AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74305

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74305.t1 MTR_3g028520 94.404 411 14 2 1 407 1 406 0.0 793
MS.gene74305.t1 MTR_3g027650 94.404 411 14 2 1 407 1 406 0.0 793
MS.gene74305.t1 MTR_3g027650 94.344 389 13 2 1 385 1 384 0.0 744
MS.gene74305.t1 MTR_3g027650 94.247 365 12 2 1 361 1 360 0.0 696
MS.gene74305.t1 MTR_8g036235 51.358 405 148 10 10 397 18 390 1.66e-107 322
MS.gene74305.t1 MTR_8g036235 49.593 369 137 10 10 361 18 354 8.11e-87 270
MS.gene74305.t1 MTR_1g052470 36.957 414 185 17 14 395 1 370 1.06e-52 180
MS.gene74305.t1 MTR_2g098310 37.204 422 213 18 18 401 3 410 2.93e-52 180
MS.gene74305.t1 MTR_4g065870 33.860 443 215 16 14 401 13 432 3.11e-48 170
MS.gene74305.t1 MTR_2g098310 37.073 410 202 19 18 387 3 396 1.69e-46 164
MS.gene74305.t1 MTR_2g098310 34.354 457 213 19 18 401 3 445 7.54e-45 161
MS.gene74305.t1 MTR_4g065870 33.568 426 206 15 14 384 13 416 8.82e-43 155
MS.gene74305.t1 MTR_7g092540 37.450 251 113 6 162 395 92 315 1.63e-40 146
MS.gene74305.t1 MTR_7g092540 38.017 242 106 6 162 386 92 306 5.89e-38 139
MS.gene74305.t1 MTR_4g033295 67.033 91 28 1 309 399 106 194 2.69e-34 126
MS.gene74305.t1 MTR_1g116790 60.577 104 40 1 293 396 236 338 2.62e-31 122
MS.gene74305.t1 MTR_4g033295 71.795 78 20 1 309 386 106 181 4.28e-31 117
MS.gene74305.t1 MTR_2g098310 34.555 382 198 18 18 361 3 370 1.43e-30 121
MS.gene74305.t1 MTR_4g065870 30.769 403 202 15 14 361 13 393 2.13e-28 115
MS.gene74305.t1 MTR_1g052470 33.240 358 165 16 14 340 1 315 1.74e-25 105
MS.gene74305.t1 MTR_2g098310 32.964 361 190 18 18 340 3 349 1.22e-20 92.8
MS.gene74305.t1 MTR_4g033295 79.245 53 9 1 309 361 106 156 3.38e-20 87.8
MS.gene74305.t1 MTR_6g052280 51.190 84 33 2 286 361 9 92 5.20e-17 77.4
MS.gene74305.t1 MTR_4g131160 54.545 66 29 1 322 387 198 262 5.71e-15 76.6
MS.gene74305.t1 MTR_4g131160 54.545 66 29 1 322 387 195 259 5.78e-15 76.3
MS.gene74305.t1 MTR_3g498825 53.846 65 30 0 323 387 147 211 4.46e-14 73.2
MS.gene74305.t1 MTR_3g116770 45.946 74 40 0 314 387 182 255 3.94e-13 70.9
MS.gene74305.t1 MTR_3g116770 45.946 74 40 0 314 387 182 255 3.96e-13 70.9
MS.gene74305.t1 MTR_7g053410 50.769 65 32 0 323 387 317 381 4.31e-13 71.2
MS.gene74305.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 4.37e-13 70.9
MS.gene74305.t1 MTR_1g080890 53.030 66 30 1 322 387 192 256 4.45e-13 70.5
MS.gene74305.t1 MTR_8g012290 50.769 65 32 0 323 387 291 355 4.50e-13 70.9
MS.gene74305.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 4.56e-13 70.9
MS.gene74305.t1 MTR_7g053410 50.769 65 32 0 323 387 317 381 4.61e-13 71.2
MS.gene74305.t1 MTR_8g012290 50.769 65 32 0 323 387 291 355 4.68e-13 70.9
MS.gene74305.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 4.99e-13 70.5
MS.gene74305.t1 MTR_1g017350 47.761 67 35 0 321 387 258 324 5.08e-13 70.5
MS.gene74305.t1 MTR_8g065740 50.769 65 32 0 323 387 305 369 5.98e-13 70.5
MS.gene74305.t1 MTR_4g070320 47.368 76 38 1 314 387 132 207 1.01e-12 69.3
MS.gene74305.t1 MTR_5g048860 43.011 93 48 1 300 387 337 429 2.37e-12 68.9
MS.gene74305.t1 MTR_8g099880 49.231 65 33 0 323 387 145 209 4.22e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74305.t1 AT2G42280 34.729 406 198 14 14 401 1 357 1.62e-48 169
MS.gene74305.t1 AT1G51140 32.990 388 223 12 21 397 17 378 2.45e-43 155
MS.gene74305.t1 AT2G42280 33.846 390 191 14 14 385 1 341 1.32e-41 150
MS.gene74305.t1 AT2G43140 50.336 149 59 4 255 401 77 212 1.61e-38 138
MS.gene74305.t1 AT1G05805 34.694 392 185 17 28 400 21 360 7.80e-38 140
MS.gene74305.t1 AT2G43140 50.676 148 60 4 255 401 174 309 1.23e-37 139
MS.gene74305.t1 AT1G35460 67.857 84 27 0 318 401 176 259 1.21e-33 126
MS.gene74305.t1 AT4G09180 50.000 140 58 3 264 401 133 262 1.88e-32 123
MS.gene74305.t1 AT2G42280 28.986 345 178 14 14 340 1 296 4.86e-18 84.3
MS.gene74305.t1 AT1G35460 76.596 47 11 0 318 364 176 222 5.46e-17 80.1
MS.gene74305.t1 AT2G24260 56.061 66 28 1 322 387 34 98 1.64e-15 76.3
MS.gene74305.t1 AT2G24260 56.061 66 28 1 322 387 137 201 5.62e-15 76.3
MS.gene74305.t1 AT5G58010 53.030 66 30 1 322 387 98 162 7.53e-15 75.1
MS.gene74305.t1 AT4G30980 54.545 66 29 1 322 387 129 193 1.23e-14 74.7
MS.gene74305.t1 AT4G30980 54.545 66 29 1 322 387 177 241 1.29e-14 75.1
MS.gene74305.t1 AT4G34530 47.297 74 39 0 314 387 163 236 7.50e-14 72.8
MS.gene74305.t1 AT5G50915 50.769 65 32 0 323 387 136 200 2.55e-13 70.5
MS.gene74305.t1 AT5G50915 50.769 65 32 0 323 387 136 200 2.55e-13 70.5
MS.gene74305.t1 AT5G50915 50.769 65 32 0 323 387 136 200 3.25e-13 69.7
MS.gene74305.t1 AT5G50915 50.769 65 32 0 323 387 136 200 3.25e-13 69.7
MS.gene74305.t1 AT1G25330 46.269 67 36 0 321 387 102 168 4.81e-13 68.6
MS.gene74305.t1 AT1G68920 50.769 65 32 0 323 387 302 366 7.01e-13 70.5
MS.gene74305.t1 AT1G68920 50.769 65 32 0 323 387 303 367 7.21e-13 70.5
MS.gene74305.t1 AT1G68920 50.769 65 32 0 323 387 303 367 7.21e-13 70.5
MS.gene74305.t1 AT1G68920 50.769 65 32 0 323 387 303 367 7.21e-13 70.5
MS.gene74305.t1 AT3G07340 50.769 65 32 0 323 387 258 322 1.14e-12 69.7
MS.gene74305.t1 AT3G07340 50.769 65 32 0 323 387 258 322 1.15e-12 69.7
MS.gene74305.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.47e-12 68.9
MS.gene74305.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.47e-12 68.9
MS.gene74305.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.47e-12 68.9
MS.gene74305.t1 AT1G26260 50.769 65 32 0 323 387 223 287 1.47e-12 68.9
MS.gene74305.t1 AT1G26260 50.769 65 32 0 323 387 201 265 1.49e-12 68.9
MS.gene74305.t1 AT1G26260 50.769 65 32 0 323 387 172 236 1.66e-12 68.6
MS.gene74305.t1 AT1G10120 41.379 87 43 1 301 387 192 270 2.51e-12 68.2
MS.gene74305.t1 AT1G10120 41.379 87 43 1 301 387 192 270 2.51e-12 68.2
MS.gene74305.t1 AT4G36540 42.683 82 47 0 306 387 124 205 2.94e-12 67.4
MS.gene74305.t1 AT4G36540 42.683 82 47 0 306 387 124 205 3.19e-12 67.4
MS.gene74305.t1 AT5G48560 49.231 65 33 0 323 387 301 365 3.59e-12 68.2
MS.gene74305.t1 AT5G48560 49.231 65 33 0 323 387 301 365 3.62e-12 68.2
MS.gene74305.t1 AT1G73830 47.692 65 34 0 323 387 147 211 1.06e-11 65.1
MS.gene74305.t1 AT1G73830 47.692 65 34 0 323 387 147 211 1.11e-11 65.1
MS.gene74305.t1 AT2G18300 46.154 65 35 0 323 387 185 249 5.61e-11 63.9
MS.gene74305.t1 AT2G18300 46.154 65 35 0 323 387 185 249 5.84e-11 63.9
MS.gene74305.t1 AT2G18300 46.154 65 35 0 323 387 185 249 6.81e-11 63.9

Find 57 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAATACCTTATCTGATTT+TGG 0.030579 3.1:+19691870 None:intergenic
CTAGCTTCACCAATGAATTT+TGG 0.135326 3.1:-19692297 MS.gene74305:CDS
CTTGATTCTGTCACTAATTC+TGG 0.137372 3.1:+19691911 None:intergenic
ACCCTCTCTGCAATGCTTCT+TGG 0.180344 3.1:+19692043 None:intergenic
GACTCTCAAGAAGCAGATTT+TGG 0.193647 3.1:-19692202 MS.gene74305:CDS
GTACCTGAACTTGTTCTTGT+AGG 0.262088 3.1:+19691484 None:intergenic
TACTTGAAGAATCCATTTCT+TGG 0.275479 3.1:+19693820 None:intergenic
AAATCAGCTACAAGGTTTAC+AGG 0.285709 3.1:+19691301 None:intergenic
CAGAATGGTAATTATTCTTA+TGG 0.286535 3.1:-19693519 MS.gene74305:CDS
CATTCAAAACAACAAAATTC+TGG 0.289744 3.1:-19693792 MS.gene74305:CDS
GATTCTAATCAATCTAAAAT+TGG 0.295488 3.1:-19693405 MS.gene74305:CDS
ATGCCACAAATAGCTGAAAA+TGG 0.316152 3.1:-19692397 MS.gene74305:CDS
CACGGCAGATATGTTGGATT+TGG 0.326350 3.1:-19691526 MS.gene74305:CDS
TTTGTAGTTTGGTCACAATT+TGG 0.335830 3.1:+19692358 None:intergenic
ACAAACCTAGTAAATGAAAA+TGG 0.344072 3.1:-19692340 MS.gene74305:CDS
GGAATTGCTCCAATCTTATT+AGG 0.352113 3.1:-19693377 MS.gene74305:CDS
TTTGAGCGTTGTTGTCGATT+AGG 0.359368 3.1:+19693724 None:intergenic
CATTTACTAGGTTTGTAGTT+TGG 0.361798 3.1:+19692347 None:intergenic
TCCATTTCTGAACTTGTTGA+TGG 0.362031 3.1:+19693657 None:intergenic
GAAGCTAGGTATGTGACTTT+TGG 0.365896 3.1:+19692312 None:intergenic
GCAGATACTCACAGATTGTA+AGG 0.393985 3.1:-19691357 MS.gene74305:intron
TGTAAAATTCGAGCGAAAAG+AGG 0.401428 3.1:-19692079 MS.gene74305:CDS
TCCATCAACAAGTTCAGAAA+TGG 0.409930 3.1:-19693658 MS.gene74305:CDS
AAGCCTGTGAAGCAAGAAAT+AGG 0.413405 3.1:-19693558 MS.gene74305:CDS
AGAATTGTTCCATCCATTGT+TGG 0.420159 3.1:+19693608 None:intergenic
AGAATTGTCCCAAAATTCAT+TGG 0.420165 3.1:+19692288 None:intergenic
TTCTACTAAGATGACATCTA+TGG 0.437415 3.1:-19692134 MS.gene74305:CDS
ATCAATCTAAAATTGGTGTT+AGG 0.437757 3.1:-19693398 MS.gene74305:CDS
TCACCTATTTCTTGCTTCAC+AGG 0.439004 3.1:+19693555 None:intergenic
GCTAAGAAGAAACCAAGAAA+TGG 0.440153 3.1:-19693832 MS.gene74305:CDS
CAGAACCATTTGAAAAGCCT+TGG 0.447461 3.1:+19693478 None:intergenic
AAAGCCAATGGCATCTCAAA+TGG 0.469024 3.1:-19692463 MS.gene74305:CDS
GTACACTTAACTTCTCATCT+AGG 0.475567 3.1:-19692441 MS.gene74305:CDS
TCCAAGAAGCATTGCAGAGA+GGG 0.485454 3.1:-19692044 MS.gene74305:intron
AACAAGCACGGCAGATATGT+TGG 0.496382 3.1:-19691532 MS.gene74305:CDS
GGCCATCTACTAGCTTGAAA+AGG 0.500559 3.1:-19692420 MS.gene74305:CDS
AGACCTACAAGAACAAGTTC+AGG 0.503261 3.1:-19691487 MS.gene74305:intron
AGGTTTGTAAACAATGAGGT+TGG 0.522294 3.1:+19693744 None:intergenic
TGTACCATTTGAGATGCCAT+TGG 0.531059 3.1:+19692459 None:intergenic
TGATATCATCCAACAATGGA+TGG 0.538943 3.1:-19693617 MS.gene74305:CDS
GTAAAATTCGAGCGAAAAGA+GGG 0.539222 3.1:-19692078 MS.gene74305:CDS
AATGGTAATTATTCTTATGG+TGG 0.553621 3.1:-19693516 MS.gene74305:CDS
CAAAATTCATTGGTGAAGCT+AGG 0.555453 3.1:+19692298 None:intergenic
AAAGGATTAAATCAGCTACA+AGG 0.569777 3.1:+19691293 None:intergenic
GTAGAAAGCTTTAAAGCCAA+TGG 0.573198 3.1:-19692475 MS.gene74305:CDS
GAATCTGTTGCACAACAGAA+TGG 0.578310 3.1:-19693534 MS.gene74305:CDS
AATCAGCTACAAGGTTTACA+GGG 0.586955 3.1:+19691302 None:intergenic
TGATATCAACTTGGATAACA+TGG 0.587600 3.1:+19693632 None:intergenic
ATTGTTGGATGATATCAACT+TGG 0.590635 3.1:+19693623 None:intergenic
GGATCTGAGTTGATTTACCA+AGG 0.594347 3.1:-19693495 MS.gene74305:CDS
GACAGAATCAAGAAACTGCA+AGG 0.604322 3.1:-19691900 MS.gene74305:CDS
GATTAGGTTTGTAAACAATG+AGG 0.615343 3.1:+19693740 None:intergenic
TGCAACATTGACATTGAGAG+AGG 0.628805 3.1:-19692497 MS.gene74305:CDS
AAAATTCTGGACTATTGATG+AGG 0.635672 3.1:-19693779 MS.gene74305:CDS
GTCATCTTAGTAGAAGAACT+AGG 0.642089 3.1:+19692142 None:intergenic
AAGTTGATATCATCCAACAA+TGG 0.670047 3.1:-19693621 MS.gene74305:CDS
ATCCAAGAAGCATTGCAGAG+AGG 0.687513 3.1:-19692045 MS.gene74305:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTAGTTTATATACATTT+CGG - chr3.1:19693574-19693593 MS.gene74305:CDS 15.0%
!!! GTTTATTCTTTTCATTTTTA+GGG + chr3.1:19693718-19693737 None:intergenic 15.0%
!!! TGTTTATTCTTTTCATTTTT+AGG + chr3.1:19693719-19693738 None:intergenic 15.0%
!! AGATAAAACAAATGAACAAT+TGG - chr3.1:19692243-19692262 MS.gene74305:CDS 20.0%
!! TATGTTAATCTGAAAATTTC+AGG - chr3.1:19693213-19693232 MS.gene74305:intron 20.0%
!!! AAAATACCTTATCTGATTTT+GGG + chr3.1:19693288-19693307 None:intergenic 20.0%
!!! ATAATGTTTTCTACTTCAAA+TGG - chr3.1:19692927-19692946 MS.gene74305:intron 20.0%
!!! ATTGTTCATTTGTTTTATCT+TGG + chr3.1:19692243-19692262 None:intergenic 20.0%
!!! CTTTTTCCTCTTAATAATTA+GGG - chr3.1:19691894-19691913 MS.gene74305:CDS 20.0%
!!! GATTCTAATCAATCTAAAAT+TGG - chr3.1:19691751-19691770 MS.gene74305:intron 20.0%
!!! TAAAATACCTTATCTGATTT+TGG + chr3.1:19693289-19693308 None:intergenic 20.0%
!!! TGAATACTTTTATGAATTGA+AGG - chr3.1:19692633-19692652 MS.gene74305:intron 20.0%
!!! TTAGACATTATAGATTTTGA+TGG + chr3.1:19693759-19693778 None:intergenic 20.0%
!!! TTTAAAGTTATTACTGATGT+CGG + chr3.1:19693467-19693486 None:intergenic 20.0%
! AATGGTAATTATTCTTATGG+TGG - chr3.1:19691640-19691659 MS.gene74305:intron 25.0%
! ACAAACCTAGTAAATGAAAA+TGG - chr3.1:19692816-19692835 MS.gene74305:intron 25.0%
! ACATAGGCTTAATAATAGTA+TGG + chr3.1:19693176-19693195 None:intergenic 25.0%
! AGCTTATAAAAACAGCTTAT+AGG - chr3.1:19692049-19692068 MS.gene74305:CDS 25.0%
! ATGAAAAATATAAGTGCAGA+AGG - chr3.1:19692339-19692358 MS.gene74305:CDS 25.0%
! CAGAATGGTAATTATTCTTA+TGG - chr3.1:19691637-19691656 MS.gene74305:intron 25.0%
! CATTCAAAACAACAAAATTC+TGG - chr3.1:19691364-19691383 MS.gene74305:intron 25.0%
! TCAAAATAAGTCAAACAGTT+TGG + chr3.1:19692608-19692627 None:intergenic 25.0%
! TTAACATATAAAGTACGACA+TGG - chr3.1:19692425-19692444 MS.gene74305:CDS 25.0%
!! ATCAATCTAAAATTGGTGTT+AGG - chr3.1:19691758-19691777 MS.gene74305:intron 25.0%
!! GAGAATTTTCTTGAAATTCA+AGG - chr3.1:19693044-19693063 MS.gene74305:intron 25.0%
!! GAGTTTTTCTCTAATGAAAA+TGG - chr3.1:19691820-19691839 MS.gene74305:intron 25.0%
!!! GCTTTTTCCTCTTAATAATT+AGG - chr3.1:19691893-19691912 MS.gene74305:CDS 25.0%
AAAATTCTGGACTATTGATG+AGG - chr3.1:19691377-19691396 MS.gene74305:intron 30.0%
AACAGACCCTAATTATTAAG+AGG + chr3.1:19691903-19691922 None:intergenic 30.0%
AGAATTGTCCCAAAATTCAT+TGG + chr3.1:19692871-19692890 None:intergenic 30.0%
AGCTTATTGAGCTTATCTAT+TGG - chr3.1:19691929-19691948 MS.gene74305:intron 30.0%
AGCTTGATTCATCATTAGTA+AGG - chr3.1:19692295-19692314 MS.gene74305:CDS 30.0%
ATATAAAGTACGACATGGAT+AGG - chr3.1:19692430-19692449 MS.gene74305:CDS 30.0%
ATATAACTCAATATCCGAAC+AGG - chr3.1:19692148-19692167 MS.gene74305:CDS 30.0%
ATGAAACTGTTGAATCACAT+AGG + chr3.1:19693192-19693211 None:intergenic 30.0%
ATTGTTGGATGATATCAACT+TGG + chr3.1:19691536-19691555 None:intergenic 30.0%
CATTTACTAGGTTTGTAGTT+TGG + chr3.1:19692812-19692831 None:intergenic 30.0%
CTACTTGGATCAACAAATAT+TGG + chr3.1:19692270-19692289 None:intergenic 30.0%
CTTAATAATTAGGGTCTGTT+TGG - chr3.1:19691903-19691922 MS.gene74305:CDS 30.0%
GATTAGGTTTGTAAACAATG+AGG + chr3.1:19691419-19691438 None:intergenic 30.0%
TACTTGAAGAATCCATTTCT+TGG + chr3.1:19691339-19691358 None:intergenic 30.0%
TATAACTCAATATCCGAACA+GGG - chr3.1:19692149-19692168 MS.gene74305:CDS 30.0%
TGATATCAACTTGGATAACA+TGG + chr3.1:19691527-19691546 None:intergenic 30.0%
TTCATCATTAGTAAGGTCTT+AGG - chr3.1:19692302-19692321 MS.gene74305:CDS 30.0%
TTCTACTAAGATGACATCTA+TGG - chr3.1:19693022-19693041 MS.gene74305:intron 30.0%
TTTGTAGTTTGGTCACAATT+TGG + chr3.1:19692801-19692820 None:intergenic 30.0%
! AATGGTTTTTATGGCTCTTT+TGG - chr3.1:19691703-19691722 MS.gene74305:intron 30.0%
! ACTCTTTTGCCTAATAAGAT+TGG + chr3.1:19691791-19691810 None:intergenic 30.0%
! AGCTACCATTTTCATTTACT+AGG + chr3.1:19692824-19692843 None:intergenic 30.0%
! ATGTCTTCAATCTAAAGTGT+CGG - chr3.1:19693548-19693567 MS.gene74305:CDS 30.0%
! ATTCCATTTTCAGCTATTTG+TGG + chr3.1:19692765-19692784 None:intergenic 30.0%
! ATTTACCAAGGCTTTTCAAA+TGG - chr3.1:19691673-19691692 MS.gene74305:intron 30.0%
! GTTTTCTACTTCAAATGGTT+TGG - chr3.1:19692932-19692951 MS.gene74305:intron 30.0%
! TAGCTTCACCAATGAATTTT+GGG - chr3.1:19692860-19692879 MS.gene74305:intron 30.0%
! TCTTTTCCCAAAATCAGATA+AGG - chr3.1:19693279-19693298 MS.gene74305:intron 30.0%
!! AAGTTGATATCATCCAACAA+TGG - chr3.1:19691535-19691554 MS.gene74305:CDS 30.0%
!! CTTTTGAGAAAGTTAAAGTC+TGG + chr3.1:19693377-19693396 None:intergenic 30.0%
!!! GATTTTGGCTATCAAAATCT+TGG - chr3.1:19692969-19692988 MS.gene74305:intron 30.0%
!!! GCTGTTTTTATAAGCTATCT+AGG + chr3.1:19692045-19692064 None:intergenic 30.0%
!!! TCTTTTCATTTTTAGGGCAA+AGG + chr3.1:19693712-19693731 None:intergenic 30.0%
AATCTGTGAGTATCTGCAAA+AGG + chr3.1:19693796-19693815 None:intergenic 35.0%
AGAATTGTTCCATCCATTGT+TGG + chr3.1:19691551-19691570 None:intergenic 35.0%
AGGTTTGTAAACAATGAGGT+TGG + chr3.1:19691415-19691434 None:intergenic 35.0%
AGTAACGTAGTCACAGATAT+TGG - chr3.1:19693427-19693446 MS.gene74305:CDS 35.0%
ATGCCACAAATAGCTGAAAA+TGG - chr3.1:19692759-19692778 MS.gene74305:intron 35.0%
ATTAGAGAAAAACTCAGCAG+GGG + chr3.1:19691815-19691834 None:intergenic 35.0%
CAAAATTCATTGGTGAAGCT+AGG + chr3.1:19692861-19692880 None:intergenic 35.0%
CATTAGAGAAAAACTCAGCA+GGG + chr3.1:19691816-19691835 None:intergenic 35.0%
CTTGATTCTGTCACTAATTC+TGG + chr3.1:19693248-19693267 None:intergenic 35.0%
CTTTAGATTGAAGACATGAC+CGG + chr3.1:19693545-19693564 None:intergenic 35.0%
GAATTTGTCCCTTGTATGAA+CGG - chr3.1:19692361-19692380 MS.gene74305:CDS 35.0%
GCTAAGAAGAAACCAAGAAA+TGG - chr3.1:19691324-19691343 MS.gene74305:CDS 35.0%
GGAATTGCTCCAATCTTATT+AGG - chr3.1:19691779-19691798 MS.gene74305:intron 35.0%
GTAAAATTCGAGCGAAAAGA+GGG - chr3.1:19693078-19693097 MS.gene74305:intron 35.0%
GTACACTTAACTTCTCATCT+AGG - chr3.1:19692715-19692734 MS.gene74305:intron 35.0%
GTCATCTTAGTAGAAGAACT+AGG + chr3.1:19693017-19693036 None:intergenic 35.0%
TCATTAGAGAAAAACTCAGC+AGG + chr3.1:19691817-19691836 None:intergenic 35.0%
TCCATCAACAAGTTCAGAAA+TGG - chr3.1:19691498-19691517 MS.gene74305:CDS 35.0%
TGAAAACATTAAGCCCTGTT+CGG + chr3.1:19692165-19692184 None:intergenic 35.0%
TGATATCATCCAACAATGGA+TGG - chr3.1:19691539-19691558 MS.gene74305:intron 35.0%
TGTAAAATTCGAGCGAAAAG+AGG - chr3.1:19693077-19693096 MS.gene74305:intron 35.0%
TTGAATGTAAGCACATGTGT+TGG - chr3.1:19692487-19692506 MS.gene74305:CDS 35.0%
! AATTTTGCAGCAAACAAGCA+CGG - chr3.1:19693612-19693631 MS.gene74305:CDS 35.0%
! ATTTGTTGATCCAAGTAGCT+AGG - chr3.1:19692272-19692291 MS.gene74305:CDS 35.0%
! CTAGCTTCACCAATGAATTT+TGG - chr3.1:19692859-19692878 MS.gene74305:intron 35.0%
! CTTTTCGCTCGAATTTTACA+AGG + chr3.1:19693077-19693096 None:intergenic 35.0%
!! ATCCTTTTCAAGCTAGTAGA+TGG + chr3.1:19692741-19692760 None:intergenic 35.0%
!! GTAGAAAGCTTTAAAGCCAA+TGG - chr3.1:19692681-19692700 MS.gene74305:intron 35.0%
!! TCCATTTCTGAACTTGTTGA+TGG + chr3.1:19691502-19691521 None:intergenic 35.0%
!!! TTTTCAAATGGTTCTGGCAA+TGG - chr3.1:19691685-19691704 MS.gene74305:intron 35.0%
!!! TTTTGGTGGAGTTGATACTA+TGG - chr3.1:19691720-19691739 MS.gene74305:intron 35.0%
AAAGCCAATGGCATCTCAAA+TGG - chr3.1:19692693-19692712 MS.gene74305:intron 40.0%
AAGCCTGTGAAGCAAGAAAT+AGG - chr3.1:19691598-19691617 MS.gene74305:intron 40.0%
AAGCTATCTAGGAGAGCTTA+AGG + chr3.1:19692034-19692053 None:intergenic 40.0%
AGACCTACAAGAACAAGTTC+AGG - chr3.1:19693669-19693688 MS.gene74305:CDS 40.0%
CAGAACCATTTGAAAAGCCT+TGG + chr3.1:19691681-19691700 None:intergenic 40.0%
GAATCTGTTGCACAACAGAA+TGG - chr3.1:19691622-19691641 MS.gene74305:intron 40.0%
GACAGAATCAAGAAACTGCA+AGG - chr3.1:19693256-19693275 MS.gene74305:intron 40.0%
GCAGATACTCACAGATTGTA+AGG - chr3.1:19693799-19693818 MS.gene74305:CDS 40.0%
TATTGGCACACACACTTGTT+AGG - chr3.1:19691946-19691965 MS.gene74305:intron 40.0%
TGCAACATTGACATTGAGAG+AGG - chr3.1:19692659-19692678 MS.gene74305:intron 40.0%
! CAAGGCTTTTCAAATGGTTC+TGG - chr3.1:19691679-19691698 MS.gene74305:intron 40.0%
! GAAGCTAGGTATGTGACTTT+TGG + chr3.1:19692847-19692866 None:intergenic 40.0%
! GACTCTCAAGAAGCAGATTT+TGG - chr3.1:19692954-19692973 MS.gene74305:intron 40.0%
! GGTTTTTATGGCTCTTTTGG+TGG - chr3.1:19691706-19691725 MS.gene74305:intron 40.0%
! GTACCTGAACTTGTTCTTGT+AGG + chr3.1:19693675-19693694 None:intergenic 40.0%
! TCACCTATTTCTTGCTTCAC+AGG + chr3.1:19691604-19691623 None:intergenic 40.0%
! TGTACCATTTGAGATGCCAT+TGG + chr3.1:19692700-19692719 None:intergenic 40.0%
! TTTGAGCGTTGTTGTCGATT+AGG + chr3.1:19691435-19691454 None:intergenic 40.0%
!! GGATCTGAGTTGATTTACCA+AGG - chr3.1:19691661-19691680 MS.gene74305:intron 40.0%
!! GGTTCTGGCAATGGTTTTTA+TGG - chr3.1:19691694-19691713 MS.gene74305:intron 40.0%
AACAAGCACGGCAGATATGT+TGG - chr3.1:19693624-19693643 MS.gene74305:CDS 45.0%
CACGGCAGATATGTTGGATT+TGG - chr3.1:19693630-19693649 MS.gene74305:CDS 45.0%
GAATCAAGCTCCTAGCTACT+TGG + chr3.1:19692285-19692304 None:intergenic 45.0%
! GGCCATCTACTAGCTTGAAA+AGG - chr3.1:19692736-19692755 MS.gene74305:intron 45.0%
!! ATCCAAGAAGCATTGCAGAG+AGG - chr3.1:19693111-19693130 MS.gene74305:intron 45.0%
!! TCCAAGAAGCATTGCAGAGA+GGG - chr3.1:19693112-19693131 MS.gene74305:intron 45.0%
ACCCTCTCTGCAATGCTTCT+TGG + chr3.1:19693116-19693135 None:intergenic 50.0%
GACCCTAGCCGTTCATACAA+GGG + chr3.1:19692372-19692391 None:intergenic 50.0%
GTCCCTTGTATGAACGGCTA+GGG - chr3.1:19692367-19692386 MS.gene74305:CDS 50.0%
TGACCCTAGCCGTTCATACA+AGG + chr3.1:19692373-19692392 None:intergenic 50.0%
TGTCCCTTGTATGAACGGCT+AGG - chr3.1:19692366-19692385 MS.gene74305:CDS 50.0%
AGACGCCACTTGTCATGCAC+CGG - chr3.1:19693523-19693542 MS.gene74305:CDS 55.0%
CATGACCGGTGCATGACAAG+TGG + chr3.1:19693531-19693550 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 19691304 19693874 19691304 ID=MS.gene74305
chr3.1 mRNA 19691304 19693874 19691304 ID=MS.gene74305.t1;Parent=MS.gene74305
chr3.1 exon 19693337 19693874 19693337 ID=MS.gene74305.t1.exon1;Parent=MS.gene74305.t1
chr3.1 CDS 19693337 19693874 19693337 ID=cds.MS.gene74305.t1;Parent=MS.gene74305.t1
chr3.1 exon 19692045 19692523 19692045 ID=MS.gene74305.t1.exon2;Parent=MS.gene74305.t1
chr3.1 CDS 19692045 19692523 19692045 ID=cds.MS.gene74305.t1;Parent=MS.gene74305.t1
chr3.1 exon 19691878 19691943 19691878 ID=MS.gene74305.t1.exon3;Parent=MS.gene74305.t1
chr3.1 CDS 19691878 19691943 19691878 ID=cds.MS.gene74305.t1;Parent=MS.gene74305.t1
chr3.1 exon 19691488 19691556 19691488 ID=MS.gene74305.t1.exon4;Parent=MS.gene74305.t1
chr3.1 CDS 19691488 19691556 19691488 ID=cds.MS.gene74305.t1;Parent=MS.gene74305.t1
chr3.1 exon 19691304 19691375 19691304 ID=MS.gene74305.t1.exon5;Parent=MS.gene74305.t1
chr3.1 CDS 19691304 19691375 19691304 ID=cds.MS.gene74305.t1;Parent=MS.gene74305.t1
Gene Sequence

>MS.gene74305

ATGGGTGCTATGTATGAAGAGCTAAGAAGAAACCAAGAAATGGATTCTTCAAGTATTATTCATTCAAAACAACAAAATTCTGGACTATTGATGAGGTACAATTCTGCTCCAACCTCATTGTTTACAAACCTAATCGACAACAACGCTCAAAACTTTATCAACAACGAAGAATCGTTTACAAACGAGAGTTATATTCCATCAACAAGTTCAGAAATGGATACCATGTTATCCAAGTTGATATCATCCAACAATGGATGGAACAATTCTGAAGAAAATTTGCAAGAGTTTGATGTGAAGCCTGTGAAGCAAGAAATAGGTGAATCTGTTGCACAACAGAATGGTAATTATTCTTATGGTGGATCTGAGTTGATTTACCAAGGCTTTTCAAATGGTTCTGGCAATGGTTTTTATGGCTCTTTTGGTGGAGTTGATACTATGGAATCAGATGATTCTAATCAATCTAAAATTGGTGTTAGGAATTGCTCCAATCTTATTAGGCAAAAGAGTTCCCCTGCTGAGTTTTTCTCTAATGAAAATGGTATGAATTTTTTTCTTATTTGCAAAGTTTTAGAGATTTTAGTTACTGTGTGCTTTTTCCTCTTAATAATTAGGGTCTGTTTGGATTAGCTTATTGAGCTTATCTATTGGCACACACACTTGTTAGGCTATTTTGACAAGCTTATGAAAATATCTTATGACATGTTTTTAAGTTGTTTTCATCTTTTTTCCTTAAGCTCTCCTAGATAGCTTATAAAAACAGCTTATAGGAAAACAAATATGATTTTATTCTATCTTTTATTGTAGAAATAGCTTATGCATAAGAATTTATAGATTAACTCTTATGATATAACTCAATATCCGAACAGGGCTTAATGTTTTCATATAGTTGAAAGATAAATGTTATGATTTAAATTGAAATACTTCTCTTGTATGAAACCAAGATAAAACAAATGAACAATTGGACCAATATTTGTTGATCCAAGTAGCTAGGAGCTTGATTCATCATTAGTAAGGTCTTAGGTTTGAGTCTTGTAAATGAAAAATATAAGTGCAGAAGGAATTTGTCCCTTGTATGAACGGCTAGGGTCATCTCTGTTAAATTATAAAAAAAATGTTCAAAATTAACATATAAAGTACGACATGGATAGGACACTTGACATGACAATAACACTGATGAACGTGATTGAATGTAAGCACATGTGTTGGCGTCGTGTCAGTATGAGATATTGACATGTGTCAGTGCTACACGTGAATTAACTACACTTTGAAAGTTATTTAGCATTAAATCAAATCAAATCAAACCAAACTGTTTGACTTATTTTGATATTTTGAATACTTTTATGAATTGAAGGACTTGCAACATTGACATTGAGAGAGGTAGAAAGCTTTAAAGCCAATGGCATCTCAAATGGTACACTTAACTTCTCATCTAGGCCATCTACTAGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATTCAAAGCTTAGAACCAAATTGTGACCAAACTACAAACCTAGTAAATGAAAATGGTAGCTCCAAAAGTCACATACCTAGCTTCACCAATGAATTTTGGGACAATTCTGCATTCAATGCACACAAAACAGAGAGTGAAGATGAAATAATGTTTTCTACTTCAAATGGTTTGGACTCTCAAGAAGCAGATTTTGGCTATCAAAATCTTGGTTTGACTAGTCATCTGAGTCTTCCTAGTTCTTCTACTAAGATGACATCTATGGAGAATTTTCTTGAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGGTTTGCAACTCATCCAAGAAGCATTGCAGAGAGGGTAAAATTTACTAACAACTATAAATCTATCATTACTCGACCATACTATTATTAAGCCTATGTGATTCAACAGTTTCATATATGTTAATCTGAAAATTTCAGGTCAGAAGAACCAGAATTAGTGACAGAATCAAGAAACTGCAAGGTCTTTTCCCAAAATCAGATAAGGTATTTTAAAGTCTGTTTATTTTCTAAACAAATTCGTAGTTTTTGTTTTTTTGAAATCGATGTTCATTTTAAACCAGACTTTAACTTTCTCAAAAGCATATCATATTGAAACTTCATATGCATTTTAGTAACGTAGTCACAGATATTGGACATGACACTGACACCGACATCAGTAATAACTTTAAAAAATGAAAGTAATTGAATGTCACATGTGTTTGTCTCAGACGCCACTTGTCATGCACCGGTCATGTCTTCAATCTAAAGTGTCGGTGCTATGTAGTTTATATACATTTCGGTAACTTAGTACTTCTAATTTTGCAGCAAACAAGCACGGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTACAAGAACAAGTTCAGGTACAAGAAAATTATATACCTTTGCCCTAAAAATGAAAAGAATAAACACATTGAATGATTAAATTCCATCAAAATCTATAATGTCTAACTAAATTTCTTTCACCTTTTGCAGATACTCACAGATTGTAAGGAAAAATGCAAATGTGCAAGTCATGAGAAGAAACCCTGTAAACCTTGTAGCTGA
Protein sequence

>MS.gene74305.t1

MGAMYEELRRNQEMDSSSIIHSKQQNSGLLMRYNSAPTSLFTNLIDNNAQNFINNEESFTNESYIPSTSSEMDTMLSKLISSNNGWNNSEENLQEFDVKPVKQEIGESVAQQNGNYSYGGSELIYQGFSNGSGNGFYGSFGGVDTMESDDSNQSKIGVRNCSNLIRQKSSPAEFFSNENGLATLTLREVESFKANGISNGTLNFSSRPSTSLKRMPQIAENGIQSLEPNCDQTTNLVNENGSSKSHIPSFTNEFWDNSAFNAHKTESEDEIMFSTSNGLDSQEADFGYQNLGLTSHLSLPSSSTKMTSMENFLEIQGSVPCKIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVQILTDCKEKCKCASHEKKPCKPCS