Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74105.t1 | ABN09121.1 | 92.1 | 404 | 28 | 1 | 1 | 400 | 1 | 404 | 4.20E-163 | 584.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74105.t1 | Q6X7J4 | 41.4 | 420 | 183 | 6 | 1 | 400 | 1 | 377 | 4.2e-34 | 147.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74105.t1 | U5LKY5 | 92.1 | 404 | 28 | 1 | 1 | 400 | 1 | 404 | 3.0e-163 | 584.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene74105.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74105.t1 | MTR_7g025010 | 90.842 | 404 | 33 | 1 | 1 | 400 | 1 | 404 | 0.0 | 743 |
MS.gene74105.t1 | MTR_4g088070 | 55.932 | 413 | 128 | 9 | 1 | 400 | 1 | 372 | 4.42e-130 | 380 |
MS.gene74105.t1 | MTR_4g088080 | 56.047 | 339 | 108 | 7 | 7 | 334 | 8 | 316 | 7.42e-104 | 310 |
MS.gene74105.t1 | MTR_2g015000 | 41.284 | 436 | 189 | 12 | 1 | 400 | 1 | 405 | 4.94e-78 | 248 |
MS.gene74105.t1 | MTR_3g462480 | 64.384 | 73 | 26 | 0 | 328 | 400 | 17 | 89 | 3.61e-24 | 95.9 |
MS.gene74105.t1 | MTR_4g088065 | 54.955 | 111 | 33 | 3 | 56 | 161 | 134 | 232 | 5.79e-24 | 100 |
MS.gene74105.t1 | MTR_6g027390 | 65.000 | 60 | 21 | 0 | 39 | 98 | 24 | 83 | 9.82e-23 | 97.8 |
MS.gene74105.t1 | MTR_7g086940 | 68.333 | 60 | 19 | 0 | 37 | 96 | 18 | 77 | 1.34e-22 | 96.7 |
MS.gene74105.t1 | MTR_4g084550 | 41.667 | 84 | 49 | 0 | 27 | 110 | 44 | 127 | 2.62e-18 | 82.8 |
MS.gene74105.t1 | MTR_5g081990 | 41.250 | 80 | 47 | 0 | 29 | 108 | 15 | 94 | 6.35e-16 | 75.9 |
MS.gene74105.t1 | MTR_8g107210 | 50.000 | 62 | 31 | 0 | 47 | 108 | 96 | 157 | 9.11e-16 | 78.6 |
MS.gene74105.t1 | MTR_5g021930 | 48.438 | 64 | 32 | 1 | 47 | 109 | 30 | 93 | 6.67e-15 | 75.1 |
MS.gene74105.t1 | MTR_1g115315 | 42.857 | 77 | 40 | 1 | 30 | 106 | 72 | 144 | 3.38e-14 | 72.8 |
MS.gene74105.t1 | MTR_1g115315 | 42.857 | 77 | 40 | 1 | 30 | 106 | 72 | 144 | 3.62e-14 | 72.4 |
MS.gene74105.t1 | MTR_1g019130 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 1.32e-13 | 70.1 |
MS.gene74105.t1 | MTR_4g063735 | 45.161 | 62 | 34 | 0 | 47 | 108 | 25 | 86 | 2.71e-13 | 69.7 |
MS.gene74105.t1 | MTR_1g019130 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 4.24e-13 | 68.9 |
MS.gene74105.t1 | MTR_3g115620 | 44.444 | 63 | 35 | 0 | 45 | 107 | 80 | 142 | 6.09e-13 | 68.2 |
MS.gene74105.t1 | MTR_7g060630 | 41.096 | 73 | 43 | 0 | 41 | 113 | 2 | 74 | 1.54e-12 | 66.6 |
MS.gene74105.t1 | MTR_0777s0020 | 50.575 | 87 | 38 | 1 | 80 | 161 | 50 | 136 | 5.75e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74105.t1 | AT5G45980 | 53.125 | 128 | 52 | 1 | 1 | 120 | 1 | 128 | 1.33e-40 | 147 |
MS.gene74105.t1 | AT5G45980 | 40.000 | 90 | 45 | 2 | 320 | 400 | 235 | 324 | 3.66e-11 | 64.3 |
MS.gene74105.t1 | AT3G03660 | 70.370 | 54 | 16 | 0 | 45 | 98 | 31 | 84 | 4.42e-22 | 95.5 |
MS.gene74105.t1 | AT3G03660 | 70.370 | 54 | 16 | 0 | 45 | 98 | 31 | 84 | 8.18e-22 | 95.1 |
MS.gene74105.t1 | AT3G03660 | 67.797 | 59 | 18 | 1 | 41 | 98 | 26 | 84 | 9.85e-22 | 95.1 |
MS.gene74105.t1 | AT3G03660 | 67.797 | 59 | 18 | 1 | 41 | 98 | 26 | 84 | 1.67e-21 | 94.7 |
MS.gene74105.t1 | AT5G17810 | 68.519 | 54 | 17 | 0 | 45 | 98 | 19 | 72 | 3.61e-21 | 92.8 |
MS.gene74105.t1 | AT5G17810 | 68.519 | 54 | 17 | 0 | 45 | 98 | 19 | 72 | 3.61e-21 | 92.8 |
MS.gene74105.t1 | AT5G17810 | 68.519 | 54 | 17 | 0 | 45 | 98 | 19 | 72 | 3.69e-21 | 92.8 |
MS.gene74105.t1 | AT3G18010 | 38.384 | 99 | 52 | 2 | 47 | 145 | 76 | 165 | 3.38e-15 | 76.6 |
MS.gene74105.t1 | AT5G05770 | 40.000 | 75 | 45 | 0 | 47 | 121 | 29 | 103 | 3.58e-15 | 72.0 |
MS.gene74105.t1 | AT3G11260 | 45.312 | 64 | 35 | 0 | 47 | 110 | 24 | 87 | 1.46e-14 | 72.0 |
MS.gene74105.t1 | AT2G17950 | 48.438 | 64 | 32 | 1 | 47 | 109 | 38 | 101 | 2.61e-14 | 73.6 |
MS.gene74105.t1 | AT4G35550 | 46.032 | 63 | 34 | 0 | 45 | 107 | 97 | 159 | 3.62e-14 | 72.8 |
MS.gene74105.t1 | AT1G46480 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 8.84e-14 | 70.1 |
MS.gene74105.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 45 | 107 | 31 | 93 | 1.24e-13 | 68.6 |
MS.gene74105.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 45 | 107 | 93 | 155 | 2.53e-13 | 68.9 |
MS.gene74105.t1 | AT1G20700 | 44.444 | 63 | 35 | 0 | 45 | 107 | 93 | 155 | 2.83e-13 | 68.9 |
MS.gene74105.t1 | AT1G46480 | 46.774 | 62 | 33 | 0 | 47 | 108 | 90 | 151 | 4.12e-13 | 69.3 |
MS.gene74105.t1 | AT2G28610 | 42.647 | 68 | 39 | 0 | 41 | 108 | 2 | 69 | 1.32e-12 | 67.8 |
MS.gene74105.t1 | AT5G59340 | 41.935 | 62 | 36 | 0 | 47 | 108 | 14 | 75 | 1.74e-12 | 67.4 |
MS.gene74105.t1 | AT2G01500 | 40.506 | 79 | 39 | 1 | 31 | 101 | 37 | 115 | 2.87e-12 | 67.0 |
MS.gene74105.t1 | AT2G33880 | 48.276 | 58 | 30 | 0 | 343 | 400 | 320 | 377 | 3.94e-12 | 67.8 |
MS.gene74105.t1 | AT2G33880 | 48.276 | 58 | 30 | 0 | 343 | 400 | 320 | 377 | 5.20e-12 | 67.4 |
MS.gene74105.t1 | AT5G46010 | 46.154 | 65 | 34 | 1 | 43 | 106 | 50 | 114 | 1.34e-11 | 61.6 |
Find 110 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATCTTGGCTTTGGTTC+TGG | 0.191744 | 7.4:+76324057 | None:intergenic |
CAAGAACCACAACTTAATTT+TGG | 0.218741 | 7.4:-76323319 | MS.gene74105:CDS |
ATGAACTATGGAAGTGTTAA+TGG | 0.219154 | 7.4:-76323511 | MS.gene74105:CDS |
GGGTGTGGGTGGTTGTAAAT+TGG | 0.233407 | 7.4:+76323615 | None:intergenic |
ATGCGAATTTGTTGTGGTTT+TGG | 0.249723 | 7.4:+76324033 | None:intergenic |
CATAGGTTTAATCACTTATC+TGG | 0.257497 | 7.4:-76323538 | MS.gene74105:CDS |
CACCATCCCTGAGTTGAAAA+TGG | 0.259677 | 7.4:+76324002 | None:intergenic |
TGACTCTTCTCTTGATCATA+TGG | 0.265582 | 7.4:+76323376 | None:intergenic |
AAAGGATGCACGAACGTTAA+AGG | 0.277456 | 7.4:+76322710 | None:intergenic |
AATAAGCATCAACTTGGTTT+TGG | 0.278040 | 7.4:+76323656 | None:intergenic |
TTATCTGGTTTCATGAACTA+TGG | 0.293987 | 7.4:-76323523 | MS.gene74105:CDS |
TTAGGCACTACTTCTTCATT+AGG | 0.295012 | 7.4:+76323577 | None:intergenic |
AATTAAGTTGTGGTTCTTGC+TGG | 0.337280 | 7.4:+76323323 | None:intergenic |
TTTGGGTTCCATCTTGGCTT+TGG | 0.347448 | 7.4:+76324051 | None:intergenic |
TCATCATCGTCATCTTCTTC+TGG | 0.355757 | 7.4:-76323787 | MS.gene74105:CDS |
CTCAACTCGTCTCTCTTAAC+TGG | 0.358193 | 7.4:-76324925 | MS.gene74105:intron |
TTTAACGTTCGTGCATCCTT+TGG | 0.359074 | 7.4:-76322708 | MS.gene74105:CDS |
CGTGAACAATTACAAGAGTT+TGG | 0.359135 | 7.4:-76323949 | MS.gene74105:CDS |
ATCTTTGTAATTTCCTCCCT+TGG | 0.362137 | 7.4:+76323973 | None:intergenic |
CACGAGATCATCATGAACTA+TGG | 0.373617 | 7.4:-76323430 | MS.gene74105:CDS |
ATTGTAATTTCGAACAATAT+CGG | 0.382398 | 7.4:-76323739 | MS.gene74105:CDS |
TACTAAGGACGCCTCATTCA+TGG | 0.386072 | 7.4:-76322745 | MS.gene74105:CDS |
TAGGCACTACTTCTTCATTA+GGG | 0.391137 | 7.4:+76323578 | None:intergenic |
TCCAGTTCTAACCGATGAAT+GGG | 0.405372 | 7.4:-76322652 | MS.gene74105:CDS |
TGTGGTGTTGTCATGGCATT+AGG | 0.415749 | 7.4:+76323559 | None:intergenic |
TGTTAATGGAAGCTCCTCTA+TGG | 0.421099 | 7.4:-76323497 | MS.gene74105:CDS |
TTCGAAATTACAATTTCATC+GGG | 0.427130 | 7.4:+76323748 | None:intergenic |
TCAGGATTTGGCGTGGAAGA+TGG | 0.430982 | 7.4:-76322789 | MS.gene74105:intron |
CCCCATTCATCGGTTAGAAC+TGG | 0.434360 | 7.4:+76322651 | None:intergenic |
ATGGAGAATGGAACAGCAAC+AGG | 0.436329 | 7.4:+76323223 | None:intergenic |
GCCTTGAGAATTCCGTTGGT+TGG | 0.439358 | 7.4:+76324948 | None:intergenic |
GTTGTAAATTGGTTTCAGTC+GGG | 0.445592 | 7.4:+76323626 | None:intergenic |
TTGTAATTTCCTCCCTTGGT+GGG | 0.445834 | 7.4:+76323977 | None:intergenic |
CCATGGTGCTACTTATTACC+TGG | 0.446959 | 7.4:-76322607 | MS.gene74105:intron |
AAGGATGCACGAACGTTAAA+GGG | 0.448612 | 7.4:+76322711 | None:intergenic |
ATCAACATTCTGTTGAGGTA+AGG | 0.456180 | 7.4:+76323468 | None:intergenic |
CTCCAGTTCTAACCGATGAA+TGG | 0.457716 | 7.4:-76322653 | MS.gene74105:CDS |
CGCCTCATTCATGGTTGATG+TGG | 0.462527 | 7.4:-76322736 | MS.gene74105:CDS |
GCAGTTCTCTTTGACTCCTC+TGG | 0.463999 | 7.4:-76322678 | MS.gene74105:CDS |
GCCTCATTCATGGTTGATGT+GGG | 0.464076 | 7.4:-76322735 | MS.gene74105:CDS |
GGATTCTCCAATGGTAATGA+TGG | 0.466609 | 7.4:-76323718 | MS.gene74105:CDS |
CACCATGGTGGAGCGATTCA+AGG | 0.469605 | 7.4:+76322622 | None:intergenic |
GTTCGAAATTACAATTTCAT+CGG | 0.473146 | 7.4:+76323747 | None:intergenic |
GGTTGTAAATTGGTTTCAGT+CGG | 0.475867 | 7.4:+76323625 | None:intergenic |
GACTCTTCTCTTGATCATAT+GGG | 0.477410 | 7.4:+76323377 | None:intergenic |
TCAACATTCTGTTGAGGTAA+GGG | 0.481383 | 7.4:+76323469 | None:intergenic |
TTTGTAATTTCCTCCCTTGG+TGG | 0.484315 | 7.4:+76323976 | None:intergenic |
CTCCAGAACCAAAGCCAAGA+TGG | 0.487752 | 7.4:-76324059 | MS.gene74105:CDS |
GTGTTTCTCGTTTCTTGTTG+TGG | 0.496273 | 7.4:+76323851 | None:intergenic |
CCGATGGTAGTGGGAGGAAG+AGG | 0.502096 | 7.4:+76323250 | None:intergenic |
ATTCCGTTGGTTGGACGCAT+TGG | 0.507387 | 7.4:+76324957 | None:intergenic |
AATTACAATTTCATCGGGTG+AGG | 0.510684 | 7.4:+76323753 | None:intergenic |
AACAGGTGCACCGATGGTAG+TGG | 0.510741 | 7.4:+76323240 | None:intergenic |
AAATATTGTTTAGGTGGAGA+TGG | 0.518896 | 7.4:-76324093 | MS.gene74105:intron |
ATCATATGGGTCATCGATTG+AGG | 0.526739 | 7.4:+76323390 | None:intergenic |
CACCATCCCATCATTACCAT+TGG | 0.529069 | 7.4:+76323711 | None:intergenic |
TTGAAACCAGTAAAAGACAT+TGG | 0.529718 | 7.4:+76323912 | None:intergenic |
TGAGGCCTTGAGAATTCCGT+TGG | 0.536803 | 7.4:+76324944 | None:intergenic |
TGATGATTAACAATGGAGAA+TGG | 0.537384 | 7.4:+76323211 | None:intergenic |
CCTCTTCCTCCCACTACCAT+CGG | 0.542954 | 7.4:-76323250 | MS.gene74105:CDS |
AGAAGATGACGATGATGAGT+TGG | 0.545042 | 7.4:+76323792 | None:intergenic |
GAAGATGACGATGATGAGTT+GGG | 0.545800 | 7.4:+76323793 | None:intergenic |
TCGAGAATGCGAATTTGTTG+TGG | 0.549826 | 7.4:+76324027 | None:intergenic |
GCTAGGCCAATGTTTGTTCG+AGG | 0.550853 | 7.4:+76324996 | None:intergenic |
AAGGGTAACACCCCATTCAT+CGG | 0.554431 | 7.4:+76322641 | None:intergenic |
TTACAAGAGTTTGGTCAAGT+TGG | 0.556243 | 7.4:-76323940 | MS.gene74105:CDS |
AACAATATCGGATTCTCCAA+TGG | 0.563774 | 7.4:-76323727 | MS.gene74105:CDS |
CCCCACATCAACCATGAATG+AGG | 0.565657 | 7.4:+76322734 | None:intergenic |
GTAGACTTCTTGAACATGCT+AGG | 0.571860 | 7.4:+76324979 | None:intergenic |
ACCATGGTGGAGCGATTCAA+GGG | 0.572852 | 7.4:+76322623 | None:intergenic |
TGGCTTCCTCGAACAAACAT+TGG | 0.573120 | 7.4:-76325002 | MS.gene74105:CDS |
CGAGAAACACAACAAAACTC+TGG | 0.574956 | 7.4:-76323838 | MS.gene74105:CDS |
GATTCTCCAATGGTAATGAT+GGG | 0.579234 | 7.4:-76323717 | MS.gene74105:CDS |
TTTGTTTGCTTCTAGACTTG+CGG | 0.582777 | 7.4:+76323887 | None:intergenic |
AAACCTATGTGGTGTTGTCA+TGG | 0.586615 | 7.4:+76323552 | None:intergenic |
TTGTAAATTGGTTTCAGTCG+GGG | 0.588784 | 7.4:+76323627 | None:intergenic |
AAAATGTACTGTGATTACTA+AGG | 0.592453 | 7.4:-76322760 | MS.gene74105:CDS |
CTCCAATGGTAATGATGGGA+TGG | 0.597152 | 7.4:-76323713 | MS.gene74105:CDS |
AACAGCAACAGGTGCACCGA+TGG | 0.597507 | 7.4:+76323234 | None:intergenic |
ATTGTTAATCATCAACGTCA+AGG | 0.598673 | 7.4:-76323202 | MS.gene74105:intron |
TTGGTTCACCGAGACTGCGG+GGG | 0.602191 | 7.4:+76323675 | None:intergenic |
TCCAACCAACGGAATTCTCA+AGG | 0.602756 | 7.4:-76324949 | MS.gene74105:CDS |
GAGAACTGCTCGATCTCCAA+AGG | 0.604797 | 7.4:+76322692 | None:intergenic |
CTACCAATGCGTCCAACCAA+CGG | 0.608541 | 7.4:-76324960 | MS.gene74105:CDS |
GATAAGTGATTAAACCTATG+TGG | 0.608582 | 7.4:+76323541 | None:intergenic |
TGTGAAAATAAGCATCAACT+TGG | 0.611249 | 7.4:+76323650 | None:intergenic |
TGATCAAGAGAAGAGTCAAG+AGG | 0.611568 | 7.4:-76323371 | MS.gene74105:CDS |
GCAACACCAAAATTAAGTTG+TGG | 0.616333 | 7.4:+76323313 | None:intergenic |
AGGTAAGGGTTGAACCATAG+AGG | 0.616459 | 7.4:+76323483 | None:intergenic |
ACAGGTGCACCGATGGTAGT+GGG | 0.622757 | 7.4:+76323241 | None:intergenic |
TTTGGTTCACCGAGACTGCG+GGG | 0.623412 | 7.4:+76323674 | None:intergenic |
TTGACGTTGATGATTAACAA+TGG | 0.627632 | 7.4:+76323204 | None:intergenic |
ACCCTTGAATCGCTCCACCA+TGG | 0.630339 | 7.4:-76322624 | MS.gene74105:CDS |
CAGTTAAGAGAGACGAGTTG+AGG | 0.631435 | 7.4:+76324926 | None:intergenic |
GATGGTGAACCCACCAAGGG+AGG | 0.632998 | 7.4:-76323986 | MS.gene74105:CDS |
ATGCCATGACAACACCACAT+AGG | 0.641572 | 7.4:-76323555 | MS.gene74105:CDS |
ATTTGGCGTGGAAGATGGAG+CGG | 0.645210 | 7.4:-76322784 | MS.gene74105:CDS |
CAGGGATGGTGAACCCACCA+AGG | 0.647061 | 7.4:-76323990 | MS.gene74105:CDS |
GGTAATAAGTAGCACCATGG+TGG | 0.650858 | 7.4:+76322610 | None:intergenic |
GGTACATCAACATTCTGTTG+AGG | 0.653303 | 7.4:+76323463 | None:intergenic |
CAATGGTAATGATGGGATGG+TGG | 0.654789 | 7.4:-76323710 | MS.gene74105:CDS |
CCTCATTCATGGTTGATGTG+GGG | 0.657797 | 7.4:-76322734 | MS.gene74105:CDS |
ATGATCTCGTGATTAACTAG+AGG | 0.662842 | 7.4:+76323442 | None:intergenic |
AGGGATGGTGAACCCACCAA+GGG | 0.665906 | 7.4:-76323989 | MS.gene74105:CDS |
CCAGTTCTAACCGATGAATG+GGG | 0.682383 | 7.4:-76322651 | MS.gene74105:CDS |
GGTTAGAACTGGAGTACCAG+AGG | 0.692890 | 7.4:+76322662 | None:intergenic |
GTGTTTGTCAGGATTTGGCG+TGG | 0.696978 | 7.4:-76322796 | MS.gene74105:intron |
CCAGGTAATAAGTAGCACCA+TGG | 0.700447 | 7.4:+76322607 | None:intergenic |
GATGACGATGATGAGTTGGG+TGG | 0.712576 | 7.4:+76323796 | None:intergenic |
GGTGCACCGATGGTAGTGGG+AGG | 0.725348 | 7.4:+76323244 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAATAATAATAAGTAGA+GGG | + | chr7.4:76322645-76322664 | None:intergenic | 10.0% |
!! | TAAATAATAATAATAAGTAG+AGG | + | chr7.4:76322646-76322665 | None:intergenic | 10.0% |
!!! | TAATATTTCTATAAAACAAT+TGG | + | chr7.4:76323161-76323180 | None:intergenic | 10.0% |
!!! | ATTTGAAAGTTTAGATTTTT+AGG | - | chr7.4:76322876-76322895 | MS.gene74105:intron | 15.0% |
!!! | TTTGAAAGTTTAGATTTTTA+GGG | - | chr7.4:76322877-76322896 | MS.gene74105:intron | 15.0% |
!! | ATTGTAATTTCGAACAATAT+CGG | - | chr7.4:76323792-76323811 | MS.gene74105:CDS | 20.0% |
!! | GAAATATTATAATACTCCAT+AGG | - | chr7.4:76323172-76323191 | MS.gene74105:intron | 20.0% |
!! | TAAACAAAGCAAATGTTATA+AGG | + | chr7.4:76324961-76324980 | None:intergenic | 20.0% |
!! | TTTAACAAATATTGTTTAGG+TGG | - | chr7.4:76323432-76323451 | MS.gene74105:CDS | 20.0% |
!!! | AACTTAGTTTGAATTTTAGT+TGG | - | chr7.4:76324433-76324452 | MS.gene74105:intron | 20.0% |
!!! | AATTTTAAATCGATTCGTTT+AGG | + | chr7.4:76322859-76322878 | None:intergenic | 20.0% |
!!! | GCTTTTAACAAATATTGTTT+AGG | - | chr7.4:76323429-76323448 | MS.gene74105:CDS | 20.0% |
!!! | TATAGAAGTATCATAATACT+CGG | - | chr7.4:76323339-76323358 | MS.gene74105:CDS | 20.0% |
!!! | TTGTTTTATTGTATACACTA+CGG | - | chr7.4:76323099-76323118 | MS.gene74105:intron | 20.0% |
! | AAAATGTACTGTGATTACTA+AGG | - | chr7.4:76324771-76324790 | MS.gene74105:intron | 25.0% |
! | ACCAGTGTATATGATTATAA+GGG | - | chr7.4:76324993-76325012 | MS.gene74105:CDS | 25.0% |
! | ATGAACTATGGAAGTAAAAA+TGG | - | chr7.4:76324113-76324132 | MS.gene74105:intron | 25.0% |
! | GCTAAAATTTGATCTATACT+CGG | - | chr7.4:76322899-76322918 | MS.gene74105:intron | 25.0% |
! | GTTCGAAATTACAATTTCAT+CGG | + | chr7.4:76323787-76323806 | None:intergenic | 25.0% |
! | TAATAAAACGAAATCATACC+TGG | + | chr7.4:76324627-76324646 | None:intergenic | 25.0% |
! | TGAAAATATAATTGCTCGAA+CGG | + | chr7.4:76322964-76322983 | None:intergenic | 25.0% |
! | TTCGAAATTACAATTTCATC+GGG | + | chr7.4:76323786-76323805 | None:intergenic | 25.0% |
! | TTTGATTAGATCTAACACAT+AGG | + | chr7.4:76322681-76322700 | None:intergenic | 25.0% |
!! | ATACCTGGAACTTTAAATTT+TGG | + | chr7.4:76324612-76324631 | None:intergenic | 25.0% |
!! | TACCTGGAACTTTAAATTTT+GGG | + | chr7.4:76324611-76324630 | None:intergenic | 25.0% |
!! | TGAGTTTATAGTCATTGATT+TGG | + | chr7.4:76322727-76322746 | None:intergenic | 25.0% |
!!! | GTTTAGGTTTTTTCTATGTT+GGG | + | chr7.4:76322843-76322862 | None:intergenic | 25.0% |
!!! | TTTAGGTTTTTTCTATGTTG+GGG | + | chr7.4:76322842-76322861 | None:intergenic | 25.0% |
!!! | TTTCGTTTTATTATATCCCA+CGG | - | chr7.4:76324634-76324653 | MS.gene74105:intron | 25.0% |
!!! | TTTTTGTTGTTTTATCCATC+TGG | + | chr7.4:76324534-76324553 | None:intergenic | 25.0% |
AAATATTGTTTAGGTGGAGA+TGG | - | chr7.4:76323438-76323457 | MS.gene74105:CDS | 30.0% | |
ATTAGGGAAAGAGAAAAATG+GGG | + | chr7.4:76323940-76323959 | None:intergenic | 30.0% | |
ATTGTTAATCATCAACGTCA+AGG | - | chr7.4:76324329-76324348 | MS.gene74105:intron | 30.0% | |
CAAAACGACTTAAATTGATG+TGG | - | chr7.4:76322757-76322776 | MS.gene74105:CDS | 30.0% | |
CACCAGTGTATATGATTATA+AGG | - | chr7.4:76324992-76325011 | MS.gene74105:CDS | 30.0% | |
CATAGGTTTAATCACTTATC+TGG | - | chr7.4:76323993-76324012 | MS.gene74105:CDS | 30.0% | |
CATTAGGGAAAGAGAAAAAT+GGG | + | chr7.4:76323941-76323960 | None:intergenic | 30.0% | |
CTTTACTTACCTTCTGATTA+AGG | - | chr7.4:76324475-76324494 | MS.gene74105:intron | 30.0% | |
GATAAGTGATTAAACCTATG+TGG | + | chr7.4:76323993-76324012 | None:intergenic | 30.0% | |
GTAAACTACAATATGACCTA+TGG | + | chr7.4:76323191-76323210 | None:intergenic | 30.0% | |
GTAAACTTAGCATGTTTGAT+TGG | - | chr7.4:76323407-76323426 | MS.gene74105:CDS | 30.0% | |
TCATTAGGGAAAGAGAAAAA+TGG | + | chr7.4:76323942-76323961 | None:intergenic | 30.0% | |
TCCCTTATAATCATATACAC+TGG | + | chr7.4:76324997-76325016 | None:intergenic | 30.0% | |
TGATGATTAACAATGGAGAA+TGG | + | chr7.4:76324323-76324342 | None:intergenic | 30.0% | |
TGTGAAAATAAGCATCAACT+TGG | + | chr7.4:76323884-76323903 | None:intergenic | 30.0% | |
TTATCTTCATCTGTTTGCTT+TGG | + | chr7.4:76323133-76323152 | None:intergenic | 30.0% | |
TTGAAACCAGTAAAAGACAT+TGG | + | chr7.4:76323622-76323641 | None:intergenic | 30.0% | |
! | AATAAGCATCAACTTGGTTT+TGG | + | chr7.4:76323878-76323897 | None:intergenic | 30.0% |
! | CAAGAACCACAACTTAATTT+TGG | - | chr7.4:76324212-76324231 | MS.gene74105:intron | 30.0% |
! | TTATCTGGTTTCATGAACTA+TGG | - | chr7.4:76324008-76324027 | MS.gene74105:CDS | 30.0% |
! | TTTTCTTTTGTGTGTTTGTC+AGG | - | chr7.4:76324724-76324743 | MS.gene74105:intron | 30.0% |
!! | ATGAACTATGGAAGTGTTAA+TGG | - | chr7.4:76324020-76324039 | MS.gene74105:CDS | 30.0% |
!! | TTGACGTTGATGATTAACAA+TGG | + | chr7.4:76324330-76324349 | None:intergenic | 30.0% |
!!! | CGTTTAGGTTTTTTCTATGT+TGG | + | chr7.4:76322844-76322863 | None:intergenic | 30.0% |
AACAATATCGGATTCTCCAA+TGG | - | chr7.4:76323804-76323823 | MS.gene74105:CDS | 35.0% | |
AATTACAATTTCATCGGGTG+AGG | + | chr7.4:76323781-76323800 | None:intergenic | 35.0% | |
ATCAACATTCTGTTGAGGTA+AGG | + | chr7.4:76324066-76324085 | None:intergenic | 35.0% | |
ATCTTTGTAATTTCCTCCCT+TGG | + | chr7.4:76323561-76323580 | None:intergenic | 35.0% | |
ATGATCTCGTGATTAACTAG+AGG | + | chr7.4:76324092-76324111 | None:intergenic | 35.0% | |
CGTGAACAATTACAAGAGTT+TGG | - | chr7.4:76323582-76323601 | MS.gene74105:CDS | 35.0% | |
GACTCTTCTCTTGATCATAT+GGG | + | chr7.4:76324157-76324176 | None:intergenic | 35.0% | |
TAGGCACTACTTCTTCATTA+GGG | + | chr7.4:76323956-76323975 | None:intergenic | 35.0% | |
TATAAGGAAAAATACGCACC+AGG | + | chr7.4:76324945-76324964 | None:intergenic | 35.0% | |
TCAACATTCTGTTGAGGTAA+GGG | + | chr7.4:76324065-76324084 | None:intergenic | 35.0% | |
TGACTCTTCTCTTGATCATA+TGG | + | chr7.4:76324158-76324177 | None:intergenic | 35.0% | |
TTACAAGAGTTTGGTCAAGT+TGG | - | chr7.4:76323591-76323610 | MS.gene74105:CDS | 35.0% | |
TTAGGCACTACTTCTTCATT+AGG | + | chr7.4:76323957-76323976 | None:intergenic | 35.0% | |
TTAGGGAAAGAGAAAAATGG+GGG | + | chr7.4:76323939-76323958 | None:intergenic | 35.0% | |
TTTGTGTGTTTGTCAGGATT+TGG | - | chr7.4:76324730-76324749 | MS.gene74105:intron | 35.0% | |
TTTGTTTGCTTCTAGACTTG+CGG | + | chr7.4:76323647-76323666 | None:intergenic | 35.0% | |
! | AATTAAGTTGTGGTTCTTGC+TGG | + | chr7.4:76324211-76324230 | None:intergenic | 35.0% |
! | CACCCAAAATTTAAAGTTCC+AGG | - | chr7.4:76324606-76324625 | MS.gene74105:intron | 35.0% |
! | GATTCTCCAATGGTAATGAT+GGG | - | chr7.4:76323814-76323833 | MS.gene74105:CDS | 35.0% |
! | GCAACACCAAAATTAAGTTG+TGG | + | chr7.4:76324221-76324240 | None:intergenic | 35.0% |
! | GGTTGTAAATTGGTTTCAGT+CGG | + | chr7.4:76323909-76323928 | None:intergenic | 35.0% |
! | GTTGTAAATTGGTTTCAGTC+GGG | + | chr7.4:76323908-76323927 | None:intergenic | 35.0% |
! | TTGTAAATTGGTTTCAGTCG+GGG | + | chr7.4:76323907-76323926 | None:intergenic | 35.0% |
!!! | ATGCGAATTTGTTGTGGTTT+TGG | + | chr7.4:76323501-76323520 | None:intergenic | 35.0% |
!!! | TGATGTGGTTTTTTCCATGT+CGG | - | chr7.4:76322772-76322791 | MS.gene74105:CDS | 35.0% |
!!! | TGCGAATTTGTTGTGGTTTT+GGG | + | chr7.4:76323500-76323519 | None:intergenic | 35.0% |
AAAGGATGCACGAACGTTAA+AGG | + | chr7.4:76324824-76324843 | None:intergenic | 40.0% | |
AAGGATGCACGAACGTTAAA+GGG | + | chr7.4:76324823-76324842 | None:intergenic | 40.0% | |
AGAAGATGACGATGATGAGT+TGG | + | chr7.4:76323742-76323761 | None:intergenic | 40.0% | |
CACGAGATCATCATGAACTA+TGG | - | chr7.4:76324101-76324120 | MS.gene74105:intron | 40.0% | |
CGAGAAACACAACAAAACTC+TGG | - | chr7.4:76323693-76323712 | MS.gene74105:CDS | 40.0% | |
GAAGATGACGATGATGAGTT+GGG | + | chr7.4:76323741-76323760 | None:intergenic | 40.0% | |
GGTACATCAACATTCTGTTG+AGG | + | chr7.4:76324071-76324090 | None:intergenic | 40.0% | |
GTAGACTTCTTGAACATGCT+AGG | + | chr7.4:76322555-76322574 | None:intergenic | 40.0% | |
GTGTTTCTCGTTTCTTGTTG+TGG | + | chr7.4:76323683-76323702 | None:intergenic | 40.0% | |
TCATCATCGTCATCTTCTTC+TGG | - | chr7.4:76323744-76323763 | MS.gene74105:CDS | 40.0% | |
TCGCATTTGCCTTAATCAGA+AGG | + | chr7.4:76324487-76324506 | None:intergenic | 40.0% | |
TGATCAAGAGAAGAGTCAAG+AGG | - | chr7.4:76324160-76324179 | MS.gene74105:intron | 40.0% | |
TGTTAATGGAAGCTCCTCTA+TGG | - | chr7.4:76324034-76324053 | MS.gene74105:CDS | 40.0% | |
TTCATCTCTCACATGCAACT+TGG | + | chr7.4:76324704-76324723 | None:intergenic | 40.0% | |
TTGTAATTTCCTCCCTTGGT+GGG | + | chr7.4:76323557-76323576 | None:intergenic | 40.0% | |
TTGTTTATATGACCCCGACA+TGG | + | chr7.4:76322789-76322808 | None:intergenic | 40.0% | |
TTTAACGTTCGTGCATCCTT+TGG | - | chr7.4:76324823-76324842 | MS.gene74105:intron | 40.0% | |
TTTGTAATTTCCTCCCTTGG+TGG | + | chr7.4:76323558-76323577 | None:intergenic | 40.0% | |
! | AAAGAGAAAAATGGGGGTGT+GGG | + | chr7.4:76323933-76323952 | None:intergenic | 40.0% |
! | ATCATATGGGTCATCGATTG+AGG | + | chr7.4:76324144-76324163 | None:intergenic | 40.0% |
! | GGATTCTCCAATGGTAATGA+TGG | - | chr7.4:76323813-76323832 | MS.gene74105:CDS | 40.0% |
! | GTGATGCCAATGTCTTTTAC+TGG | - | chr7.4:76323613-76323632 | MS.gene74105:CDS | 40.0% |
! | TCCAGTTCTAACCGATGAAT+GGG | - | chr7.4:76324879-76324898 | MS.gene74105:intron | 40.0% |
!! | AAACCTATGTGGTGTTGTCA+TGG | + | chr7.4:76323982-76324001 | None:intergenic | 40.0% |
!! | TCCATCTGGTTCTCAAAAAG+CGG | + | chr7.4:76324520-76324539 | None:intergenic | 40.0% |
!! | TCGAAGCCATTTTCAACTCA+GGG | - | chr7.4:76323523-76323542 | MS.gene74105:CDS | 40.0% |
!! | TCGAGAATGCGAATTTGTTG+TGG | + | chr7.4:76323507-76323526 | None:intergenic | 40.0% |
!!! | ATGTGGTTTTTTCCATGTCG+GGG | - | chr7.4:76322774-76322793 | MS.gene74105:CDS | 40.0% |
!!! | GATGTGGTTTTTTCCATGTC+GGG | - | chr7.4:76322773-76322792 | MS.gene74105:CDS | 40.0% |
AAGGGTAACACCCCATTCAT+CGG | + | chr7.4:76324893-76324912 | None:intergenic | 45.0% | |
AGGTAAGGGTTGAACCATAG+AGG | + | chr7.4:76324051-76324070 | None:intergenic | 45.0% | |
ATGCCATGACAACACCACAT+AGG | - | chr7.4:76323976-76323995 | MS.gene74105:CDS | 45.0% | |
ATGGAGAATGGAACAGCAAC+AGG | + | chr7.4:76324311-76324330 | None:intergenic | 45.0% | |
CACCATCCCATCATTACCAT+TGG | + | chr7.4:76323823-76323842 | None:intergenic | 45.0% | |
CAGTTAAGAGAGACGAGTTG+AGG | + | chr7.4:76322608-76322627 | None:intergenic | 45.0% | |
CCAGGTAATAAGTAGCACCA+TGG | + | chr7.4:76324927-76324946 | None:intergenic | 45.0% | |
CTCAACTCGTCTCTCTTAAC+TGG | - | chr7.4:76322606-76322625 | MS.gene74105:intron | 45.0% | |
GAAAGAGAAAAATGGGGGTG+TGG | + | chr7.4:76323934-76323953 | None:intergenic | 45.0% | |
GGTAATAAGTAGCACCATGG+TGG | + | chr7.4:76324924-76324943 | None:intergenic | 45.0% | |
TACTAAGGACGCCTCATTCA+TGG | - | chr7.4:76324786-76324805 | MS.gene74105:intron | 45.0% | |
TCCAACCAACGGAATTCTCA+AGG | - | chr7.4:76322582-76322601 | MS.gene74105:intron | 45.0% | |
TGGCTTCCTCGAACAAACAT+TGG | - | chr7.4:76322529-76322548 | MS.gene74105:intron | 45.0% | |
! | CAATGGTAATGATGGGATGG+TGG | - | chr7.4:76323821-76323840 | MS.gene74105:CDS | 45.0% |
! | CACCATCCCTGAGTTGAAAA+TGG | + | chr7.4:76323532-76323551 | None:intergenic | 45.0% |
! | CCAGTTCTAACCGATGAATG+GGG | - | chr7.4:76324880-76324899 | MS.gene74105:intron | 45.0% |
! | CCTCATTCATGGTTGATGTG+GGG | - | chr7.4:76324797-76324816 | MS.gene74105:intron | 45.0% |
! | CTCCAATGGTAATGATGGGA+TGG | - | chr7.4:76323818-76323837 | MS.gene74105:CDS | 45.0% |
! | CTCCAGTTCTAACCGATGAA+TGG | - | chr7.4:76324878-76324897 | MS.gene74105:intron | 45.0% |
! | GCCTCATTCATGGTTGATGT+GGG | - | chr7.4:76324796-76324815 | MS.gene74105:intron | 45.0% |
! | TTTGGGTTCCATCTTGGCTT+TGG | + | chr7.4:76323483-76323502 | None:intergenic | 45.0% |
!! | AGCCATTTTCAACTCAGGGA+TGG | - | chr7.4:76323527-76323546 | MS.gene74105:CDS | 45.0% |
!! | CCATGGTGCTACTTATTACC+TGG | - | chr7.4:76324924-76324943 | MS.gene74105:intron | 45.0% |
!! | CTCGAAGCCATTTTCAACTC+AGG | - | chr7.4:76323522-76323541 | MS.gene74105:CDS | 45.0% |
!! | TGTGGTGTTGTCATGGCATT+AGG | + | chr7.4:76323975-76323994 | None:intergenic | 45.0% |
!! | TTCCATCTTGGCTTTGGTTC+TGG | + | chr7.4:76323477-76323496 | None:intergenic | 45.0% |
!!! | TGTGGTTTTGGGTTCCATCT+TGG | + | chr7.4:76323489-76323508 | None:intergenic | 45.0% |
!!! | ATATATTTGTAATTTTTTTA+AGG | + | chr7.4:76324583-76324602 | None:intergenic | 5.0% |
!!! | TATATTTGTAATTTTTTTAA+GGG | + | chr7.4:76324582-76324601 | None:intergenic | 5.0% |
ATTTGGCGTGGAAGATGGAG+CGG | - | chr7.4:76324747-76324766 | MS.gene74105:intron | 50.0% | |
CCCCACATCAACCATGAATG+AGG | + | chr7.4:76324800-76324819 | None:intergenic | 50.0% | |
CTACCAATGCGTCCAACCAA+CGG | - | chr7.4:76322571-76322590 | MS.gene74105:intron | 50.0% | |
CTCCAGAACCAAAGCCAAGA+TGG | - | chr7.4:76323472-76323491 | MS.gene74105:CDS | 50.0% | |
GAGAACTGCTCGATCTCCAA+AGG | + | chr7.4:76324842-76324861 | None:intergenic | 50.0% | |
GCAGTTCTCTTTGACTCCTC+TGG | - | chr7.4:76324853-76324872 | MS.gene74105:intron | 50.0% | |
GCCTTGAGAATTCCGTTGGT+TGG | + | chr7.4:76322586-76322605 | None:intergenic | 50.0% | |
GCTAGGCCAATGTTTGTTCG+AGG | + | chr7.4:76322538-76322557 | None:intergenic | 50.0% | |
GGGTGTGGGTGGTTGTAAAT+TGG | + | chr7.4:76323919-76323938 | None:intergenic | 50.0% | |
GTGTTTGTCAGGATTTGGCG+TGG | - | chr7.4:76324735-76324754 | MS.gene74105:intron | 50.0% | |
TCAGGATTTGGCGTGGAAGA+TGG | - | chr7.4:76324742-76324761 | MS.gene74105:intron | 50.0% | |
TGAGGCCTTGAGAATTCCGT+TGG | + | chr7.4:76322590-76322609 | None:intergenic | 50.0% | |
TTCTAATTCCCCCGCAGTCT+CGG | - | chr7.4:76323848-76323867 | MS.gene74105:CDS | 50.0% | |
! | ACCATGGTGGAGCGATTCAA+GGG | + | chr7.4:76324911-76324930 | None:intergenic | 50.0% |
! | ATTCCGTTGGTTGGACGCAT+TGG | + | chr7.4:76322577-76322596 | None:intergenic | 50.0% |
! | CCCCATTCATCGGTTAGAAC+TGG | + | chr7.4:76324883-76324902 | None:intergenic | 50.0% |
! | CGCCTCATTCATGGTTGATG+TGG | - | chr7.4:76324795-76324814 | MS.gene74105:intron | 50.0% |
! | CTGGTTCTCAAAAAGCGGCT+TGG | + | chr7.4:76324515-76324534 | None:intergenic | 50.0% |
! | GATGACGATGATGAGTTGGG+TGG | + | chr7.4:76323738-76323757 | None:intergenic | 50.0% |
! | GGTTAGAACTGGAGTACCAG+AGG | + | chr7.4:76324872-76324891 | None:intergenic | 50.0% |
!!! | GCCGCTTTTTGAGAACCAGA+TGG | - | chr7.4:76324516-76324535 | MS.gene74105:intron | 50.0% |
!!! | GTTTTGGTTCACCGAGACTG+CGG | + | chr7.4:76323862-76323881 | None:intergenic | 50.0% |
!!! | TTTTGGTTCACCGAGACTGC+GGG | + | chr7.4:76323861-76323880 | None:intergenic | 50.0% |
AACAGCAACAGGTGCACCGA+TGG | + | chr7.4:76324300-76324319 | None:intergenic | 55.0% | |
ACCCTTGAATCGCTCCACCA+TGG | - | chr7.4:76324907-76324926 | MS.gene74105:intron | 55.0% | |
AGGGATGGTGAACCCACCAA+GGG | - | chr7.4:76323542-76323561 | MS.gene74105:CDS | 55.0% | |
CCTCTTCCTCCCACTACCAT+CGG | - | chr7.4:76324281-76324300 | MS.gene74105:intron | 55.0% | |
! | AACAGGTGCACCGATGGTAG+TGG | + | chr7.4:76324294-76324313 | None:intergenic | 55.0% |
! | ACAGGTGCACCGATGGTAGT+GGG | + | chr7.4:76324293-76324312 | None:intergenic | 55.0% |
! | CACCATGGTGGAGCGATTCA+AGG | + | chr7.4:76324912-76324931 | None:intergenic | 55.0% |
! | GAGAAAAATGGGGGTGTGGG+TGG | + | chr7.4:76323930-76323949 | None:intergenic | 55.0% |
! | TTTGGTTCACCGAGACTGCG+GGG | + | chr7.4:76323860-76323879 | None:intergenic | 55.0% |
CAGGGATGGTGAACCCACCA+AGG | - | chr7.4:76323541-76323560 | MS.gene74105:CDS | 60.0% | |
GATGGTGAACCCACCAAGGG+AGG | - | chr7.4:76323545-76323564 | MS.gene74105:CDS | 60.0% | |
TTGGTTCACCGAGACTGCGG+GGG | + | chr7.4:76323859-76323878 | None:intergenic | 60.0% | |
!! | CCGATGGTAGTGGGAGGAAG+AGG | + | chr7.4:76324284-76324303 | None:intergenic | 60.0% |
TGCGCATTGCACGCGTCCGT+GGG | + | chr7.4:76324653-76324672 | None:intergenic | 65.0% | |
TTGCGCATTGCACGCGTCCG+TGG | + | chr7.4:76324654-76324673 | None:intergenic | 65.0% | |
!! | GGTGCACCGATGGTAGTGGG+AGG | + | chr7.4:76324290-76324309 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 76322528 | 76325025 | 76322528 | ID=MS.gene74105 |
chr7.4 | mRNA | 76322528 | 76325025 | 76322528 | ID=MS.gene74105.t1;Parent=MS.gene74105 |
chr7.4 | exon | 76324926 | 76325025 | 76324926 | ID=MS.gene74105.t1.exon1;Parent=MS.gene74105.t1 |
chr7.4 | CDS | 76324926 | 76325025 | 76324926 | ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1 |
chr7.4 | exon | 76323203 | 76324102 | 76323203 | ID=MS.gene74105.t1.exon2;Parent=MS.gene74105.t1 |
chr7.4 | CDS | 76323203 | 76324102 | 76323203 | ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1 |
chr7.4 | exon | 76322608 | 76322807 | 76322608 | ID=MS.gene74105.t1.exon3;Parent=MS.gene74105.t1 |
chr7.4 | CDS | 76322608 | 76322807 | 76322608 | ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1 |
chr7.4 | exon | 76322528 | 76322539 | 76322528 | ID=MS.gene74105.t1.exon4;Parent=MS.gene74105.t1 |
chr7.4 | CDS | 76322528 | 76322539 | 76322528 | ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1 |
Gene Sequence |
Protein sequence |