Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74009.t1 | XP_003614758.2 | 98.2 | 394 | 6 | 1 | 22 | 414 | 115 | 508 | 3.20E-222 | 780.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74009.t1 | Q5NE24 | 68.8 | 401 | 100 | 8 | 22 | 408 | 114 | 503 | 2.4e-146 | 520.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74009.t1 | G7K8U7 | 98.2 | 394 | 6 | 1 | 22 | 414 | 113 | 506 | 2.3e-222 | 780.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene74009.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74009.t1 | MTR_5g058860 | 97.831 | 415 | 6 | 2 | 1 | 414 | 94 | 506 | 0.0 | 835 |
MS.gene74009.t1 | MTR_3g072710 | 68.949 | 409 | 100 | 9 | 15 | 408 | 107 | 503 | 0.0 | 538 |
MS.gene74009.t1 | MTR_7g027190 | 36.691 | 417 | 210 | 17 | 14 | 406 | 288 | 674 | 4.43e-63 | 215 |
MS.gene74009.t1 | MTR_8g093070 | 37.065 | 402 | 215 | 14 | 13 | 405 | 124 | 496 | 8.16e-63 | 210 |
MS.gene74009.t1 | MTR_3g065980 | 34.069 | 408 | 210 | 15 | 22 | 404 | 166 | 539 | 1.17e-52 | 184 |
MS.gene74009.t1 | MTR_7g074650 | 35.294 | 374 | 215 | 11 | 33 | 404 | 443 | 791 | 2.70e-52 | 187 |
MS.gene74009.t1 | MTR_1g069725 | 32.754 | 403 | 238 | 10 | 6 | 406 | 93 | 464 | 3.47e-48 | 171 |
MS.gene74009.t1 | MTR_4g076020 | 35.989 | 364 | 188 | 13 | 57 | 412 | 110 | 436 | 1.58e-47 | 168 |
MS.gene74009.t1 | MTR_5g097480 | 30.848 | 389 | 241 | 11 | 25 | 404 | 174 | 543 | 2.67e-44 | 162 |
MS.gene74009.t1 | MTR_1g096030 | 31.401 | 414 | 238 | 13 | 18 | 407 | 70 | 461 | 4.35e-43 | 157 |
MS.gene74009.t1 | MTR_3g056110 | 31.781 | 365 | 223 | 10 | 49 | 404 | 194 | 541 | 1.23e-42 | 157 |
MS.gene74009.t1 | MTR_8g442410 | 31.910 | 398 | 236 | 13 | 21 | 404 | 148 | 524 | 4.46e-42 | 155 |
MS.gene74009.t1 | MTR_1g029420 | 31.606 | 386 | 238 | 14 | 27 | 404 | 224 | 591 | 1.54e-41 | 155 |
MS.gene74009.t1 | MTR_2g082090 | 30.941 | 404 | 244 | 14 | 15 | 404 | 196 | 578 | 1.83e-41 | 154 |
MS.gene74009.t1 | MTR_4g104020 | 29.440 | 411 | 258 | 10 | 9 | 406 | 130 | 521 | 2.49e-40 | 150 |
MS.gene74009.t1 | MTR_4g077760 | 31.609 | 348 | 222 | 6 | 59 | 404 | 221 | 554 | 2.64e-40 | 151 |
MS.gene74009.t1 | MTR_3g089055 | 30.130 | 385 | 245 | 11 | 27 | 404 | 202 | 569 | 1.44e-39 | 149 |
MS.gene74009.t1 | MTR_3g089055 | 30.130 | 385 | 245 | 11 | 27 | 404 | 197 | 564 | 1.45e-39 | 149 |
MS.gene74009.t1 | MTR_4g102790 | 30.542 | 406 | 237 | 17 | 21 | 407 | 285 | 664 | 6.57e-39 | 148 |
MS.gene74009.t1 | MTR_4g133660 | 29.972 | 357 | 225 | 10 | 59 | 406 | 204 | 544 | 2.79e-38 | 145 |
MS.gene74009.t1 | MTR_2g026250 | 26.891 | 357 | 236 | 10 | 59 | 406 | 257 | 597 | 1.39e-34 | 135 |
MS.gene74009.t1 | MTR_5g094450 | 28.827 | 392 | 249 | 11 | 25 | 404 | 158 | 531 | 4.76e-34 | 133 |
MS.gene74009.t1 | MTR_2g097410 | 27.363 | 402 | 253 | 13 | 20 | 405 | 363 | 741 | 1.44e-32 | 130 |
MS.gene74009.t1 | MTR_4g064200 | 27.877 | 391 | 245 | 15 | 28 | 405 | 284 | 650 | 4.35e-30 | 122 |
MS.gene74009.t1 | MTR_0092s0100 | 29.592 | 392 | 235 | 15 | 25 | 406 | 369 | 729 | 5.24e-30 | 122 |
MS.gene74009.t1 | MTR_0092s0100 | 29.592 | 392 | 235 | 15 | 25 | 406 | 372 | 732 | 5.51e-30 | 122 |
MS.gene74009.t1 | MTR_2g097467 | 26.891 | 357 | 232 | 9 | 58 | 404 | 316 | 653 | 1.49e-29 | 121 |
MS.gene74009.t1 | MTR_4g064150 | 28.680 | 394 | 243 | 13 | 28 | 405 | 362 | 733 | 4.82e-29 | 120 |
MS.gene74009.t1 | MTR_2g034250 | 24.818 | 411 | 261 | 10 | 17 | 404 | 199 | 584 | 3.01e-28 | 117 |
MS.gene74009.t1 | MTR_3g022830 | 23.902 | 410 | 225 | 9 | 57 | 404 | 51 | 435 | 4.91e-28 | 115 |
MS.gene74009.t1 | MTR_2g097473 | 26.536 | 358 | 234 | 9 | 58 | 405 | 316 | 654 | 1.62e-27 | 115 |
MS.gene74009.t1 | MTR_8g077940 | 29.067 | 375 | 234 | 13 | 40 | 406 | 192 | 542 | 1.84e-27 | 114 |
MS.gene74009.t1 | MTR_4g064120 | 25.178 | 421 | 271 | 12 | 5 | 407 | 231 | 625 | 3.14e-27 | 114 |
MS.gene74009.t1 | MTR_2g034260 | 25.558 | 403 | 271 | 13 | 13 | 404 | 199 | 583 | 5.78e-27 | 113 |
MS.gene74009.t1 | MTR_2g097463 | 26.536 | 358 | 234 | 10 | 58 | 405 | 317 | 655 | 7.16e-27 | 113 |
MS.gene74009.t1 | MTR_7g062120 | 25.063 | 395 | 259 | 11 | 23 | 404 | 369 | 739 | 9.98e-27 | 113 |
MS.gene74009.t1 | MTR_4g097080 | 26.562 | 384 | 263 | 10 | 27 | 404 | 132 | 502 | 3.55e-26 | 110 |
MS.gene74009.t1 | MTR_2g099110 | 30.000 | 330 | 199 | 12 | 1 | 318 | 43 | 352 | 4.93e-26 | 109 |
MS.gene74009.t1 | MTR_4g064180 | 25.708 | 424 | 265 | 15 | 5 | 407 | 231 | 625 | 6.60e-26 | 110 |
MS.gene74009.t1 | MTR_4g064160 | 25.542 | 415 | 273 | 14 | 5 | 405 | 292 | 684 | 2.23e-25 | 108 |
MS.gene74009.t1 | MTR_2g097390 | 26.615 | 387 | 253 | 13 | 28 | 404 | 275 | 640 | 8.16e-25 | 107 |
MS.gene74009.t1 | MTR_4g076140 | 32.051 | 234 | 135 | 6 | 14 | 243 | 34 | 247 | 1.24e-24 | 105 |
MS.gene74009.t1 | MTR_5g009080 | 31.760 | 233 | 135 | 7 | 15 | 243 | 43 | 255 | 5.62e-24 | 103 |
MS.gene74009.t1 | MTR_2g034280 | 24.250 | 400 | 278 | 11 | 13 | 404 | 192 | 574 | 7.12e-24 | 104 |
MS.gene74009.t1 | MTR_5g015490 | 27.930 | 401 | 242 | 16 | 27 | 404 | 113 | 489 | 7.63e-24 | 103 |
MS.gene74009.t1 | MTR_2g097350 | 25.831 | 391 | 251 | 15 | 28 | 404 | 274 | 639 | 3.34e-23 | 102 |
MS.gene74009.t1 | MTR_2g097310 | 24.163 | 418 | 277 | 12 | 8 | 405 | 241 | 638 | 3.75e-23 | 102 |
MS.gene74009.t1 | MTR_2g097380 | 24.370 | 357 | 215 | 10 | 58 | 405 | 251 | 561 | 4.80e-22 | 98.6 |
MS.gene74009.t1 | MTR_7g109580 | 24.129 | 402 | 265 | 15 | 17 | 404 | 178 | 553 | 2.70e-21 | 96.3 |
MS.gene74009.t1 | MTR_4g026485 | 25.195 | 385 | 252 | 14 | 29 | 406 | 270 | 625 | 1.81e-20 | 94.0 |
MS.gene74009.t1 | MTR_7g069740 | 26.265 | 415 | 255 | 18 | 9 | 404 | 201 | 583 | 4.28e-16 | 80.5 |
MS.gene74009.t1 | MTR_2g089100 | 24.249 | 433 | 283 | 13 | 6 | 405 | 23 | 443 | 1.07e-14 | 75.9 |
MS.gene74009.t1 | MTR_1g086970 | 22.005 | 409 | 278 | 12 | 17 | 407 | 95 | 480 | 2.90e-14 | 74.7 |
MS.gene74009.t1 | MTR_7g057230 | 27.097 | 310 | 197 | 10 | 106 | 404 | 365 | 656 | 5.82e-14 | 74.3 |
MS.gene74009.t1 | MTR_8g020840 | 23.929 | 397 | 264 | 14 | 27 | 404 | 170 | 547 | 1.12e-12 | 70.1 |
MS.gene74009.t1 | MTR_4g095500 | 24.533 | 428 | 255 | 18 | 27 | 404 | 58 | 467 | 1.11e-11 | 66.6 |
MS.gene74009.t1 | MTR_6g047750 | 25.381 | 394 | 248 | 15 | 29 | 404 | 296 | 661 | 3.79e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74009.t1 | AT4G08250 | 56.599 | 394 | 158 | 7 | 14 | 404 | 93 | 476 | 7.49e-146 | 424 |
MS.gene74009.t1 | AT3G54220 | 36.476 | 403 | 224 | 13 | 12 | 408 | 277 | 653 | 2.41e-55 | 194 |
MS.gene74009.t1 | AT5G41920 | 36.070 | 402 | 219 | 14 | 12 | 404 | 27 | 399 | 3.44e-53 | 182 |
MS.gene74009.t1 | AT3G03450 | 34.103 | 390 | 228 | 13 | 22 | 404 | 177 | 544 | 1.71e-51 | 181 |
MS.gene74009.t1 | AT5G17490 | 35.088 | 399 | 224 | 15 | 19 | 410 | 151 | 521 | 3.88e-50 | 177 |
MS.gene74009.t1 | AT1G66350 | 32.234 | 394 | 219 | 15 | 22 | 404 | 149 | 505 | 3.29e-46 | 166 |
MS.gene74009.t1 | AT2G01570 | 32.997 | 397 | 228 | 16 | 17 | 404 | 213 | 580 | 2.80e-45 | 165 |
MS.gene74009.t1 | AT1G14920 | 31.566 | 396 | 235 | 14 | 17 | 404 | 161 | 528 | 3.30e-44 | 161 |
MS.gene74009.t1 | AT5G48150 | 31.070 | 383 | 241 | 10 | 29 | 404 | 123 | 489 | 1.29e-42 | 156 |
MS.gene74009.t1 | AT5G48150 | 31.070 | 383 | 241 | 10 | 29 | 404 | 123 | 489 | 1.29e-42 | 156 |
MS.gene74009.t1 | AT5G48150 | 31.070 | 383 | 241 | 10 | 29 | 404 | 123 | 489 | 1.29e-42 | 156 |
MS.gene74009.t1 | AT5G48150 | 31.070 | 383 | 241 | 10 | 29 | 404 | 123 | 489 | 1.29e-42 | 156 |
MS.gene74009.t1 | AT2G04890 | 31.139 | 395 | 241 | 13 | 16 | 404 | 43 | 412 | 9.24e-42 | 152 |
MS.gene74009.t1 | AT1G55580 | 31.771 | 384 | 209 | 10 | 61 | 404 | 74 | 444 | 8.84e-41 | 150 |
MS.gene74009.t1 | AT4G17230 | 32.494 | 397 | 228 | 12 | 23 | 404 | 153 | 524 | 8.93e-41 | 152 |
MS.gene74009.t1 | AT4G17230 | 32.494 | 397 | 228 | 12 | 23 | 404 | 153 | 524 | 8.93e-41 | 152 |
MS.gene74009.t1 | AT1G50600 | 30.939 | 362 | 230 | 8 | 49 | 404 | 178 | 525 | 1.26e-40 | 151 |
MS.gene74009.t1 | AT1G50600 | 31.507 | 365 | 224 | 10 | 49 | 404 | 249 | 596 | 4.83e-40 | 150 |
MS.gene74009.t1 | AT1G50600 | 31.215 | 362 | 229 | 8 | 49 | 404 | 253 | 600 | 5.44e-40 | 150 |
MS.gene74009.t1 | AT5G66770 | 30.025 | 403 | 265 | 9 | 5 | 404 | 195 | 583 | 1.03e-38 | 147 |
MS.gene74009.t1 | AT3G50650 | 31.694 | 366 | 220 | 10 | 50 | 404 | 195 | 541 | 4.95e-38 | 144 |
MS.gene74009.t1 | AT1G63100 | 29.268 | 410 | 246 | 13 | 18 | 405 | 242 | 629 | 2.24e-34 | 135 |
MS.gene74009.t1 | AT1G63100 | 29.268 | 410 | 246 | 13 | 18 | 405 | 267 | 654 | 2.62e-34 | 135 |
MS.gene74009.t1 | AT1G21450 | 28.792 | 389 | 246 | 13 | 27 | 404 | 224 | 592 | 2.31e-32 | 129 |
MS.gene74009.t1 | AT4G37650 | 28.283 | 396 | 252 | 12 | 28 | 404 | 146 | 528 | 2.96e-30 | 122 |
MS.gene74009.t1 | AT4G36710 | 29.380 | 371 | 227 | 13 | 44 | 404 | 139 | 484 | 1.27e-28 | 117 |
MS.gene74009.t1 | AT3G60630 | 28.362 | 409 | 261 | 11 | 13 | 406 | 232 | 623 | 2.89e-28 | 117 |
MS.gene74009.t1 | AT3G46600 | 26.303 | 403 | 237 | 13 | 27 | 404 | 3 | 370 | 3.39e-28 | 114 |
MS.gene74009.t1 | AT2G29065 | 27.318 | 399 | 247 | 11 | 28 | 405 | 252 | 628 | 3.73e-28 | 117 |
MS.gene74009.t1 | AT3G46600 | 26.303 | 403 | 237 | 13 | 27 | 404 | 211 | 578 | 1.25e-27 | 115 |
MS.gene74009.t1 | AT3G46600 | 25.829 | 422 | 251 | 14 | 8 | 404 | 162 | 546 | 1.71e-27 | 114 |
MS.gene74009.t1 | AT1G07530 | 26.585 | 410 | 269 | 13 | 7 | 405 | 377 | 765 | 7.09e-27 | 113 |
MS.gene74009.t1 | AT2G29060 | 26.316 | 399 | 256 | 14 | 25 | 407 | 281 | 657 | 1.22e-26 | 112 |
MS.gene74009.t1 | AT2G29060 | 26.316 | 399 | 256 | 14 | 25 | 407 | 318 | 694 | 1.38e-26 | 112 |
MS.gene74009.t1 | AT5G59450 | 26.131 | 398 | 252 | 12 | 25 | 404 | 224 | 597 | 7.45e-26 | 110 |
MS.gene74009.t1 | AT2G45160 | 27.543 | 403 | 241 | 16 | 25 | 406 | 268 | 640 | 7.97e-25 | 107 |
MS.gene74009.t1 | AT1G07520 | 24.823 | 423 | 278 | 9 | 2 | 405 | 128 | 529 | 9.35e-25 | 106 |
MS.gene74009.t1 | AT1G07520 | 24.823 | 423 | 278 | 9 | 2 | 405 | 128 | 529 | 9.35e-25 | 106 |
MS.gene74009.t1 | AT1G07520 | 24.700 | 417 | 286 | 8 | 2 | 405 | 292 | 693 | 1.66e-24 | 106 |
MS.gene74009.t1 | AT1G07520 | 24.700 | 417 | 286 | 8 | 2 | 405 | 293 | 694 | 1.72e-24 | 106 |
MS.gene74009.t1 | AT4G00150 | 28.198 | 383 | 238 | 12 | 29 | 408 | 209 | 557 | 1.07e-23 | 103 |
MS.gene74009.t1 | AT1G50420 | 32.174 | 230 | 132 | 7 | 19 | 243 | 48 | 258 | 3.65e-23 | 101 |
MS.gene74009.t1 | AT1G50420 | 30.263 | 152 | 103 | 3 | 256 | 406 | 331 | 480 | 2.69e-12 | 68.6 |
MS.gene74009.t1 | AT2G37650 | 25.450 | 389 | 261 | 11 | 25 | 404 | 344 | 712 | 1.21e-22 | 100 |
MS.gene74009.t1 | AT2G37650 | 25.450 | 389 | 261 | 11 | 25 | 404 | 332 | 700 | 1.28e-22 | 100 |
MS.gene74009.t1 | AT5G52510 | 27.554 | 323 | 201 | 10 | 102 | 404 | 330 | 639 | 9.55e-17 | 82.8 |
MS.gene74009.t1 | AT3G49950 | 25.000 | 400 | 263 | 14 | 27 | 407 | 29 | 410 | 2.78e-15 | 77.4 |
MS.gene74009.t1 | AT3G13840 | 25.558 | 403 | 269 | 11 | 10 | 404 | 130 | 509 | 1.45e-14 | 75.9 |
Find 137 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGGGTTTCCTATGAATAAA+TGG | 0.181822 | 5.3:-46659505 | MS.gene74009:CDS |
GACTCTTGTTTGTGCCTGTT+AGG | 0.230972 | 5.3:+46660311 | None:intergenic |
TTGTCAAGCAAAGTTGTTAT+TGG | 0.254379 | 5.3:-46659321 | MS.gene74009:CDS |
GTTTATTTAACGATGGGTAT+AGG | 0.263361 | 5.3:-46659298 | MS.gene74009:CDS |
TTTATTTAACGATGGGTATA+GGG | 0.268630 | 5.3:-46659297 | MS.gene74009:CDS |
CGGTTCCGTTTAGCAGAGTT+TGG | 0.274447 | 5.3:+46660188 | None:intergenic |
TTTGCCACTGTTCAGGAAAC+TGG | 0.295594 | 5.3:-46659854 | MS.gene74009:CDS |
AGGAGCAAGAGAGGAGTTCT+TGG | 0.324248 | 5.3:-46659400 | MS.gene74009:CDS |
ATCGTCCTTTGCCACTGTTC+AGG | 0.328568 | 5.3:-46659861 | MS.gene74009:CDS |
GGGGAGTGGTTGGGTGTGGA+AGG | 0.333319 | 5.3:-46659377 | MS.gene74009:CDS |
ATCACTGATGCAGGCTTTGT+GGG | 0.334159 | 5.3:-46659581 | MS.gene74009:CDS |
CCGTCTAGTGCACCTCCTTA+TGG | 0.339880 | 5.3:-46660347 | MS.gene74009:CDS |
GGTAACAATAAGTTGGTGTT+AGG | 0.342092 | 5.3:-46659263 | MS.gene74009:CDS |
TGTCAAGCAAAGTTGTTATT+GGG | 0.347692 | 5.3:-46659320 | MS.gene74009:CDS |
TTGAACGGTGCCAAGGAGTT+AGG | 0.348949 | 5.3:-46659644 | MS.gene74009:CDS |
CATCACTGATGCAGGCTTTG+TGG | 0.352228 | 5.3:-46659582 | MS.gene74009:CDS |
ATTTGCCACATCTTAGTTAC+CGG | 0.358640 | 5.3:-46659691 | MS.gene74009:CDS |
AGGCTTTGTGGGTTTGTTCA+TGG | 0.365262 | 5.3:-46659570 | MS.gene74009:CDS |
GTTTGCTTTCTGCTTCTGTT+TGG | 0.368542 | 5.3:-46659226 | MS.gene74009:CDS |
CTCCTAGCCCATTTATTCAT+AGG | 0.371100 | 5.3:+46659497 | None:intergenic |
GCGGCAGCGGAGGCCCTAAC+AGG | 0.386266 | 5.3:-46660325 | MS.gene74009:CDS |
CATAGTGGACTTTGATATCA+TGG | 0.386901 | 5.3:-46660005 | MS.gene74009:CDS |
ACAATAAGTTGGTGTTAGGT+TGG | 0.398047 | 5.3:-46659259 | MS.gene74009:CDS |
TTTCATGAGTAACAGCTTCA+AGG | 0.400010 | 5.3:+46660038 | None:intergenic |
ATGTATGACTCGTTCGAGGC+TGG | 0.402016 | 5.3:-46659524 | MS.gene74009:CDS |
TGGGTATAGGGTGGAAGAGT+TGG | 0.402705 | 5.3:-46659285 | MS.gene74009:CDS |
CGTCAAGTTTGCTCATTTCA+CGG | 0.410498 | 5.3:-46660074 | MS.gene74009:CDS |
ACTCTTGTTTGTGCCTGTTA+GGG | 0.415722 | 5.3:+46660312 | None:intergenic |
GGGAGTGGTTGGGTGTGGAA+GGG | 0.418452 | 5.3:-46659376 | MS.gene74009:CDS |
TGTATGACTCGTTCGAGGCT+GGG | 0.428573 | 5.3:-46659523 | MS.gene74009:CDS |
GGGCCTCCGCTGCCGCCATA+AGG | 0.429881 | 5.3:+46660332 | None:intergenic |
GGGTATAGGGTGGAAGAGTT+GGG | 0.434315 | 5.3:-46659284 | MS.gene74009:CDS |
TGCGAAGATGTGGGCCCGGC+AGG | 0.434472 | 5.3:+46659930 | None:intergenic |
GGAGCAAGAGAGGAGTTCTT+GGG | 0.440358 | 5.3:-46659399 | MS.gene74009:CDS |
CCTCCTTATGGCGGCAGCGG+AGG | 0.448204 | 5.3:-46660335 | MS.gene74009:CDS |
GCCACTGAGCCCATTATTCG+TGG | 0.453840 | 5.3:+46659449 | None:intergenic |
CACGACGGAGGAGGAGGAGG+AGG | 0.458831 | 5.3:-46660389 | MS.gene74009:CDS |
TCGCGAAAAGAAGGCCTGCC+GGG | 0.460380 | 5.3:-46659944 | MS.gene74009:CDS |
GGAGGAGGAGGATGACAGAA+AGG | 0.460604 | 5.3:-46660374 | MS.gene74009:CDS |
AAGCTGTTACTCATGAAAGA+AGG | 0.464529 | 5.3:-46660033 | MS.gene74009:CDS |
TTCCACGACGGAGGAGGAGG+AGG | 0.471274 | 5.3:-46660392 | MS.gene74009:CDS |
TAACAGCTTCAAGGATAGCT+TGG | 0.472914 | 5.3:+46660047 | None:intergenic |
GAGTTTGTGGTGACCACAAT+CGG | 0.474218 | 5.3:+46660168 | None:intergenic |
CTCCGTCGTGGAATTTGAGT+TGG | 0.475797 | 5.3:+46660402 | None:intergenic |
ACATTAGTCGAGGAGGAAGT+AGG | 0.480496 | 5.3:-46659608 | MS.gene74009:CDS |
TATCATGGAAGGGGCCCAAT+GGG | 0.484349 | 5.3:-46659990 | MS.gene74009:CDS |
GAGCTTTGTTCCTAACTCCT+TGG | 0.485022 | 5.3:+46659634 | None:intergenic |
GCCCTCCAAACTCTGCTAAA+CGG | 0.486218 | 5.3:-46660193 | MS.gene74009:CDS |
TGGCTCAAGTGATATTGATT+CGG | 0.487459 | 5.3:-46660282 | MS.gene74009:CDS |
GCACCTCCTTATGGCGGCAG+CGG | 0.487716 | 5.3:-46660338 | MS.gene74009:CDS |
TGAGAGTATGTCTGTTTGGT+GGG | 0.489093 | 5.3:+46660129 | None:intergenic |
ATCGCGAAAAGAAGGCCTGC+CGG | 0.491290 | 5.3:-46659945 | MS.gene74009:CDS |
ACAACCTTTGCTGCTTCCGT+TGG | 0.496161 | 5.3:-46659821 | MS.gene74009:CDS |
TCACTTTCATCGCGAAAAGA+AGG | 0.496428 | 5.3:-46659953 | MS.gene74009:CDS |
TATTGGGTTTATTTAACGAT+GGG | 0.498402 | 5.3:-46659304 | MS.gene74009:CDS |
CAGTGAGAAGACAGAGTTTG+TGG | 0.500911 | 5.3:+46660155 | None:intergenic |
TCTTCATTAAAGCTTGTTCG+TGG | 0.502342 | 5.3:-46659743 | MS.gene74009:CDS |
CCTCCGCTGCCGCCATAAGG+AGG | 0.504163 | 5.3:+46660335 | None:intergenic |
AGAGTTGGGTAACAATAAGT+TGG | 0.507514 | 5.3:-46659270 | MS.gene74009:CDS |
AGGCTGAGAGTATGTCTGTT+TGG | 0.507765 | 5.3:+46660125 | None:intergenic |
CTGCTAAACGGAACCGATTG+TGG | 0.507905 | 5.3:-46660181 | MS.gene74009:CDS |
TGGGTTTCCTATGAATAAAT+GGG | 0.510723 | 5.3:-46659504 | MS.gene74009:CDS |
GAGCAAGAGAGGAGTTCTTG+GGG | 0.512566 | 5.3:-46659398 | MS.gene74009:CDS |
CACAAAGCCTGCATCAGTGA+TGG | 0.513600 | 5.3:+46659583 | None:intergenic |
TTGAATGAGTGAAGCCCATT+GGG | 0.514305 | 5.3:+46659976 | None:intergenic |
AGTGATATTGATTCGGCTCA+AGG | 0.514796 | 5.3:-46660275 | MS.gene74009:CDS |
CACAAACAAGAGTCACCATC+TGG | 0.516410 | 5.3:-46660302 | MS.gene74009:CDS |
TCCGTTTAGCAGAGTTTGGA+GGG | 0.520521 | 5.3:+46660192 | None:intergenic |
CTCAAATTCCACGACGGAGG+AGG | 0.521407 | 5.3:-46660398 | MS.gene74009:CDS |
TTGGGTGTGGAAGGGTTCAA+AGG | 0.525480 | 5.3:-46659368 | MS.gene74009:CDS |
TTCCGTTTAGCAGAGTTTGG+AGG | 0.528085 | 5.3:+46660191 | None:intergenic |
ATAACAACTTTGCTTGACAA+TGG | 0.528206 | 5.3:+46659324 | None:intergenic |
CACAAACTCTGTCTTCTCAC+TGG | 0.528238 | 5.3:-46660154 | MS.gene74009:CDS |
TGAAAGAAGGGTTCACATAG+TGG | 0.529945 | 5.3:-46660020 | MS.gene74009:CDS |
TGAGTTGGACATGTCTCCCA+TGG | 0.535777 | 5.3:+46660417 | None:intergenic |
AAAGGAGTTAACATAAGCTA+TGG | 0.536826 | 5.3:-46659350 | MS.gene74009:CDS |
TTATTGGGTTTATTTAACGA+TGG | 0.539610 | 5.3:-46659305 | MS.gene74009:CDS |
CTGAGAGTATGTCTGTTTGG+TGG | 0.539651 | 5.3:+46660128 | None:intergenic |
AGCGATGTATGACTCGTTCG+AGG | 0.539838 | 5.3:-46659528 | MS.gene74009:CDS |
GTGAAGAGGAGGAGCAAGAG+AGG | 0.542655 | 5.3:-46659409 | MS.gene74009:CDS |
GTAGGGCCCATCACTGATGC+AGG | 0.543816 | 5.3:-46659590 | MS.gene74009:CDS |
GAGGAGGAGGATGACAGAAA+GGG | 0.544247 | 5.3:-46660373 | MS.gene74009:CDS |
AAATTCCACGACGGAGGAGG+AGG | 0.545632 | 5.3:-46660395 | MS.gene74009:CDS |
ACAAAGCCTGCATCAGTGAT+GGG | 0.550334 | 5.3:+46659584 | None:intergenic |
ATTAAAGCTTGTTCGTGGCG+AGG | 0.550376 | 5.3:-46659738 | MS.gene74009:CDS |
TTCCTATGAATAAATGGGCT+AGG | 0.550588 | 5.3:-46659499 | MS.gene74009:CDS |
TCTATTGCTTCATTCTTGAA+CGG | 0.552156 | 5.3:-46659659 | MS.gene74009:CDS |
CTCCATGTTGGTGCCGTGAG+TGG | 0.552588 | 5.3:+46660240 | None:intergenic |
ACGAACAAGCTTTAATGAAG+AGG | 0.554200 | 5.3:+46659745 | None:intergenic |
AGTTTCCTGAACAGTGGCAA+AGG | 0.558363 | 5.3:+46659856 | None:intergenic |
TTCATTCTTGAACGGTGCCA+AGG | 0.558389 | 5.3:-46659651 | MS.gene74009:CDS |
CATTAGTCGAGGAGGAAGTA+GGG | 0.559643 | 5.3:-46659607 | MS.gene74009:CDS |
GACTTAGTGTCCTCCACTCA+CGG | 0.564053 | 5.3:-46660253 | MS.gene74009:CDS |
TTGTCCAACGGAAGCAGCAA+AGG | 0.565983 | 5.3:+46659817 | None:intergenic |
AGCTGTTACTCATGAAAGAA+GGG | 0.566179 | 5.3:-46660032 | MS.gene74009:CDS |
TTTGCCACATCTTAGTTACC+GGG | 0.572604 | 5.3:-46659690 | MS.gene74009:CDS |
GTGGACTTTGATATCATGGA+AGG | 0.574432 | 5.3:-46660001 | MS.gene74009:CDS |
AAGCAATAGAATCTGAAGCC+CGG | 0.574832 | 5.3:+46659672 | None:intergenic |
ATTGAATGAGTGAAGCCCAT+TGG | 0.575421 | 5.3:+46659975 | None:intergenic |
CATGTCTTGAAGAAGCTGAA+AGG | 0.576740 | 5.3:+46660105 | None:intergenic |
AAATGAGCAAACTTGACGTA+AGG | 0.579384 | 5.3:+46660079 | None:intergenic |
TAAATGGGCTAGGAGTTTAG+TGG | 0.580272 | 5.3:-46659489 | MS.gene74009:CDS |
GGACTTTGATATCATGGAAG+GGG | 0.580763 | 5.3:-46659999 | MS.gene74009:CDS |
ATATCATGGAAGGGGCCCAA+TGG | 0.582076 | 5.3:-46659991 | MS.gene74009:CDS |
AGAAACAAAGAACGTGGCAA+TGG | 0.585187 | 5.3:-46659893 | MS.gene74009:CDS |
CTCCACTCACGGCACCAACA+TGG | 0.585629 | 5.3:-46660242 | MS.gene74009:CDS |
GTGATGCGAAGATGTGGGCC+CGG | 0.587438 | 5.3:+46659926 | None:intergenic |
CCACTGAGCCCATTATTCGT+GGG | 0.587441 | 5.3:+46659450 | None:intergenic |
ATTTAACGATGGGTATAGGG+TGG | 0.589148 | 5.3:-46659294 | MS.gene74009:CDS |
TCAATATCACTTGAGCCAGA+TGG | 0.599918 | 5.3:+46660287 | None:intergenic |
CTGTTCAGGAAACTGGAAGA+AGG | 0.600566 | 5.3:-46659847 | MS.gene74009:CDS |
CCATAAGGAGGTGCACTAGA+CGG | 0.601550 | 5.3:+46660347 | None:intergenic |
TAGCAGAGTTTGGAGGGCGT+CGG | 0.602737 | 5.3:+46660198 | None:intergenic |
GTTGTACATGACTGGTGAAG+AGG | 0.605566 | 5.3:-46659423 | MS.gene74009:CDS |
AATGCAGTGATGCGAAGATG+TGG | 0.609707 | 5.3:+46659920 | None:intergenic |
CATGTTGGTGCCGTGAGTGG+AGG | 0.611646 | 5.3:+46660243 | None:intergenic |
TGGACTTTGATATCATGGAA+GGG | 0.613948 | 5.3:-46660000 | MS.gene74009:CDS |
TCTTCCAGTTTCCTGAACAG+TGG | 0.616454 | 5.3:+46659850 | None:intergenic |
CGCAGCGAGTCTCTCCATGT+TGG | 0.618231 | 5.3:+46660228 | None:intergenic |
GCAAGAGAGGAGTTCTTGGG+GGG | 0.619393 | 5.3:-46659396 | MS.gene74009:CDS |
AAAAGTGAACGGTTGTCCAA+CGG | 0.621563 | 5.3:+46659805 | None:intergenic |
GTACATGACTGGTGAAGAGG+AGG | 0.631690 | 5.3:-46659420 | MS.gene74009:CDS |
CTACATTGATGAAAAGTGAA+CGG | 0.641838 | 5.3:+46659794 | None:intergenic |
TTCACCAGTCATGTACAACT+CGG | 0.643539 | 5.3:+46659427 | None:intergenic |
GTGGCCGAGTTGTACATGAC+TGG | 0.650298 | 5.3:-46659431 | MS.gene74009:CDS |
GAAGCCCGGTAACTAAGATG+TGG | 0.661574 | 5.3:+46659686 | None:intergenic |
GAGAGTATGTCTGTTTGGTG+GGG | 0.663577 | 5.3:+46660130 | None:intergenic |
GCTCGTGACATTAGTCGAGG+AGG | 0.670792 | 5.3:-46659615 | MS.gene74009:CDS |
CCCACGAATAATGGGCTCAG+TGG | 0.676277 | 5.3:-46659450 | MS.gene74009:CDS |
AAAGCTCGTGACATTAGTCG+AGG | 0.678929 | 5.3:-46659618 | MS.gene74009:CDS |
AGCAAGAGAGGAGTTCTTGG+GGG | 0.679139 | 5.3:-46659397 | MS.gene74009:CDS |
ATGCAGTGATGCGAAGATGT+GGG | 0.688648 | 5.3:+46659921 | None:intergenic |
TAAGGAGGTGCACTAGACGG+AGG | 0.697542 | 5.3:+46660350 | None:intergenic |
CAACTCAAATTCCACGACGG+AGG | 0.699012 | 5.3:-46660401 | MS.gene74009:CDS |
TCTAGTGCACCTCCTTATGG+CGG | 0.711985 | 5.3:-46660344 | MS.gene74009:CDS |
TTGTCTAGAAACAAAGAACG+TGG | 0.726054 | 5.3:-46659899 | MS.gene74009:CDS |
GTCCAACTCAAATTCCACGA+CGG | 0.726679 | 5.3:-46660404 | MS.gene74009:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TATTGGGTTTATTTAACGAT+GGG | - | chr5.3:46660304-46660323 | MS.gene74009:CDS | 25.0% |
! | TTATTGGGTTTATTTAACGA+TGG | - | chr5.3:46660303-46660322 | MS.gene74009:CDS | 25.0% |
! | TTTATTTAACGATGGGTATA+GGG | - | chr5.3:46660311-46660330 | MS.gene74009:CDS | 25.0% |
AAAGGAGTTAACATAAGCTA+TGG | - | chr5.3:46660258-46660277 | MS.gene74009:CDS | 30.0% | |
ATAACAACTTTGCTTGACAA+TGG | + | chr5.3:46660287-46660306 | None:intergenic | 30.0% | |
CTACATTGATGAAAAGTGAA+CGG | + | chr5.3:46659817-46659836 | None:intergenic | 30.0% | |
GTTTATTTAACGATGGGTAT+AGG | - | chr5.3:46660310-46660329 | MS.gene74009:CDS | 30.0% | |
TCTATTGCTTCATTCTTGAA+CGG | - | chr5.3:46659949-46659968 | MS.gene74009:CDS | 30.0% | |
TGGGTTTCCTATGAATAAAT+GGG | - | chr5.3:46660104-46660123 | MS.gene74009:CDS | 30.0% | |
TTGTCAAGCAAAGTTGTTAT+TGG | - | chr5.3:46660287-46660306 | MS.gene74009:CDS | 30.0% | |
! | TGTCAAGCAAAGTTGTTATT+GGG | - | chr5.3:46660288-46660307 | MS.gene74009:CDS | 30.0% |
! | TTAGTGGAGCAAGTATTTTT+AGG | - | chr5.3:46660135-46660154 | MS.gene74009:CDS | 30.0% |
AAATGAGCAAACTTGACGTA+AGG | + | chr5.3:46659532-46659551 | None:intergenic | 35.0% | |
AAGCTGTTACTCATGAAAGA+AGG | - | chr5.3:46659575-46659594 | MS.gene74009:CDS | 35.0% | |
AGAGTTGGGTAACAATAAGT+TGG | - | chr5.3:46660338-46660357 | MS.gene74009:CDS | 35.0% | |
AGCTGTTACTCATGAAAGAA+GGG | - | chr5.3:46659576-46659595 | MS.gene74009:CDS | 35.0% | |
ATTTGCCACATCTTAGTTAC+CGG | - | chr5.3:46659917-46659936 | MS.gene74009:CDS | 35.0% | |
CTGGGTTTCCTATGAATAAA+TGG | - | chr5.3:46660103-46660122 | MS.gene74009:CDS | 35.0% | |
TGGACTTTGATATCATGGAA+GGG | - | chr5.3:46659608-46659627 | MS.gene74009:CDS | 35.0% | |
TTGTCTAGAAACAAAGAACG+TGG | - | chr5.3:46659709-46659728 | MS.gene74009:CDS | 35.0% | |
TTTCATGAGTAACAGCTTCA+AGG | + | chr5.3:46659573-46659592 | None:intergenic | 35.0% | |
! | ACGAACAAGCTTTAATGAAG+AGG | + | chr5.3:46659866-46659885 | None:intergenic | 35.0% |
! | CACTTTTCATCAATGTAGGT+TGG | - | chr5.3:46659819-46659838 | MS.gene74009:CDS | 35.0% |
! | TCTTCATTAAAGCTTGTTCG+TGG | - | chr5.3:46659865-46659884 | MS.gene74009:CDS | 35.0% |
! | TGGCTCAAGTGATATTGATT+CGG | - | chr5.3:46659326-46659345 | MS.gene74009:CDS | 35.0% |
! | TTCCTATGAATAAATGGGCT+AGG | - | chr5.3:46660109-46660128 | MS.gene74009:CDS | 35.0% |
!! | ACAATAAGTTGGTGTTAGGT+TGG | - | chr5.3:46660349-46660368 | MS.gene74009:CDS | 35.0% |
!! | ATTTTTAGGCCCACGAATAA+TGG | - | chr5.3:46660149-46660168 | MS.gene74009:CDS | 35.0% |
!! | CATAGTGGACTTTGATATCA+TGG | - | chr5.3:46659603-46659622 | MS.gene74009:CDS | 35.0% |
!! | CGTTCACTTTTCATCAATGT+AGG | - | chr5.3:46659815-46659834 | MS.gene74009:CDS | 35.0% |
!! | GGTAACAATAAGTTGGTGTT+AGG | - | chr5.3:46660345-46660364 | MS.gene74009:CDS | 35.0% |
!! | TTTTTAGGCCCACGAATAAT+GGG | - | chr5.3:46660150-46660169 | MS.gene74009:CDS | 35.0% |
AAAAGTGAACGGTTGTCCAA+CGG | + | chr5.3:46659806-46659825 | None:intergenic | 40.0% | |
AGAAACAAAGAACGTGGCAA+TGG | - | chr5.3:46659715-46659734 | MS.gene74009:CDS | 40.0% | |
ATTGAATGAGTGAAGCCCAT+TGG | + | chr5.3:46659636-46659655 | None:intergenic | 40.0% | |
ATTTAACGATGGGTATAGGG+TGG | - | chr5.3:46660314-46660333 | MS.gene74009:CDS | 40.0% | |
CATGTCTTGAAGAAGCTGAA+AGG | + | chr5.3:46659506-46659525 | None:intergenic | 40.0% | |
CTCCTAGCCCATTTATTCAT+AGG | + | chr5.3:46660114-46660133 | None:intergenic | 40.0% | |
GGACTTTGATATCATGGAAG+GGG | - | chr5.3:46659609-46659628 | MS.gene74009:CDS | 40.0% | |
GTGGACTTTGATATCATGGA+AGG | - | chr5.3:46659607-46659626 | MS.gene74009:CDS | 40.0% | |
GTTTGCTTTCTGCTTCTGTT+TGG | - | chr5.3:46660382-46660401 | MS.gene74009:CDS | 40.0% | |
TAACAGCTTCAAGGATAGCT+TGG | + | chr5.3:46659564-46659583 | None:intergenic | 40.0% | |
TCAATATCACTTGAGCCAGA+TGG | + | chr5.3:46659324-46659343 | None:intergenic | 40.0% | |
TCACTTTCATCGCGAAAAGA+AGG | - | chr5.3:46659655-46659674 | MS.gene74009:CDS | 40.0% | |
TGAAAGAAGGGTTCACATAG+TGG | - | chr5.3:46659588-46659607 | MS.gene74009:CDS | 40.0% | |
TTCACCAGTCATGTACAACT+CGG | + | chr5.3:46660184-46660203 | None:intergenic | 40.0% | |
TTGAATGAGTGAAGCCCATT+GGG | + | chr5.3:46659635-46659654 | None:intergenic | 40.0% | |
TTTGCCACATCTTAGTTACC+GGG | - | chr5.3:46659918-46659937 | MS.gene74009:CDS | 40.0% | |
! | AAGCAATAGAATCTGAAGCC+CGG | + | chr5.3:46659939-46659958 | None:intergenic | 40.0% |
! | ACTCTTGTTTGTGCCTGTTA+GGG | + | chr5.3:46659299-46659318 | None:intergenic | 40.0% |
! | CGTCAAGTTTGCTCATTTCA+CGG | - | chr5.3:46659534-46659553 | MS.gene74009:CDS | 40.0% |
! | TGAGAGTATGTCTGTTTGGT+GGG | + | chr5.3:46659482-46659501 | None:intergenic | 40.0% |
!! | AGTGATATTGATTCGGCTCA+AGG | - | chr5.3:46659333-46659352 | MS.gene74009:CDS | 40.0% |
!! | TAAATGGGCTAGGAGTTTAG+TGG | - | chr5.3:46660119-46660138 | MS.gene74009:CDS | 40.0% |
AAAGCTCGTGACATTAGTCG+AGG | - | chr5.3:46659990-46660009 | MS.gene74009:CDS | 45.0% | |
AATGCAGTGATGCGAAGATG+TGG | + | chr5.3:46659691-46659710 | None:intergenic | 45.0% | |
ACAAAGCCTGCATCAGTGAT+GGG | + | chr5.3:46660027-46660046 | None:intergenic | 45.0% | |
ACATTAGTCGAGGAGGAAGT+AGG | - | chr5.3:46660000-46660019 | MS.gene74009:CDS | 45.0% | |
AGTTTCCTGAACAGTGGCAA+AGG | + | chr5.3:46659755-46659774 | None:intergenic | 45.0% | |
ATGCAGTGATGCGAAGATGT+GGG | + | chr5.3:46659690-46659709 | None:intergenic | 45.0% | |
CACAAACAAGAGTCACCATC+TGG | - | chr5.3:46659306-46659325 | MS.gene74009:CDS | 45.0% | |
CACAAACTCTGTCTTCTCAC+TGG | - | chr5.3:46659454-46659473 | MS.gene74009:CDS | 45.0% | |
CAGTGAGAAGACAGAGTTTG+TGG | + | chr5.3:46659456-46659475 | None:intergenic | 45.0% | |
CATTAGTCGAGGAGGAAGTA+GGG | - | chr5.3:46660001-46660020 | MS.gene74009:CDS | 45.0% | |
CTGTTCAGGAAACTGGAAGA+AGG | - | chr5.3:46659761-46659780 | MS.gene74009:CDS | 45.0% | |
GAGTTTGTGGTGACCACAAT+CGG | + | chr5.3:46659443-46659462 | None:intergenic | 45.0% | |
GTCCAACTCAAATTCCACGA+CGG | - | chr5.3:46659204-46659223 | MS.gene74009:CDS | 45.0% | |
GTTGTACATGACTGGTGAAG+AGG | - | chr5.3:46660185-46660204 | MS.gene74009:CDS | 45.0% | |
TCCGTTTAGCAGAGTTTGGA+GGG | + | chr5.3:46659419-46659438 | None:intergenic | 45.0% | |
TCTTCCAGTTTCCTGAACAG+TGG | + | chr5.3:46659761-46659780 | None:intergenic | 45.0% | |
TTCCGTTTAGCAGAGTTTGG+AGG | + | chr5.3:46659420-46659439 | None:intergenic | 45.0% | |
TTTGCCACTGTTCAGGAAAC+TGG | - | chr5.3:46659754-46659773 | MS.gene74009:CDS | 45.0% | |
! | AGGCTGAGAGTATGTCTGTT+TGG | + | chr5.3:46659486-46659505 | None:intergenic | 45.0% |
! | AGGCTTTGTGGGTTTGTTCA+TGG | - | chr5.3:46660038-46660057 | MS.gene74009:CDS | 45.0% |
! | ATCACTGATGCAGGCTTTGT+GGG | - | chr5.3:46660027-46660046 | MS.gene74009:CDS | 45.0% |
! | ATTAAAGCTTGTTCGTGGCG+AGG | - | chr5.3:46659870-46659889 | MS.gene74009:CDS | 45.0% |
! | CTGAGAGTATGTCTGTTTGG+TGG | + | chr5.3:46659483-46659502 | None:intergenic | 45.0% |
! | GACTCTTGTTTGTGCCTGTT+AGG | + | chr5.3:46659300-46659319 | None:intergenic | 45.0% |
! | GAGAGTATGTCTGTTTGGTG+GGG | + | chr5.3:46659481-46659500 | None:intergenic | 45.0% |
! | TTCATTCTTGAACGGTGCCA+AGG | - | chr5.3:46659957-46659976 | MS.gene74009:CDS | 45.0% |
!! | GAGCTTTGTTCCTAACTCCT+TGG | + | chr5.3:46659977-46659996 | None:intergenic | 45.0% |
AGCAAGAGAGGAGTTCTTGG+GGG | - | chr5.3:46660211-46660230 | MS.gene74009:CDS | 50.0% | |
AGCGATGTATGACTCGTTCG+AGG | - | chr5.3:46660080-46660099 | MS.gene74009:CDS | 50.0% | |
AGGAGCAAGAGAGGAGTTCT+TGG | - | chr5.3:46660208-46660227 | MS.gene74009:CDS | 50.0% | |
ATATCATGGAAGGGGCCCAA+TGG | - | chr5.3:46659617-46659636 | MS.gene74009:CDS | 50.0% | |
ATCGTCCTTTGCCACTGTTC+AGG | - | chr5.3:46659747-46659766 | MS.gene74009:CDS | 50.0% | |
ATGTATGACTCGTTCGAGGC+TGG | - | chr5.3:46660084-46660103 | MS.gene74009:CDS | 50.0% | |
CAACTCAAATTCCACGACGG+AGG | - | chr5.3:46659207-46659226 | MS.gene74009:CDS | 50.0% | |
CACAAAGCCTGCATCAGTGA+TGG | + | chr5.3:46660028-46660047 | None:intergenic | 50.0% | |
CATCACTGATGCAGGCTTTG+TGG | - | chr5.3:46660026-46660045 | MS.gene74009:CDS | 50.0% | |
CCACTGAGCCCATTATTCGT+GGG | + | chr5.3:46660161-46660180 | None:intergenic | 50.0% | |
CGGTTCCGTTTAGCAGAGTT+TGG | + | chr5.3:46659423-46659442 | None:intergenic | 50.0% | |
CTCCGTCGTGGAATTTGAGT+TGG | + | chr5.3:46659209-46659228 | None:intergenic | 50.0% | |
CTGCTAAACGGAACCGATTG+TGG | - | chr5.3:46659427-46659446 | MS.gene74009:CDS | 50.0% | |
GAAGCCCGGTAACTAAGATG+TGG | + | chr5.3:46659925-46659944 | None:intergenic | 50.0% | |
GACTTAGTGTCCTCCACTCA+CGG | - | chr5.3:46659355-46659374 | MS.gene74009:CDS | 50.0% | |
GAGCAAGAGAGGAGTTCTTG+GGG | - | chr5.3:46660210-46660229 | MS.gene74009:CDS | 50.0% | |
GAGGAGGAGGATGACAGAAA+GGG | - | chr5.3:46659235-46659254 | MS.gene74009:CDS | 50.0% | |
GCCCTCCAAACTCTGCTAAA+CGG | - | chr5.3:46659415-46659434 | MS.gene74009:CDS | 50.0% | |
GGAGCAAGAGAGGAGTTCTT+GGG | - | chr5.3:46660209-46660228 | MS.gene74009:CDS | 50.0% | |
GGGTATAGGGTGGAAGAGTT+GGG | - | chr5.3:46660324-46660343 | MS.gene74009:CDS | 50.0% | |
GTACATGACTGGTGAAGAGG+AGG | - | chr5.3:46660188-46660207 | MS.gene74009:CDS | 50.0% | |
TATCATGGAAGGGGCCCAAT+GGG | - | chr5.3:46659618-46659637 | MS.gene74009:CDS | 50.0% | |
TCTAGTGCACCTCCTTATGG+CGG | - | chr5.3:46659264-46659283 | MS.gene74009:CDS | 50.0% | |
TGGGTATAGGGTGGAAGAGT+TGG | - | chr5.3:46660323-46660342 | MS.gene74009:CDS | 50.0% | |
TGTATGACTCGTTCGAGGCT+GGG | - | chr5.3:46660085-46660104 | MS.gene74009:CDS | 50.0% | |
TTGGGTGTGGAAGGGTTCAA+AGG | - | chr5.3:46660240-46660259 | MS.gene74009:CDS | 50.0% | |
TTGTCCAACGGAAGCAGCAA+AGG | + | chr5.3:46659794-46659813 | None:intergenic | 50.0% | |
! | ACAACCTTTGCTGCTTCCGT+TGG | - | chr5.3:46659787-46659806 | MS.gene74009:CDS | 50.0% |
! | CCATAAGGAGGTGCACTAGA+CGG | + | chr5.3:46659264-46659283 | None:intergenic | 50.0% |
! | TTGAACGGTGCCAAGGAGTT+AGG | - | chr5.3:46659964-46659983 | MS.gene74009:CDS | 50.0% |
AAATTCCACGACGGAGGAGG+AGG | - | chr5.3:46659213-46659232 | MS.gene74009:CDS | 55.0% | |
AGTTCTTGGGGGGAGTGGTT+GGG | - | chr5.3:46660222-46660241 | MS.gene74009:CDS | 55.0% | |
ATCGCGAAAAGAAGGCCTGC+CGG | - | chr5.3:46659663-46659682 | MS.gene74009:CDS | 55.0% | |
CCGTCTAGTGCACCTCCTTA+TGG | - | chr5.3:46659261-46659280 | MS.gene74009:CDS | 55.0% | |
CTCAAATTCCACGACGGAGG+AGG | - | chr5.3:46659210-46659229 | MS.gene74009:CDS | 55.0% | |
GCAAGAGAGGAGTTCTTGGG+GGG | - | chr5.3:46660212-46660231 | MS.gene74009:CDS | 55.0% | |
GCCACTGAGCCCATTATTCG+TGG | + | chr5.3:46660162-46660181 | None:intergenic | 55.0% | |
GCTCGTGACATTAGTCGAGG+AGG | - | chr5.3:46659993-46660012 | MS.gene74009:CDS | 55.0% | |
GGAGGAGGAGGATGACAGAA+AGG | - | chr5.3:46659234-46659253 | MS.gene74009:CDS | 55.0% | |
GTGAAGAGGAGGAGCAAGAG+AGG | - | chr5.3:46660199-46660218 | MS.gene74009:CDS | 55.0% | |
GTGGCCGAGTTGTACATGAC+TGG | - | chr5.3:46660177-46660196 | MS.gene74009:CDS | 55.0% | |
! | TAAGGAGGTGCACTAGACGG+AGG | + | chr5.3:46659261-46659280 | None:intergenic | 55.0% |
! | TAGCAGAGTTTGGAGGGCGT+CGG | + | chr5.3:46659413-46659432 | None:intergenic | 55.0% |
!! | CCCACGAATAATGGGCTCAG+TGG | - | chr5.3:46660158-46660177 | MS.gene74009:CDS | 55.0% |
AGAGGAGTTCTTGGGGGGAG+TGG | - | chr5.3:46660217-46660236 | MS.gene74009:CDS | 60.0% | |
CGCAGCGAGTCTCTCCATGT+TGG | + | chr5.3:46659383-46659402 | None:intergenic | 60.0% | |
CTCCACTCACGGCACCAACA+TGG | - | chr5.3:46659366-46659385 | MS.gene74009:CDS | 60.0% | |
GAGTTCTTGGGGGGAGTGGT+TGG | - | chr5.3:46660221-46660240 | MS.gene74009:CDS | 60.0% | |
GGGAGTGGTTGGGTGTGGAA+GGG | - | chr5.3:46660232-46660251 | MS.gene74009:CDS | 60.0% | |
GTAGGGCCCATCACTGATGC+AGG | - | chr5.3:46660018-46660037 | MS.gene74009:CDS | 60.0% | |
GTGATGCGAAGATGTGGGCC+CGG | + | chr5.3:46659685-46659704 | None:intergenic | 60.0% | |
TCGCGAAAAGAAGGCCTGCC+GGG | - | chr5.3:46659664-46659683 | MS.gene74009:CDS | 60.0% | |
!! | CATGTTGGTGCCGTGAGTGG+AGG | + | chr5.3:46659368-46659387 | None:intergenic | 60.0% |
!! | CTCCATGTTGGTGCCGTGAG+TGG | + | chr5.3:46659371-46659390 | None:intergenic | 60.0% |
GCACCTCCTTATGGCGGCAG+CGG | - | chr5.3:46659270-46659289 | MS.gene74009:CDS | 65.0% | |
GGGGAGTGGTTGGGTGTGGA+AGG | - | chr5.3:46660231-46660250 | MS.gene74009:CDS | 65.0% | |
TTCCACGACGGAGGAGGAGG+AGG | - | chr5.3:46659216-46659235 | MS.gene74009:CDS | 65.0% | |
TTGGGGGGAGTGGTTGGGTG+TGG | - | chr5.3:46660227-46660246 | MS.gene74009:CDS | 65.0% | |
CACGACGGAGGAGGAGGAGG+AGG | - | chr5.3:46659219-46659238 | MS.gene74009:CDS | 70.0% | |
CCTCCGCTGCCGCCATAAGG+AGG | + | chr5.3:46659276-46659295 | None:intergenic | 70.0% | |
CCTCCTTATGGCGGCAGCGG+AGG | - | chr5.3:46659273-46659292 | MS.gene74009:CDS | 70.0% | |
CTCCTCCTCCTCCTCCGTCG+TGG | + | chr5.3:46659221-46659240 | None:intergenic | 70.0% | |
GACGGAGGAGGAGGAGGAGG+AGG | - | chr5.3:46659222-46659241 | MS.gene74009:CDS | 70.0% | |
TGCGAAGATGTGGGCCCGGC+AGG | + | chr5.3:46659681-46659700 | None:intergenic | 70.0% | |
GCGGCAGCGGAGGCCCTAAC+AGG | - | chr5.3:46659283-46659302 | MS.gene74009:CDS | 75.0% | |
GGGCCTCCGCTGCCGCCATA+AGG | + | chr5.3:46659279-46659298 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 46659193 | 46660437 | 46659193 | ID=MS.gene74009 |
chr5.3 | mRNA | 46659193 | 46660437 | 46659193 | ID=MS.gene74009.t1;Parent=MS.gene74009 |
chr5.3 | exon | 46659193 | 46660437 | 46659193 | ID=MS.gene74009.t1.exon1;Parent=MS.gene74009.t1 |
chr5.3 | CDS | 46659193 | 46660437 | 46659193 | ID=cds.MS.gene74009.t1;Parent=MS.gene74009.t1 |
Gene Sequence |
Protein sequence |