + | chr5.2:51052519-51052538 | MS.gene73956:intron | 25.0% |
!! | TTTTGTACAATAGTCCATAT+AGG | + | chr5.2:51051971-51051990 | MS.gene73956:intron | 25.0% |
!!! | AACAATCGATTCTAAAATGT+TGG | - | chr5.2:51053799-51053818 | None:intergenic | 25.0% |
!!! | ACTTTTTTTTTTGAAGGGAA+TGG | - | chr5.2:51054157-51054176 | None:intergenic | 25.0% |
!!! | CTAGGACTTTTTTTTTTGAA+GGG | - | chr5.2:51054162-51054181 | None:intergenic | 25.0% |
!!! | GATTTTGATGCAATTTTACA+AGG | + | chr5.2:51052503-51052522 | MS.gene73956:intron | 25.0% |
!!! | TCAAAAGTTTTGAATGACAA+GGG | + | chr5.2:51054398-51054417 | MS.gene73956:CDS | 25.0% |
!!! | TCCTTTTAAGTATTTTGTCT+AGG | - | chr5.2:51052187-51052206 | None:intergenic | 25.0% |
!!! | TCTAGGACTTTTTTTTTTGA+AGG | - | chr5.2:51054163-51054182 | None:intergenic | 25.0% |
!!! | TTCAAAAGTTTTGAATGACA+AGG | + | chr5.2:51054397-51054416 | MS.gene73956:CDS | 25.0% |
!!! | TTCGATTTTGTTATCCTATA+TGG | - | chr5.2:51051988-51052007 | None:intergenic | 25.0% |
AAAAATTAGTTGGAATTCGC+AGG | + | chr5.2:51053173-51053192 | MS.gene73956:CDS | 30.0% | |
AAAGTATACTATATCCCACA+AGG | + | chr5.2:51052656-51052675 | MS.gene73956:intron | 30.0% | |
AAGAATATGGAATTTGTAGG+GGG | - | chr5.2:51054203-51054222 | None:intergenic | 30.0% | |
ATACAAACATAGTCAATCCT+TGG | + | chr5.2:51054095-51054114 | MS.gene73956:intron | 30.0% | |
CATGAAAACAACAGAATCTT+TGG | - | chr5.2:51053137-51053156 | None:intergenic | 30.0% | |
GAAGAATATGGAATTTGTAG+GGG | - | chr5.2:51054204-51054223 | None:intergenic | 30.0% | |
GAGAAGAATATGGAATTTGT+AGG | - | chr5.2:51054206-51054225 | None:intergenic | 30.0% | |
GAGTTACCTAATTCAACAAT+GGG | + | chr5.2:51054287-51054306 | MS.gene73956:CDS | 30.0% | |
GGAATAGACAATATCTAGTT+AGG | + | chr5.2:51052266-51052285 | MS.gene73956:intron | 30.0% | |
GTAATGATCATAAAGACACT+GGG | - | chr5.2:51052726-51052745 | None:intergenic | 30.0% | |
GTGAACTTTAAATTTGAGTG+AGG | - | chr5.2:51052091-51052110 | None:intergenic | 30.0% | |
GTGGGATATAGTATACTTTA+GGG | - | chr5.2:51052655-51052674 | None:intergenic | 30.0% | |
TACAAATCATCATCCAAAAC+TGG | - | chr5.2:51051800-51051819 | None:intergenic | 30.0% | |
TATTGAGGAACAGTAATTGA+CGG | - | chr5.2:51054228-51054247 | None:intergenic | 30.0% | |
TCTGCCAGAAAAAAATTAGT+TGG | + | chr5.2:51053163-51053182 | MS.gene73956:CDS | 30.0% | |
TGTGGGATATAGTATACTTT+AGG | - | chr5.2:51052656-51052675 | None:intergenic | 30.0% | |
TGTTTGATAAACATGGTTGT+CGG | + | chr5.2:51051868-51051887 | MS.gene73956:intron | 30.0% | |
TTATCATAGGTTAATTGGGA+TGG | + | chr5.2:51054055-51054074 | MS.gene73956:intron | 30.0% | |
! | ACATTTGGAACTTATCCTAT+AGG | - | chr5.2:51053733-51053752 | None:intergenic | 30.0% |
! | AGGTATAGTTCATTTAGAAC+TGG | + | chr5.2:51052286-51052305 | MS.gene73956:intron | 30.0% |
! | ATGGACTTAATTTCCAGTTT+TGG | + | chr5.2:51051784-51051803 | MS.gene73956:intron | 30.0% |
! | GTTTGATAATTGTGTTGAAG+TGG | + | chr5.2:51053602-51053621 | MS.gene73956:intron | 30.0% |
!! | TATACTTTAGGGTGAATCTT+TGG | - | chr5.2:51052644-51052663 | None:intergenic | 30.0% |
AAACACTCCTATTGCTAAGT+AGG | + | chr5.2:51053882-51053901 | MS.gene73956:intron | 35.0% | |
AAGGATCCCATTGTTGAATT+AGG | - | chr5.2:51054296-51054315 | None:intergenic | 35.0% | |
AAGGCATATTATCAGCCTAA+GGG | + | chr5.2:51053439-51053458 | MS.gene73956:CDS | 35.0% | |
AATCCATCATCGTATTTGTC+AGG | - | chr5.2:51052222-51052241 | None:intergenic | 35.0% | |
ACTCCTACATAGCAATGAAA+AGG | - | chr5.2:51054271-51054290 | None:intergenic | 35.0% | |
ACTTCGTAGATTCTTCTGTT+TGG | + | chr5.2:51053687-51053706 | MS.gene73956:intron | 35.0% | |
AGAATATGGAATTTGTAGGG+GGG | - | chr5.2:51054202-51054221 | None:intergenic | 35.0% | |
AGTCAAACTTACGTTGAAGA+AGG | + | chr5.2:51053399-51053418 | MS.gene73956:CDS | 35.0% | |
ATGATTCCTTGAAGATTGGT+TGG | + | chr5.2:51053362-51053381 | MS.gene73956:CDS | 35.0% | |
ATTATCCAACAGCTAGGAAA+TGG | + | chr5.2:51053308-51053327 | MS.gene73956:CDS | 35.0% | |
ATTCTTCCAATGTCCCTAAT+TGG | + | chr5.2:51053485-51053504 | MS.gene73956:CDS | 35.0% | |
CTCCTACATAGCAATGAAAA+GGG | - | chr5.2:51054270-51054289 | None:intergenic | 35.0% | |
GGAGTTACCTAATTCAACAA+TGG | + | chr5.2:51054286-51054305 | MS.gene73956:intron | 35.0% | |
GGATGAGTCTTCAAATTCAA+AGG | + | chr5.2:51053420-51053439 | MS.gene73956:CDS | 35.0% | |
GGTAATGATCATAAAGACAC+TGG | - | chr5.2:51052727-51052746 | None:intergenic | 35.0% | |
GTAATTGACGGAGAAGAATA+TGG | - | chr5.2:51054216-51054235 | None:intergenic | 35.0% | |
GTAGATGATTCCTTGAAGAT+TGG | + | chr5.2:51053358-51053377 | MS.gene73956:CDS | 35.0% | |
TAGTTGCAAATTAGCCAAAG+CGG | + | chr5.2:51051842-51051861 | MS.gene73956:intron | 35.0% | |
TATCAGAATCCAACCATGTT+TGG | - | chr5.2:51054322-51054341 | None:intergenic | 35.0% | |
TCAAGATCCTACTTAGCAAT+AGG | - | chr5.2:51053892-51053911 | None:intergenic | 35.0% | |
TGAAATTCATGCATAATGGC+AGG | - | chr5.2:51052472-51052491 | None:intergenic | 35.0% | |
TGGATTTCGAGATTTAAGTC+CGG | + | chr5.2:51052592-51052611 | MS.gene73956:intron | 35.0% | |
TTGTGTATTATCCAACAGCT+AGG | + | chr5.2:51053302-51053321 | MS.gene73956:CDS | 35.0% | |
TTTATCAAACAATCCCGCTT+TGG | - | chr5.2:51051859-51051878 | None:intergenic | 35.0% | |
TTTATTCTTTCACACCACAC+TGG | - | chr5.2:51052327-51052346 | None:intergenic | 35.0% | |
! | AAAGGCATATTATCAGCCTA+AGG | + | chr5.2:51053438-51053457 | MS.gene73956:CDS | 35.0% |
! | GAAATGGTGTGATTTTGTGA+TGG | + | chr5.2:51053324-51053343 | MS.gene73956:CDS | 35.0% |
! | GCATAATGGCAGGATTTTAA+AGG | - | chr5.2:51052462-51052481 | None:intergenic | 35.0% |
! | TGATTCCTTGAAGATTGGTT+GGG | + | chr5.2:51053363-51053382 | MS.gene73956:CDS | 35.0% |
! | TTCCCTTTTCATTGCTATGT+AGG | + | chr5.2:51054265-51054284 | MS.gene73956:intron | 35.0% |
! | TTTGAATGTAGTGGAATTGG+CGG | + | chr5.2:51053258-51053277 | MS.gene73956:CDS | 35.0% |
!! | CAAATACGATGATGGATTGA+AGG | + | chr5.2:51052224-51052243 | MS.gene73956:intron | 35.0% |
!! | CGATTCTAAAATGTTGGAGA+TGG | - | chr5.2:51053793-51053812 | None:intergenic | 35.0% |
!! | TGTTGTGAGAGTTTTGACAT+AGG | - | chr5.2:51052924-51052943 | None:intergenic | 35.0% |
!!! | CTTCTTTTGGGATTCTACTA+TGG | + | chr5.2:51052532-51052551 | MS.gene73956:intron | 35.0% |
!!! | GATTCTGATACTTTTTCAGC+TGG | + | chr5.2:51054332-51054351 | MS.gene73956:CDS | 35.0% |
!!! | GGTTTTGAATGTAGTGGAAT+TGG | + | chr5.2:51053255-51053274 | MS.gene73956:CDS | 35.0% |
!!! | TGATTTTGTGATGGATGCTA+AGG | + | chr5.2:51053333-51053352 | MS.gene73956:CDS | 35.0% |
AAACATAGTCAATCCTTGGC+AGG | + | chr5.2:51054099-51054118 | MS.gene73956:intron | 40.0% | |
AAACTCAGTAGACTACGTAC+TGG | + | chr5.2:51053076-51053095 | MS.gene73956:CDS | 40.0% | |
AATGTGCCAATTAGGGACAT+TGG | - | chr5.2:51053494-51053513 | None:intergenic | 40.0% | |
ACCTCAAGAATGTGCCAATT+AGG | - | chr5.2:51053502-51053521 | None:intergenic | 40.0% | |
ACCTTAAAAGCCAAGAATGG+GGG | + | chr5.2:51053041-51053060 | MS.gene73956:CDS | 40.0% | |
AGATTCCCAACCAATCTTCA+AGG | - | chr5.2:51053371-51053390 | None:intergenic | 40.0% | |
AGGCATATTATCAGCCTAAG+GGG | + | chr5.2:51053440-51053459 | MS.gene73956:CDS | 40.0% | |
AGTTGCAAATTAGCCAAAGC+GGG | + | chr5.2:51051843-51051862 | MS.gene73956:intron | 40.0% | |
ATAGCAATGAAAAGGGAAGC+TGG | - | chr5.2:51054263-51054282 | None:intergenic | 40.0% | |
ATCCTTGAACCAAACATGGT+TGG | + | chr5.2:51054310-51054329 | MS.gene73956:CDS | 40.0% | |
ATGCCTGACAAATACGATGA+TGG | + | chr5.2:51052216-51052235 | MS.gene73956:intron | 40.0% | |
CAGGAATTTAACTGAGAGTG+CGG | + | chr5.2:51053234-51053253 | MS.gene73956:CDS | 40.0% | |
CATGTTCCAAATGACCTTGT+GGG | - | chr5.2:51052673-51052692 | None:intergenic | 40.0% | |
CCTCAAGAATGTGCCAATTA+GGG | - | chr5.2:51053501-51053520 | None:intergenic | 40.0% | |
CGACCTTAAAAGCCAAGAAT+GGG | + | chr5.2:51053039-51053058 | MS.gene73956:CDS | 40.0% | |
CTATATCCCACAAGGTCATT+TGG | + | chr5.2:51052664-51052683 | MS.gene73956:intron | 40.0% | |
GAAATGATGCATGGAAAGGA+TGG | - | chr5.2:51052752-51052771 | None:intergenic | 40.0% | |
GACCTTAAAAGCCAAGAATG+GGG | + | chr5.2:51053040-51053059 | MS.gene73956:CDS | 40.0% | |
GATCTTTCCAAAGCTTGACT+TGG | + | chr5.2:51052991-51053010 | MS.gene73956:CDS | 40.0% | |
GCGGGATTGTTTGATAAACA+TGG | + | chr5.2:51051861-51051880 | MS.gene73956:intron | 40.0% | |
GGGAATGGTATATCTAGTGA+AGG | - | chr5.2:51054142-51054161 | None:intergenic | 40.0% | |
GGTCGAATGGAATAGTGAAA+TGG | + | chr5.2:51051902-51051921 | MS.gene73956:intron | 40.0% | |
TAGTCTACTGAGTTTCACGT+AGG | - | chr5.2:51053071-51053090 | None:intergenic | 40.0% | |
TATAGATAAATGGTCGTGCC+TGG | - | chr5.2:51054369-51054388 | None:intergenic | 40.0% | |
TCTGACACAGAGCTATACAT+TGG | + | chr5.2:51054470-51054489 | MS.gene73956:CDS | 40.0% | |
TGGATTGAAGGAAAGGATGA+TGG | + | chr5.2:51052236-51052255 | MS.gene73956:intron | 40.0% | |
TTTCATCGGGAACAGTACAA+TGG | + | chr5.2:51054427-51054446 | MS.gene73956:CDS | 40.0% | |
TTTCCATGCATCATTTCAGC+CGG | + | chr5.2:51052755-51052774 | MS.gene73956:intron | 40.0% | |
! | AAACCTGTCATTTGACGAAG+AGG | + | chr5.2:51052390-51052409 | MS.gene73956:intron | 40.0% |
! | AACCTGTCATTTGACGAAGA+GGG | + | chr5.2:51052391-51052410 | MS.gene73956:intron | 40.0% |
! | ATCCAACCATGTTTGGTTCA+AGG | - | chr5.2:51054315-51054334 | None:intergenic | 40.0% |
! | TTGAAGATTGGTTGGGAATC+TGG | + | chr5.2:51053370-51053389 | MS.gene73956:CDS | 40.0% |
!! | AAGCTAGCTTTGTGTCCTAT+AGG | + | chr5.2:51053715-51053734 | MS.gene73956:intron | 40.0% |
!! | ACGATGATGGATTGAAGGAA+AGG | + | chr5.2:51052229-51052248 | MS.gene73956:intron | 40.0% |
!! | AGTGAGAGCATCAACAAATC+CGG | - | chr5.2:51052777-51052796 | None:intergenic | 40.0% |
!! | GGAAAGGATGATGGATTGAA+AGG | + | chr5.2:51052245-51052264 | MS.gene73956:intron | 40.0% |
!! | GTTTTGAATGACAAGGGTGA+TGG | + | chr5.2:51054404-51054423 | MS.gene73956:CDS | 40.0% |
!!! | ACTTTTTCAGCTGGCATTCA+GGG | + | chr5.2:51054341-51054360 | MS.gene73956:CDS | 40.0% |
!!! | CCATTCTTGGCTTTTAAGGT+CGG | - | chr5.2:51053041-51053060 | None:intergenic | 40.0% |
!!! | TACTTTTTCAGCTGGCATTC+AGG | + | chr5.2:51054340-51054359 | MS.gene73956:CDS | 40.0% |
AATCCGGCTGAAATGATGCA+TGG | - | chr5.2:51052761-51052780 | None:intergenic | 45.0% | |
ACAGTAGAGATTGTCCCCTT+AGG | - | chr5.2:51053457-51053476 | None:intergenic | 45.0% | |
AGTACAATGGCAGGGTTTAG+TGG | + | chr5.2:51054440-51054459 | MS.gene73956:CDS | 45.0% | |
ATCAAGTCAGCGCATTCATG+AGG | - | chr5.2:51052974-51052993 | None:intergenic | 45.0% | |
CCCTAATTGGCACATTCTTG+AGG | + | chr5.2:51053498-51053517 | MS.gene73956:CDS | 45.0% | |
CCGACCTTAAAAGCCAAGAA+TGG | + | chr5.2:51053038-51053057 | MS.gene73956:CDS | 45.0% | |
GAAGAACACTGAGCATGTCT+AGG | - | chr5.2:51054180-51054199 | None:intergenic | 45.0% | |
GACTTCACCAAGTCAAGCTT+TGG | - | chr5.2:51053001-51053020 | None:intergenic | 45.0% | |
GCATGTTCCAAATGACCTTG+TGG | - | chr5.2:51052674-51052693 | None:intergenic | 45.0% | |
GGCTGAAATGATGCATGGAA+AGG | - | chr5.2:51052756-51052775 | None:intergenic | 45.0% | |
GTTGGAGATGGAGACTCTAA+TGG | - | chr5.2:51053781-51053800 | None:intergenic | 45.0% | |
TACCCTCTTCGTCAAATGAC+AGG | - | chr5.2:51052396-51052415 | None:intergenic | 45.0% | |
TCACACCATTTCCTAGCTGT+TGG | - | chr5.2:51053316-51053335 | None:intergenic | 45.0% | |
TCTTCTTGGCCAGGAATAAC+AGG | - | chr5.2:51052881-51052900 | None:intergenic | 45.0% | |
TGATGCATGGAAAGGATGGA+CGG | - | chr5.2:51052748-51052767 | None:intergenic | 45.0% | |
TGGGATCCTTGAACCAAACA+TGG | + | chr5.2:51054306-51054325 | MS.gene73956:CDS | 45.0% | |
TGTTGATGCTCTCACTGATG+AGG | + | chr5.2:51052781-51052800 | MS.gene73956:CDS | 45.0% | |
TGTTTCCATCGTCGTCTTCT+TGG | - | chr5.2:51052895-51052914 | None:intergenic | 45.0% | |
! | ACAAGGGTGATGGTTTCATC+GGG | + | chr5.2:51054414-51054433 | MS.gene73956:CDS | 45.0% |
! | GACAAGGGTGATGGTTTCAT+CGG | + | chr5.2:51054413-51054432 | MS.gene73956:CDS | 45.0% |
! | GGATTTTGCTTCAGGTCGAA+TGG | + | chr5.2:51051889-51051908 | MS.gene73956:intron | 45.0% |
! | GGCAAGAAGTCAGCTGATTT+AGG | - | chr5.2:51054500-51054519 | None:intergenic | 45.0% |
! | TGGTTGTCGGATTTTGCTTC+AGG | + | chr5.2:51051881-51051900 | MS.gene73956:intron | 45.0% |
! | TTTCACCTGTTTCAGGTGCA+GGG | - | chr5.2:51053210-51053229 | None:intergenic | 45.0% |
!! | ACCCCCATTCTTGGCTTTTA+AGG | - | chr5.2:51053045-51053064 | None:intergenic | 45.0% |
!!! | GAGTGCGGTTTTGAATGTAG+TGG | + | chr5.2:51053249-51053268 | MS.gene73956:CDS | 45.0% |
AAAAGGGAAGCTGGTGGTAG+AGG | - | chr5.2:51054254-51054273 | None:intergenic | 50.0% | |
AACTTCCCTGCACCTGAAAC+AGG | + | chr5.2:51053202-51053221 | MS.gene73956:CDS | 50.0% | |
AGGAGAAGGAGGAGGATCTT+GGG | - | chr5.2:51052840-51052859 | None:intergenic | 50.0% | |
ATCGGGAACAGTACAATGGC+AGG | + | chr5.2:51054431-51054450 | MS.gene73956:CDS | 50.0% | |
CATGCATGTCGTTCCCCTAA+CGG | + | chr5.2:51052689-51052708 | MS.gene73956:intron | 50.0% | |
CTGAAACAGGTGAAAGAGGC+AGG | + | chr5.2:51053215-51053234 | MS.gene73956:CDS | 50.0% | |
CTGCCTCTTTCACCTGTTTC+AGG | - | chr5.2:51053217-51053236 | None:intergenic | 50.0% | |
GACAGGTTTGTACTCGTGAC+CGG | - | chr5.2:51052379-51052398 | None:intergenic | 50.0% | |
GCAATGAAAAGGGAAGCTGG+TGG | - | chr5.2:51054260-51054279 | None:intergenic | 50.0% | |
GCACCTGAAACAGGTGAAAG+AGG | + | chr5.2:51053211-51053230 | MS.gene73956:CDS | 50.0% | |
GGAGATTGTGACACCGTTAG+GGG | - | chr5.2:51052705-51052724 | None:intergenic | 50.0% | |
GGGAGATTGTGACACCGTTA+GGG | - | chr5.2:51052706-51052725 | None:intergenic | 50.0% | |
TCGGGAACAGTACAATGGCA+GGG | + | chr5.2:51054432-51054451 | MS.gene73956:CDS | 50.0% | |
TCTTGGCCAGGAATAACAGG+AGG | - | chr5.2:51052878-51052897 | None:intergenic | 50.0% | |
TGGGAGATTGTGACACCGTT+AGG | - | chr5.2:51052707-51052726 | None:intergenic | 50.0% | |
TGTACGATGAAGAGCCAGTG+TGG | + | chr5.2:51052310-51052329 | MS.gene73956:intron | 50.0% | |
TTGCAAGCTTCAACCTGCCA+AGG | - | chr5.2:51054115-51054134 | None:intergenic | 50.0% | |
! | CTTTCACCTGTTTCAGGTGC+AGG | - | chr5.2:51053211-51053230 | None:intergenic | 50.0% |
! | GGAATTGGCGGACAAGAACA+TGG | + | chr5.2:51053270-51053289 | MS.gene73956:CDS | 50.0% |
! | TCAGTAGACTACGTACTGGC+TGG | + | chr5.2:51053080-51053099 | MS.gene73956:CDS | 50.0% |
ATAACAGGAGGAGGAGGAGG+AGG | - | chr5.2:51052866-51052885 | None:intergenic | 55.0% | |
CCAGGAATAACAGGAGGAGG+AGG | - | chr5.2:51052872-51052891 | None:intergenic | 55.0% | |
CCTCCTCCTCCTGTTATTCC+TGG | + | chr5.2:51052869-51052888 | MS.gene73956:CDS | 55.0% | |
GAGGAGAAGGAGGAGGATCT+TGG | - | chr5.2:51052841-51052860 | None:intergenic | 55.0% | |
GGAATAACAGGAGGAGGAGG+AGG | - | chr5.2:51052869-51052888 | None:intergenic | 55.0% | |
GGAGGATCTTGGGCAGTTAC+CGG | - | chr5.2:51052830-51052849 | None:intergenic | 55.0% | |
TACCGGAGTGAGGAGCAGTT+TGG | - | chr5.2:51052813-51052832 | None:intergenic | 55.0% | |
TGGCCAGGAATAACAGGAGG+AGG | - | chr5.2:51052875-51052894 | None:intergenic | 55.0% | |
TGGTGGTAGAGGCGGTATTG+AGG | - | chr5.2:51054243-51054262 | None:intergenic | 55.0% | |
AGGGAAGCTGGTGGTAGAGG+CGG | - | chr5.2:51054251-51054270 | None:intergenic | 60.0% | |
CCATCGTCGTCTTCTTGGCC+AGG | - | chr5.2:51052890-51052909 | None:intergenic | 60.0% | |
CCTGGCCAAGAAGACGACGA+TGG | + | chr5.2:51052887-51052906 | MS.gene73956:CDS | 60.0% | |
CGCCAAACTGCTCCTCACTC+CGG | + | chr5.2:51052808-51052827 | MS.gene73956:CDS | 60.0% | |
CGTAGGTGCACCCCCATTCT+TGG | - | chr5.2:51053054-51053073 | None:intergenic | 60.0% | |
CTTGGGCAGTTACCGGAGTG+AGG | - | chr5.2:51052823-51052842 | None:intergenic | 60.0% | |
ACAGGAGGAGGAGGAGGAGG+AGG | - | chr5.2:51052863-51052882 | None:intergenic | 65.0% | |
CAGCTGGCATTCAGGGAGCC+AGG | + | chr5.2:51054348-51054367 | MS.gene73956:CDS | 65.0% | |
GGAGGAGGAGGAGAAGGAGG+AGG | - | chr5.2:51052848-51052867 | None:intergenic | 65.0% | |
GGAGGAGGAGGAGGAGAAGG+AGG | - | chr5.2:51052851-51052870 | None:intergenic | 65.0% | |
GGAGGAGGAGGAGGAGGAGA+AGG | - | chr5.2:51052854-51052873 | None:intergenic | 65.0% | |
GGAGGAGGAGGAGGAGGAGG+AGG | - | chr5.2:51052857-51052876 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 51051784 | 51054526 | 51051784 | ID=MS.gene73956 |
chr5.2 | mRNA | 51051784 | 51054526 | 51051784 | ID=MS.gene73956.t1;Parent=MS.gene73956 |
chr5.2 | exon | 51051784 | 51051799 | 51051784 | ID=MS.gene73956.t1.exon1;Parent=MS.gene73956.t1 |
chr5.2 | CDS | 51051784 | 51051799 | 51051784 | ID=cds.MS.gene73956.t1;Parent=MS.gene73956.t1 |
chr5.2 | exon | 51052774 | 51053519 | 51052774 | ID=MS.gene73956.t1.exon2;Parent=MS.gene73956.t1 |
chr5.2 | CDS | 51052774 | 51053519 | 51052774 | ID=cds.MS.gene73956.t1;Parent=MS.gene73956.t1 |
chr5.2 | exon | 51054287 | 51054526 | 51054287 | ID=MS.gene73956.t1.exon3;Parent=MS.gene73956.t1 |
chr5.2 | CDS | 51054287 | 51054526 | 51054287 | ID=cds.MS.gene73956.t1;Parent=MS.gene73956.t1 |
Gene Sequence |
Protein sequence |