Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73966.t1 | AES97857.1 | 76.7 | 249 | 13 | 1 | 1 | 204 | 49 | 297 | 5.30E-95 | 357.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73966.t1 | Q9C5Q2 | 34.2 | 222 | 112 | 5 | 33 | 250 | 69 | 260 | 1.2e-15 | 85.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73966.t1 | G7K935 | 76.7 | 249 | 13 | 1 | 1 | 204 | 49 | 297 | 3.8e-95 | 357.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene73966.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73966.t1 | MTR_5g060990 | 76.707 | 249 | 13 | 1 | 1 | 204 | 49 | 297 | 1.69e-126 | 361 |
| MS.gene73966.t1 | MTR_8g043960 | 34.034 | 238 | 122 | 8 | 33 | 252 | 93 | 313 | 1.14e-25 | 102 |
| MS.gene73966.t1 | MTR_7g088090 | 33.333 | 252 | 131 | 9 | 27 | 252 | 80 | 320 | 1.93e-25 | 102 |
| MS.gene73966.t1 | MTR_3g010660 | 33.061 | 245 | 130 | 9 | 32 | 252 | 88 | 322 | 6.75e-25 | 100 |
| MS.gene73966.t1 | MTR_2g086390 | 32.683 | 205 | 107 | 8 | 28 | 225 | 72 | 252 | 5.91e-16 | 75.9 |
| MS.gene73966.t1 | MTR_2g086390 | 32.683 | 205 | 107 | 8 | 28 | 225 | 72 | 252 | 8.54e-16 | 75.5 |
| MS.gene73966.t1 | MTR_6g026800 | 29.719 | 249 | 148 | 5 | 22 | 252 | 82 | 321 | 2.91e-14 | 71.6 |
| MS.gene73966.t1 | MTR_5g088230 | 31.390 | 223 | 108 | 7 | 33 | 252 | 84 | 264 | 5.78e-14 | 70.1 |
| MS.gene73966.t1 | MTR_5g088230 | 31.390 | 223 | 108 | 7 | 33 | 252 | 89 | 269 | 7.15e-14 | 69.7 |
| MS.gene73966.t1 | MTR_3g101780 | 37.984 | 129 | 63 | 6 | 118 | 232 | 274 | 399 | 4.85e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73966.t1 | AT2G41070 | 34.821 | 224 | 112 | 7 | 33 | 252 | 78 | 271 | 1.62e-24 | 99.0 |
| MS.gene73966.t1 | AT3G56850 | 34.711 | 242 | 108 | 8 | 33 | 252 | 84 | 297 | 1.65e-24 | 99.4 |
| MS.gene73966.t1 | AT2G41070 | 34.821 | 224 | 112 | 7 | 33 | 252 | 69 | 262 | 1.74e-24 | 98.6 |
| MS.gene73966.t1 | AT2G41070 | 34.821 | 224 | 112 | 7 | 33 | 252 | 69 | 262 | 1.74e-24 | 98.6 |
| MS.gene73966.t1 | AT2G41070 | 34.821 | 224 | 112 | 7 | 33 | 252 | 69 | 262 | 1.74e-24 | 98.6 |
| MS.gene73966.t1 | AT2G41070 | 34.343 | 198 | 98 | 6 | 33 | 228 | 69 | 236 | 4.25e-20 | 86.7 |
| MS.gene73966.t1 | AT2G36270 | 28.205 | 273 | 125 | 10 | 33 | 238 | 148 | 416 | 8.83e-14 | 70.9 |
| MS.gene73966.t1 | AT2G36270 | 28.205 | 273 | 125 | 10 | 33 | 238 | 148 | 416 | 8.83e-14 | 70.9 |
| MS.gene73966.t1 | AT2G36270 | 27.059 | 255 | 120 | 8 | 33 | 225 | 148 | 398 | 1.26e-12 | 67.4 |
| MS.gene73966.t1 | AT4G34000 | 48.718 | 78 | 37 | 2 | 168 | 243 | 359 | 435 | 5.70e-11 | 62.4 |
| MS.gene73966.t1 | AT4G34000 | 48.718 | 78 | 37 | 2 | 168 | 243 | 359 | 435 | 5.70e-11 | 62.4 |
| MS.gene73966.t1 | AT4G34000 | 48.718 | 78 | 37 | 2 | 168 | 243 | 359 | 435 | 5.70e-11 | 62.4 |
| MS.gene73966.t1 | AT4G34000 | 55.172 | 58 | 25 | 1 | 168 | 225 | 359 | 415 | 6.16e-11 | 62.4 |
| MS.gene73966.t1 | AT1G45249 | 43.529 | 85 | 38 | 2 | 178 | 252 | 332 | 416 | 7.90e-11 | 62.0 |
| MS.gene73966.t1 | AT1G45249 | 43.529 | 85 | 38 | 2 | 178 | 252 | 347 | 431 | 9.92e-11 | 61.6 |
| MS.gene73966.t1 | AT1G45249 | 43.529 | 85 | 38 | 2 | 178 | 252 | 347 | 431 | 9.92e-11 | 61.6 |
Find 51 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGCAACAATCAATTT+TGG | 0.121196 | 5.2:+51222587 | MS.gene73966:CDS |
| GAAACTCAAGTTCCATTTAT+TGG | 0.183062 | 5.2:+51222693 | MS.gene73966:CDS |
| TTTGGTTCAACTCCAATAAA+TGG | 0.213001 | 5.2:-51222705 | None:intergenic |
| GAGAACAAACTTATGGAAAT+TGG | 0.227423 | 5.2:+51222912 | MS.gene73966:CDS |
| TATTGGAGTTGAACCAAATT+TGG | 0.228912 | 5.2:+51222710 | MS.gene73966:CDS |
| TGTGAAGCCATGACCAAATT+TGG | 0.273930 | 5.2:-51222723 | None:intergenic |
| GGTTTATGAGAACAAACTTA+TGG | 0.279232 | 5.2:+51222905 | MS.gene73966:CDS |
| CATGCTAAGGCTATTAATAT+TGG | 0.286901 | 5.2:+51222639 | MS.gene73966:CDS |
| CTGAGCTAACACGCCGTAAT+TGG | 0.291240 | 5.2:-51225838 | None:intergenic |
| ATTAATTCTTCATTTCTATA+TGG | 0.293058 | 5.2:+51222450 | MS.gene73966:CDS |
| CAAGAAAATGTTCATGCTAT+TGG | 0.325704 | 5.2:+51222666 | MS.gene73966:CDS |
| CTCACTCCATACCTCATTGA+TGG | 0.344051 | 5.2:-51222523 | None:intergenic |
| AGATTTCGGTGTTGCAAATT+CGG | 0.363775 | 5.2:+51222884 | MS.gene73966:CDS |
| GAATTTGCAACACCGAAATC+TGG | 0.383257 | 5.2:-51222882 | None:intergenic |
| ATAGGGTTGTGTCCAGATTT+CGG | 0.384705 | 5.2:+51222870 | MS.gene73966:intron |
| TACCGAACTCAAATTGATAA+AGG | 0.388384 | 5.2:+51223293 | MS.gene73966:CDS |
| GGTGCTGGTGGAAGCGGCGT+TGG | 0.410177 | 5.2:+51223002 | MS.gene73966:CDS |
| TTTCTATATGGTAACAATAG+TGG | 0.415037 | 5.2:+51222462 | MS.gene73966:CDS |
| AGAAATGAAGAATTAATATC+AGG | 0.418535 | 5.2:-51222444 | None:intergenic |
| TACCTTTATCAATTTGAGTT+CGG | 0.422062 | 5.2:-51223295 | None:intergenic |
| GAGATCAAGGGCAAAGAAAC+AGG | 0.423260 | 5.2:+51223112 | MS.gene73966:CDS |
| GCGAATCTGCTGCGAGATCA+AGG | 0.428490 | 5.2:+51223099 | MS.gene73966:CDS |
| TCACTCCAACATACCAATTA+CGG | 0.443876 | 5.2:+51225825 | MS.gene73966:CDS |
| AAGGGAGGTGCTGGTGGAAG+CGG | 0.452209 | 5.2:+51222996 | MS.gene73966:CDS |
| TGCGTCGTCGTTGCCCCGAT+TGG | 0.462993 | 5.2:-51222948 | None:intergenic |
| AAGAATTAATATCAGGTGTA+GGG | 0.473272 | 5.2:-51222437 | None:intergenic |
| TTGATCTCGCAGCAGATTCG+CGG | 0.487789 | 5.2:-51223097 | None:intergenic |
| GAAGAATTAATATCAGGTGT+AGG | 0.490677 | 5.2:-51222438 | None:intergenic |
| GATGGACAAATTTCAGTTGG+AGG | 0.497725 | 5.2:+51223263 | MS.gene73966:CDS |
| ATCTACATGTTCAGATTCAA+AGG | 0.498171 | 5.2:+51222977 | MS.gene73966:CDS |
| TCAGATTCAAAGGGAGGTGC+TGG | 0.512549 | 5.2:+51222987 | MS.gene73966:CDS |
| CAAGTATTCAGATGAGATGA+TGG | 0.513206 | 5.2:+51223034 | MS.gene73966:CDS |
| CTGGTGGAAGCGGCGTTGGA+AGG | 0.516752 | 5.2:+51223006 | MS.gene73966:CDS |
| TATGGTAACAATAGTGGTAG+TGG | 0.518320 | 5.2:+51222468 | MS.gene73966:CDS |
| ACAGATGGACAAATTTCAGT+TGG | 0.521534 | 5.2:+51223260 | MS.gene73966:CDS |
| ACAAAACCATCAATGAGGTA+TGG | 0.522632 | 5.2:+51222517 | MS.gene73966:CDS |
| GTTACTCAGAAATACCAATC+GGG | 0.531399 | 5.2:+51222934 | MS.gene73966:CDS |
| GGTTACTCAGAAATACCAAT+CGG | 0.533750 | 5.2:+51222933 | MS.gene73966:CDS |
| AGTTGAACCAAATTTGGTCA+TGG | 0.554386 | 5.2:+51222716 | MS.gene73966:CDS |
| ACACGCCGTAATTGGTATGT+TGG | 0.562876 | 5.2:-51225830 | None:intergenic |
| GATTCAAAGGGAGGTGCTGG+TGG | 0.564466 | 5.2:+51222990 | MS.gene73966:CDS |
| TGATGGAAAAGACTGTTGAG+AGG | 0.568296 | 5.2:+51223051 | MS.gene73966:CDS |
| ACACATAAATAAGTTACAGA+TGG | 0.576179 | 5.2:+51223245 | MS.gene73966:CDS |
| CGAATCTGCTGCGAGATCAA+GGG | 0.577446 | 5.2:+51223100 | MS.gene73966:CDS |
| TCTACATGTTCAGATTCAAA+GGG | 0.597077 | 5.2:+51222978 | MS.gene73966:CDS |
| GTCATGGCTTCACAGCCAGA+AGG | 0.598955 | 5.2:+51222732 | MS.gene73966:CDS |
| TGAGAGGAGGCAGAAGCGAA+TGG | 0.599629 | 5.2:+51223067 | MS.gene73966:CDS |
| TGGAAAAGACTGTTGAGAGG+AGG | 0.661516 | 5.2:+51223054 | MS.gene73966:CDS |
| ACATGTTCAGATTCAAAGGG+AGG | 0.661738 | 5.2:+51222981 | MS.gene73966:CDS |
| GTGTAACAAAACCATCAATG+AGG | 0.668143 | 5.2:+51222512 | MS.gene73966:CDS |
| TTACTCAGAAATACCAATCG+GGG | 0.689219 | 5.2:+51222935 | MS.gene73966:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATATTACAATTTGA+AGG | + | chr5.2:51225313-51225332 | MS.gene73966:intron | 10.0% |
| !! | GTAATATAAATATAAATTTG+TGG | - | chr5.2:51225306-51225325 | None:intergenic | 10.0% |
| !!! | TCTTTGAAAAAAATTATTTT+AGG | + | chr5.2:51225144-51225163 | MS.gene73966:intron | 10.0% |
| !!! | TTTAACAAATCAATTTTATT+AGG | + | chr5.2:51225052-51225071 | MS.gene73966:intron | 10.0% |
| !! | AAAAAATAAATTAAGTGTGT+TGG | + | chr5.2:51224708-51224727 | MS.gene73966:intron | 15.0% |
| !! | AAAAATAAATTAAGTGTGTT+GGG | + | chr5.2:51224709-51224728 | MS.gene73966:intron | 15.0% |
| !! | ATTAATTCTTCATTTCTATA+TGG | + | chr5.2:51222450-51222469 | MS.gene73966:CDS | 15.0% |
| !! | ATTTCCCTAAAAAAATTATT+GGG | + | chr5.2:51225077-51225096 | MS.gene73966:intron | 15.0% |
| !! | TATTTCCCTAAAAAAATTAT+TGG | + | chr5.2:51225076-51225095 | MS.gene73966:intron | 15.0% |
| !! | TTATTGTAAAAAAATTGTGA+TGG | + | chr5.2:51225269-51225288 | MS.gene73966:intron | 15.0% |
| !!! | ATAAACCCAATAATTTTTTT+AGG | - | chr5.2:51225085-51225104 | None:intergenic | 15.0% |
| !!! | TAAACCCAATAATTTTTTTA+GGG | - | chr5.2:51225084-51225103 | None:intergenic | 15.0% |
| !! | AACAAATAAAACAGAATGTA+TGG | - | chr5.2:51223328-51223347 | None:intergenic | 20.0% |
| !! | AACCAACAAAAAAATGTAAT+TGG | + | chr5.2:51222549-51222568 | MS.gene73966:CDS | 20.0% |
| !! | AAGTATCAAATAAAGAAGAA+TGG | - | chr5.2:51223219-51223238 | None:intergenic | 20.0% |
| !! | AATGATAACTAAGTTATATG+AGG | - | chr5.2:51224302-51224321 | None:intergenic | 20.0% |
| !! | ACCAACAAAAAAATGTAATT+GGG | + | chr5.2:51222550-51222569 | MS.gene73966:CDS | 20.0% |
| !! | AGAAATGAAGAATTAATATC+AGG | - | chr5.2:51222447-51222466 | None:intergenic | 20.0% |
| !! | AGCAAATAAAGGTTATAAAA+TGG | - | chr5.2:51224962-51224981 | None:intergenic | 20.0% |
| !! | ATTTGAATTTGGATACATTT+AGG | + | chr5.2:51223543-51223562 | MS.gene73966:intron | 20.0% |
| !! | CATATTTACAGATAATAGAA+AGG | - | chr5.2:51225117-51225136 | None:intergenic | 20.0% |
| !! | CTCAAGGAATTATATATATA+GGG | + | chr5.2:51223682-51223701 | MS.gene73966:intron | 20.0% |
| !! | GCAAATAAAGGTTATAAAAT+GGG | - | chr5.2:51224961-51224980 | None:intergenic | 20.0% |
| !! | TATTCTCTTATAACAAACAT+AGG | - | chr5.2:51224814-51224833 | None:intergenic | 20.0% |
| !! | TCATTATTATTGATCAAGTT+TGG | + | chr5.2:51224092-51224111 | MS.gene73966:intron | 20.0% |
| !! | TGAAAATATATCTTCTAATG+TGG | + | chr5.2:51225756-51225775 | MS.gene73966:intron | 20.0% |
| !! | TTTATTAATATTGCAGAAAG+TGG | + | chr5.2:51225781-51225800 | MS.gene73966:intron | 20.0% |
| !!! | AATTTGCAACAATCAATTTT+GGG | + | chr5.2:51222588-51222607 | MS.gene73966:CDS | 20.0% |
| !!! | ATGAAACTGTTATTTGAATT+TGG | + | chr5.2:51223532-51223551 | MS.gene73966:intron | 20.0% |
| !!! | CTTCTTTATTTGATACTTTA+AGG | + | chr5.2:51223221-51223240 | MS.gene73966:intron | 20.0% |
| !!! | TATATCTAATGTTTTCTCAT+AGG | + | chr5.2:51223719-51223738 | MS.gene73966:intron | 20.0% |
| !!! | TTGGTATTTGAATTTTCAAT+GGG | + | chr5.2:51224507-51224526 | MS.gene73966:intron | 20.0% |
| !!! | TTTGGTATTTGAATTTTCAA+TGG | + | chr5.2:51224506-51224525 | MS.gene73966:intron | 20.0% |
| ! | AAAAAATGTAATTGGGTCAA+TGG | + | chr5.2:51222557-51222576 | MS.gene73966:CDS | 25.0% |
| ! | AAGAATTAATATCAGGTGTA+GGG | - | chr5.2:51222440-51222459 | None:intergenic | 25.0% |
| ! | AATTAGAACACATTTACTTG+TGG | + | chr5.2:51223858-51223877 | MS.gene73966:intron | 25.0% |
| ! | ACAAATTGAGATATTGCATT+AGG | - | chr5.2:51223398-51223417 | None:intergenic | 25.0% |
| ! | ACACATAAATAAGTTACAGA+TGG | + | chr5.2:51223245-51223264 | MS.gene73966:CDS | 25.0% |
| ! | AGAAAAGATAGAAAATGATG+AGG | - | chr5.2:51224997-51225016 | None:intergenic | 25.0% |
| ! | ATAAGTAAGTGATGAATTGT+TGG | + | chr5.2:51225663-51225682 | MS.gene73966:intron | 25.0% |
| ! | ATATATAATTCCTTGAGGTT+TGG | - | chr5.2:51223679-51223698 | None:intergenic | 25.0% |
| ! | ATCAAAATCAACCGATAATA+GGG | + | chr5.2:51222853-51222872 | MS.gene73966:intron | 25.0% |
| ! | CATATGATTTATCTTACAGT+TGG | - | chr5.2:51223837-51223856 | None:intergenic | 25.0% |
| ! | CCTATATATATAATTCCTTG+AGG | - | chr5.2:51223684-51223703 | None:intergenic | 25.0% |
| ! | CCTCAAGGAATTATATATAT+AGG | + | chr5.2:51223681-51223700 | MS.gene73966:intron | 25.0% |
| ! | GTAATTAAGATTTGTCATTG+TGG | + | chr5.2:51223134-51223153 | MS.gene73966:intron | 25.0% |
| ! | GTTGTACACAAACAAATATT+AGG | + | chr5.2:51224058-51224077 | MS.gene73966:intron | 25.0% |
| ! | GTTGTACACAAAGAAATATT+AGG | + | chr5.2:51224740-51224759 | MS.gene73966:intron | 25.0% |
| ! | TATATAATTCCTTGAGGTTT+GGG | - | chr5.2:51223678-51223697 | None:intergenic | 25.0% |
| ! | TGCATTCACAAAAAATTATG+TGG | - | chr5.2:51223499-51223518 | None:intergenic | 25.0% |
| ! | TTTCTATATGGTAACAATAG+TGG | + | chr5.2:51222462-51222481 | MS.gene73966:CDS | 25.0% |
| !! | CAATTTGCAACAATCAATTT+TGG | + | chr5.2:51222587-51222606 | MS.gene73966:CDS | 25.0% |
| !! | CATAGGTAGAATCAATTTTT+GGG | - | chr5.2:51224847-51224866 | None:intergenic | 25.0% |
| !! | CTGGTATTTGAATTTTCAAT+GGG | + | chr5.2:51224210-51224229 | MS.gene73966:intron | 25.0% |
| !! | TACCTTTATCAATTTGAGTT+CGG | - | chr5.2:51223298-51223317 | None:intergenic | 25.0% |
| !! | TCATAGGTAGAATCAATTTT+TGG | - | chr5.2:51224848-51224867 | None:intergenic | 25.0% |
| !! | TCTGGTATTTGAATTTTCAA+TGG | + | chr5.2:51223954-51223973 | MS.gene73966:intron | 25.0% |
| !! | TGGTATTTGAATTTTCAATG+GGG | + | chr5.2:51224211-51224230 | MS.gene73966:intron | 25.0% |
| !! | TTAAACCTTTATGTGGTTTT+AGG | + | chr5.2:51225411-51225430 | MS.gene73966:intron | 25.0% |
| !! | TTTTTGCTTAAACCTTTATG+TGG | + | chr5.2:51225404-51225423 | MS.gene73966:intron | 25.0% |
| !!! | ACCCAATTACATTTTTTTGT+TGG | - | chr5.2:51222554-51222573 | None:intergenic | 25.0% |
| AAATCTTTGTGACATGAGAT+TGG | + | chr5.2:51224162-51224181 | MS.gene73966:intron | 30.0% | |
| AACAAATAAATCCGAGTGAA+AGG | - | chr5.2:51225024-51225043 | None:intergenic | 30.0% | |
| AATCTTTGTGACATGAGATT+GGG | + | chr5.2:51224163-51224182 | MS.gene73966:intron | 30.0% | |
| AATTAGAACACACTTACTTG+TGG | + | chr5.2:51224412-51224431 | MS.gene73966:intron | 30.0% | |
| AGGAAAAATTTATTCCCAAG+AGG | + | chr5.2:51224905-51224924 | MS.gene73966:intron | 30.0% | |
| ATACGTGATAAACCAAATTG+AGG | - | chr5.2:51225552-51225571 | None:intergenic | 30.0% | |
| ATATAATTCCTTGAGGTTTG+GGG | - | chr5.2:51223677-51223696 | None:intergenic | 30.0% | |
| ATCTACATGTTCAGATTCAA+AGG | + | chr5.2:51222977-51222996 | MS.gene73966:CDS | 30.0% | |
| ATCTCATGTCACAAAGATTT+CGG | - | chr5.2:51224162-51224181 | None:intergenic | 30.0% | |
| ATTTGCATTTGCAATGGAAT+TGG | - | chr5.2:51222783-51222802 | None:intergenic | 30.0% | |
| CAAGAAAATGTTCATGCTAT+TGG | + | chr5.2:51222666-51222685 | MS.gene73966:CDS | 30.0% | |
| CATCAAAATCAACCGATAAT+AGG | + | chr5.2:51222852-51222871 | MS.gene73966:intron | 30.0% | |
| CATGCTAAGGCTATTAATAT+TGG | + | chr5.2:51222639-51222658 | MS.gene73966:CDS | 30.0% | |
| GAAAAGAAGAGAGCAAATAA+AGG | - | chr5.2:51224973-51224992 | None:intergenic | 30.0% | |
| GAAACTCAAGTTCCATTTAT+TGG | + | chr5.2:51222693-51222712 | MS.gene73966:CDS | 30.0% | |
| GAAGAATTAATATCAGGTGT+AGG | - | chr5.2:51222441-51222460 | None:intergenic | 30.0% | |
| GAGAACAAACTTATGGAAAT+TGG | + | chr5.2:51222912-51222931 | MS.gene73966:CDS | 30.0% | |
| GCTAATAGCTAACCTTTAAT+TGG | - | chr5.2:51225589-51225608 | None:intergenic | 30.0% | |
| GGTTATAAAATGGGAATTGT+AGG | - | chr5.2:51224952-51224971 | None:intergenic | 30.0% | |
| GGTTTATGAGAACAAACTTA+TGG | + | chr5.2:51222905-51222924 | MS.gene73966:CDS | 30.0% | |
| GTATGAAAGATATGTGTGTT+GGG | + | chr5.2:51223575-51223594 | MS.gene73966:intron | 30.0% | |
| TAAATATTGAGGGTTTAGGA+GGG | + | chr5.2:51224627-51224646 | MS.gene73966:intron | 30.0% | |
| TACCGAACTCAAATTGATAA+AGG | + | chr5.2:51223293-51223312 | MS.gene73966:CDS | 30.0% | |
| TACGTGATAAACCAAATTGA+GGG | - | chr5.2:51225551-51225570 | None:intergenic | 30.0% | |
| TATGAAAGATATGTGTGTTG+GGG | + | chr5.2:51223576-51223595 | MS.gene73966:intron | 30.0% | |
| TATTGGAGTTGAACCAAATT+TGG | + | chr5.2:51222710-51222729 | MS.gene73966:CDS | 30.0% | |
| TCCTAAACCCTCAATATTTA+GGG | - | chr5.2:51224627-51224646 | None:intergenic | 30.0% | |
| TCTACATGTTCAGATTCAAA+GGG | + | chr5.2:51222978-51222997 | MS.gene73966:CDS | 30.0% | |
| TCTCTTTGTCATCACTTTAA+CGG | - | chr5.2:51224553-51224572 | None:intergenic | 30.0% | |
| TGGATGATAATTAGGTTATG+AGG | - | chr5.2:51224597-51224616 | None:intergenic | 30.0% | |
| TGTATGAAAGATATGTGTGT+TGG | + | chr5.2:51223574-51223593 | MS.gene73966:intron | 30.0% | |
| TTATCACGTATGAGATTGAT+GGG | + | chr5.2:51225561-51225580 | MS.gene73966:intron | 30.0% | |
| TTTATCACGTATGAGATTGA+TGG | + | chr5.2:51225560-51225579 | MS.gene73966:intron | 30.0% | |
| TTTCTCCTAAAACCACATAA+AGG | - | chr5.2:51225419-51225438 | None:intergenic | 30.0% | |
| ! | AAGGTTAGCTATTAGCAAAT+TGG | + | chr5.2:51225593-51225612 | MS.gene73966:intron | 30.0% |
| ! | ATGAAAACTGAGCTTCATTT+TGG | - | chr5.2:51225508-51225527 | None:intergenic | 30.0% |
| ! | TAATTTTCTTGCACATGCTA+AGG | + | chr5.2:51222626-51222645 | MS.gene73966:CDS | 30.0% |
| ! | TGAAAACTGAGCTTCATTTT+GGG | - | chr5.2:51225507-51225526 | None:intergenic | 30.0% |
| ! | TTTGGTTCAACTCCAATAAA+TGG | - | chr5.2:51222708-51222727 | None:intergenic | 30.0% |
| !! | AATTTTGGGAGAAACAACTT+TGG | + | chr5.2:51222602-51222621 | MS.gene73966:CDS | 30.0% |
| !!! | GTCACATATATTTTGACCTA+AGG | + | chr5.2:51223416-51223435 | MS.gene73966:intron | 30.0% |
| !!! | TTATGTGGTTTTAGGAGAAA+AGG | + | chr5.2:51225419-51225438 | MS.gene73966:intron | 30.0% |
| AAATATTGAGGGTTTAGGAG+GGG | + | chr5.2:51224628-51224647 | MS.gene73966:intron | 35.0% | |
| AACTCCTTCTGATCTTATGT+TGG | + | chr5.2:51224881-51224900 | MS.gene73966:intron | 35.0% | |
| AATTAGAACACGCTTACTTG+TGG | + | chr5.2:51224115-51224134 | MS.gene73966:intron | 35.0% | |
| ACAAAACCATCAATGAGGTA+TGG | + | chr5.2:51222517-51222536 | MS.gene73966:CDS | 35.0% | |
| ACAGATGGACAAATTTCAGT+TGG | + | chr5.2:51223260-51223279 | MS.gene73966:CDS | 35.0% | |
| ACCCTAAATATTGAGGGTTT+AGG | + | chr5.2:51224623-51224642 | MS.gene73966:intron | 35.0% | |
| ACTCCTTCTGATCTTATGTT+GGG | + | chr5.2:51224882-51224901 | MS.gene73966:intron | 35.0% | |
| AGTTGAACCAAATTTGGTCA+TGG | + | chr5.2:51222716-51222735 | MS.gene73966:CDS | 35.0% | |
| ATCAGAAGGAGTTACAAAGT+CGG | - | chr5.2:51224874-51224893 | None:intergenic | 35.0% | |
| ATCGTGAACCCTAAATATTG+AGG | + | chr5.2:51224616-51224635 | MS.gene73966:intron | 35.0% | |
| ATCTCCTTTCAACAAACCTT+AGG | - | chr5.2:51223435-51223454 | None:intergenic | 35.0% | |
| ATGAAAGATATGTGTGTTGG+GGG | + | chr5.2:51223577-51223596 | MS.gene73966:intron | 35.0% | |
| ATTGGCATTTGCATTTGCAA+TGG | - | chr5.2:51222765-51222784 | None:intergenic | 35.0% | |
| CAAGTATTCAGATGAGATGA+TGG | + | chr5.2:51223034-51223053 | MS.gene73966:CDS | 35.0% | |
| CTAAATATTGAGGGTTTAGG+AGG | + | chr5.2:51224626-51224645 | MS.gene73966:intron | 35.0% | |
| CTCCTAAACCCTCAATATTT+AGG | - | chr5.2:51224628-51224647 | None:intergenic | 35.0% | |
| GATAAACCAAATTGAGGGAA+TGG | - | chr5.2:51225546-51225565 | None:intergenic | 35.0% | |
| GATGATCTTGATGTTGTTGA+TGG | - | chr5.2:51222821-51222840 | None:intergenic | 35.0% | |
| GGTTACTCAGAAATACCAAT+CGG | + | chr5.2:51222933-51222952 | MS.gene73966:CDS | 35.0% | |
| GTGTAACAAAACCATCAATG+AGG | + | chr5.2:51222512-51222531 | MS.gene73966:CDS | 35.0% | |
| GTTACTCAGAAATACCAATC+GGG | + | chr5.2:51222934-51222953 | MS.gene73966:CDS | 35.0% | |
| GTTCACGATGGATGATAATT+AGG | - | chr5.2:51224605-51224624 | None:intergenic | 35.0% | |
| TAAGATTTGTCATTGTGGTC+AGG | + | chr5.2:51223139-51223158 | MS.gene73966:intron | 35.0% | |
| TATGGTAACAATAGTGGTAG+TGG | + | chr5.2:51222468-51222487 | MS.gene73966:CDS | 35.0% | |
| TATGTTACGAGGTTATGCTT+AGG | - | chr5.2:51223996-51224015 | None:intergenic | 35.0% | |
| TCACTCCAACATACCAATTA+CGG | + | chr5.2:51225825-51225844 | MS.gene73966:CDS | 35.0% | |
| TCGTGAACCCTAAATATTGA+GGG | + | chr5.2:51224617-51224636 | MS.gene73966:intron | 35.0% | |
| TCTTTACCATTCCCTCAATT+TGG | + | chr5.2:51225537-51225556 | MS.gene73966:intron | 35.0% | |
| TGGATGATAACTATGTTACG+AGG | - | chr5.2:51224007-51224026 | None:intergenic | 35.0% | |
| TTACTCAGAAATACCAATCG+GGG | + | chr5.2:51222935-51222954 | MS.gene73966:CDS | 35.0% | |
| ! | CTTTTCTTTCTCCTTTCACT+CGG | + | chr5.2:51225010-51225029 | MS.gene73966:intron | 35.0% |
| ! | GGGTACAAAATATGGTGTTA+AGG | - | chr5.2:51223657-51223676 | None:intergenic | 35.0% |
| ! | TATAACGATTAGCTCCTTTG+CGG | - | chr5.2:51224241-51224260 | None:intergenic | 35.0% |
| ! | TCAATATTTAGGGTTCACGA+TGG | - | chr5.2:51224617-51224636 | None:intergenic | 35.0% |
| ! | TGTTGATGGATACTGATAGA+AGG | - | chr5.2:51222807-51222826 | None:intergenic | 35.0% |
| !! | AGATTTCGGTGTTGCAAATT+CGG | + | chr5.2:51222884-51222903 | MS.gene73966:CDS | 35.0% |
| !! | GTGTAGGGTTTTGTATAAGT+TGG | - | chr5.2:51222425-51222444 | None:intergenic | 35.0% |
| !! | TTGACCTAAGGTTTGTTGAA+AGG | + | chr5.2:51223428-51223447 | MS.gene73966:intron | 35.0% |
| !! | TTTAACGGTTAGCTTGTTTG+CGG | - | chr5.2:51224538-51224557 | None:intergenic | 35.0% |
| ACATGTTCAGATTCAAAGGG+AGG | + | chr5.2:51222981-51223000 | MS.gene73966:CDS | 40.0% | |
| ATAGGGTTGTGTCCAGATTT+CGG | + | chr5.2:51222870-51222889 | MS.gene73966:intron | 40.0% | |
| ATGGGAATTGTAGGTAGTAG+TGG | - | chr5.2:51224943-51224962 | None:intergenic | 40.0% | |
| CACTACCTACATCAGATTCT+CGG | - | chr5.2:51223466-51223485 | None:intergenic | 40.0% | |
| CTCACATCATCATGGTGATT+CGG | - | chr5.2:51223905-51223924 | None:intergenic | 40.0% | |
| CTTTGCATGCTCACATACTT+TGG | + | chr5.2:51224488-51224507 | MS.gene73966:intron | 40.0% | |
| CTTTGCATTCTCACATACTC+TGG | + | chr5.2:51223936-51223955 | MS.gene73966:intron | 40.0% | |
| GAATTTGCAACACCGAAATC+TGG | - | chr5.2:51222885-51222904 | None:intergenic | 40.0% | |
| GACTTAGTCTCACATCATCA+TGG | - | chr5.2:51223913-51223932 | None:intergenic | 40.0% | |
| GATGGACAAATTTCAGTTGG+AGG | + | chr5.2:51223263-51223282 | MS.gene73966:CDS | 40.0% | |
| GATTTCGGCAAAGGTAATCT+TGG | - | chr5.2:51224147-51224166 | None:intergenic | 40.0% | |
| GGAGAAAAGGAAAGACGAAA+AGG | + | chr5.2:51225432-51225451 | MS.gene73966:intron | 40.0% | |
| GGTCTCTTAGTGATCATGAA+TGG | - | chr5.2:51223636-51223655 | None:intergenic | 40.0% | |
| GTAACTGCAACGTTGATGTT+TGG | + | chr5.2:51225166-51225185 | MS.gene73966:intron | 40.0% | |
| GTCGTCATAATTACCGTTGT+TGG | + | chr5.2:51224437-51224456 | MS.gene73966:intron | 40.0% | |
| GTTACAAAGTCGGGTTTCAT+AGG | - | chr5.2:51224864-51224883 | None:intergenic | 40.0% | |
| TAAGACTCAGTCTCACATCA+CGG | - | chr5.2:51224468-51224487 | None:intergenic | 40.0% | |
| TCAGAAGGAGTTACAAAGTC+GGG | - | chr5.2:51224873-51224892 | None:intergenic | 40.0% | |
| TCTGGACACAACCCTATTAT+CGG | - | chr5.2:51222867-51222886 | None:intergenic | 40.0% | |
| TGATGGAAAAGACTGTTGAG+AGG | + | chr5.2:51223051-51223070 | MS.gene73966:CDS | 40.0% | |
| TGGGAATTGTAGGTAGTAGT+GGG | - | chr5.2:51224942-51224961 | None:intergenic | 40.0% | |
| TGTCACAAAGATTTCGGCAA+AGG | - | chr5.2:51224156-51224175 | None:intergenic | 40.0% | |
| TGTGAAGCCATGACCAAATT+TGG | - | chr5.2:51222726-51222745 | None:intergenic | 40.0% | |
| ! | ATTTTGTACCCCAAACCTCA+AGG | + | chr5.2:51223666-51223685 | MS.gene73966:intron | 40.0% |
| ! | GAGGTTTGGGGTACAAAATA+TGG | - | chr5.2:51223665-51223684 | None:intergenic | 40.0% |
| ! | GGTTATGCTTAGGTTGTTTG+CGG | - | chr5.2:51223986-51224005 | None:intergenic | 40.0% |
| !! | GAAGGCATTTGCATTTGCAA+TGG | - | chr5.2:51222789-51222808 | None:intergenic | 40.0% |
| !! | GATTGATGGGCTCCAATTAA+AGG | + | chr5.2:51225574-51225593 | MS.gene73966:intron | 40.0% |
| ACACGCCGTAATTGGTATGT+TGG | - | chr5.2:51225833-51225852 | None:intergenic | 45.0% | |
| ACACTATAGACCCAACCACT+AGG | - | chr5.2:51224038-51224057 | None:intergenic | 45.0% | |
| ACATCCATGATGAACGAACG+AGG | + | chr5.2:51225469-51225488 | MS.gene73966:intron | 45.0% | |
| AGTGTGTCCTAATGTGGATC+AGG | - | chr5.2:51223767-51223786 | None:intergenic | 45.0% | |
| CACTATAGACCCAACCACTA+GGG | - | chr5.2:51224037-51224056 | None:intergenic | 45.0% | |
| CATCACGGTGATTCCAACAA+CGG | - | chr5.2:51224453-51224472 | None:intergenic | 45.0% | |
| CCTCCCAACATAAGATCAGA+AGG | - | chr5.2:51224888-51224907 | None:intergenic | 45.0% | |
| CCTTCTGATCTTATGTTGGG+AGG | + | chr5.2:51224885-51224904 | MS.gene73966:intron | 45.0% | |
| CTCACTCCATACCTCATTGA+TGG | - | chr5.2:51222526-51222545 | None:intergenic | 45.0% | |
| CTTTGCATGCACACATACTC+TGG | + | chr5.2:51224191-51224210 | MS.gene73966:intron | 45.0% | |
| GAGATCAAGGGCAAAGAAAC+AGG | + | chr5.2:51223112-51223131 | MS.gene73966:CDS | 45.0% | |
| GATCCACATTAGGACACACT+AGG | + | chr5.2:51223767-51223786 | MS.gene73966:intron | 45.0% | |
| GATCCTAGTGTGTCCTAATG+TGG | - | chr5.2:51223773-51223792 | None:intergenic | 45.0% | |
| GGGAATTGTAGGTAGTAGTG+GGG | - | chr5.2:51224941-51224960 | None:intergenic | 45.0% | |
| TACATCAGATTCTCGGCAAC+AGG | - | chr5.2:51223459-51223478 | None:intergenic | 45.0% | |
| TCATTCATCGTGAACCCTAG+TGG | + | chr5.2:51224317-51224336 | MS.gene73966:intron | 45.0% | |
| TGCAATGGTAACCAACCTTC+TGG | - | chr5.2:51222750-51222769 | None:intergenic | 45.0% | |
| TGGAAAAGACTGTTGAGAGG+AGG | + | chr5.2:51223054-51223073 | MS.gene73966:CDS | 45.0% | |
| TGTTGCCGAGAATCTGATGT+AGG | + | chr5.2:51223458-51223477 | MS.gene73966:intron | 45.0% | |
| TTGACCTCGTTCGTTCATCA+TGG | - | chr5.2:51225476-51225495 | None:intergenic | 45.0% | |
| ! | TCACTAGCCTGATCCACATT+AGG | + | chr5.2:51223757-51223776 | MS.gene73966:intron | 45.0% |
| ! | TCATCATGGTGATTCGGCAA+CGG | - | chr5.2:51223899-51223918 | None:intergenic | 45.0% |
| !! | TAATATAAATATAAATTTGT+GGG | - | chr5.2:51225305-51225324 | None:intergenic | 5.0% |
| !!! | TTTAAAAAATAATGAATTTT+CGG | - | chr5.2:51224384-51224403 | None:intergenic | 5.0% |
| !!! | TTTTTTATTAAAAAAAATTG+TGG | + | chr5.2:51225236-51225255 | MS.gene73966:intron | 5.0% |
| CATCGTGAACCCTAGTGGTT+GGG | + | chr5.2:51224025-51224044 | MS.gene73966:intron | 50.0% | |
| CGAATCTGCTGCGAGATCAA+GGG | + | chr5.2:51223100-51223119 | MS.gene73966:CDS | 50.0% | |
| CTGAGCTAACACGCCGTAAT+TGG | - | chr5.2:51225841-51225860 | None:intergenic | 50.0% | |
| GCTCGACTCAGTTTGGAAGA+GGG | - | chr5.2:51223801-51223820 | None:intergenic | 50.0% | |
| GTGGATCAGGCTAGTGATGT+GGG | - | chr5.2:51223754-51223773 | None:intergenic | 50.0% | |
| TCATCCATCGTGAACCCTAG+TGG | + | chr5.2:51224020-51224039 | MS.gene73966:intron | 50.0% | |
| TCATCGTGAACCCTAGTGGT+TGG | + | chr5.2:51224321-51224340 | MS.gene73966:intron | 50.0% | |
| TGTGGATCAGGCTAGTGATG+TGG | - | chr5.2:51223755-51223774 | None:intergenic | 50.0% | |
| TGTGGTCAGGCATAAGCATC+AGG | + | chr5.2:51223152-51223171 | MS.gene73966:intron | 50.0% | |
| TTCAATGGGGCAAACCGCAA+AGG | + | chr5.2:51224224-51224243 | MS.gene73966:intron | 50.0% | |
| TTCCAAACTGAGTCGAGCGA+TGG | + | chr5.2:51223803-51223822 | MS.gene73966:intron | 50.0% | |
| TTGAGGGTTTAGGAGGGGAA+AGG | + | chr5.2:51224633-51224652 | MS.gene73966:intron | 50.0% | |
| TTGATCTCGCAGCAGATTCG+CGG | - | chr5.2:51223100-51223119 | None:intergenic | 50.0% | |
| ! | TCAGATTCAAAGGGAGGTGC+TGG | + | chr5.2:51222987-51223006 | MS.gene73966:CDS | 50.0% |
| AGCCATCGCTCGACTCAGTT+TGG | - | chr5.2:51223808-51223827 | None:intergenic | 55.0% | |
| AGGGTTTAGGAGGGGAAAGG+AGG | + | chr5.2:51224636-51224655 | MS.gene73966:intron | 55.0% | |
| ATTGACGCCCCGACACTACT+CGG | - | chr5.2:51223606-51223625 | None:intergenic | 55.0% | |
| CCAACCACTAGGGTTCACGA+TGG | - | chr5.2:51224027-51224046 | None:intergenic | 55.0% | |
| CCATCGTGAACCCTAGTGGT+TGG | + | chr5.2:51224024-51224043 | MS.gene73966:intron | 55.0% | |
| CGCTCGACTCAGTTTGGAAG+AGG | - | chr5.2:51223802-51223821 | None:intergenic | 55.0% | |
| GCGAATCTGCTGCGAGATCA+AGG | + | chr5.2:51223099-51223118 | MS.gene73966:CDS | 55.0% | |
| GGGGCAACACAGTACCTCTT+GGG | - | chr5.2:51224922-51224941 | None:intergenic | 55.0% | |
| GGGTTTAGGAGGGGAAAGGA+GGG | + | chr5.2:51224637-51224656 | MS.gene73966:intron | 55.0% | |
| GGTTTAGGAGGGGAAAGGAG+GGG | + | chr5.2:51224638-51224657 | MS.gene73966:intron | 55.0% | |
| GTCATGGCTTCACAGCCAGA+AGG | + | chr5.2:51222732-51222751 | MS.gene73966:CDS | 55.0% | |
| TGAGAGGAGGCAGAAGCGAA+TGG | + | chr5.2:51223067-51223086 | MS.gene73966:CDS | 55.0% | |
| TGGCTTCACAGCCAGAAGGT+TGG | + | chr5.2:51222736-51222755 | MS.gene73966:intron | 55.0% | |
| TGGGGCAACACAGTACCTCT+TGG | - | chr5.2:51224923-51224942 | None:intergenic | 55.0% | |
| !! | GATTCAAAGGGAGGTGCTGG+TGG | + | chr5.2:51222990-51223009 | MS.gene73966:CDS | 55.0% |
| TGGGGGAGTCCGAGTAGTGT+CGG | + | chr5.2:51223594-51223613 | MS.gene73966:intron | 60.0% | |
| !! | AAGGGAGGTGCTGGTGGAAG+CGG | + | chr5.2:51222996-51223015 | MS.gene73966:CDS | 60.0% |
| GGGGAGTCCGAGTAGTGTCG+GGG | + | chr5.2:51223596-51223615 | MS.gene73966:intron | 65.0% | |
| GGGGGAGTCCGAGTAGTGTC+GGG | + | chr5.2:51223595-51223614 | MS.gene73966:intron | 65.0% | |
| TGCGTCGTCGTTGCCCCGAT+TGG | - | chr5.2:51222951-51222970 | None:intergenic | 65.0% | |
| ! | CTGGTGGAAGCGGCGTTGGA+AGG | + | chr5.2:51223006-51223025 | MS.gene73966:CDS | 65.0% |
| !! | GGTGCTGGTGGAAGCGGCGT+TGG | + | chr5.2:51223002-51223021 | MS.gene73966:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 51222402 | 51225871 | 51222402 | ID=MS.gene73966 |
| chr5.2 | mRNA | 51222402 | 51225871 | 51222402 | ID=MS.gene73966.t1;Parent=MS.gene73966 |
| chr5.2 | exon | 51222402 | 51222753 | 51222402 | ID=MS.gene73966.t1.exon1;Parent=MS.gene73966.t1 |
| chr5.2 | CDS | 51222402 | 51222753 | 51222402 | ID=cds.MS.gene73966.t1;Parent=MS.gene73966.t1 |
| chr5.2 | exon | 51222874 | 51223133 | 51222874 | ID=MS.gene73966.t1.exon2;Parent=MS.gene73966.t1 |
| chr5.2 | CDS | 51222874 | 51223133 | 51222874 | ID=cds.MS.gene73966.t1;Parent=MS.gene73966.t1 |
| chr5.2 | exon | 51223243 | 51223314 | 51223243 | ID=MS.gene73966.t1.exon3;Parent=MS.gene73966.t1 |
| chr5.2 | CDS | 51223243 | 51223314 | 51223243 | ID=cds.MS.gene73966.t1;Parent=MS.gene73966.t1 |
| chr5.2 | exon | 51225797 | 51225871 | 51225797 | ID=MS.gene73966.t1.exon4;Parent=MS.gene73966.t1 |
| chr5.2 | CDS | 51225797 | 51225871 | 51225797 | ID=cds.MS.gene73966.t1;Parent=MS.gene73966.t1 |
| Gene Sequence |
| Protein sequence |
