Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74319.t1 | KEH22406.1 | 78 | 205 | 27 | 1 | 176 | 380 | 70 | 256 | 5.70E-83 | 318.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74319.t1 | Q9SZL8 | 37.0 | 189 | 115 | 4 | 198 | 384 | 77 | 263 | 1.1e-21 | 105.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74319.t1 | A0A072TZ24 | 78.0 | 205 | 27 | 1 | 176 | 380 | 70 | 256 | 4.1e-83 | 318.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene74319.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74319.t1 | MTR_7g446520 | 74.286 | 245 | 45 | 1 | 139 | 383 | 33 | 259 | 6.83e-123 | 359 |
| MS.gene74319.t1 | MTR_7g446520 | 70.213 | 47 | 14 | 0 | 56 | 102 | 15 | 61 | 7.93e-13 | 69.3 |
| MS.gene74319.t1 | MTR_7g028855 | 67.315 | 257 | 82 | 1 | 81 | 337 | 9 | 263 | 6.48e-108 | 326 |
| MS.gene74319.t1 | MTR_7g028855 | 56.667 | 120 | 33 | 3 | 1 | 119 | 1 | 102 | 6.27e-26 | 109 |
| MS.gene74319.t1 | MTR_7g446480 | 46.997 | 383 | 72 | 7 | 1 | 383 | 1 | 252 | 1.11e-95 | 289 |
| MS.gene74319.t1 | MTR_7g446510 | 86.364 | 110 | 15 | 0 | 271 | 380 | 155 | 264 | 8.19e-63 | 205 |
| MS.gene74319.t1 | MTR_1g070355 | 36.788 | 193 | 119 | 2 | 196 | 387 | 76 | 266 | 3.88e-32 | 128 |
| MS.gene74319.t1 | MTR_5g076070 | 33.495 | 206 | 131 | 2 | 151 | 356 | 16 | 215 | 5.28e-29 | 114 |
| MS.gene74319.t1 | MTR_8g467420 | 53.521 | 71 | 33 | 0 | 177 | 247 | 61 | 131 | 1.45e-20 | 88.6 |
| MS.gene74319.t1 | MTR_6g022080 | 25.581 | 172 | 128 | 0 | 185 | 356 | 76 | 247 | 3.14e-19 | 87.0 |
| MS.gene74319.t1 | MTR_6g051425 | 29.048 | 210 | 143 | 4 | 202 | 408 | 25 | 231 | 1.57e-16 | 80.5 |
| MS.gene74319.t1 | MTR_0402s0040 | 33.146 | 178 | 107 | 4 | 198 | 370 | 30 | 200 | 1.10e-15 | 79.0 |
| MS.gene74319.t1 | MTR_6g053140 | 32.203 | 177 | 99 | 6 | 131 | 305 | 47 | 204 | 1.11e-15 | 75.9 |
| MS.gene74319.t1 | MTR_0060s0090 | 38.750 | 80 | 49 | 0 | 197 | 276 | 59 | 138 | 5.32e-14 | 69.7 |
| MS.gene74319.t1 | MTR_3g448650 | 41.250 | 80 | 47 | 0 | 190 | 269 | 78 | 157 | 5.45e-13 | 67.4 |
| MS.gene74319.t1 | MTR_2g098880 | 39.252 | 107 | 63 | 2 | 191 | 296 | 58 | 163 | 6.04e-13 | 68.9 |
| MS.gene74319.t1 | MTR_2g098880 | 39.252 | 107 | 63 | 2 | 191 | 296 | 70 | 175 | 8.96e-13 | 68.6 |
| MS.gene74319.t1 | MTR_1g008290 | 32.231 | 121 | 77 | 2 | 262 | 382 | 18 | 133 | 5.23e-12 | 63.9 |
| MS.gene74319.t1 | MTR_3g080590 | 50.000 | 58 | 29 | 0 | 187 | 244 | 98 | 155 | 1.06e-11 | 63.2 |
| MS.gene74319.t1 | MTR_2g101460 | 33.333 | 120 | 80 | 0 | 190 | 309 | 51 | 170 | 8.91e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74319.t1 | AT4G38180 | 37.037 | 189 | 115 | 4 | 198 | 384 | 77 | 263 | 9.43e-21 | 95.1 |
| MS.gene74319.t1 | AT1G10240 | 31.053 | 190 | 111 | 5 | 200 | 370 | 54 | 242 | 6.89e-15 | 77.0 |
| MS.gene74319.t1 | AT1G10240 | 31.053 | 190 | 111 | 5 | 200 | 370 | 54 | 242 | 6.89e-15 | 77.0 |
| MS.gene74319.t1 | AT3G07500 | 36.885 | 122 | 68 | 4 | 198 | 318 | 37 | 150 | 7.81e-13 | 67.8 |
| MS.gene74319.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 200 | 357 | 61 | 220 | 3.52e-12 | 68.6 |
| MS.gene74319.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 200 | 357 | 61 | 220 | 3.52e-12 | 68.6 |
| MS.gene74319.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 200 | 357 | 61 | 220 | 3.53e-12 | 68.6 |
| MS.gene74319.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 200 | 357 | 61 | 220 | 5.06e-12 | 68.2 |
| MS.gene74319.t1 | AT5G28530 | 29.193 | 161 | 110 | 3 | 200 | 357 | 61 | 220 | 5.51e-12 | 68.2 |
Find 79 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAATGACTTTACGGATTT+TGG | 0.057115 | 3.1:-19899749 | MS.gene74319:CDS |
| AATAAGAACTTGTCATATAA+TGG | 0.247315 | 3.1:-19898781 | MS.gene74319:CDS |
| TGTTCACTACAGACCCAAAA+AGG | 0.266221 | 3.1:-19898940 | MS.gene74319:CDS |
| TGCATTTACACCCTGTTTAT+CGG | 0.290641 | 3.1:-19898854 | MS.gene74319:CDS |
| CATTAACTGCTGAAGGAATA+AGG | 0.318241 | 3.1:-19899196 | MS.gene74319:CDS |
| TGCTGAAGGAATAAGGAAAA+TGG | 0.318497 | 3.1:-19899189 | MS.gene74319:CDS |
| AAACAACAACAATGACTTTA+CGG | 0.325210 | 3.1:-19899756 | MS.gene74319:CDS |
| AGTGATTATGGTGGTTGTTC+TGG | 0.332652 | 3.1:-19899521 | MS.gene74319:CDS |
| AGAACATGATTACGGTTCTA+TGG | 0.346263 | 3.1:-19899720 | MS.gene74319:CDS |
| GAAGATGATGATGTAGTTAT+TGG | 0.356275 | 3.1:-19899242 | MS.gene74319:CDS |
| CATTGGTTGGAGTAGGTTCA+TGG | 0.373380 | 3.1:+19898880 | None:intergenic |
| AGATCAGATTATTTCTGCTT+TGG | 0.376852 | 3.1:-19898531 | MS.gene74319:CDS |
| GGAGACAATGAAAGTGATTA+TGG | 0.394825 | 3.1:-19899533 | MS.gene74319:CDS |
| ATAAGAACTTGTCATATAAT+GGG | 0.403187 | 3.1:-19898780 | MS.gene74319:CDS |
| GCTCAGAAGGGTGGATATCC+TGG | 0.409450 | 3.1:-19898747 | MS.gene74319:CDS |
| GGTACACCAGAACATGATTA+CGG | 0.421572 | 3.1:-19899728 | MS.gene74319:CDS |
| GATTATAGTGCTGGTGATAA+AGG | 0.421954 | 3.1:-19899497 | MS.gene74319:CDS |
| GATATTAGACGCAATGTTAA+CGG | 0.432015 | 3.1:-19899089 | MS.gene74319:CDS |
| AGCATTTATCAAGGTTAGAT+AGG | 0.434364 | 3.1:-19899013 | MS.gene74319:CDS |
| GAGAGATGAAGCATTTATCA+AGG | 0.455085 | 3.1:-19899022 | MS.gene74319:CDS |
| AAGGGTGGATATCCTGGTGT+TGG | 0.458467 | 3.1:-19898741 | MS.gene74319:CDS |
| TATAAGTACGGTAAGTGTAA+AGG | 0.460291 | 3.1:-19899131 | MS.gene74319:CDS |
| ACAAAATCACCAACGGATAG+TGG | 0.461754 | 3.1:+19898466 | None:intergenic |
| GGGATACATGGTGGCTCAGA+AGG | 0.464555 | 3.1:-19898760 | MS.gene74319:CDS |
| TAGTGAACACGGAGCCTAGC+TGG | 0.466097 | 3.1:+19898954 | None:intergenic |
| GATGAGCGATATGATGAAAC+TGG | 0.468588 | 3.1:-19899554 | MS.gene74319:CDS |
| GTAGATAAAGCACAAATTGA+TGG | 0.469140 | 3.1:-19898819 | MS.gene74319:CDS |
| GAAACATATCCGATCATTGT+TGG | 0.475306 | 3.1:-19899680 | MS.gene74319:CDS |
| AGGGTGGATATCCTGGTGTT+GGG | 0.476260 | 3.1:-19898740 | MS.gene74319:CDS |
| TGATTACGGTTCTATGGATG+TGG | 0.483745 | 3.1:-19899714 | MS.gene74319:CDS |
| TGTTCTGGTGATTATAGTGC+TGG | 0.489646 | 3.1:-19899506 | MS.gene74319:CDS |
| TGTAGTTATTGGTGAGGAAA+TGG | 0.491507 | 3.1:-19899231 | MS.gene74319:CDS |
| AAACATATCCGATCATTGTT+GGG | 0.491804 | 3.1:-19899679 | MS.gene74319:CDS |
| ATAGAACCGTAATCATGTTC+TGG | 0.494181 | 3.1:+19899722 | None:intergenic |
| GCAGTATGTATGTAACAAGC+AGG | 0.502107 | 3.1:-19899051 | MS.gene74319:CDS |
| AAGAATACTCAAGGGAATAC+AGG | 0.512005 | 3.1:-19899578 | MS.gene74319:CDS |
| ATAAATTCATTAACTGCTGA+AGG | 0.519495 | 3.1:-19899203 | MS.gene74319:CDS |
| CCGATCATTGTTGGGAGTGG+TGG | 0.525336 | 3.1:-19899671 | MS.gene74319:CDS |
| CCACCACTCCCAACAATGAT+CGG | 0.545431 | 3.1:+19899671 | None:intergenic |
| ATGTGTGCTGTTATTAAGGA+TGG | 0.553864 | 3.1:-19898678 | MS.gene74319:CDS |
| TTGTCATATAATGGGATACA+TGG | 0.555297 | 3.1:-19898772 | MS.gene74319:CDS |
| TGTAAATGCACAACATTGGT+TGG | 0.560698 | 3.1:+19898867 | None:intergenic |
| TTCTTAGTGAACCCAACACC+AGG | 0.567834 | 3.1:+19898729 | None:intergenic |
| TACATGGTGGCTCAGAAGGG+TGG | 0.573659 | 3.1:-19898756 | MS.gene74319:CDS |
| TATCCGATCATTGTTGGGAG+TGG | 0.573961 | 3.1:-19899674 | MS.gene74319:CDS |
| GATGAAAGTCAAGGTGATGA+AGG | 0.579998 | 3.1:-19899452 | MS.gene74319:CDS |
| TTATTTCTGCTTTGGCGATG+TGG | 0.587488 | 3.1:-19898523 | MS.gene74319:CDS |
| GATGAAGGTGAACGTGATGA+AGG | 0.589312 | 3.1:-19899392 | MS.gene74319:CDS |
| GATGAACGTGAAGGTGATGA+AGG | 0.589312 | 3.1:-19899407 | MS.gene74319:CDS |
| GGTGATAAAGGTGAAGATGA+TGG | 0.589452 | 3.1:-19899485 | MS.gene74319:CDS |
| GAAGGTGAACGTGATGAAGG+TGG | 0.592672 | 3.1:-19899389 | MS.gene74319:CDS |
| CAGTATGTATGTAACAAGCA+GGG | 0.595708 | 3.1:-19899050 | MS.gene74319:CDS |
| GGATACATGGTGGCTCAGAA+GGG | 0.612576 | 3.1:-19898759 | MS.gene74319:CDS |
| AGTGAAGGTCATGGTAGTGA+AGG | 0.614950 | 3.1:-19899281 | MS.gene74319:CDS |
| TTATTGGTGAGGAAATGGTA+AGG | 0.618138 | 3.1:-19899226 | MS.gene74319:CDS |
| AGGGTGTAAATGCACAACAT+TGG | 0.627835 | 3.1:+19898863 | None:intergenic |
| TGCACAACATTGGTTGGAGT+AGG | 0.634569 | 3.1:+19898873 | None:intergenic |
| GAACAAATACCACTATCCGT+TGG | 0.644673 | 3.1:-19898475 | MS.gene74319:CDS |
| CTCGTACAAAGTGTCCAGCT+AGG | 0.644688 | 3.1:-19898968 | MS.gene74319:CDS |
| GGTGAACGTGATGAAGGTGG+AGG | 0.647603 | 3.1:-19899386 | MS.gene74319:CDS |
| AGTATGTATGTAACAAGCAG+GGG | 0.650597 | 3.1:-19899049 | MS.gene74319:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3.1:-19899290 | MS.gene74319:CDS |
| GGTGATGAAAGTGAAGGTCA+TGG | 0.667300 | 3.1:-19899335 | MS.gene74319:CDS |
| TCATATAATGGGATACATGG+TGG | 0.669224 | 3.1:-19898769 | MS.gene74319:CDS |
| CAGCCAGACAAAATCACCAA+CGG | 0.675882 | 3.1:+19898459 | None:intergenic |
| GATGATGATGATGTGAGTCA+TGG | 0.679569 | 3.1:-19899611 | MS.gene74319:CDS |
| TTAACGGTGAGATTGTAATG+AGG | 0.680367 | 3.1:-19899073 | MS.gene74319:CDS |
| TGATGATGTAGTTATTGGTG+AGG | 0.687185 | 3.1:-19899237 | MS.gene74319:CDS |
| GACAATGAAAGTGATTATGG+TGG | 0.688706 | 3.1:-19899530 | MS.gene74319:CDS |
| AGTGAAGTTGATGAAAGTGA+AGG | 0.694719 | 3.1:-19899311 | MS.gene74319:CDS |
| GGTGGAGGTGATGAAAGTGA+AGG | 0.700815 | 3.1:-19899371 | MS.gene74319:CDS |
| ATTGATGGTCTTCAGTCACA+CGG | 0.717148 | 3.1:-19898804 | MS.gene74319:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3.1:-19899296 | MS.gene74319:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3.1:-19899341 | MS.gene74319:CDS |
| AGTGAAGGTGATGAAAGTGA+AGG | 0.717258 | 3.1:-19899356 | MS.gene74319:CDS |
| GGTGAAAGTGATGAAAGTGA+AGG | 0.717258 | 3.1:-19899431 | MS.gene74319:CDS |
| AGTGAATGTGATGAAAGTCA+AGG | 0.717258 | 3.1:-19899461 | MS.gene74319:CDS |
| AGTGAAGGTGATGAACGTGA+AGG | 0.728116 | 3.1:-19899416 | MS.gene74319:CDS |
| TGTTTATCGGAAAATATACG+AGG | 0.773295 | 3.1:-19898841 | MS.gene74319:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTTTATTATAAGTA+CGG | - | chr3.1:19899090-19899109 | MS.gene74319:CDS | 10.0% |
| !! | AATAAGAACTTGTCATATAA+TGG | - | chr3.1:19899452-19899471 | MS.gene74319:CDS | 20.0% |
| !! | ATAAGAACTTGTCATATAAT+GGG | - | chr3.1:19899453-19899472 | MS.gene74319:CDS | 20.0% |
| ! | AAACAACAACAATGACTTTA+CGG | - | chr3.1:19898477-19898496 | MS.gene74319:CDS | 25.0% |
| ! | ATAAATTCATTAACTGCTGA+AGG | - | chr3.1:19899030-19899049 | MS.gene74319:CDS | 25.0% |
| !! | AAAAATGTGTGCTGTTATTA+AGG | - | chr3.1:19899551-19899570 | MS.gene74319:CDS | 25.0% |
| !! | AATTTTACGAAGAATACTCA+AGG | - | chr3.1:19898646-19898665 | MS.gene74319:intron | 25.0% |
| !! | ATTTTACGAAGAATACTCAA+GGG | - | chr3.1:19898647-19898666 | MS.gene74319:CDS | 25.0% |
| !!! | ACGTTTGAAATGTCTATTTT+GGG | - | chr3.1:19899665-19899684 | MS.gene74319:CDS | 25.0% |
| AAACATATCCGATCATTGTT+GGG | - | chr3.1:19898554-19898573 | MS.gene74319:intron | 30.0% | |
| AGCATTTATCAAGGTTAGAT+AGG | - | chr3.1:19899220-19899239 | MS.gene74319:CDS | 30.0% | |
| GAATATTCACAAAAGGAATG+TGG | + | chr3.1:19899630-19899649 | None:intergenic | 30.0% | |
| GATATTAGACGCAATGTTAA+CGG | - | chr3.1:19899144-19899163 | MS.gene74319:CDS | 30.0% | |
| GTAGATAAAGCACAAATTGA+TGG | - | chr3.1:19899414-19899433 | MS.gene74319:CDS | 30.0% | |
| TATAAGTACGGTAAGTGTAA+AGG | - | chr3.1:19899102-19899121 | MS.gene74319:CDS | 30.0% | |
| TGTTTATCGGAAAATATACG+AGG | - | chr3.1:19899392-19899411 | MS.gene74319:CDS | 30.0% | |
| ! | AACAATGACTTTACGGATTT+TGG | - | chr3.1:19898484-19898503 | MS.gene74319:CDS | 30.0% |
| ! | ACAACATATCTACCCTTTTT+GGG | + | chr3.1:19899309-19899328 | None:intergenic | 30.0% |
| ! | CGTATATTTTCCGATAAACA+GGG | + | chr3.1:19899392-19899411 | None:intergenic | 30.0% |
| ! | GAAGATGATGATGTAGTTAT+TGG | - | chr3.1:19898991-19899010 | MS.gene74319:CDS | 30.0% |
| ! | TCGTATATTTTCCGATAAAC+AGG | + | chr3.1:19899393-19899412 | None:intergenic | 30.0% |
| ! | TTGTCATATAATGGGATACA+TGG | - | chr3.1:19899461-19899480 | MS.gene74319:CDS | 30.0% |
| !! | AAATGTCTATTTTGGGAAGA+TGG | - | chr3.1:19899672-19899691 | MS.gene74319:CDS | 30.0% |
| !! | AGATCAGATTATTTCTGCTT+TGG | - | chr3.1:19899702-19899721 | MS.gene74319:CDS | 30.0% |
| !! | GACGTTTGAAATGTCTATTT+TGG | - | chr3.1:19899664-19899683 | MS.gene74319:CDS | 30.0% |
| !!! | GTTGTGTCTATTTTTGAAGA+GGG | - | chr3.1:19899324-19899343 | MS.gene74319:CDS | 30.0% |
| !!! | TGTTGTGTCTATTTTTGAAG+AGG | - | chr3.1:19899323-19899342 | MS.gene74319:CDS | 30.0% |
| AAGAATACTCAAGGGAATAC+AGG | - | chr3.1:19898655-19898674 | MS.gene74319:CDS | 35.0% | |
| AGAACATGATTACGGTTCTA+TGG | - | chr3.1:19898513-19898532 | MS.gene74319:CDS | 35.0% | |
| AGTATGTATGTAACAAGCAG+GGG | - | chr3.1:19899184-19899203 | MS.gene74319:CDS | 35.0% | |
| AGTGAATGTGATGAAAGTCA+AGG | - | chr3.1:19898772-19898791 | MS.gene74319:CDS | 35.0% | |
| AGTGGCAGAATATTCACAAA+AGG | + | chr3.1:19899637-19899656 | None:intergenic | 35.0% | |
| ATAGAACCGTAATCATGTTC+TGG | + | chr3.1:19898514-19898533 | None:intergenic | 35.0% | |
| CAGTATGTATGTAACAAGCA+GGG | - | chr3.1:19899183-19899202 | MS.gene74319:CDS | 35.0% | |
| CATTAACTGCTGAAGGAATA+AGG | - | chr3.1:19899037-19899056 | MS.gene74319:CDS | 35.0% | |
| GAAACATATCCGATCATTGT+TGG | - | chr3.1:19898553-19898572 | MS.gene74319:intron | 35.0% | |
| GACAATGAAAGTGATTATGG+TGG | - | chr3.1:19898703-19898722 | MS.gene74319:CDS | 35.0% | |
| GGAGACAATGAAAGTGATTA+TGG | - | chr3.1:19898700-19898719 | MS.gene74319:CDS | 35.0% | |
| TGCATTTACACCCTGTTTAT+CGG | - | chr3.1:19899379-19899398 | MS.gene74319:CDS | 35.0% | |
| TGCTGAAGGAATAAGGAAAA+TGG | - | chr3.1:19899044-19899063 | MS.gene74319:CDS | 35.0% | |
| TGTAAATGCACAACATTGGT+TGG | + | chr3.1:19899369-19899388 | None:intergenic | 35.0% | |
| TGTAGTTATTGGTGAGGAAA+TGG | - | chr3.1:19899002-19899021 | MS.gene74319:CDS | 35.0% | |
| TTAACGGTGAGATTGTAATG+AGG | - | chr3.1:19899160-19899179 | MS.gene74319:CDS | 35.0% | |
| TTATTGGTGAGGAAATGGTA+AGG | - | chr3.1:19899007-19899026 | MS.gene74319:CDS | 35.0% | |
| ! | ATGTGTGCTGTTATTAAGGA+TGG | - | chr3.1:19899555-19899574 | MS.gene74319:CDS | 35.0% |
| ! | CACAACATATCTACCCTTTT+TGG | + | chr3.1:19899310-19899329 | None:intergenic | 35.0% |
| ! | GAGAGATGAAGCATTTATCA+AGG | - | chr3.1:19899211-19899230 | MS.gene74319:CDS | 35.0% |
| ! | TCATATAATGGGATACATGG+TGG | - | chr3.1:19899464-19899483 | MS.gene74319:CDS | 35.0% |
| ! | TGATGATGTAGTTATTGGTG+AGG | - | chr3.1:19898996-19899015 | MS.gene74319:CDS | 35.0% |
| !! | AGTGAAGTTGATGAAAGTGA+AGG | - | chr3.1:19898922-19898941 | MS.gene74319:CDS | 35.0% |
| !! | GATTATAGTGCTGGTGATAA+AGG | - | chr3.1:19898736-19898755 | MS.gene74319:CDS | 35.0% |
| !!! | AGTGTAAAGGTTTTGCTGTT+AGG | - | chr3.1:19899115-19899134 | MS.gene74319:CDS | 35.0% |
| AGGGTGTAAATGCACAACAT+TGG | + | chr3.1:19899373-19899392 | None:intergenic | 40.0% | |
| AGTGAAGGTGATGAAAGTGA+AGG | - | chr3.1:19898877-19898896 | MS.gene74319:CDS | 40.0% | |
| AGTGATTATGGTGGTTGTTC+TGG | - | chr3.1:19898712-19898731 | MS.gene74319:CDS | 40.0% | |
| GAACAAATACCACTATCCGT+TGG | - | chr3.1:19899758-19899777 | MS.gene74319:CDS | 40.0% | |
| GATGAAAGTCAAGGTGATGA+AGG | - | chr3.1:19898781-19898800 | MS.gene74319:CDS | 40.0% | |
| GATGAGCGATATGATGAAAC+TGG | - | chr3.1:19898679-19898698 | MS.gene74319:CDS | 40.0% | |
| GCAGTATGTATGTAACAAGC+AGG | - | chr3.1:19899182-19899201 | MS.gene74319:CDS | 40.0% | |
| GGTACACCAGAACATGATTA+CGG | - | chr3.1:19898505-19898524 | MS.gene74319:CDS | 40.0% | |
| GGTGAAAGTGATGAAAGTGA+AGG | - | chr3.1:19898802-19898821 | MS.gene74319:CDS | 40.0% | |
| GGTGATAAAGGTGAAGATGA+TGG | - | chr3.1:19898748-19898767 | MS.gene74319:CDS | 40.0% | |
| GTTCACTACAGACCCAAAAA+GGG | - | chr3.1:19899294-19899313 | MS.gene74319:CDS | 40.0% | |
| TGATTACGGTTCTATGGATG+TGG | - | chr3.1:19898519-19898538 | MS.gene74319:CDS | 40.0% | |
| TGTTCACTACAGACCCAAAA+AGG | - | chr3.1:19899293-19899312 | MS.gene74319:CDS | 40.0% | |
| TGTTCTGGTGATTATAGTGC+TGG | - | chr3.1:19898727-19898746 | MS.gene74319:CDS | 40.0% | |
| TTTCAAACGTCTGTCATCAG+TGG | + | chr3.1:19899655-19899674 | None:intergenic | 40.0% | |
| ! | ATTGATGGTCTTCAGTCACA+CGG | - | chr3.1:19899429-19899448 | MS.gene74319:CDS | 40.0% |
| ! | GATGATGATGATGTGAGTCA+TGG | - | chr3.1:19898622-19898641 | MS.gene74319:intron | 40.0% |
| !! | TTATTTCTGCTTTGGCGATG+TGG | - | chr3.1:19899710-19899729 | MS.gene74319:CDS | 40.0% |
| !! | TTTTGGGTCTGTAGTGAACA+CGG | + | chr3.1:19899293-19899312 | None:intergenic | 40.0% |
| AGTGAAGGTGATGAACGTGA+AGG | - | chr3.1:19898817-19898836 | MS.gene74319:CDS | 45.0% | |
| GATGAACGTGAAGGTGATGA+AGG | - | chr3.1:19898826-19898845 | MS.gene74319:CDS | 45.0% | |
| GATGAAGGTGAACGTGATGA+AGG | - | chr3.1:19898841-19898860 | MS.gene74319:CDS | 45.0% | |
| GGTGATGAAAGTGAAGGTCA+TGG | - | chr3.1:19898898-19898917 | MS.gene74319:CDS | 45.0% | |
| TATCCGATCATTGTTGGGAG+TGG | - | chr3.1:19898559-19898578 | MS.gene74319:intron | 45.0% | |
| TTCTTAGTGAACCCAACACC+AGG | + | chr3.1:19899507-19899526 | None:intergenic | 45.0% | |
| ! | AGTGAAGGTCATGGTAGTGA+AGG | - | chr3.1:19898907-19898926 | MS.gene74319:CDS | 45.0% |
| ! | CATTGGTTGGAGTAGGTTCA+TGG | + | chr3.1:19899356-19899375 | None:intergenic | 45.0% |
| ! | TGCACAACATTGGTTGGAGT+AGG | + | chr3.1:19899363-19899382 | None:intergenic | 45.0% |
| AAGGGTGGATATCCTGGTGT+TGG | - | chr3.1:19899492-19899511 | MS.gene74319:CDS | 50.0% | |
| AGGGTGGATATCCTGGTGTT+GGG | - | chr3.1:19899493-19899512 | MS.gene74319:CDS | 50.0% | |
| CCACCACTCCCAACAATGAT+CGG | + | chr3.1:19898565-19898584 | None:intergenic | 50.0% | |
| GAAGGTGAACGTGATGAAGG+TGG | - | chr3.1:19898844-19898863 | MS.gene74319:CDS | 50.0% | |
| GGATACATGGTGGCTCAGAA+GGG | - | chr3.1:19899474-19899493 | MS.gene74319:CDS | 50.0% | |
| GGTGGAGGTGATGAAAGTGA+AGG | - | chr3.1:19898862-19898881 | MS.gene74319:CDS | 50.0% | |
| ! | CTCGTACAAAGTGTCCAGCT+AGG | - | chr3.1:19899265-19899284 | MS.gene74319:CDS | 50.0% |
| CCGATCATTGTTGGGAGTGG+TGG | - | chr3.1:19898562-19898581 | MS.gene74319:intron | 55.0% | |
| GCTCAGAAGGGTGGATATCC+TGG | - | chr3.1:19899486-19899505 | MS.gene74319:CDS | 55.0% | |
| GGGATACATGGTGGCTCAGA+AGG | - | chr3.1:19899473-19899492 | MS.gene74319:CDS | 55.0% | |
| GGTGAACGTGATGAAGGTGG+AGG | - | chr3.1:19898847-19898866 | MS.gene74319:CDS | 55.0% | |
| TACATGGTGGCTCAGAAGGG+TGG | - | chr3.1:19899477-19899496 | MS.gene74319:CDS | 55.0% | |
| TAGTGAACACGGAGCCTAGC+TGG | + | chr3.1:19899282-19899301 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 19898472 | 19899783 | 19898472 | ID=MS.gene74319 |
| chr3.1 | mRNA | 19898472 | 19899783 | 19898472 | ID=MS.gene74319.t1;Parent=MS.gene74319 |
| chr3.1 | exon | 19898647 | 19899783 | 19898647 | ID=MS.gene74319.t1.exon1;Parent=MS.gene74319.t1 |
| chr3.1 | CDS | 19898647 | 19899783 | 19898647 | ID=cds.MS.gene74319.t1;Parent=MS.gene74319.t1 |
| chr3.1 | exon | 19898472 | 19898564 | 19898472 | ID=MS.gene74319.t1.exon2;Parent=MS.gene74319.t1 |
| chr3.1 | CDS | 19898472 | 19898564 | 19898472 | ID=cds.MS.gene74319.t1;Parent=MS.gene74319.t1 |
| Gene Sequence |
| Protein sequence |
