AlfalfaGEDB | MS.gene74009

M. sativa cultivar XinJiangDaYe / MS.gene74009

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74009.t1	XP_003614758.2	98.2	394	6	1	22	414	115	508	3.20E-222	780.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74009.t1	Q5NE24	68.8	401	100	8	22	408	114	503	2.4e-146	520.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74009.t1	G7K8U7	98.2	394	6	1	22	414	113	506	2.3e-222	780.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene74009.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74009.t1	MTR_5g058860	97.831	415	6	2	1	414	94	506	0.0	835
MS.gene74009.t1	MTR_3g072710	68.949	409	100	9	15	408	107	503	0.0	538
MS.gene74009.t1	MTR_7g027190	36.691	417	210	17	14	406	288	674	4.43e-63	215
MS.gene74009.t1	MTR_8g093070	37.065	402	215	14	13	405	124	496	8.16e-63	210
MS.gene74009.t1	MTR_3g065980	34.069	408	210	15	22	404	166	539	1.17e-52	184
MS.gene74009.t1	MTR_7g074650	35.294	374	215	11	33	404	443	791	2.70e-52	187
MS.gene74009.t1	MTR_1g069725	32.754	403	238	10	6	406	93	464	3.47e-48	171
MS.gene74009.t1	MTR_4g076020	35.989	364	188	13	57	412	110	436	1.58e-47	168
MS.gene74009.t1	MTR_5g097480	30.848	389	241	11	25	404	174	543	2.67e-44	162
MS.gene74009.t1	MTR_1g096030	31.401	414	238	13	18	407	70	461	4.35e-43	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74009.t1	AT4G08250	56.599	394	158	7	14	404	93	476	7.49e-146	424
MS.gene74009.t1	AT3G54220	36.476	403	224	13	12	408	277	653	2.41e-55	194
MS.gene74009.t1	AT5G41920	36.070	402	219	14	12	404	27	399	3.44e-53	182
MS.gene74009.t1	AT3G03450	34.103	390	228	13	22	404	177	544	1.71e-51	181
MS.gene74009.t1	AT5G17490	35.088	399	224	15	19	410	151	521	3.88e-50	177
MS.gene74009.t1	AT1G66350	32.234	394	219	15	22	404	149	505	3.29e-46	166
MS.gene74009.t1	AT2G01570	32.997	397	228	16	17	404	213	580	2.80e-45	165
MS.gene74009.t1	AT1G14920	31.566	396	235	14	17	404	161	528	3.30e-44	161
MS.gene74009.t1	AT5G48150	31.070	383	241	10	29	404	123	489	1.29e-42	156
MS.gene74009.t1	AT5G48150	31.070	383	241	10	29	404	123	489	1.29e-42	156

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Find 137 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAACGGTTGTCCAA+CGG	0.621563	5.3:+46659805	None:intergenic
AAAGCTCGTGACATTAGTCG+AGG	0.678929	5.3:-46659618	MS.gene74009:CDS
AAAGGAGTTAACATAAGCTA+TGG	0.536826	5.3:-46659350	MS.gene74009:CDS
AAATGAGCAAACTTGACGTA+AGG	0.579384	5.3:+46660079	None:intergenic
AAATTCCACGACGGAGGAGG+AGG	0.545632	5.3:-46660395	MS.gene74009:CDS
AAGCAATAGAATCTGAAGCC+CGG	0.574832	5.3:+46659672	None:intergenic
AAGCTGTTACTCATGAAAGA+AGG	0.464529	5.3:-46660033	MS.gene74009:CDS
AATGCAGTGATGCGAAGATG+TGG	0.609707	5.3:+46659920	None:intergenic
ACAAAGCCTGCATCAGTGAT+GGG	0.550334	5.3:+46659584	None:intergenic
ACAACCTTTGCTGCTTCCGT+TGG	0.496161	5.3:-46659821	MS.gene74009:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAGTTAACATAAGCTA+TGG	-	chr5.3:46660258-46660277	MS.gene74009:CDS	30.0%
ATAACAACTTTGCTTGACAA+TGG	+	chr5.3:46660287-46660306	None:intergenic	30.0%
CTACATTGATGAAAAGTGAA+CGG	+	chr5.3:46659817-46659836	None:intergenic	30.0%
GTTTATTTAACGATGGGTAT+AGG	-	chr5.3:46660310-46660329	MS.gene74009:CDS	30.0%
TCTATTGCTTCATTCTTGAA+CGG	-	chr5.3:46659949-46659968	MS.gene74009:CDS	30.0%
TGGGTTTCCTATGAATAAAT+GGG	-	chr5.3:46660104-46660123	MS.gene74009:CDS	30.0%
TTGTCAAGCAAAGTTGTTAT+TGG	-	chr5.3:46660287-46660306	MS.gene74009:CDS	30.0%
AAATGAGCAAACTTGACGTA+AGG	+	chr5.3:46659532-46659551	None:intergenic	35.0%
AAGCTGTTACTCATGAAAGA+AGG	-	chr5.3:46659575-46659594	MS.gene74009:CDS	35.0%
AGAGTTGGGTAACAATAAGT+TGG	-	chr5.3:46660338-46660357	MS.gene74009:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	46659193	46660437	46659193	ID=MS.gene74009
chr5.3	mRNA	46659193	46660437	46659193	ID=MS.gene74009.t1;Parent=MS.gene74009
chr5.3	exon	46659193	46660437	46659193	ID=MS.gene74009.t1.exon1;Parent=MS.gene74009.t1
chr5.3	CDS	46659193	46660437	46659193	ID=cds.MS.gene74009.t1;Parent=MS.gene74009.t1

Gene Sequence

>MS.gene74009

ATGGGAGACATGTCCAACTCAAATTCCACGACGGAGGAGGAGGAGGAGGAGGATGACAGAAAGGGCCTCCGTCTAGTGCACCTCCTTATGGCGGCAGCGGAGGCCCTAACAGGCACAAACAAGAGTCACCATCTGGCTCAAGTGATATTGATTCGGCTCAAGGACTTAGTGTCCTCCACTCACGGCACCAACATGGAGAGACTCGCTGCGTATTTTACCGACGCCCTCCAAACTCTGCTAAACGGAACCGATTGTGGTCACCACAAACTCTGTCTTCTCACTGGACCCCACCAAACAGACATACTCTCAGCCTTTCAGCTTCTTCAAGACATGTCTCCTTACGTCAAGTTTGCTCATTTCACGGCAAACCAAGCTATCCTTGAAGCTGTTACTCATGAAAGAAGGGTTCACATAGTGGACTTTGATATCATGGAAGGGGCCCAATGGGCTTCACTCATTCAATCACTTTCATCGCGAAAAGAAGGCCTGCCGGGCCCACATCTTCGCATCACTGCATTGTCTAGAAACAAAGAACGTGGCAATGGACGATCTAGATCGTCCTTTGCCACTGTTCAGGAAACTGGAAGAAGGTTAACAACCTTTGCTGCTTCCGTTGGACAACCGTTCACTTTTCATCAATGTAGGTTGGACTCAGACGAAACGTTTCGAACCTCTTCATTAAAGCTTGTTCGTGGCGAGGCTTTAGTTTTTAACTGTGTCATGCATTTGCCACATCTTAGTTACCGGGCTTCAGATTCTATTGCTTCATTCTTGAACGGTGCCAAGGAGTTAGGAACAAAGCTCGTGACATTAGTCGAGGAGGAAGTAGGGCCCATCACTGATGCAGGCTTTGTGGGTTTGTTCATGGATTCATTGCATCGTTATTCAGCGATGTATGACTCGTTCGAGGCTGGGTTTCCTATGAATAAATGGGCTAGGAGTTTAGTGGAGCAAGTATTTTTAGGCCCACGAATAATGGGCTCAGTGGCCGAGTTGTACATGACTGGTGAAGAGGAGGAGCAAGAGAGGAGTTCTTGGGGGGAGTGGTTGGGTGTGGAAGGGTTCAAAGGAGTTAACATAAGCTATGGTAACCATTGTCAAGCAAAGTTGTTATTGGGTTTATTTAACGATGGGTATAGGGTGGAAGAGTTGGGTAACAATAAGTTGGTGTTAGGTTGGAAATCAAGACGTTTGCTTTCTGCTTCTGTTTGGACTTGTTTGTCAGAGATTGAATATGATTTTTAA

Protein sequence

>MS.gene74009.t1

MGDMSNSNSTTEEEEEEDDRKGLRLVHLLMAAAEALTGTNKSHHLAQVILIRLKDLVSSTHGTNMERLAAYFTDALQTLLNGTDCGHHKLCLLTGPHQTDILSAFQLLQDMSPYVKFAHFTANQAILEAVTHERRVHIVDFDIMEGAQWASLIQSLSSRKEGLPGPHLRITALSRNKERGNGRSRSSFATVQETGRRLTTFAASVGQPFTFHQCRLDSDETFRTSSLKLVRGEALVFNCVMHLPHLSYRASDSIASFLNGAKELGTKLVTLVEEEVGPITDAGFVGLFMDSLHRYSAMYDSFEAGFPMNKWARSLVEQVFLGPRIMGSVAELYMTGEEEEQERSSWGEWLGVEGFKGVNISYGNHCQAKLLLGLFNDGYRVEELGNNKLVLGWKSRRLLSASVWTCLSEIEYDF