AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74079

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74079.t1 MTR_7g024670 89.244 344 27 4 1 343 39 373 0.0 558
MS.gene74079.t1 MTR_4g022370 39.103 312 153 9 10 316 55 334 5.60e-51 173
MS.gene74079.t1 MTR_4g063780 39.689 257 101 10 17 260 55 270 2.61e-40 144
MS.gene74079.t1 MTR_2g096740 40.909 242 72 9 17 243 26 211 2.44e-38 138
MS.gene74079.t1 MTR_2g096740 40.909 242 72 9 17 243 41 226 2.76e-38 138
MS.gene74079.t1 MTR_7g059400 35.276 326 156 11 14 331 53 331 2.86e-36 134
MS.gene74079.t1 MTR_8g479350 74.603 63 16 0 40 102 69 131 1.82e-30 119
MS.gene74079.t1 MTR_8g068210 51.429 105 37 2 13 113 16 110 2.98e-30 118
MS.gene74079.t1 MTR_3g091820 57.609 92 34 1 2 93 11 97 2.51e-29 114
MS.gene74079.t1 MTR_8g015840 66.667 75 24 1 21 94 1 75 3.33e-29 112
MS.gene74079.t1 MTR_2g014060 73.134 67 17 1 24 90 11 76 4.86e-29 114
MS.gene74079.t1 MTR_8g079060 75.410 61 15 0 41 101 31 91 5.52e-29 112
MS.gene74079.t1 MTR_5g031440 88.000 50 6 0 40 89 44 93 1.16e-28 113
MS.gene74079.t1 MTR_4g109980 86.538 52 7 0 38 89 39 90 1.44e-28 113
MS.gene74079.t1 MTR_3g077750 57.955 88 32 2 2 89 29 111 1.98e-28 113
MS.gene74079.t1 MTR_3g090430 47.934 121 47 3 38 158 50 154 2.16e-28 112
MS.gene74079.t1 MTR_4g461080 83.333 54 9 0 38 91 28 81 3.32e-28 111
MS.gene74079.t1 MTR_1g077600 60.274 73 29 0 23 95 27 99 1.77e-27 108
MS.gene74079.t1 MTR_1g077600 60.274 73 29 0 23 95 27 99 1.90e-27 109
MS.gene74079.t1 MTR_8g027295 83.019 53 9 0 41 93 26 78 3.90e-27 108
MS.gene74079.t1 MTR_2g093220 78.571 56 12 0 38 93 39 94 4.21e-27 108
MS.gene74079.t1 MTR_2g059540 88.000 50 6 0 38 87 30 79 7.16e-27 105
MS.gene74079.t1 MTR_2g014170 86.000 50 7 0 38 87 44 93 1.40e-26 107
MS.gene74079.t1 MTR_1g056810 77.586 58 10 1 41 98 14 68 1.49e-26 107
MS.gene74079.t1 MTR_2g013370 58.333 84 30 2 13 96 23 101 4.92e-26 105
MS.gene74079.t1 MTR_4g089095 78.571 56 10 1 41 96 52 105 1.53e-25 104
MS.gene74079.t1 MTR_4g089095 78.571 56 10 1 41 96 18 71 2.00e-25 103
MS.gene74079.t1 MTR_6g012450 76.471 51 12 0 41 91 138 188 1.19e-23 101
MS.gene74079.t1 MTR_2g016030 76.000 50 12 0 41 90 49 98 1.61e-23 95.5
MS.gene74079.t1 MTR_4g082060 46.429 112 45 3 41 148 124 224 3.77e-23 100
MS.gene74079.t1 MTR_7g010950 74.510 51 13 0 41 91 137 187 7.31e-23 99.4
MS.gene74079.t1 MTR_8g044220 69.811 53 16 0 41 93 120 172 1.05e-22 98.6
MS.gene74079.t1 MTR_3g435480 53.659 82 27 2 41 122 138 208 1.20e-22 98.6
MS.gene74079.t1 MTR_6g027450 57.534 73 27 1 19 91 73 141 3.86e-22 95.5
MS.gene74079.t1 MTR_5g041420 41.176 119 62 1 41 159 140 250 4.03e-22 95.5
MS.gene74079.t1 MTR_7g086780 70.370 54 15 1 40 93 100 152 9.32e-22 95.9
MS.gene74079.t1 MTR_5g041530 68.966 58 17 1 41 98 142 198 1.51e-21 94.7
MS.gene74079.t1 MTR_5g041400 39.669 121 61 3 41 159 121 231 1.52e-21 94.4
MS.gene74079.t1 MTR_5g041380 37.267 161 82 6 2 159 95 239 2.94e-21 94.0
MS.gene74079.t1 MTR_6g027460 67.308 52 17 0 40 91 97 148 3.30e-21 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74079.t1 AT3G55370 36.482 307 127 14 5 294 46 301 5.52e-35 131
MS.gene74079.t1 AT2G37590 72.152 79 20 1 17 95 69 145 6.18e-35 130
MS.gene74079.t1 AT1G07640 70.732 82 22 1 15 96 55 134 2.53e-34 129
MS.gene74079.t1 AT1G07640 72.727 77 19 1 20 96 4 78 3.15e-34 127
MS.gene74079.t1 AT1G07640 70.732 82 22 1 15 96 63 142 3.58e-34 128
MS.gene74079.t1 AT3G55370 39.331 239 97 9 5 243 46 236 4.73e-34 128
MS.gene74079.t1 AT3G55370 39.331 239 97 9 5 243 91 281 7.91e-34 128
MS.gene74079.t1 AT5G02460 70.130 77 21 1 17 93 75 149 9.58e-33 126
MS.gene74079.t1 AT2G28810 75.000 68 16 1 23 90 62 128 1.78e-31 121
MS.gene74079.t1 AT2G28810 75.000 68 16 1 23 90 79 145 2.17e-31 121
MS.gene74079.t1 AT1G51700 85.455 55 8 0 40 94 34 88 7.50e-31 115
MS.gene74079.t1 AT1G21340 56.322 87 37 1 11 96 9 95 3.02e-30 116
MS.gene74079.t1 AT5G65590 81.667 60 11 0 40 99 42 101 3.40e-30 117
MS.gene74079.t1 AT5G60850 64.835 91 24 4 29 112 38 127 4.17e-30 117
MS.gene74079.t1 AT5G60200 57.831 83 33 1 38 118 54 136 7.96e-30 115
MS.gene74079.t1 AT2G28510 83.929 56 9 0 38 93 47 102 1.09e-29 115
MS.gene74079.t1 AT3G21270 83.929 56 9 0 40 95 30 85 1.38e-29 112
MS.gene74079.t1 AT4G38000 71.212 66 19 0 40 105 42 107 2.35e-28 110
MS.gene74079.t1 AT5G62940 88.235 51 6 0 39 89 73 123 2.36e-28 113
MS.gene74079.t1 AT5G66940 53.535 99 37 1 41 130 34 132 2.44e-28 110
MS.gene74079.t1 AT3G45610 45.370 108 51 1 1 108 10 109 3.33e-28 110
MS.gene74079.t1 AT3G50410 76.786 56 13 0 41 96 32 87 2.37e-27 108
MS.gene74079.t1 AT1G28310 75.439 57 14 0 40 96 28 84 3.01e-27 109
MS.gene74079.t1 AT1G28310 75.439 57 14 0 40 96 52 108 3.87e-27 109
MS.gene74079.t1 AT3G52440 68.852 61 19 0 35 95 21 81 1.51e-26 105
MS.gene74079.t1 AT3G52440 68.852 61 19 0 35 95 40 100 2.33e-26 105
MS.gene74079.t1 AT4G00940 60.274 73 29 0 21 93 50 122 5.50e-26 105
MS.gene74079.t1 AT4G00940 60.274 73 29 0 21 93 50 122 5.50e-26 105
MS.gene74079.t1 AT4G00940 60.274 73 29 0 21 93 50 122 5.50e-26 105
MS.gene74079.t1 AT4G21050 61.644 73 27 1 38 110 23 94 2.60e-25 101
MS.gene74079.t1 AT3G61850 77.358 53 12 0 41 93 64 116 3.22e-25 103
MS.gene74079.t1 AT3G61850 77.358 53 12 0 41 93 64 116 3.22e-25 103
MS.gene74079.t1 AT4G24060 75.000 56 14 0 38 93 52 107 3.55e-25 104
MS.gene74079.t1 AT3G61850 77.358 53 12 0 41 93 76 128 3.58e-25 103
MS.gene74079.t1 AT3G61850 77.358 53 12 0 41 93 64 116 4.35e-25 103
MS.gene74079.t1 AT3G61850 77.358 53 12 0 41 93 76 128 4.93e-25 103
MS.gene74079.t1 AT1G47655 75.000 52 13 0 36 87 26 77 1.53e-23 97.1
MS.gene74079.t1 AT5G62430 37.226 137 83 2 20 154 36 171 2.46e-23 98.6
MS.gene74079.t1 AT2G46590 84.783 46 7 0 41 86 70 115 2.77e-23 99.4
MS.gene74079.t1 AT2G46590 84.783 46 7 0 41 86 82 127 3.14e-23 99.4
MS.gene74079.t1 AT3G47500 74.510 51 13 0 41 91 112 162 3.74e-23 100
MS.gene74079.t1 AT1G29160 75.472 53 12 1 41 93 64 115 4.66e-23 94.7
MS.gene74079.t1 AT2G34140 75.472 53 12 1 41 93 60 111 5.26e-23 94.4
MS.gene74079.t1 AT1G64620 76.471 51 12 0 38 88 48 98 5.91e-23 98.2
MS.gene74079.t1 AT1G69570 60.000 75 18 2 41 115 134 196 7.92e-23 98.6
MS.gene74079.t1 AT5G39660 74.510 51 13 0 41 91 140 190 3.72e-22 97.4
MS.gene74079.t1 AT5G39660 74.510 51 13 0 41 91 140 190 3.72e-22 97.4
MS.gene74079.t1 AT5G39660 74.510 51 13 0 41 91 140 190 3.72e-22 97.4
MS.gene74079.t1 AT4G21040 64.516 62 22 0 41 102 27 88 6.73e-22 93.2
MS.gene74079.t1 AT1G26790 54.286 70 30 1 22 91 96 163 9.47e-22 95.1
MS.gene74079.t1 AT4G21080 62.903 62 23 0 41 102 27 88 4.35e-21 91.3
MS.gene74079.t1 AT4G21030 57.692 52 22 0 41 92 23 74 2.51e-14 71.2

Find 73 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAACTTGTCGTCGTTAT+TGG 0.174969 7.4:+76702286 MS.gene74079:CDS
GAAATAGTAATGATCTATTT+TGG 0.191335 7.4:+76703012 MS.gene74079:CDS
CAAATTGGATTATTTCAATT+TGG 0.211059 7.4:+76702828 MS.gene74079:CDS
AGTAATTTGCAACCACAAAT+TGG 0.232158 7.4:+76702813 MS.gene74079:CDS
GCAAATTCTTCTTCTAATAA+TGG 0.245095 7.4:+76702486 MS.gene74079:CDS
GTGCTGCTGCAGCATCATTT+TGG 0.253706 7.4:-76702182 None:intergenic
CAAGGTGGTGAAGTGAAATT+AGG 0.320582 7.4:-76703083 None:intergenic
TGAGGGCATTGGTTCTTTGT+TGG 0.348674 7.4:+76702608 MS.gene74079:CDS
CAATTTGGTGGAGAAAATAA+TGG 0.350809 7.4:+76702843 MS.gene74079:CDS
GTCGGTGCTGGTGCTGGTGC+TGG 0.357439 7.4:+76702432 MS.gene74079:CDS
CTCCAGGTCGGTGCTGGTGC+TGG 0.360077 7.4:+76702426 MS.gene74079:CDS
TGATGAACTTGTAGCGAATT+CGG 0.372887 7.4:-76702762 None:intergenic
AGCCGCAAAGAAATTTATTT+CGG 0.382611 7.4:+76702868 MS.gene74079:CDS
GACCGAAATAAATTTCTTTG+CGG 0.387520 7.4:-76702870 None:intergenic
AATTGAAATAATCCAATTTG+TGG 0.391831 7.4:-76702825 None:intergenic
CTGTTGGAGGTGGTTGTAGA+AGG 0.393447 7.4:+76702337 MS.gene74079:CDS
TCTTCAATTGGTAATGGTAA+TGG 0.395518 7.4:+76702693 MS.gene74079:CDS
GGTAGTGGTTCTTCTTCAAT+TGG 0.396092 7.4:+76702681 MS.gene74079:CDS
CATTGTTCACCAATGCCATT+TGG 0.402281 7.4:-76702732 None:intergenic
GCTGGTGCTGGTGTTGCTGC+TGG 0.404302 7.4:+76702444 MS.gene74079:CDS
AGGAACAATAAAAGAAGAAA+AGG 0.418330 7.4:+76702357 MS.gene74079:CDS
GTGTTTGTTGATTCACATCT+TGG 0.421696 7.4:-76702213 None:intergenic
TAAAAGAAGAAAAGGAAATT+CGG 0.424897 7.4:+76702365 MS.gene74079:CDS
GGTTCTTCTTCAATTGGTAA+TGG 0.429389 7.4:+76702687 MS.gene74079:CDS
ATTGGATTATTTCAATTTGG+TGG 0.443223 7.4:+76702831 MS.gene74079:CDS
TATTCTTCAAGTGTTAGTAT+TGG 0.447776 7.4:+76702903 MS.gene74079:CDS
TCAAGTTAATACAGTTAAAG+TGG 0.456282 7.4:+76702935 MS.gene74079:CDS
AAGAAATTTATTTCGGTCGA+AGG 0.460255 7.4:+76702875 MS.gene74079:CDS
GGTTGCAAATTACTCAAGAA+AGG 0.462145 7.4:-76702804 None:intergenic
CACCAGCACCAGCACCGACC+TGG 0.469378 7.4:-76702428 None:intergenic
CTTCTACAACCACCTCCAAC+AGG 0.475660 7.4:-76702336 None:intergenic
CGAAACGTTCCTGTTGGAGG+TGG 0.475928 7.4:+76702327 MS.gene74079:CDS
GATCATCTCCAGGTCGGTGC+TGG 0.479318 7.4:+76702420 MS.gene74079:CDS
AACCAAAAGCACTAGATTTG+AGG 0.489555 7.4:-76703110 None:intergenic
CGATGTAAAGAGGTTATGAA+TGG 0.495818 7.4:-76702561 None:intergenic
CTTCGAAACGTTCCTGTTGG+AGG 0.496892 7.4:+76702324 MS.gene74079:CDS
AATGGAAATGGAAGTGGAAA+TGG 0.500010 7.4:+76703035 MS.gene74079:CDS
GGAAATTGTGTTGGAAAATG+AGG 0.501929 7.4:-76702540 None:intergenic
GTTGAGTTTCAACTTGGTAG+TGG 0.507591 7.4:+76702666 MS.gene74079:CDS
GTCGTTATGACGATGTAAAG+AGG 0.514424 7.4:-76702571 None:intergenic
GTTGCAAATTACTCAAGAAA+GGG 0.514735 7.4:-76702803 None:intergenic
GGCTCTTTGTTGATACCAAA+TGG 0.520108 7.4:+76702717 MS.gene74079:CDS
ATACCGGTCTTCTAGACCCT+TGG 0.520730 7.4:-76702125 None:intergenic
GTTATGAATGGAAATTGTGT+TGG 0.523635 7.4:-76702549 None:intergenic
GGTGCTGGTGTTGCTGCTGG+TGG 0.526532 7.4:+76702447 MS.gene74079:CDS
TACTCATAATGATCATCTCC+AGG 0.528088 7.4:+76702410 MS.gene74079:CDS
GAAGCTGATGGCAGCTACCA+AGG 0.530104 7.4:+76702108 MS.gene74079:CDS
GCACTTCGAAACGTTCCTGT+TGG 0.543248 7.4:+76702321 MS.gene74079:CDS
ACTTTAACTGTATTAACTTG+AGG 0.543542 7.4:-76702933 None:intergenic
CGACAATAGTTACGTTTCTG+AGG 0.546631 7.4:+76702590 MS.gene74079:CDS
ACTAATTCTAATGTGAATGT+TGG 0.552195 7.4:+76702513 MS.gene74079:CDS
AGTTACGTTTCTGAGGGCAT+TGG 0.553637 7.4:+76702597 MS.gene74079:CDS
CACTAGATTTGAGGATCACA+AGG 0.554201 7.4:-76703101 None:intergenic
CTACCAAGGGTCTAGAAGAC+CGG 0.558504 7.4:+76702122 MS.gene74079:CDS
GACAATAGTTACGTTTCTGA+GGG 0.559200 7.4:+76702591 MS.gene74079:CDS
GTGGAAGAAAACAATCATCA+AGG 0.560168 7.4:+76702954 MS.gene74079:CDS
TCATTATGAGTAGGTTTCAA+AGG 0.560847 7.4:-76702399 None:intergenic
CTTTGACATCTTAGCTCGAT+CGG 0.562486 7.4:-76702154 None:intergenic
GCTCGATCGGTCATTGATAC+CGG 0.568457 7.4:-76702141 None:intergenic
GTAGCTGCCATCAGCTTCAA+CGG 0.578179 7.4:-76702103 None:intergenic
TCAATTGGTAATGGTAATGG+TGG 0.579040 7.4:+76702696 MS.gene74079:CDS
CGTCGTTATTGGACTAGAGG+TGG 0.585783 7.4:+76702297 MS.gene74079:CDS
ACTAATGTTGAGTTTCAACT+TGG 0.586983 7.4:+76702660 MS.gene74079:CDS
TCTGTCACCGTTGAAGCTGA+TGG 0.588932 7.4:+76702096 MS.gene74079:CDS
TGGAGATGATCATTATGAGT+AGG 0.590535 7.4:-76702408 None:intergenic
AAGCTGATGGCAGCTACCAA+GGG 0.593247 7.4:+76702109 MS.gene74079:CDS
CAAATGGCATTGGTGAACAA+TGG 0.594140 7.4:+76702733 MS.gene74079:CDS
TGTCGTCGTTATTGGACTAG+AGG 0.602398 7.4:+76702294 MS.gene74079:CDS
ATGGCATTGGTGAACAATGG+AGG 0.607659 7.4:+76702736 MS.gene74079:CDS
GAAATGGTAATGAAAATGCA+TGG 0.613061 7.4:+76703051 MS.gene74079:CDS
TTGTTGATACCAAATGGCAT+TGG 0.626903 7.4:+76702723 MS.gene74079:CDS
CATAATGATCATCTCCAGGT+CGG 0.654251 7.4:+76702414 MS.gene74079:CDS
TAGATTTGAGGATCACAAGG+TGG 0.736101 7.4:-76703098 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGAAATAATCCAATTTG+TGG - chr7.4:76702828-76702847 None:intergenic 20.0%
!! CAAATTGGATTATTTCAATT+TGG + chr7.4:76702828-76702847 MS.gene74079:CDS 20.0%
!! TAAAAGAAGAAAAGGAAATT+CGG + chr7.4:76702365-76702384 MS.gene74079:CDS 20.0%
!!! GAAATAGTAATGATCTATTT+TGG + chr7.4:76703012-76703031 MS.gene74079:CDS 20.0%
! ACTAATTCTAATGTGAATGT+TGG + chr7.4:76702513-76702532 MS.gene74079:CDS 25.0%
! AGGAACAATAAAAGAAGAAA+AGG + chr7.4:76702357-76702376 MS.gene74079:CDS 25.0%
! ATTGGATTATTTCAATTTGG+TGG + chr7.4:76702831-76702850 MS.gene74079:CDS 25.0%
! GCAAATTCTTCTTCTAATAA+TGG + chr7.4:76702486-76702505 MS.gene74079:CDS 25.0%
! TATTCTTCAAGTGTTAGTAT+TGG + chr7.4:76702903-76702922 MS.gene74079:CDS 25.0%
! TCAAGTTAATACAGTTAAAG+TGG + chr7.4:76702935-76702954 MS.gene74079:CDS 25.0%
!! ACTTTAACTGTATTAACTTG+AGG - chr7.4:76702936-76702955 None:intergenic 25.0%
!! AGTACTATTGCTCATATTTT+TGG - chr7.4:76702634-76702653 None:intergenic 25.0%
!!! AGTAATGATCTATTTTGGAA+TGG + chr7.4:76703017-76703036 MS.gene74079:CDS 25.0%
AAAAATCTCTTGAATGGTTC+AGG + chr7.4:76702990-76703009 MS.gene74079:CDS 30.0%
AAGAAATTTATTTCGGTCGA+AGG + chr7.4:76702875-76702894 MS.gene74079:CDS 30.0%
ACTAATGTTGAGTTTCAACT+TGG + chr7.4:76702660-76702679 MS.gene74079:CDS 30.0%
AGCCGCAAAGAAATTTATTT+CGG + chr7.4:76702868-76702887 MS.gene74079:CDS 30.0%
GACCGAAATAAATTTCTTTG+CGG - chr7.4:76702873-76702892 None:intergenic 30.0%
GTTATGAATGGAAATTGTGT+TGG - chr7.4:76702552-76702571 None:intergenic 30.0%
GTTGCAAATTACTCAAGAAA+GGG - chr7.4:76702806-76702825 None:intergenic 30.0%
TCATTATGAGTAGGTTTCAA+AGG - chr7.4:76702402-76702421 None:intergenic 30.0%
TTGCCAAAAAATCTCTTGAA+TGG + chr7.4:76702984-76703003 MS.gene74079:CDS 30.0%
! AGTAATTTGCAACCACAAAT+TGG + chr7.4:76702813-76702832 MS.gene74079:CDS 30.0%
! CAATTTGGTGGAGAAAATAA+TGG + chr7.4:76702843-76702862 MS.gene74079:CDS 30.0%
! GAAATGGTAATGAAAATGCA+TGG + chr7.4:76703051-76703070 MS.gene74079:CDS 30.0%
!! TCTTCAATTGGTAATGGTAA+TGG + chr7.4:76702693-76702712 MS.gene74079:CDS 30.0%
!!! GAACCATTCAAGAGATTTTT+TGG - chr7.4:76702990-76703009 None:intergenic 30.0%
!!! GATCTATTTTGGAATGGAAA+TGG + chr7.4:76703023-76703042 MS.gene74079:CDS 30.0%
AATGGAAATGGAAGTGGAAA+TGG + chr7.4:76703035-76703054 MS.gene74079:CDS 35.0%
CGATGTAAAGAGGTTATGAA+TGG - chr7.4:76702564-76702583 None:intergenic 35.0%
GACAATAGTTACGTTTCTGA+GGG + chr7.4:76702591-76702610 MS.gene74079:CDS 35.0%
GGAAATTGTGTTGGAAAATG+AGG - chr7.4:76702543-76702562 None:intergenic 35.0%
GGTTCTTCTTCAATTGGTAA+TGG + chr7.4:76702687-76702706 MS.gene74079:CDS 35.0%
GGTTGCAAATTACTCAAGAA+AGG - chr7.4:76702807-76702826 None:intergenic 35.0%
GTGGAAGAAAACAATCATCA+AGG + chr7.4:76702954-76702973 MS.gene74079:CDS 35.0%
TACTCATAATGATCATCTCC+AGG + chr7.4:76702410-76702429 MS.gene74079:CDS 35.0%
TGATGAACTTGTAGCGAATT+CGG - chr7.4:76702765-76702784 None:intergenic 35.0%
TGGAGATGATCATTATGAGT+AGG - chr7.4:76702411-76702430 None:intergenic 35.0%
TTGTTGATACCAAATGGCAT+TGG + chr7.4:76702723-76702742 MS.gene74079:CDS 35.0%
! GACGACAAGTTTTGCAAAAA+TGG - chr7.4:76702281-76702300 None:intergenic 35.0%
!! GTGTTTGTTGATTCACATCT+TGG - chr7.4:76702216-76702235 None:intergenic 35.0%
!! TCAATTGGTAATGGTAATGG+TGG + chr7.4:76702696-76702715 MS.gene74079:CDS 35.0%
!!! TTTTGGAATGGAAATGGAAG+TGG + chr7.4:76703029-76703048 MS.gene74079:CDS 35.0%
CAAGGTGGTGAAGTGAAATT+AGG - chr7.4:76703086-76703105 None:intergenic 40.0%
CATAATGATCATCTCCAGGT+CGG + chr7.4:76702414-76702433 MS.gene74079:CDS 40.0%
CATTGTTCACCAATGCCATT+TGG - chr7.4:76702735-76702754 None:intergenic 40.0%
CGACAATAGTTACGTTTCTG+AGG + chr7.4:76702590-76702609 MS.gene74079:CDS 40.0%
CTTTGACATCTTAGCTCGAT+CGG - chr7.4:76702157-76702176 None:intergenic 40.0%
GCAAAACTTGTCGTCGTTAT+TGG + chr7.4:76702286-76702305 MS.gene74079:CDS 40.0%
GGCTCTTTGTTGATACCAAA+TGG + chr7.4:76702717-76702736 MS.gene74079:CDS 40.0%
GTCGTTATGACGATGTAAAG+AGG - chr7.4:76702574-76702593 None:intergenic 40.0%
GTTGAGTTTCAACTTGGTAG+TGG + chr7.4:76702666-76702685 MS.gene74079:CDS 40.0%
TAGATTTGAGGATCACAAGG+TGG - chr7.4:76703101-76703120 None:intergenic 40.0%
! CAAGTTTTGCAAAAATGGCG+TGG - chr7.4:76702276-76702295 None:intergenic 40.0%
! GGTAGTGGTTCTTCTTCAAT+TGG + chr7.4:76702681-76702700 MS.gene74079:CDS 40.0%
!! CAAATGGCATTGGTGAACAA+TGG + chr7.4:76702733-76702752 MS.gene74079:CDS 40.0%
! AGTTACGTTTCTGAGGGCAT+TGG + chr7.4:76702597-76702616 MS.gene74079:CDS 45.0%
! TGTCGTCGTTATTGGACTAG+AGG + chr7.4:76702294-76702313 MS.gene74079:CDS 45.0%
!! ATGGCATTGGTGAACAATGG+AGG + chr7.4:76702736-76702755 MS.gene74079:CDS 45.0%
!! TGAGGGCATTGGTTCTTTGT+TGG + chr7.4:76702608-76702627 MS.gene74079:CDS 45.0%
AAGCTGATGGCAGCTACCAA+GGG + chr7.4:76702109-76702128 MS.gene74079:CDS 50.0%
ATACCGGTCTTCTAGACCCT+TGG - chr7.4:76702128-76702147 None:intergenic 50.0%
CTACCAAGGGTCTAGAAGAC+CGG + chr7.4:76702122-76702141 MS.gene74079:CDS 50.0%
CTGTTGGAGGTGGTTGTAGA+AGG + chr7.4:76702337-76702356 MS.gene74079:CDS 50.0%
CTTCGAAACGTTCCTGTTGG+AGG + chr7.4:76702324-76702343 MS.gene74079:CDS 50.0%
CTTCTACAACCACCTCCAAC+AGG - chr7.4:76702339-76702358 None:intergenic 50.0%
GCACTTCGAAACGTTCCTGT+TGG + chr7.4:76702321-76702340 MS.gene74079:CDS 50.0%
GCTCGATCGGTCATTGATAC+CGG - chr7.4:76702144-76702163 None:intergenic 50.0%
GTAGCTGCCATCAGCTTCAA+CGG - chr7.4:76702106-76702125 None:intergenic 50.0%
TCTGTCACCGTTGAAGCTGA+TGG + chr7.4:76702096-76702115 MS.gene74079:CDS 50.0%
! CGTCGTTATTGGACTAGAGG+TGG + chr7.4:76702297-76702316 MS.gene74079:CDS 50.0%
!! GTGCTGCTGCAGCATCATTT+TGG - chr7.4:76702185-76702204 None:intergenic 50.0%
CGAAACGTTCCTGTTGGAGG+TGG + chr7.4:76702327-76702346 MS.gene74079:CDS 55.0%
GAAGCTGATGGCAGCTACCA+AGG + chr7.4:76702108-76702127 MS.gene74079:CDS 55.0%
GATCATCTCCAGGTCGGTGC+TGG + chr7.4:76702420-76702439 MS.gene74079:CDS 60.0%
!! GCTGGTGCTGGTGTTGCTGC+TGG + chr7.4:76702444-76702463 MS.gene74079:CDS 65.0%
!! GGTGCTGGTGTTGCTGCTGG+TGG + chr7.4:76702447-76702466 MS.gene74079:CDS 65.0%
!! CACCAGCACCAGCACCGACC+TGG - chr7.4:76702431-76702450 None:intergenic 70.0%
!! CTCCAGGTCGGTGCTGGTGC+TGG + chr7.4:76702426-76702445 MS.gene74079:CDS 70.0%
!! GTCGGTGCTGGTGCTGGTGC+TGG + chr7.4:76702432-76702451 MS.gene74079:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 76702090 76703121 76702090 ID=MS.gene74079
chr7.4 mRNA 76702090 76703121 76702090 ID=MS.gene74079.t1;Parent=MS.gene74079
chr7.4 exon 76702090 76703121 76702090 ID=MS.gene74079.t1.exon1;Parent=MS.gene74079.t1
chr7.4 CDS 76702090 76703121 76702090 ID=cds.MS.gene74079.t1;Parent=MS.gene74079.t1
Gene Sequence

>MS.gene74079

ATGATGTCTGTCACCGTTGAAGCTGATGGCAGCTACCAAGGGTCTAGAAGACCGGTATCAATGACCGATCGAGCTAAGATGTCAAAGATACACCAAAATGATGCTGCAGCAGCACAGAAATGTCCAAGATGTGAATCAACAAACACAAAGTTCTGCTACTACAACAACTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGTGGTGCACTTCGAAACGTTCCTGTTGGAGGTGGTTGTAGAAGGAACAATAAAAGAAGAAAAGGAAATTCGGTATCAAAATCACCTTTGAAACCTACTCATAATGATCATCTCCAGGTCGGTGCTGGTGCTGGTGCTGGTGTTGCTGCTGGTGGTTCTAGCTCAGCAAGTGCAAATTCTTCTTCTAATAATGGTTGCACTAATTCTAATGTGAATGTTGGAATGCCTCATTTTCCAACACAATTTCCATTCATAACCTCTTTACATCGTCATAACGACAATAGTTACGTTTCTGAGGGCATTGGTTCTTTGTTGGCCAAAAATATGAGCAATAGTACTACTACTACTAATGTTGAGTTTCAACTTGGTAGTGGTTCTTCTTCAATTGGTAATGGTAATGGTGGCTCTTTGTTGATACCAAATGGCATTGGTGAACAATGGAGGTTTCCGAATTCGCTACAAGTTCATCAACAACAATATCAACAATTCCCTTTCTTGAGTAATTTGCAACCACAAATTGGATTATTTCAATTTGGTGGAGAAAATAATGGAGAGCCGCAAAGAAATTTATTTCGGTCGAAGGAAACATATTCTTCAAGTGTTAGTATTGGAATGATGCCTCAAGTTAATACAGTTAAAGTGGAAGAAAACAATCATCAAGGTTTGAGTTTGCCAAAAAATCTCTTGAATGGTTCAGGAAATAGTAATGATCTATTTTGGAATGGAAATGGAAGTGGAAATGGTAATGAAAATGCATGGAATGAAGTTCCTAATTTCACTTCACCACCTTGTGATCCTCAAATCTAG
Protein sequence

>MS.gene74079.t1

MMSVTVEADGSYQGSRRPVSMTDRAKMSKIHQNDAAAAQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRRKGNSVSKSPLKPTHNDHLQVGAGAGAGVAAGGSSSASANSSSNNGCTNSNVNVGMPHFPTQFPFITSLHRHNDNSYVSEGIGSLLAKNMSNSTTTTNVEFQLGSGSSSIGNGNGGSLLIPNGIGEQWRFPNSLQVHQQQYQQFPFLSNLQPQIGLFQFGGENNGEPQRNLFRSKETYSSSVSIGMMPQVNTVKVEENNHQGLSLPKNLLNGSGNSNDLFWNGNGSGNGNENAWNEVPNFTSPPCDPQI