AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74105


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74105.t1 MTR_7g025010 90.842 404 33 1 1 400 1 404 0.0 743
MS.gene74105.t1 MTR_4g088070 55.932 413 128 9 1 400 1 372 4.42e-130 380
MS.gene74105.t1 MTR_4g088080 56.047 339 108 7 7 334 8 316 7.42e-104 310
MS.gene74105.t1 MTR_2g015000 41.284 436 189 12 1 400 1 405 4.94e-78 248
MS.gene74105.t1 MTR_3g462480 64.384 73 26 0 328 400 17 89 3.61e-24 95.9
MS.gene74105.t1 MTR_4g088065 54.955 111 33 3 56 161 134 232 5.79e-24 100
MS.gene74105.t1 MTR_6g027390 65.000 60 21 0 39 98 24 83 9.82e-23 97.8
MS.gene74105.t1 MTR_7g086940 68.333 60 19 0 37 96 18 77 1.34e-22 96.7
MS.gene74105.t1 MTR_4g084550 41.667 84 49 0 27 110 44 127 2.62e-18 82.8
MS.gene74105.t1 MTR_5g081990 41.250 80 47 0 29 108 15 94 6.35e-16 75.9
MS.gene74105.t1 MTR_8g107210 50.000 62 31 0 47 108 96 157 9.11e-16 78.6
MS.gene74105.t1 MTR_5g021930 48.438 64 32 1 47 109 30 93 6.67e-15 75.1
MS.gene74105.t1 MTR_1g115315 42.857 77 40 1 30 106 72 144 3.38e-14 72.8
MS.gene74105.t1 MTR_1g115315 42.857 77 40 1 30 106 72 144 3.62e-14 72.4
MS.gene74105.t1 MTR_1g019130 46.774 62 33 0 47 108 90 151 1.32e-13 70.1
MS.gene74105.t1 MTR_4g063735 45.161 62 34 0 47 108 25 86 2.71e-13 69.7
MS.gene74105.t1 MTR_1g019130 46.774 62 33 0 47 108 90 151 4.24e-13 68.9
MS.gene74105.t1 MTR_3g115620 44.444 63 35 0 45 107 80 142 6.09e-13 68.2
MS.gene74105.t1 MTR_7g060630 41.096 73 43 0 41 113 2 74 1.54e-12 66.6
MS.gene74105.t1 MTR_0777s0020 50.575 87 38 1 80 161 50 136 5.75e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74105.t1 AT5G45980 53.125 128 52 1 1 120 1 128 1.33e-40 147
MS.gene74105.t1 AT5G45980 40.000 90 45 2 320 400 235 324 3.66e-11 64.3
MS.gene74105.t1 AT3G03660 70.370 54 16 0 45 98 31 84 4.42e-22 95.5
MS.gene74105.t1 AT3G03660 70.370 54 16 0 45 98 31 84 8.18e-22 95.1
MS.gene74105.t1 AT3G03660 67.797 59 18 1 41 98 26 84 9.85e-22 95.1
MS.gene74105.t1 AT3G03660 67.797 59 18 1 41 98 26 84 1.67e-21 94.7
MS.gene74105.t1 AT5G17810 68.519 54 17 0 45 98 19 72 3.61e-21 92.8
MS.gene74105.t1 AT5G17810 68.519 54 17 0 45 98 19 72 3.61e-21 92.8
MS.gene74105.t1 AT5G17810 68.519 54 17 0 45 98 19 72 3.69e-21 92.8
MS.gene74105.t1 AT3G18010 38.384 99 52 2 47 145 76 165 3.38e-15 76.6
MS.gene74105.t1 AT5G05770 40.000 75 45 0 47 121 29 103 3.58e-15 72.0
MS.gene74105.t1 AT3G11260 45.312 64 35 0 47 110 24 87 1.46e-14 72.0
MS.gene74105.t1 AT2G17950 48.438 64 32 1 47 109 38 101 2.61e-14 73.6
MS.gene74105.t1 AT4G35550 46.032 63 34 0 45 107 97 159 3.62e-14 72.8
MS.gene74105.t1 AT1G46480 46.774 62 33 0 47 108 90 151 8.84e-14 70.1
MS.gene74105.t1 AT1G20700 44.444 63 35 0 45 107 31 93 1.24e-13 68.6
MS.gene74105.t1 AT1G20700 44.444 63 35 0 45 107 93 155 2.53e-13 68.9
MS.gene74105.t1 AT1G20700 44.444 63 35 0 45 107 93 155 2.83e-13 68.9
MS.gene74105.t1 AT1G46480 46.774 62 33 0 47 108 90 151 4.12e-13 69.3
MS.gene74105.t1 AT2G28610 42.647 68 39 0 41 108 2 69 1.32e-12 67.8
MS.gene74105.t1 AT5G59340 41.935 62 36 0 47 108 14 75 1.74e-12 67.4
MS.gene74105.t1 AT2G01500 40.506 79 39 1 31 101 37 115 2.87e-12 67.0
MS.gene74105.t1 AT2G33880 48.276 58 30 0 343 400 320 377 3.94e-12 67.8
MS.gene74105.t1 AT2G33880 48.276 58 30 0 343 400 320 377 5.20e-12 67.4
MS.gene74105.t1 AT5G46010 46.154 65 34 1 43 106 50 114 1.34e-11 61.6

Find 110 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATCTTGGCTTTGGTTC+TGG 0.191744 7.4:+76324057 None:intergenic
CAAGAACCACAACTTAATTT+TGG 0.218741 7.4:-76323319 MS.gene74105:CDS
ATGAACTATGGAAGTGTTAA+TGG 0.219154 7.4:-76323511 MS.gene74105:CDS
GGGTGTGGGTGGTTGTAAAT+TGG 0.233407 7.4:+76323615 None:intergenic
ATGCGAATTTGTTGTGGTTT+TGG 0.249723 7.4:+76324033 None:intergenic
CATAGGTTTAATCACTTATC+TGG 0.257497 7.4:-76323538 MS.gene74105:CDS
CACCATCCCTGAGTTGAAAA+TGG 0.259677 7.4:+76324002 None:intergenic
TGACTCTTCTCTTGATCATA+TGG 0.265582 7.4:+76323376 None:intergenic
AAAGGATGCACGAACGTTAA+AGG 0.277456 7.4:+76322710 None:intergenic
AATAAGCATCAACTTGGTTT+TGG 0.278040 7.4:+76323656 None:intergenic
TTATCTGGTTTCATGAACTA+TGG 0.293987 7.4:-76323523 MS.gene74105:CDS
TTAGGCACTACTTCTTCATT+AGG 0.295012 7.4:+76323577 None:intergenic
AATTAAGTTGTGGTTCTTGC+TGG 0.337280 7.4:+76323323 None:intergenic
TTTGGGTTCCATCTTGGCTT+TGG 0.347448 7.4:+76324051 None:intergenic
TCATCATCGTCATCTTCTTC+TGG 0.355757 7.4:-76323787 MS.gene74105:CDS
CTCAACTCGTCTCTCTTAAC+TGG 0.358193 7.4:-76324925 MS.gene74105:intron
TTTAACGTTCGTGCATCCTT+TGG 0.359074 7.4:-76322708 MS.gene74105:CDS
CGTGAACAATTACAAGAGTT+TGG 0.359135 7.4:-76323949 MS.gene74105:CDS
ATCTTTGTAATTTCCTCCCT+TGG 0.362137 7.4:+76323973 None:intergenic
CACGAGATCATCATGAACTA+TGG 0.373617 7.4:-76323430 MS.gene74105:CDS
ATTGTAATTTCGAACAATAT+CGG 0.382398 7.4:-76323739 MS.gene74105:CDS
TACTAAGGACGCCTCATTCA+TGG 0.386072 7.4:-76322745 MS.gene74105:CDS
TAGGCACTACTTCTTCATTA+GGG 0.391137 7.4:+76323578 None:intergenic
TCCAGTTCTAACCGATGAAT+GGG 0.405372 7.4:-76322652 MS.gene74105:CDS
TGTGGTGTTGTCATGGCATT+AGG 0.415749 7.4:+76323559 None:intergenic
TGTTAATGGAAGCTCCTCTA+TGG 0.421099 7.4:-76323497 MS.gene74105:CDS
TTCGAAATTACAATTTCATC+GGG 0.427130 7.4:+76323748 None:intergenic
TCAGGATTTGGCGTGGAAGA+TGG 0.430982 7.4:-76322789 MS.gene74105:intron
CCCCATTCATCGGTTAGAAC+TGG 0.434360 7.4:+76322651 None:intergenic
ATGGAGAATGGAACAGCAAC+AGG 0.436329 7.4:+76323223 None:intergenic
GCCTTGAGAATTCCGTTGGT+TGG 0.439358 7.4:+76324948 None:intergenic
GTTGTAAATTGGTTTCAGTC+GGG 0.445592 7.4:+76323626 None:intergenic
TTGTAATTTCCTCCCTTGGT+GGG 0.445834 7.4:+76323977 None:intergenic
CCATGGTGCTACTTATTACC+TGG 0.446959 7.4:-76322607 MS.gene74105:intron
AAGGATGCACGAACGTTAAA+GGG 0.448612 7.4:+76322711 None:intergenic
ATCAACATTCTGTTGAGGTA+AGG 0.456180 7.4:+76323468 None:intergenic
CTCCAGTTCTAACCGATGAA+TGG 0.457716 7.4:-76322653 MS.gene74105:CDS
CGCCTCATTCATGGTTGATG+TGG 0.462527 7.4:-76322736 MS.gene74105:CDS
GCAGTTCTCTTTGACTCCTC+TGG 0.463999 7.4:-76322678 MS.gene74105:CDS
GCCTCATTCATGGTTGATGT+GGG 0.464076 7.4:-76322735 MS.gene74105:CDS
GGATTCTCCAATGGTAATGA+TGG 0.466609 7.4:-76323718 MS.gene74105:CDS
CACCATGGTGGAGCGATTCA+AGG 0.469605 7.4:+76322622 None:intergenic
GTTCGAAATTACAATTTCAT+CGG 0.473146 7.4:+76323747 None:intergenic
GGTTGTAAATTGGTTTCAGT+CGG 0.475867 7.4:+76323625 None:intergenic
GACTCTTCTCTTGATCATAT+GGG 0.477410 7.4:+76323377 None:intergenic
TCAACATTCTGTTGAGGTAA+GGG 0.481383 7.4:+76323469 None:intergenic
TTTGTAATTTCCTCCCTTGG+TGG 0.484315 7.4:+76323976 None:intergenic
CTCCAGAACCAAAGCCAAGA+TGG 0.487752 7.4:-76324059 MS.gene74105:CDS
GTGTTTCTCGTTTCTTGTTG+TGG 0.496273 7.4:+76323851 None:intergenic
CCGATGGTAGTGGGAGGAAG+AGG 0.502096 7.4:+76323250 None:intergenic
ATTCCGTTGGTTGGACGCAT+TGG 0.507387 7.4:+76324957 None:intergenic
AATTACAATTTCATCGGGTG+AGG 0.510684 7.4:+76323753 None:intergenic
AACAGGTGCACCGATGGTAG+TGG 0.510741 7.4:+76323240 None:intergenic
AAATATTGTTTAGGTGGAGA+TGG 0.518896 7.4:-76324093 MS.gene74105:intron
ATCATATGGGTCATCGATTG+AGG 0.526739 7.4:+76323390 None:intergenic
CACCATCCCATCATTACCAT+TGG 0.529069 7.4:+76323711 None:intergenic
TTGAAACCAGTAAAAGACAT+TGG 0.529718 7.4:+76323912 None:intergenic
TGAGGCCTTGAGAATTCCGT+TGG 0.536803 7.4:+76324944 None:intergenic
TGATGATTAACAATGGAGAA+TGG 0.537384 7.4:+76323211 None:intergenic
CCTCTTCCTCCCACTACCAT+CGG 0.542954 7.4:-76323250 MS.gene74105:CDS
AGAAGATGACGATGATGAGT+TGG 0.545042 7.4:+76323792 None:intergenic
GAAGATGACGATGATGAGTT+GGG 0.545800 7.4:+76323793 None:intergenic
TCGAGAATGCGAATTTGTTG+TGG 0.549826 7.4:+76324027 None:intergenic
GCTAGGCCAATGTTTGTTCG+AGG 0.550853 7.4:+76324996 None:intergenic
AAGGGTAACACCCCATTCAT+CGG 0.554431 7.4:+76322641 None:intergenic
TTACAAGAGTTTGGTCAAGT+TGG 0.556243 7.4:-76323940 MS.gene74105:CDS
AACAATATCGGATTCTCCAA+TGG 0.563774 7.4:-76323727 MS.gene74105:CDS
CCCCACATCAACCATGAATG+AGG 0.565657 7.4:+76322734 None:intergenic
GTAGACTTCTTGAACATGCT+AGG 0.571860 7.4:+76324979 None:intergenic
ACCATGGTGGAGCGATTCAA+GGG 0.572852 7.4:+76322623 None:intergenic
TGGCTTCCTCGAACAAACAT+TGG 0.573120 7.4:-76325002 MS.gene74105:CDS
CGAGAAACACAACAAAACTC+TGG 0.574956 7.4:-76323838 MS.gene74105:CDS
GATTCTCCAATGGTAATGAT+GGG 0.579234 7.4:-76323717 MS.gene74105:CDS
TTTGTTTGCTTCTAGACTTG+CGG 0.582777 7.4:+76323887 None:intergenic
AAACCTATGTGGTGTTGTCA+TGG 0.586615 7.4:+76323552 None:intergenic
TTGTAAATTGGTTTCAGTCG+GGG 0.588784 7.4:+76323627 None:intergenic
AAAATGTACTGTGATTACTA+AGG 0.592453 7.4:-76322760 MS.gene74105:CDS
CTCCAATGGTAATGATGGGA+TGG 0.597152 7.4:-76323713 MS.gene74105:CDS
AACAGCAACAGGTGCACCGA+TGG 0.597507 7.4:+76323234 None:intergenic
ATTGTTAATCATCAACGTCA+AGG 0.598673 7.4:-76323202 MS.gene74105:intron
TTGGTTCACCGAGACTGCGG+GGG 0.602191 7.4:+76323675 None:intergenic
TCCAACCAACGGAATTCTCA+AGG 0.602756 7.4:-76324949 MS.gene74105:CDS
GAGAACTGCTCGATCTCCAA+AGG 0.604797 7.4:+76322692 None:intergenic
CTACCAATGCGTCCAACCAA+CGG 0.608541 7.4:-76324960 MS.gene74105:CDS
GATAAGTGATTAAACCTATG+TGG 0.608582 7.4:+76323541 None:intergenic
TGTGAAAATAAGCATCAACT+TGG 0.611249 7.4:+76323650 None:intergenic
TGATCAAGAGAAGAGTCAAG+AGG 0.611568 7.4:-76323371 MS.gene74105:CDS
GCAACACCAAAATTAAGTTG+TGG 0.616333 7.4:+76323313 None:intergenic
AGGTAAGGGTTGAACCATAG+AGG 0.616459 7.4:+76323483 None:intergenic
ACAGGTGCACCGATGGTAGT+GGG 0.622757 7.4:+76323241 None:intergenic
TTTGGTTCACCGAGACTGCG+GGG 0.623412 7.4:+76323674 None:intergenic
TTGACGTTGATGATTAACAA+TGG 0.627632 7.4:+76323204 None:intergenic
ACCCTTGAATCGCTCCACCA+TGG 0.630339 7.4:-76322624 MS.gene74105:CDS
CAGTTAAGAGAGACGAGTTG+AGG 0.631435 7.4:+76324926 None:intergenic
GATGGTGAACCCACCAAGGG+AGG 0.632998 7.4:-76323986 MS.gene74105:CDS
ATGCCATGACAACACCACAT+AGG 0.641572 7.4:-76323555 MS.gene74105:CDS
ATTTGGCGTGGAAGATGGAG+CGG 0.645210 7.4:-76322784 MS.gene74105:CDS
CAGGGATGGTGAACCCACCA+AGG 0.647061 7.4:-76323990 MS.gene74105:CDS
GGTAATAAGTAGCACCATGG+TGG 0.650858 7.4:+76322610 None:intergenic
GGTACATCAACATTCTGTTG+AGG 0.653303 7.4:+76323463 None:intergenic
CAATGGTAATGATGGGATGG+TGG 0.654789 7.4:-76323710 MS.gene74105:CDS
CCTCATTCATGGTTGATGTG+GGG 0.657797 7.4:-76322734 MS.gene74105:CDS
ATGATCTCGTGATTAACTAG+AGG 0.662842 7.4:+76323442 None:intergenic
AGGGATGGTGAACCCACCAA+GGG 0.665906 7.4:-76323989 MS.gene74105:CDS
CCAGTTCTAACCGATGAATG+GGG 0.682383 7.4:-76322651 MS.gene74105:CDS
GGTTAGAACTGGAGTACCAG+AGG 0.692890 7.4:+76322662 None:intergenic
GTGTTTGTCAGGATTTGGCG+TGG 0.696978 7.4:-76322796 MS.gene74105:intron
CCAGGTAATAAGTAGCACCA+TGG 0.700447 7.4:+76322607 None:intergenic
GATGACGATGATGAGTTGGG+TGG 0.712576 7.4:+76323796 None:intergenic
GGTGCACCGATGGTAGTGGG+AGG 0.725348 7.4:+76323244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAATAATAAGTAGA+GGG + chr7.4:76322645-76322664 None:intergenic 10.0%
!! TAAATAATAATAATAAGTAG+AGG + chr7.4:76322646-76322665 None:intergenic 10.0%
!!! TAATATTTCTATAAAACAAT+TGG + chr7.4:76323161-76323180 None:intergenic 10.0%
!!! ATTTGAAAGTTTAGATTTTT+AGG - chr7.4:76322876-76322895 MS.gene74105:intron 15.0%
!!! TTTGAAAGTTTAGATTTTTA+GGG - chr7.4:76322877-76322896 MS.gene74105:intron 15.0%
!! ATTGTAATTTCGAACAATAT+CGG - chr7.4:76323792-76323811 MS.gene74105:CDS 20.0%
!! GAAATATTATAATACTCCAT+AGG - chr7.4:76323172-76323191 MS.gene74105:intron 20.0%
!! TAAACAAAGCAAATGTTATA+AGG + chr7.4:76324961-76324980 None:intergenic 20.0%
!! TTTAACAAATATTGTTTAGG+TGG - chr7.4:76323432-76323451 MS.gene74105:CDS 20.0%
!!! AACTTAGTTTGAATTTTAGT+TGG - chr7.4:76324433-76324452 MS.gene74105:intron 20.0%
!!! AATTTTAAATCGATTCGTTT+AGG + chr7.4:76322859-76322878 None:intergenic 20.0%
!!! GCTTTTAACAAATATTGTTT+AGG - chr7.4:76323429-76323448 MS.gene74105:CDS 20.0%
!!! TATAGAAGTATCATAATACT+CGG - chr7.4:76323339-76323358 MS.gene74105:CDS 20.0%
!!! TTGTTTTATTGTATACACTA+CGG - chr7.4:76323099-76323118 MS.gene74105:intron 20.0%
! AAAATGTACTGTGATTACTA+AGG - chr7.4:76324771-76324790 MS.gene74105:intron 25.0%
! ACCAGTGTATATGATTATAA+GGG - chr7.4:76324993-76325012 MS.gene74105:CDS 25.0%
! ATGAACTATGGAAGTAAAAA+TGG - chr7.4:76324113-76324132 MS.gene74105:intron 25.0%
! GCTAAAATTTGATCTATACT+CGG - chr7.4:76322899-76322918 MS.gene74105:intron 25.0%
! GTTCGAAATTACAATTTCAT+CGG + chr7.4:76323787-76323806 None:intergenic 25.0%
! TAATAAAACGAAATCATACC+TGG + chr7.4:76324627-76324646 None:intergenic 25.0%
! TGAAAATATAATTGCTCGAA+CGG + chr7.4:76322964-76322983 None:intergenic 25.0%
! TTCGAAATTACAATTTCATC+GGG + chr7.4:76323786-76323805 None:intergenic 25.0%
! TTTGATTAGATCTAACACAT+AGG + chr7.4:76322681-76322700 None:intergenic 25.0%
!! ATACCTGGAACTTTAAATTT+TGG + chr7.4:76324612-76324631 None:intergenic 25.0%
!! TACCTGGAACTTTAAATTTT+GGG + chr7.4:76324611-76324630 None:intergenic 25.0%
!! TGAGTTTATAGTCATTGATT+TGG + chr7.4:76322727-76322746 None:intergenic 25.0%
!!! GTTTAGGTTTTTTCTATGTT+GGG + chr7.4:76322843-76322862 None:intergenic 25.0%
!!! TTTAGGTTTTTTCTATGTTG+GGG + chr7.4:76322842-76322861 None:intergenic 25.0%
!!! TTTCGTTTTATTATATCCCA+CGG - chr7.4:76324634-76324653 MS.gene74105:intron 25.0%
!!! TTTTTGTTGTTTTATCCATC+TGG + chr7.4:76324534-76324553 None:intergenic 25.0%
AAATATTGTTTAGGTGGAGA+TGG - chr7.4:76323438-76323457 MS.gene74105:CDS 30.0%
ATTAGGGAAAGAGAAAAATG+GGG + chr7.4:76323940-76323959 None:intergenic 30.0%
ATTGTTAATCATCAACGTCA+AGG - chr7.4:76324329-76324348 MS.gene74105:intron 30.0%
CAAAACGACTTAAATTGATG+TGG - chr7.4:76322757-76322776 MS.gene74105:CDS 30.0%
CACCAGTGTATATGATTATA+AGG - chr7.4:76324992-76325011 MS.gene74105:CDS 30.0%
CATAGGTTTAATCACTTATC+TGG - chr7.4:76323993-76324012 MS.gene74105:CDS 30.0%
CATTAGGGAAAGAGAAAAAT+GGG + chr7.4:76323941-76323960 None:intergenic 30.0%
CTTTACTTACCTTCTGATTA+AGG - chr7.4:76324475-76324494 MS.gene74105:intron 30.0%
GATAAGTGATTAAACCTATG+TGG + chr7.4:76323993-76324012 None:intergenic 30.0%
GTAAACTACAATATGACCTA+TGG + chr7.4:76323191-76323210 None:intergenic 30.0%
GTAAACTTAGCATGTTTGAT+TGG - chr7.4:76323407-76323426 MS.gene74105:CDS 30.0%
TCATTAGGGAAAGAGAAAAA+TGG + chr7.4:76323942-76323961 None:intergenic 30.0%
TCCCTTATAATCATATACAC+TGG + chr7.4:76324997-76325016 None:intergenic 30.0%
TGATGATTAACAATGGAGAA+TGG + chr7.4:76324323-76324342 None:intergenic 30.0%
TGTGAAAATAAGCATCAACT+TGG + chr7.4:76323884-76323903 None:intergenic 30.0%
TTATCTTCATCTGTTTGCTT+TGG + chr7.4:76323133-76323152 None:intergenic 30.0%
TTGAAACCAGTAAAAGACAT+TGG + chr7.4:76323622-76323641 None:intergenic 30.0%
! AATAAGCATCAACTTGGTTT+TGG + chr7.4:76323878-76323897 None:intergenic 30.0%
! CAAGAACCACAACTTAATTT+TGG - chr7.4:76324212-76324231 MS.gene74105:intron 30.0%
! TTATCTGGTTTCATGAACTA+TGG - chr7.4:76324008-76324027 MS.gene74105:CDS 30.0%
! TTTTCTTTTGTGTGTTTGTC+AGG - chr7.4:76324724-76324743 MS.gene74105:intron 30.0%
!! ATGAACTATGGAAGTGTTAA+TGG - chr7.4:76324020-76324039 MS.gene74105:CDS 30.0%
!! TTGACGTTGATGATTAACAA+TGG + chr7.4:76324330-76324349 None:intergenic 30.0%
!!! CGTTTAGGTTTTTTCTATGT+TGG + chr7.4:76322844-76322863 None:intergenic 30.0%
AACAATATCGGATTCTCCAA+TGG - chr7.4:76323804-76323823 MS.gene74105:CDS 35.0%
AATTACAATTTCATCGGGTG+AGG + chr7.4:76323781-76323800 None:intergenic 35.0%
ATCAACATTCTGTTGAGGTA+AGG + chr7.4:76324066-76324085 None:intergenic 35.0%
ATCTTTGTAATTTCCTCCCT+TGG + chr7.4:76323561-76323580 None:intergenic 35.0%
ATGATCTCGTGATTAACTAG+AGG + chr7.4:76324092-76324111 None:intergenic 35.0%
CGTGAACAATTACAAGAGTT+TGG - chr7.4:76323582-76323601 MS.gene74105:CDS 35.0%
GACTCTTCTCTTGATCATAT+GGG + chr7.4:76324157-76324176 None:intergenic 35.0%
TAGGCACTACTTCTTCATTA+GGG + chr7.4:76323956-76323975 None:intergenic 35.0%
TATAAGGAAAAATACGCACC+AGG + chr7.4:76324945-76324964 None:intergenic 35.0%
TCAACATTCTGTTGAGGTAA+GGG + chr7.4:76324065-76324084 None:intergenic 35.0%
TGACTCTTCTCTTGATCATA+TGG + chr7.4:76324158-76324177 None:intergenic 35.0%
TTACAAGAGTTTGGTCAAGT+TGG - chr7.4:76323591-76323610 MS.gene74105:CDS 35.0%
TTAGGCACTACTTCTTCATT+AGG + chr7.4:76323957-76323976 None:intergenic 35.0%
TTAGGGAAAGAGAAAAATGG+GGG + chr7.4:76323939-76323958 None:intergenic 35.0%
TTTGTGTGTTTGTCAGGATT+TGG - chr7.4:76324730-76324749 MS.gene74105:intron 35.0%
TTTGTTTGCTTCTAGACTTG+CGG + chr7.4:76323647-76323666 None:intergenic 35.0%
! AATTAAGTTGTGGTTCTTGC+TGG + chr7.4:76324211-76324230 None:intergenic 35.0%
! CACCCAAAATTTAAAGTTCC+AGG - chr7.4:76324606-76324625 MS.gene74105:intron 35.0%
! GATTCTCCAATGGTAATGAT+GGG - chr7.4:76323814-76323833 MS.gene74105:CDS 35.0%
! GCAACACCAAAATTAAGTTG+TGG + chr7.4:76324221-76324240 None:intergenic 35.0%
! GGTTGTAAATTGGTTTCAGT+CGG + chr7.4:76323909-76323928 None:intergenic 35.0%
! GTTGTAAATTGGTTTCAGTC+GGG + chr7.4:76323908-76323927 None:intergenic 35.0%
! TTGTAAATTGGTTTCAGTCG+GGG + chr7.4:76323907-76323926 None:intergenic 35.0%
!!! ATGCGAATTTGTTGTGGTTT+TGG + chr7.4:76323501-76323520 None:intergenic 35.0%
!!! TGATGTGGTTTTTTCCATGT+CGG - chr7.4:76322772-76322791 MS.gene74105:CDS 35.0%
!!! TGCGAATTTGTTGTGGTTTT+GGG + chr7.4:76323500-76323519 None:intergenic 35.0%
AAAGGATGCACGAACGTTAA+AGG + chr7.4:76324824-76324843 None:intergenic 40.0%
AAGGATGCACGAACGTTAAA+GGG + chr7.4:76324823-76324842 None:intergenic 40.0%
AGAAGATGACGATGATGAGT+TGG + chr7.4:76323742-76323761 None:intergenic 40.0%
CACGAGATCATCATGAACTA+TGG - chr7.4:76324101-76324120 MS.gene74105:intron 40.0%
CGAGAAACACAACAAAACTC+TGG - chr7.4:76323693-76323712 MS.gene74105:CDS 40.0%
GAAGATGACGATGATGAGTT+GGG + chr7.4:76323741-76323760 None:intergenic 40.0%
GGTACATCAACATTCTGTTG+AGG + chr7.4:76324071-76324090 None:intergenic 40.0%
GTAGACTTCTTGAACATGCT+AGG + chr7.4:76322555-76322574 None:intergenic 40.0%
GTGTTTCTCGTTTCTTGTTG+TGG + chr7.4:76323683-76323702 None:intergenic 40.0%
TCATCATCGTCATCTTCTTC+TGG - chr7.4:76323744-76323763 MS.gene74105:CDS 40.0%
TCGCATTTGCCTTAATCAGA+AGG + chr7.4:76324487-76324506 None:intergenic 40.0%
TGATCAAGAGAAGAGTCAAG+AGG - chr7.4:76324160-76324179 MS.gene74105:intron 40.0%
TGTTAATGGAAGCTCCTCTA+TGG - chr7.4:76324034-76324053 MS.gene74105:CDS 40.0%
TTCATCTCTCACATGCAACT+TGG + chr7.4:76324704-76324723 None:intergenic 40.0%
TTGTAATTTCCTCCCTTGGT+GGG + chr7.4:76323557-76323576 None:intergenic 40.0%
TTGTTTATATGACCCCGACA+TGG + chr7.4:76322789-76322808 None:intergenic 40.0%
TTTAACGTTCGTGCATCCTT+TGG - chr7.4:76324823-76324842 MS.gene74105:intron 40.0%
TTTGTAATTTCCTCCCTTGG+TGG + chr7.4:76323558-76323577 None:intergenic 40.0%
! AAAGAGAAAAATGGGGGTGT+GGG + chr7.4:76323933-76323952 None:intergenic 40.0%
! ATCATATGGGTCATCGATTG+AGG + chr7.4:76324144-76324163 None:intergenic 40.0%
! GGATTCTCCAATGGTAATGA+TGG - chr7.4:76323813-76323832 MS.gene74105:CDS 40.0%
! GTGATGCCAATGTCTTTTAC+TGG - chr7.4:76323613-76323632 MS.gene74105:CDS 40.0%
! TCCAGTTCTAACCGATGAAT+GGG - chr7.4:76324879-76324898 MS.gene74105:intron 40.0%
!! AAACCTATGTGGTGTTGTCA+TGG + chr7.4:76323982-76324001 None:intergenic 40.0%
!! TCCATCTGGTTCTCAAAAAG+CGG + chr7.4:76324520-76324539 None:intergenic 40.0%
!! TCGAAGCCATTTTCAACTCA+GGG - chr7.4:76323523-76323542 MS.gene74105:CDS 40.0%
!! TCGAGAATGCGAATTTGTTG+TGG + chr7.4:76323507-76323526 None:intergenic 40.0%
!!! ATGTGGTTTTTTCCATGTCG+GGG - chr7.4:76322774-76322793 MS.gene74105:CDS 40.0%
!!! GATGTGGTTTTTTCCATGTC+GGG - chr7.4:76322773-76322792 MS.gene74105:CDS 40.0%
AAGGGTAACACCCCATTCAT+CGG + chr7.4:76324893-76324912 None:intergenic 45.0%
AGGTAAGGGTTGAACCATAG+AGG + chr7.4:76324051-76324070 None:intergenic 45.0%
ATGCCATGACAACACCACAT+AGG - chr7.4:76323976-76323995 MS.gene74105:CDS 45.0%
ATGGAGAATGGAACAGCAAC+AGG + chr7.4:76324311-76324330 None:intergenic 45.0%
CACCATCCCATCATTACCAT+TGG + chr7.4:76323823-76323842 None:intergenic 45.0%
CAGTTAAGAGAGACGAGTTG+AGG + chr7.4:76322608-76322627 None:intergenic 45.0%
CCAGGTAATAAGTAGCACCA+TGG + chr7.4:76324927-76324946 None:intergenic 45.0%
CTCAACTCGTCTCTCTTAAC+TGG - chr7.4:76322606-76322625 MS.gene74105:intron 45.0%
GAAAGAGAAAAATGGGGGTG+TGG + chr7.4:76323934-76323953 None:intergenic 45.0%
GGTAATAAGTAGCACCATGG+TGG + chr7.4:76324924-76324943 None:intergenic 45.0%
TACTAAGGACGCCTCATTCA+TGG - chr7.4:76324786-76324805 MS.gene74105:intron 45.0%
TCCAACCAACGGAATTCTCA+AGG - chr7.4:76322582-76322601 MS.gene74105:intron 45.0%
TGGCTTCCTCGAACAAACAT+TGG - chr7.4:76322529-76322548 MS.gene74105:intron 45.0%
! CAATGGTAATGATGGGATGG+TGG - chr7.4:76323821-76323840 MS.gene74105:CDS 45.0%
! CACCATCCCTGAGTTGAAAA+TGG + chr7.4:76323532-76323551 None:intergenic 45.0%
! CCAGTTCTAACCGATGAATG+GGG - chr7.4:76324880-76324899 MS.gene74105:intron 45.0%
! CCTCATTCATGGTTGATGTG+GGG - chr7.4:76324797-76324816 MS.gene74105:intron 45.0%
! CTCCAATGGTAATGATGGGA+TGG - chr7.4:76323818-76323837 MS.gene74105:CDS 45.0%
! CTCCAGTTCTAACCGATGAA+TGG - chr7.4:76324878-76324897 MS.gene74105:intron 45.0%
! GCCTCATTCATGGTTGATGT+GGG - chr7.4:76324796-76324815 MS.gene74105:intron 45.0%
! TTTGGGTTCCATCTTGGCTT+TGG + chr7.4:76323483-76323502 None:intergenic 45.0%
!! AGCCATTTTCAACTCAGGGA+TGG - chr7.4:76323527-76323546 MS.gene74105:CDS 45.0%
!! CCATGGTGCTACTTATTACC+TGG - chr7.4:76324924-76324943 MS.gene74105:intron 45.0%
!! CTCGAAGCCATTTTCAACTC+AGG - chr7.4:76323522-76323541 MS.gene74105:CDS 45.0%
!! TGTGGTGTTGTCATGGCATT+AGG + chr7.4:76323975-76323994 None:intergenic 45.0%
!! TTCCATCTTGGCTTTGGTTC+TGG + chr7.4:76323477-76323496 None:intergenic 45.0%
!!! TGTGGTTTTGGGTTCCATCT+TGG + chr7.4:76323489-76323508 None:intergenic 45.0%
!!! ATATATTTGTAATTTTTTTA+AGG + chr7.4:76324583-76324602 None:intergenic 5.0%
!!! TATATTTGTAATTTTTTTAA+GGG + chr7.4:76324582-76324601 None:intergenic 5.0%
ATTTGGCGTGGAAGATGGAG+CGG - chr7.4:76324747-76324766 MS.gene74105:intron 50.0%
CCCCACATCAACCATGAATG+AGG + chr7.4:76324800-76324819 None:intergenic 50.0%
CTACCAATGCGTCCAACCAA+CGG - chr7.4:76322571-76322590 MS.gene74105:intron 50.0%
CTCCAGAACCAAAGCCAAGA+TGG - chr7.4:76323472-76323491 MS.gene74105:CDS 50.0%
GAGAACTGCTCGATCTCCAA+AGG + chr7.4:76324842-76324861 None:intergenic 50.0%
GCAGTTCTCTTTGACTCCTC+TGG - chr7.4:76324853-76324872 MS.gene74105:intron 50.0%
GCCTTGAGAATTCCGTTGGT+TGG + chr7.4:76322586-76322605 None:intergenic 50.0%
GCTAGGCCAATGTTTGTTCG+AGG + chr7.4:76322538-76322557 None:intergenic 50.0%
GGGTGTGGGTGGTTGTAAAT+TGG + chr7.4:76323919-76323938 None:intergenic 50.0%
GTGTTTGTCAGGATTTGGCG+TGG - chr7.4:76324735-76324754 MS.gene74105:intron 50.0%
TCAGGATTTGGCGTGGAAGA+TGG - chr7.4:76324742-76324761 MS.gene74105:intron 50.0%
TGAGGCCTTGAGAATTCCGT+TGG + chr7.4:76322590-76322609 None:intergenic 50.0%
TTCTAATTCCCCCGCAGTCT+CGG - chr7.4:76323848-76323867 MS.gene74105:CDS 50.0%
! ACCATGGTGGAGCGATTCAA+GGG + chr7.4:76324911-76324930 None:intergenic 50.0%
! ATTCCGTTGGTTGGACGCAT+TGG + chr7.4:76322577-76322596 None:intergenic 50.0%
! CCCCATTCATCGGTTAGAAC+TGG + chr7.4:76324883-76324902 None:intergenic 50.0%
! CGCCTCATTCATGGTTGATG+TGG - chr7.4:76324795-76324814 MS.gene74105:intron 50.0%
! CTGGTTCTCAAAAAGCGGCT+TGG + chr7.4:76324515-76324534 None:intergenic 50.0%
! GATGACGATGATGAGTTGGG+TGG + chr7.4:76323738-76323757 None:intergenic 50.0%
! GGTTAGAACTGGAGTACCAG+AGG + chr7.4:76324872-76324891 None:intergenic 50.0%
!!! GCCGCTTTTTGAGAACCAGA+TGG - chr7.4:76324516-76324535 MS.gene74105:intron 50.0%
!!! GTTTTGGTTCACCGAGACTG+CGG + chr7.4:76323862-76323881 None:intergenic 50.0%
!!! TTTTGGTTCACCGAGACTGC+GGG + chr7.4:76323861-76323880 None:intergenic 50.0%
AACAGCAACAGGTGCACCGA+TGG + chr7.4:76324300-76324319 None:intergenic 55.0%
ACCCTTGAATCGCTCCACCA+TGG - chr7.4:76324907-76324926 MS.gene74105:intron 55.0%
AGGGATGGTGAACCCACCAA+GGG - chr7.4:76323542-76323561 MS.gene74105:CDS 55.0%
CCTCTTCCTCCCACTACCAT+CGG - chr7.4:76324281-76324300 MS.gene74105:intron 55.0%
! AACAGGTGCACCGATGGTAG+TGG + chr7.4:76324294-76324313 None:intergenic 55.0%
! ACAGGTGCACCGATGGTAGT+GGG + chr7.4:76324293-76324312 None:intergenic 55.0%
! CACCATGGTGGAGCGATTCA+AGG + chr7.4:76324912-76324931 None:intergenic 55.0%
! GAGAAAAATGGGGGTGTGGG+TGG + chr7.4:76323930-76323949 None:intergenic 55.0%
! TTTGGTTCACCGAGACTGCG+GGG + chr7.4:76323860-76323879 None:intergenic 55.0%
CAGGGATGGTGAACCCACCA+AGG - chr7.4:76323541-76323560 MS.gene74105:CDS 60.0%
GATGGTGAACCCACCAAGGG+AGG - chr7.4:76323545-76323564 MS.gene74105:CDS 60.0%
TTGGTTCACCGAGACTGCGG+GGG + chr7.4:76323859-76323878 None:intergenic 60.0%
!! CCGATGGTAGTGGGAGGAAG+AGG + chr7.4:76324284-76324303 None:intergenic 60.0%
TGCGCATTGCACGCGTCCGT+GGG + chr7.4:76324653-76324672 None:intergenic 65.0%
TTGCGCATTGCACGCGTCCG+TGG + chr7.4:76324654-76324673 None:intergenic 65.0%
!! GGTGCACCGATGGTAGTGGG+AGG + chr7.4:76324290-76324309 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 76322528 76325025 76322528 ID=MS.gene74105
chr7.4 mRNA 76322528 76325025 76322528 ID=MS.gene74105.t1;Parent=MS.gene74105
chr7.4 exon 76324926 76325025 76324926 ID=MS.gene74105.t1.exon1;Parent=MS.gene74105.t1
chr7.4 CDS 76324926 76325025 76324926 ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1
chr7.4 exon 76323203 76324102 76323203 ID=MS.gene74105.t1.exon2;Parent=MS.gene74105.t1
chr7.4 CDS 76323203 76324102 76323203 ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1
chr7.4 exon 76322608 76322807 76322608 ID=MS.gene74105.t1.exon3;Parent=MS.gene74105.t1
chr7.4 CDS 76322608 76322807 76322608 ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1
chr7.4 exon 76322528 76322539 76322528 ID=MS.gene74105.t1.exon4;Parent=MS.gene74105.t1
chr7.4 CDS 76322528 76322539 76322528 ID=cds.MS.gene74105.t1;Parent=MS.gene74105.t1
Gene Sequence

>MS.gene74105

ATGGCTTCCTCGAACAAACATTGGCCTAGCATGTTCAAGAAGTCTACCAATGCGTCCAACCAACGGAATTCTCAAGGCCTCAACTCGTCTCTCTTAACTGGTTTTGAAACAACTCCCTCTACTTATTATTATTATTTAGTCAAACTCAATCCTATGTGTTAGATCTAATCAAAATCTGTATGTGTGTAAGAAAGAACCAAATCAATGACTATAAACTCAAAATTTCAATCAAAACGACTTAAATTGATGTGGTTTTTTCCATGTCGGGGTCATATAAACAAATCACAAGTATTATAATTTCGAGTGTATGTCCCCAACATAGAAAAAACCTAAACGAATCGATTTAAAATTTGAAAGTTTAGATTTTTAGGGCTAAAATTTGATCTATACTCGGATATCAATTTGATGTTATTTAAAATTTATCACTTGAGATCCGTTCGAGCAATTATATTTTCATATAATTGATTTTATTTTTTACAATATTTGCAGCGTTTTATTAAAGAAAAAAAATTGTGTTTAAATATATTTTTGATAATTATATACATAAGTTTTTCTATTGTAGTTTATGTCATTGTTTTATTGTATACACTACGGATTATAAACCAAAGCAAACAGATGAAGATAATTTATCCAATTGTTTTATAGAAATATTATAATACTCCATAGGTCATATTGTAGTTTACAAATTTTTCAGTTTAGATATAAACTACAAAAAAATTATGATAGTTCATGTTGTCATTGTTTTAATAATTATCTGATTGTTTTATCTGATGTTTAATAAATTTTTCTATTGTAGTTTTTGTCATTGTTTTATAGAAGTATCATAATACTCGGTAGTTCATACAATATAATGAACATTTTTAGTAAATTTTAGAATTTGTAAACTTAGCATGTTTGATTGGCTTTTAACAAATATTGTTTAGGTGGAGATGGTGAAGAGAGAACTCCAGAACCAAAGCCAAGATGGAACCCAAAACCACAACAAATTCGCATTCTCGAAGCCATTTTCAACTCAGGGATGGTGAACCCACCAAGGGAGGAAATTACAAAGATACGTGAACAATTACAAGAGTTTGGTCAAGTTGGTGATGCCAATGTCTTTTACTGGTTTCAAAACCGCAAGTCTAGAAGCAAACAAAAGAAAAGATTCATCCACAACAAGAAACGAGAAACACAACAAAACTCTGGTCATCAAACACTCACATCACCACCCAACTCATCATCGTCATCTTCTTCTGGTCATCAAAAAGCCTCACCCGATGAAATTGTAATTTCGAACAATATCGGATTCTCCAATGGTAATGATGGGATGGTGGTGTTTTCTAATTCCCCCGCAGTCTCGGTGAACCAAAACCAAGTTGATGCTTATTTTCACACCCCGACTGAAACCAATTTACAACCACCCACACCCCCATTTTTCTCTTTCCCTAATGAAGAAGTAGTGCCTAATGCCATGACAACACCACATAGGTTTAATCACTTATCTGGTTTCATGAACTATGGAAGTGTTAATGGAAGCTCCTCTATGGTTCAACCCTTACCTCAACAGAATGTTGATGTACCTCTAGTTAATCACGAGATCATCATGAACTATGGAAGTAAAAATGGAATCTCCTCAATCGATGACCCATATGATCAAGAGAAGAGTCAAGAGGAAGCAATGAATATGATTCACATGTACCAGCAAGAACCACAACTTAATTTTGGTGTTGCTACAACATCAAGTAATGATGATGAGTCAGTTGATCTTGCTCCTCTTCCTCCCACTACCATCGGTGCACCTGTTGCTGTTCCATTCTCCATTGTTAATCATCAACGTCAAGGTAATCAATATCAAGTTTTACAAAACTAATGATTGAATTCGAGTCGTTAATAGTTCTAATTAAAGATGAACTGTTTAAAACAAACTTAGTTTGAATTTTAGTTGGAACAATTTTTTCTATTACACTTTACTTACCTTCTGATTAAGGCAAATGCGAAATTACCAAGCCGCTTTTTGAGAACCAGATGGATAAAACAACAAAAATATATCAATTTTTACATATATTTCTCCCTTAAAAAAATTACAAATATATATGCACCCAAAATTTAAAGTTCCAGGTATGATTTCGTTTTATTATATCCCACGGACGCGTGCAATGCGCAAAACTTCATTTAGTTAAAGTCTGTGTTTCCAAGTTGCATGTGAGAGATGAATTTTCTTTTGTGTGTTTGTCAGGATTTGGCGTGGAAGATGGAGCGGAAAAATGTACTGTGATTACTAAGGACGCCTCATTCATGGTTGATGTGGGGCCCTTTAACGTTCGTGCATCCTTTGGAGATCGAGCAGTTCTCTTTGACTCCTCTGGTACTCCAGTTCTAACCGATGAATGGGGTGTTACCCTTGAATCGCTCCACCATGGTGCTACTTATTACCTGGTGCGTATTTTTCCTTATAACATTTGCTTTGTTTATTAATTTCTTTCACCAGTGTATATGATTATAAGGGAAAGCCTTGA

Protein sequence

>MS.gene74105.t1

MASSNKHWPSMFKKSTNASNQRNSQGLNSSLLTGGDGEERTPEPKPRWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQKKRFIHNKKRETQQNSGHQTLTSPPNSSSSSSSGHQKASPDEIVISNNIGFSNGNDGMVVFSNSPAVSVNQNQVDAYFHTPTETNLQPPTPPFFSFPNEEVVPNAMTTPHRFNHLSGFMNYGSVNGSSSMVQPLPQQNVDVPLVNHEIIMNYGSKNGISSIDDPYDQEKSQEEAMNMIHMYQQEPQLNFGVATTSSNDDESVDLAPLPPTTIGAPVAVPFSIVNHQRQGFGVEDGAEKCTVITKDASFMVDVGPFNVRASFGDRAVLFDSSGTPVLTDEWGVTLESLHHGATYYLGKP