AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73965

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73965.t1 MTR_5g060950 97.207 358 10 0 16 373 1 358 0.0 728
MS.gene73965.t1 MTR_3g073560 65.805 348 113 3 16 361 1 344 5.17e-157 454
MS.gene73965.t1 MTR_3g087940 49.587 363 172 3 4 361 2 358 8.53e-118 346
MS.gene73965.t1 MTR_8g091650 46.839 348 178 4 14 361 13 353 1.80e-99 299
MS.gene73965.t1 MTR_8g091650 43.045 381 180 4 14 361 13 389 1.63e-94 288
MS.gene73965.t1 MTR_8g091650 52.347 277 131 1 85 361 5 280 3.11e-93 281
MS.gene73965.t1 MTR_8g040120 52.962 287 124 3 82 361 181 463 1.96e-91 282
MS.gene73965.t1 MTR_7g089800 52.265 287 126 4 82 361 138 420 4.11e-91 280
MS.gene73965.t1 MTR_7g089800 52.265 287 126 4 82 361 167 449 8.86e-91 280
MS.gene73965.t1 MTR_7g092750 47.000 300 152 2 69 361 60 359 2.21e-90 276
MS.gene73965.t1 MTR_2g086420 51.786 280 128 2 82 361 194 466 1.21e-89 278
MS.gene73965.t1 MTR_2g086420 51.786 280 128 2 82 361 193 465 1.30e-89 278
MS.gene73965.t1 MTR_7g092750 47.351 302 148 3 69 361 161 460 6.16e-89 276
MS.gene73965.t1 MTR_4g053250 46.302 311 154 5 52 361 160 458 1.85e-84 265
MS.gene73965.t1 MTR_5g054900 44.966 298 153 2 71 361 57 350 6.47e-81 251
MS.gene73965.t1 MTR_5g054900 44.966 298 153 2 71 361 138 431 7.17e-80 251
MS.gene73965.t1 MTR_5g054900 44.295 298 151 3 71 361 57 346 5.59e-77 241
MS.gene73965.t1 MTR_7g092750 43.000 300 138 3 69 361 161 434 4.29e-76 242
MS.gene73965.t1 MTR_5g054900 44.295 298 151 3 71 361 168 457 8.03e-76 242
MS.gene73965.t1 MTR_1g111310 46.713 289 148 3 77 360 416 703 4.03e-75 246
MS.gene73965.t1 MTR_1g111310 45.263 285 146 2 77 358 49 326 1.27e-67 226
MS.gene73965.t1 MTR_0126s0080 39.823 339 178 6 4 317 122 459 3.26e-66 217
MS.gene73965.t1 MTR_3g044820 43.275 171 90 3 77 240 40 210 1.41e-42 148
MS.gene73965.t1 MTR_1g090370 31.000 200 115 5 163 357 47 228 2.04e-15 75.1
MS.gene73965.t1 MTR_1g111320 64.000 50 18 0 82 131 146 195 1.32e-12 67.0
MS.gene73965.t1 MTR_7g068860 25.698 179 117 3 188 354 45 219 2.24e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73965.t1 AT1G77920 52.785 377 148 6 1 361 1 363 1.41e-123 361
MS.gene73965.t1 AT1G22070 50.806 372 158 4 14 365 17 383 6.18e-119 350
MS.gene73965.t1 AT5G10030 50.416 361 173 3 4 361 2 359 5.10e-117 344
MS.gene73965.t1 AT5G10030 50.416 361 173 3 4 361 2 359 5.10e-117 344
MS.gene73965.t1 AT5G10030 50.416 361 173 3 4 361 2 359 5.10e-117 344
MS.gene73965.t1 AT5G10030 50.416 361 173 3 4 361 2 359 5.10e-117 344
MS.gene73965.t1 AT5G10030 50.416 361 173 3 4 361 2 359 5.10e-117 344
MS.gene73965.t1 AT5G65210 48.919 370 182 4 4 369 2 368 1.17e-116 343
MS.gene73965.t1 AT5G65210 48.919 370 182 4 4 369 2 368 1.17e-116 343
MS.gene73965.t1 AT5G65210 48.919 370 182 4 4 369 2 368 1.17e-116 343
MS.gene73965.t1 AT5G65210 48.919 370 182 4 4 369 2 368 1.17e-116 343
MS.gene73965.t1 AT5G65210 48.919 370 182 4 4 369 2 368 1.17e-116 343
MS.gene73965.t1 AT5G65210 48.919 370 182 4 4 369 2 368 1.17e-116 343
MS.gene73965.t1 AT5G65210 53.512 299 135 2 72 369 3 298 4.66e-106 314
MS.gene73965.t1 AT1G08320 47.401 327 153 6 46 361 8 326 3.24e-92 281
MS.gene73965.t1 AT1G08320 47.401 327 153 6 46 361 8 326 3.24e-92 281
MS.gene73965.t1 AT1G08320 47.401 327 153 6 46 361 132 450 1.05e-90 281
MS.gene73965.t1 AT1G08320 47.401 327 153 6 46 361 132 450 1.05e-90 281
MS.gene73965.t1 AT1G08320 47.401 327 153 6 46 361 132 450 1.05e-90 281
MS.gene73965.t1 AT5G06839 45.614 342 165 5 37 361 75 412 3.00e-87 270
MS.gene73965.t1 AT5G06839 47.541 305 145 2 72 361 151 455 5.09e-87 271
MS.gene73965.t1 AT5G06950 49.301 286 135 2 82 361 46 327 7.09e-87 266
MS.gene73965.t1 AT5G06950 49.301 286 135 2 82 361 46 327 7.09e-87 266
MS.gene73965.t1 AT5G06950 49.301 286 135 2 82 361 46 327 7.09e-87 266
MS.gene73965.t1 AT5G06950 49.301 286 135 2 82 361 46 327 7.09e-87 266
MS.gene73965.t1 AT5G06950 49.301 286 135 2 82 361 46 327 7.09e-87 266
MS.gene73965.t1 AT5G06839 44.898 343 167 5 37 361 75 413 3.94e-86 267
MS.gene73965.t1 AT3G12250 49.301 286 135 2 82 361 46 327 9.33e-86 263
MS.gene73965.t1 AT3G12250 49.301 286 135 2 82 361 46 327 9.33e-86 263
MS.gene73965.t1 AT3G12250 49.301 286 135 2 82 361 46 327 9.33e-86 263
MS.gene73965.t1 AT3G12250 49.301 286 135 2 82 361 46 327 9.33e-86 263
MS.gene73965.t1 AT3G12250 49.301 286 135 2 82 361 19 300 1.06e-85 262
MS.gene73965.t1 AT3G12250 49.301 286 135 2 82 361 40 321 1.12e-85 263
MS.gene73965.t1 AT3G12250 49.301 286 135 2 82 361 71 352 7.47e-85 261
MS.gene73965.t1 AT5G06960 48.951 286 136 2 82 361 46 327 1.20e-84 260
MS.gene73965.t1 AT5G06960 48.951 286 136 2 82 361 46 327 1.20e-84 260
MS.gene73965.t1 AT5G06960 48.951 286 136 2 82 361 26 307 1.41e-84 259
MS.gene73965.t1 AT1G68640 44.631 298 153 3 72 361 156 449 5.48e-73 234
MS.gene73965.t1 AT1G58330 29.381 194 114 6 178 354 36 223 9.63e-13 67.4

Find 69 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTCAAATTCTCAAGTT+TGG 0.192704 5.2:+51182287 None:intergenic
TTTATTGGATGTCGGTTATA+TGG 0.195844 5.2:-51182989 MS.gene73965:CDS
TTTATACAGAAGCAGTTTAT+TGG 0.255260 5.2:-51183004 MS.gene73965:CDS
TCTTTGTTTGAAATTGAATA+TGG 0.266205 5.2:-51182859 MS.gene73965:CDS
CAAGCCGATCCCTTGGATTT+CGG 0.282684 5.2:-51182159 MS.gene73965:CDS
TTGCAGCTTCTGCTTTCATT+TGG 0.310238 5.2:+51182713 None:intergenic
TGCGCAAGGCTTGTTGGCTA+TGG 0.324120 5.2:-51181828 MS.gene73965:CDS
ATCCTCCGATCCAAAGAAAA+AGG 0.331172 5.2:+51182638 None:intergenic
CCCTATTGACAGTGCATCTT+CGG 0.341917 5.2:+51182218 None:intergenic
TCATTCAAATTCTCAAGTTT+GGG 0.351091 5.2:+51182288 None:intergenic
TGATAAACGCAGGTTGTTAA+TGG 0.356991 5.2:+51182251 None:intergenic
GAAGCTCATGCAGTTGGAAT+TGG 0.366242 5.2:-51183154 MS.gene73965:CDS
CTAACCTGAGTTTATTGTTC+CGG 0.383626 5.2:+51182960 None:intergenic
TTTGGAAAAGATTTGAGTAT+TGG 0.386257 5.2:+51182731 None:intergenic
GCGCAAGGCTTGTTGGCTAT+GGG 0.386417 5.2:-51181827 MS.gene73965:CDS
CTCAACTAATCGCGCCGAAA+AGG 0.387136 5.2:-51183992 MS.gene73965:CDS
ACAGGCTTATGTTCAACAAC+TGG 0.406023 5.2:-51183190 MS.gene73965:intron
GCCGAAGATGCACTGTCAAT+AGG 0.417286 5.2:-51182219 MS.gene73965:CDS
TTATTGGATGTCGGTTATAT+GGG 0.423086 5.2:-51182988 MS.gene73965:CDS
CTTATGTTCATCTTCAACAT+TGG 0.428546 5.2:+51183882 None:intergenic
TCAAGCTGCGCAAGGCTTGT+TGG 0.435023 5.2:-51181834 MS.gene73965:CDS
AAGGTTCTCTTGATTCTTGA+GGG 0.435161 5.2:+51183734 None:intergenic
CAAGAATCAAGAGAACCTTC+TGG 0.437311 5.2:-51183730 MS.gene73965:CDS
TATCGAGAAAACAAGAAAAC+AGG 0.442585 5.2:-51183130 MS.gene73965:intron
TACTGCTTCTCCTTTGTCCA+TGG 0.443791 5.2:+51182110 None:intergenic
TGGAGAAGCAATTGAATTCA+AGG 0.443973 5.2:+51183902 None:intergenic
CTTTCAGATGGCGGCTGCCA+TGG 0.445483 5.2:-51182127 MS.gene73965:CDS
CCCTTGGATTTCGGAAACTA+CGG 0.453837 5.2:-51182150 MS.gene73965:CDS
GACAAAGGAGAAGCAGTAGA+AGG 0.456711 5.2:-51182105 MS.gene73965:CDS
CCGAAGATGCACTGTCAATA+GGG 0.462287 5.2:-51182218 MS.gene73965:CDS
TCTTAATTTGAGTGTTGAGT+AGG 0.465347 5.2:+51181737 None:intergenic
CACATACTCACTTGAAAGAA+TGG 0.468273 5.2:+51183954 None:intergenic
CAACATTCAAGCCGATCCCT+TGG 0.469358 5.2:-51182166 MS.gene73965:CDS
GTCGGTTATATGGGAACGTC+CGG 0.469360 5.2:-51182979 MS.gene73965:CDS
GAAGGTTCTCTTGATTCTTG+AGG 0.474792 5.2:+51183733 None:intergenic
CATTCTTTCAAGTGAGTATG+TGG 0.477465 5.2:-51183953 MS.gene73965:CDS
TGTTGTTGATCATACTCTGC+TGG 0.478454 5.2:+51182184 None:intergenic
TCTATTTAATCTCTGGCGTA+TGG 0.481044 5.2:-51182678 MS.gene73965:CDS
CGCAAGGCTTGTTGGCTATG+GGG 0.490281 5.2:-51181826 MS.gene73965:CDS
CTTAATTTGAGTGTTGAGTA+GGG 0.496496 5.2:+51181738 None:intergenic
CTCTACAGGCAGATCACCTT+AGG 0.498317 5.2:-51181898 MS.gene73965:intron
CGGAAACTACGGCTTTCAGA+TGG 0.514086 5.2:-51182139 MS.gene73965:CDS
AGATGCACTGTCAATAGGGT+TGG 0.525886 5.2:-51182214 MS.gene73965:CDS
CATAAGTAGCATGGAAAACA+AGG 0.527192 5.2:-51183865 MS.gene73965:intron
ATAACAGAGTTTGTTGCCTA+AGG 0.529419 5.2:+51181882 None:intergenic
TTGAAATTGAATATGGACGT+TGG 0.536052 5.2:-51182852 MS.gene73965:CDS
AGAAGCAGTTTATTGGATGT+CGG 0.539030 5.2:-51182997 MS.gene73965:CDS
TTCGCACTCTTAGTTCATTG+TGG 0.540430 5.2:-51181787 MS.gene73965:CDS
TATTCAAGAACCTGTTCCTA+AGG 0.542554 5.2:-51183692 MS.gene73965:intron
TAGATTGAAGCTCATGCAGT+TGG 0.543282 5.2:-51183160 MS.gene73965:CDS
TGTACATTTAAAATTTGTGA+TGG 0.548292 5.2:+51182610 None:intergenic
AATGAAAGCAGAAGCTGCAA+AGG 0.554661 5.2:-51182710 MS.gene73965:CDS
TCGATTGGTCAAGCTGCGCA+AGG 0.570513 5.2:-51181842 MS.gene73965:CDS
GAAGATGAACATAAGTAGCA+TGG 0.576318 5.2:-51183874 MS.gene73965:CDS
ATGTCACGCATCTTATCGAT+TGG 0.579770 5.2:-51181857 MS.gene73965:CDS
GCAAGGCTTGTTGGCTATGG+GGG 0.585303 5.2:-51181825 MS.gene73965:CDS
GCCGTAGTTTCCGAAATCCA+AGG 0.586415 5.2:+51182149 None:intergenic
GTTTCCGAAATCCAAGGGAT+CGG 0.587541 5.2:+51182155 None:intergenic
ATGGCGGCTGCCATGGACAA+AGG 0.590676 5.2:-51182120 MS.gene73965:CDS
GCGCGGCTGCTCGAAAATGT+CGG 0.599361 5.2:-51183294 MS.gene73965:CDS
GTCTCTTGATCATCTCCAGA+AGG 0.603267 5.2:+51183715 None:intergenic
CTCTGGCGTATGGAAATCAC+CGG 0.616184 5.2:-51182668 MS.gene73965:CDS
CTTTCAAGTGAGTATGTGGG+AGG 0.622614 5.2:-51183949 MS.gene73965:CDS
CCGTAGTTTCCGAAATCCAA+GGG 0.636532 5.2:+51182150 None:intergenic
ATTCTTTCAAGTGAGTATGT+GGG 0.652269 5.2:-51183952 MS.gene73965:CDS
ACGTCCGGAACAATAAACTC+AGG 0.666698 5.2:-51182964 MS.gene73965:intron
CTTGCTGAGATGATAAACGC+AGG 0.683767 5.2:+51182241 None:intergenic
ACGACAAGCACAAAATCGCG+CGG 0.686197 5.2:-51183311 MS.gene73965:CDS
AAACTACGGCTTTCAGATGG+CGG 0.696618 5.2:-51182136 MS.gene73965:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTATATCAAATTAG+AGG + chr5.2:51182684-51182703 None:intergenic 10.0%
!! ATCAATATAACATCATAATT+TGG - chr5.2:51183687-51183706 MS.gene73965:intron 15.0%
!! TAGAAATTGAATTTATATGA+AGG - chr5.2:51182498-51182517 MS.gene73965:intron 15.0%
!! TTCAACAAATTAAGATTATA+CGG - chr5.2:51183261-51183280 MS.gene73965:intron 15.0%
!!! AATTAATTTTTTTTGACAGA+AGG + chr5.2:51182340-51182359 None:intergenic 15.0%
!! AATCAGATAATAGTAATTAG+TGG + chr5.2:51183170-51183189 None:intergenic 20.0%
!! AGTAGAAAAAGTTGAAATAA+CGG - chr5.2:51182102-51182121 MS.gene73965:CDS 20.0%
!! ATAGTTGTAACATATTATCA+TGG - chr5.2:51182300-51182319 MS.gene73965:CDS 20.0%
!! TATCAAAATTTATTCTTGCA+GGG - chr5.2:51182726-51182745 MS.gene73965:CDS 20.0%
!! TTATCAAAATTTATTCTTGC+AGG - chr5.2:51182725-51182744 MS.gene73965:CDS 20.0%
!! TTGTTAATTGTGCAAAATAT+AGG - chr5.2:51183205-51183224 MS.gene73965:intron 20.0%
!!! GAATTTCTATTTTGTTTCTA+TGG - chr5.2:51181926-51181945 MS.gene73965:intron 20.0%
!!! GCTATTTCAACTTTTTTAAA+TGG - chr5.2:51182223-51182242 MS.gene73965:CDS 20.0%
!!! TCTTTGTTTGAAATTGAATA+TGG - chr5.2:51182894-51182913 MS.gene73965:intron 20.0%
!!! TGTACATTTAAAATTTGTGA+TGG + chr5.2:51183146-51183165 None:intergenic 20.0%
! ATCATTCAAATTCTCAAGTT+TGG + chr5.2:51183469-51183488 None:intergenic 25.0%
! ATCTGTAAGAAAAAGTCAAA+TGG + chr5.2:51183438-51183457 None:intergenic 25.0%
! GAAAAAATTAAAATCGATGC+AGG + chr5.2:51183799-51183818 None:intergenic 25.0%
! GTTTCTCAATATCTATGTAT+AGG - chr5.2:51182412-51182431 MS.gene73965:intron 25.0%
! TCATTCAAATTCTCAAGTTT+GGG + chr5.2:51183468-51183487 None:intergenic 25.0%
! TTAAAGACAATTGTTTAGCT+TGG - chr5.2:51182358-51182377 MS.gene73965:intron 25.0%
! TTATATCAAATTAGAGGAAG+AGG + chr5.2:51182678-51182697 None:intergenic 25.0%
! TTTATACAGAAGCAGTTTAT+TGG - chr5.2:51182749-51182768 MS.gene73965:CDS 25.0%
! TTTGGAAAAGATTTGAGTAT+TGG + chr5.2:51183025-51183044 None:intergenic 25.0%
!! GATGTTTTCTATTTAATCTC+TGG - chr5.2:51183068-51183087 MS.gene73965:intron 25.0%
!!! AAGCATGATGATTTTTTGTA+TGG + chr5.2:51182654-51182673 None:intergenic 25.0%
!!! TTTGTATTTTTGTGATTGAC+AGG - chr5.2:51182545-51182564 MS.gene73965:intron 25.0%
AAAGACAAAATGCATCTCTA+AGG + chr5.2:51182182-51182201 None:intergenic 30.0%
AAAGACGAGAAAAATAACAC+TGG - chr5.2:51182133-51182152 MS.gene73965:CDS 30.0%
AAGACAAAATGCATCTCTAA+GGG + chr5.2:51182181-51182200 None:intergenic 30.0%
AGCGATAGAAATTTAGAGAA+GGG + chr5.2:51182206-51182225 None:intergenic 30.0%
CTTATGTTCATCTTCAACAT+TGG + chr5.2:51181874-51181893 None:intergenic 30.0%
GTGTATTAGAATTCTAACGT+GGG - chr5.2:51183765-51183784 MS.gene73965:intron 30.0%
TAGCGATAGAAATTTAGAGA+AGG + chr5.2:51182207-51182226 None:intergenic 30.0%
TATCGAGAAAACAAGAAAAC+AGG - chr5.2:51182623-51182642 MS.gene73965:CDS 30.0%
TGTGTATTAGAATTCTAACG+TGG - chr5.2:51183764-51183783 MS.gene73965:intron 30.0%
TTGAAATTGAATATGGACGT+TGG - chr5.2:51182901-51182920 MS.gene73965:intron 30.0%
! ATTCTTTCAAGTGAGTATGT+GGG - chr5.2:51181801-51181820 MS.gene73965:CDS 30.0%
! TCATACATGTTCATCCTTTT+CGG + chr5.2:51181778-51181797 None:intergenic 30.0%
! TTATTGGATGTCGGTTATAT+GGG - chr5.2:51182765-51182784 MS.gene73965:CDS 30.0%
! TTTATTGGATGTCGGTTATA+TGG - chr5.2:51182764-51182783 MS.gene73965:CDS 30.0%
!! AGTAGAAGGTTTTGTAATTC+AGG - chr5.2:51183662-51183681 MS.gene73965:intron 30.0%
!!! AATTTTTTCACCTTAGGAAC+AGG + chr5.2:51182074-51182093 None:intergenic 30.0%
!!! CGATGTAATTTTTTCACCTT+AGG + chr5.2:51182080-51182099 None:intergenic 30.0%
!!! TGCATTTTTTTCTTCTCTAC+AGG - chr5.2:51183841-51183860 MS.gene73965:intron 30.0%
AAGGTTCTCTTGATTCTTGA+GGG + chr5.2:51182022-51182041 None:intergenic 35.0%
AGAAGCAGTTTATTGGATGT+CGG - chr5.2:51182756-51182775 MS.gene73965:CDS 35.0%
CACATACTCACTTGAAAGAA+TGG + chr5.2:51181802-51181821 None:intergenic 35.0%
CATAAGTAGCATGGAAAACA+AGG - chr5.2:51181888-51181907 MS.gene73965:CDS 35.0%
CTAACCTGAGTTTATTGTTC+CGG + chr5.2:51182796-51182815 None:intergenic 35.0%
GAAGATGAACATAAGTAGCA+TGG - chr5.2:51181879-51181898 MS.gene73965:CDS 35.0%
GCTTGGAAGAGTTCATAATA+TGG - chr5.2:51182375-51182394 MS.gene73965:intron 35.0%
TATTAGAATTCTAACGTGGG+TGG - chr5.2:51183768-51183787 MS.gene73965:intron 35.0%
TATTCAAGAACCTGTTCCTA+AGG - chr5.2:51182061-51182080 MS.gene73965:intron 35.0%
TCTATTTAATCTCTGGCGTA+TGG - chr5.2:51183075-51183094 MS.gene73965:intron 35.0%
TGATAAACGCAGGTTGTTAA+TGG + chr5.2:51183505-51183524 None:intergenic 35.0%
TGGAGAAGCAATTGAATTCA+AGG + chr5.2:51181854-51181873 None:intergenic 35.0%
! CATTCTTTCAAGTGAGTATG+TGG - chr5.2:51181800-51181819 MS.gene73965:CDS 35.0%
!! ATAACAGAGTTTGTTGCCTA+AGG + chr5.2:51183874-51183893 None:intergenic 35.0%
!! TGACTTTTTCTTACAGATCG+TGG - chr5.2:51183440-51183459 MS.gene73965:intron 35.0%
AATGAAAGCAGAAGCTGCAA+AGG - chr5.2:51183043-51183062 MS.gene73965:intron 40.0%
ACAGGCTTATGTTCAACAAC+TGG - chr5.2:51182563-51182582 MS.gene73965:intron 40.0%
ATCACACATAACATGTGTCG+TGG - chr5.2:51183732-51183751 MS.gene73965:CDS 40.0%
ATCCTCCGATCCAAAGAAAA+AGG + chr5.2:51183118-51183137 None:intergenic 40.0%
ATGTCACGCATCTTATCGAT+TGG - chr5.2:51183896-51183915 MS.gene73965:CDS 40.0%
CAAGAATCAAGAGAACCTTC+TGG - chr5.2:51182023-51182042 MS.gene73965:intron 40.0%
GAAGGTTCTCTTGATTCTTG+AGG + chr5.2:51182023-51182042 None:intergenic 40.0%
TAGATTGAAGCTCATGCAGT+TGG - chr5.2:51182593-51182612 MS.gene73965:intron 40.0%
TGTTGTTGATCATACTCTGC+TGG + chr5.2:51183572-51183591 None:intergenic 40.0%
TTCGCACTCTTAGTTCATTG+TGG - chr5.2:51183966-51183985 MS.gene73965:CDS 40.0%
TTGCAGCTTCTGCTTTCATT+TGG + chr5.2:51183043-51183062 None:intergenic 40.0%
! AAAATGTCGGCTGCGAAAAA+AGG - chr5.2:51182472-51182491 MS.gene73965:intron 40.0%
! GAACGCCTTTTTCTTTGGAT+CGG - chr5.2:51183110-51183129 MS.gene73965:intron 40.0%
AAACTACGGCTTTCAGATGG+CGG - chr5.2:51183617-51183636 MS.gene73965:intron 45.0%
ACGTCCGGAACAATAAACTC+AGG - chr5.2:51182789-51182808 MS.gene73965:CDS 45.0%
AGATGCACTGTCAATAGGGT+TGG - chr5.2:51183539-51183558 MS.gene73965:intron 45.0%
CCCTATTGACAGTGCATCTT+CGG + chr5.2:51183538-51183557 None:intergenic 45.0%
CCCTTGGATTTCGGAAACTA+CGG - chr5.2:51183603-51183622 MS.gene73965:intron 45.0%
CCGAAGATGCACTGTCAATA+GGG - chr5.2:51183535-51183554 MS.gene73965:intron 45.0%
CCGTAGTTTCCGAAATCCAA+GGG + chr5.2:51183606-51183625 None:intergenic 45.0%
CTTGCTGAGATGATAAACGC+AGG + chr5.2:51183515-51183534 None:intergenic 45.0%
GAAGCTCATGCAGTTGGAAT+TGG - chr5.2:51182599-51182618 MS.gene73965:intron 45.0%
GACAAAGGAGAAGCAGTAGA+AGG - chr5.2:51183648-51183667 MS.gene73965:intron 45.0%
GTCTCTTGATCATCTCCAGA+AGG + chr5.2:51182041-51182060 None:intergenic 45.0%
GTTTCCGAAATCCAAGGGAT+CGG + chr5.2:51183601-51183620 None:intergenic 45.0%
TACTGCTTCTCCTTTGTCCA+TGG + chr5.2:51183646-51183665 None:intergenic 45.0%
TCCTGTCATGTTTCGAAGCA+GGG - chr5.2:51182868-51182887 MS.gene73965:intron 45.0%
! CTTTCAAGTGAGTATGTGGG+AGG - chr5.2:51181804-51181823 MS.gene73965:CDS 45.0%
!! AAGTGCGTGTTGACTATACG+AGG - chr5.2:51183306-51183325 MS.gene73965:CDS 45.0%
!! CAAAGAAAAAGGCGTTCGAC+CGG + chr5.2:51183107-51183126 None:intergenic 45.0%
!!! TTTTAAAAAATATAATTTTG+AGG + chr5.2:51182845-51182864 None:intergenic 5.0%
ACGACAAGCACAAAATCGCG+CGG - chr5.2:51182442-51182461 MS.gene73965:intron 50.0%
CAACATTCAAGCCGATCCCT+TGG - chr5.2:51183587-51183606 MS.gene73965:intron 50.0%
CAAGCCGATCCCTTGGATTT+CGG - chr5.2:51183594-51183613 MS.gene73965:intron 50.0%
CGGAAACTACGGCTTTCAGA+TGG - chr5.2:51183614-51183633 MS.gene73965:intron 50.0%
CTCAACTAATCGCGCCGAAA+AGG - chr5.2:51181761-51181780 MS.gene73965:CDS 50.0%
CTCTACAGGCAGATCACCTT+AGG - chr5.2:51183855-51183874 MS.gene73965:intron 50.0%
CTCTGGCGTATGGAAATCAC+CGG - chr5.2:51183085-51183104 MS.gene73965:intron 50.0%
GCCGAAGATGCACTGTCAAT+AGG - chr5.2:51183534-51183553 MS.gene73965:intron 50.0%
GCCGTAGTTTCCGAAATCCA+AGG + chr5.2:51183607-51183626 None:intergenic 50.0%
GTCCTGTCATGTTTCGAAGC+AGG - chr5.2:51182867-51182886 MS.gene73965:CDS 50.0%
GTCGGTTATATGGGAACGTC+CGG - chr5.2:51182774-51182793 MS.gene73965:CDS 50.0%
TCCCTGCTTCGAAACATGAC+AGG + chr5.2:51182872-51182891 None:intergenic 50.0%
! CGCCTTTTTCTTTGGATCGG+AGG - chr5.2:51183113-51183132 MS.gene73965:intron 50.0%
! CGGTCGAACGCCTTTTTCTT+TGG - chr5.2:51183105-51183124 MS.gene73965:intron 50.0%
TCAAGCTGCGCAAGGCTTGT+TGG - chr5.2:51183919-51183938 MS.gene73965:CDS 55.0%
! TCGATTGGTCAAGCTGCGCA+AGG - chr5.2:51183911-51183930 MS.gene73965:CDS 55.0%
!! CGCAAGGCTTGTTGGCTATG+GGG - chr5.2:51183927-51183946 MS.gene73965:CDS 55.0%
!! GCAAGGCTTGTTGGCTATGG+GGG - chr5.2:51183928-51183947 MS.gene73965:CDS 55.0%
!! GCGCAAGGCTTGTTGGCTAT+GGG - chr5.2:51183926-51183945 MS.gene73965:CDS 55.0%
!! TGCGCAAGGCTTGTTGGCTA+TGG - chr5.2:51183925-51183944 MS.gene73965:CDS 55.0%
ATGGCGGCTGCCATGGACAA+AGG - chr5.2:51183633-51183652 MS.gene73965:intron 60.0%
GCGCGGCTGCTCGAAAATGT+CGG - chr5.2:51182459-51182478 MS.gene73965:intron 60.0%
! CTTTCAGATGGCGGCTGCCA+TGG - chr5.2:51183626-51183645 MS.gene73965:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 51181739 51184036 51181739 ID=MS.gene73965
chr5.2 mRNA 51181739 51184036 51181739 ID=MS.gene73965.t1;Parent=MS.gene73965
chr5.2 exon 51183866 51184036 51183866 ID=MS.gene73965.t1.exon1;Parent=MS.gene73965.t1
chr5.2 CDS 51183866 51184036 51183866 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
chr5.2 exon 51183693 51183767 51183693 ID=MS.gene73965.t1.exon2;Parent=MS.gene73965.t1
chr5.2 CDS 51183693 51183767 51183693 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
chr5.2 exon 51183282 51183341 51183282 ID=MS.gene73965.t1.exon3;Parent=MS.gene73965.t1
chr5.2 CDS 51183282 51183341 51183282 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
chr5.2 exon 51183131 51183208 51183131 ID=MS.gene73965.t1.exon4;Parent=MS.gene73965.t1
chr5.2 CDS 51183131 51183208 51183131 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
chr5.2 exon 51182965 51183028 51182965 ID=MS.gene73965.t1.exon5;Parent=MS.gene73965.t1
chr5.2 CDS 51182965 51183028 51182965 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
chr5.2 exon 51182615 51182886 51182615 ID=MS.gene73965.t1.exon6;Parent=MS.gene73965.t1
chr5.2 CDS 51182615 51182886 51182615 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
chr5.2 exon 51182092 51182319 51182092 ID=MS.gene73965.t1.exon7;Parent=MS.gene73965.t1
chr5.2 CDS 51182092 51182319 51182092 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
chr5.2 exon 51181739 51181912 51181739 ID=MS.gene73965.t1.exon8;Parent=MS.gene73965.t1
chr5.2 CDS 51181739 51181912 51181739 ID=cds.MS.gene73965.t1;Parent=MS.gene73965.t1
Gene Sequence

>MS.gene73965

ATGAACTCTTCATCATCATCAACTCAACTAATCGCGCCGAAAAGGATGAACATGTATGAGCCATTCTTTCAAGTGAGTATGTGGGAGGATAGCTTTAAAGTTGATCATAGTACCTTGAATTCAATTGCTTCTCCAATGTTGAAGATGAACATAAGTAGCATGGAAAACAAGGTGAAATTGAACTCATGAATTTCTATTTTGTTTCTATGGTTATCTATGTTTTATGAGAAAACTAGTTGACAATAGTCTTTTGAATTTTATTTGTATAGTCTGAATGTATCCCTCAAGAATCAAGAGAACCTTCTGGAGATGATCAAGAGACTATTCAAGAACCTGTTCCTAAGGTGAAAAAATTACATCGACAGTAGAAAAAGTTGAAATAACGGCAGAAATTAAAGACGAGAAAAATAACACTGGTCACTAAATTTAGCGTTTCTAACCCTTAGAGATGCATTTTGTCTTTTCCCTTCTCTAAATTTCTATCGCTATTTCAACTTTTTTAAATGGTGTTTTATATTTCTTTTATATATTTAGTTATCATAATTTTAATGTTTCATTTTAATAGTTGTAACATATTATCATGGAGTTTGAGAAGTGACCTTCTGTCAAAAAAAATTAATTAAAGACAATTGTTTAGCTTGGAAGAGTTCATAATATGGCTTTTGACATTATAGTTTCTCAATATCTATGTATAGGTACTGCGACGACAAGCACAAAATCGCGCGGCTGCTCGAAAATGTCGGCTGCGAAAAAAGGTTGTAGAAATTGAATTTATATGAAGGAAGCTACTAGTGCTTATGATCTTATTTGTATTTTTGTGATTGACAGGCTTATGTTCAACAACTGGAAACAAGTAGATTGAAGCTCATGCAGTTGGAATTGGATATCGAGAAAACAAGAAAACAGGTGATACCATACAAAAAATCATCATGCTTACCTCTTCCTCTAATTTGATATAAATTATTTTATCTATCATTCATAATGATTTATCAAAATTTATTCTTGCAGGGTTTATACAGAAGCAGTTTATTGGATGTCGGTTATATGGGAACGTCCGGAACAATAAACTCAGGTTAGTGATTGATAATTGTAGTTTTAAGTTTCCTCAAAATTATATTTTTTAAAATAGTCCTGTCATGTTTCGAAGCAGGGATGTCTTTGTTTGAAATTGAATATGGACGTTGGATTGAAGAACAAGATCGACAAAACGAAGAACTAAGAAATGCATTGCAAACTAATGCATCTGATATACAACTTCATCTACTTGTTGAGAGTAGCTTGAACCAATACTCAAATCTTTTCCAAATGAAAGCAGAAGCTGCAAAGGCTGATGTTTTCTATTTAATCTCTGGCGTATGGAAATCACCGGTCGAACGCCTTTTTCTTTGGATCGGAGGATCTCGTCCATCACAAATTTTAAATGTACATCCACTAATTACTATTATCTGATTTTTTATATTTTCTTTTTGTTAATTGTGCAAAATATAGGAGCTTTATATGATCAAGAATACATTAACAAAATTTCAACAAATTAAGATTATACGGTCATACTGAGCTGATAAATCATAAGTGCGTGTTGACTATACGAGGAGTACTAATTGCAAATTGTTGTTCTATGTTATGTAAATTGTTAAACATCATGTTTCTATAGCGTCGATTGATACATGTAGCTAATCTATCAATGATTTTGTACAAACCATTTGACTTTTTCTTACAGATCGTGGTACCCAAACTTGAGAATTTGAATGATCAACAAATTGCTACCATTAACAACCTGCGTTTATCATCTCAGCAAGCCGAAGATGCACTGTCAATAGGGTTGGAGAAACTCCAGCAGAGTATGATCAACAACATTCAAGCCGATCCCTTGGATTTCGGAAACTACGGCTTTCAGATGGCGGCTGCCATGGACAAAGGAGAAGCAGTAGAAGGTTTTGTAATTCAGGTAATCAATATAACATCATAATTTGGTCTTGTTTGTTGTTTGTTATCAATCACACATAACATGTGTCGTGGAAACGTTAATGTGTATTAGAATTCTAACGTGGGTGGTTAGTCCTGCATCGATTTTAATTTTTTCGCACTTTCTATAACTAAATTAATGCATTTTTTTCTTCTCTACAGGCAGATCACCTTAGGCAACAAACTCTGTTATACATGTCACGCATCTTATCGATTGGTCAAGCTGCGCAAGGCTTGTTGGCTATGGGGGAATACTTTCATCGTCTTCGCACTCTTAGTTCATTGTGGACTGCTCGTTCATGTCATCATTTCTACCCTACTCAACACTCAAATTAA
Protein sequence

>MS.gene73965.t1

MNSSSSSTQLIAPKRMNMYEPFFQVSMWEDSFKVDHSTLNSIASPMLKMNISSMENKSECIPQESREPSGDDQETIQEPVPKVLRRQAQNRAAARKCRLRKKAYVQQLETSRLKLMQLELDIEKTRKQGLYRSSLLDVGYMGTSGTINSGMSLFEIEYGRWIEEQDRQNEELRNALQTNASDIQLHLLVESSLNQYSNLFQMKAEAAKADVFYLISGVWKSPVERLFLWIGGSRPSQILNIVVPKLENLNDQQIATINNLRLSSQQAEDALSIGLEKLQQSMINNIQADPLDFGNYGFQMAAAMDKGEAVEGFVIQADHLRQQTLLYMSRILSIGQAAQGLLAMGEYFHRLRTLSSLWTARSCHHFYPTQHSN