Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74411.t1 | KAA3475817.1 | 75.9 | 79 | 17 | 1 | 87 | 165 | 101 | 177 | 2.10E-23 | 119 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74411.t1 | Q2V9B0 | 73.1 | 78 | 19 | 1 | 87 | 164 | 94 | 169 | 3.6e-24 | 112.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74411.t1 | A0A5B6W3Z6 | 75.9 | 79 | 17 | 1 | 87 | 165 | 101 | 177 | 1.5e-23 | 119.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene74411.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74411.t1 | MTR_0036s0260 | 72.941 | 85 | 21 | 1 | 78 | 162 | 18 | 100 | 3.99e-34 | 119 |
| MS.gene74411.t1 | MTR_2g090305 | 70.588 | 85 | 23 | 1 | 78 | 162 | 18 | 100 | 2.00e-32 | 114 |
| MS.gene74411.t1 | MTR_4g100630 | 70.423 | 71 | 19 | 1 | 87 | 157 | 94 | 162 | 3.73e-28 | 107 |
| MS.gene74411.t1 | MTR_2g100930 | 67.123 | 73 | 22 | 1 | 87 | 159 | 108 | 178 | 4.38e-28 | 107 |
| MS.gene74411.t1 | MTR_5g037080 | 79.730 | 74 | 13 | 1 | 87 | 160 | 101 | 172 | 5.22e-28 | 106 |
| MS.gene74411.t1 | MTR_6g092540 | 70.588 | 68 | 18 | 1 | 87 | 154 | 96 | 161 | 1.91e-27 | 104 |
| MS.gene74411.t1 | MTR_4g107230 | 83.562 | 73 | 10 | 1 | 87 | 159 | 83 | 153 | 4.56e-27 | 103 |
| MS.gene74411.t1 | MTR_8g101650 | 67.647 | 68 | 19 | 1 | 87 | 154 | 104 | 168 | 7.54e-27 | 102 |
| MS.gene74411.t1 | MTR_4g111975 | 67.143 | 70 | 21 | 1 | 87 | 156 | 137 | 204 | 2.89e-25 | 99.0 |
| MS.gene74411.t1 | MTR_5g069710 | 65.714 | 70 | 22 | 1 | 87 | 156 | 131 | 198 | 1.40e-24 | 97.1 |
| MS.gene74411.t1 | MTR_3g462790 | 65.714 | 70 | 22 | 1 | 87 | 156 | 146 | 213 | 1.47e-24 | 97.4 |
| MS.gene74411.t1 | MTR_1g111830 | 64.286 | 70 | 23 | 1 | 87 | 156 | 123 | 190 | 5.46e-24 | 94.4 |
| MS.gene74411.t1 | MTR_7g067080 | 65.217 | 69 | 22 | 1 | 87 | 155 | 139 | 205 | 1.25e-23 | 94.7 |
| MS.gene74411.t1 | MTR_5g081860 | 60.274 | 73 | 29 | 0 | 87 | 159 | 124 | 196 | 6.80e-23 | 92.0 |
| MS.gene74411.t1 | MTR_8g063600 | 57.971 | 69 | 29 | 0 | 87 | 155 | 105 | 173 | 3.84e-22 | 90.1 |
| MS.gene74411.t1 | MTR_3g104370 | 56.944 | 72 | 30 | 1 | 87 | 157 | 90 | 161 | 2.59e-20 | 84.3 |
| MS.gene74411.t1 | MTR_8g063870 | 53.030 | 66 | 31 | 0 | 90 | 155 | 94 | 159 | 5.53e-18 | 79.0 |
| MS.gene74411.t1 | MTR_5g088010 | 43.902 | 82 | 42 | 2 | 88 | 165 | 60 | 141 | 4.66e-17 | 75.9 |
| MS.gene74411.t1 | MTR_5g027570 | 43.210 | 81 | 43 | 1 | 88 | 165 | 92 | 172 | 7.14e-17 | 75.1 |
| MS.gene74411.t1 | MTR_5g088060 | 45.570 | 79 | 39 | 2 | 90 | 164 | 274 | 352 | 8.95e-17 | 77.0 |
| MS.gene74411.t1 | MTR_5g488160 | 45.570 | 79 | 39 | 2 | 90 | 164 | 274 | 352 | 8.95e-17 | 77.0 |
| MS.gene74411.t1 | MTR_1g048660 | 50.746 | 67 | 29 | 2 | 89 | 154 | 13 | 76 | 9.14e-15 | 66.2 |
| MS.gene74411.t1 | MTR_4g015130 | 56.897 | 58 | 23 | 1 | 98 | 155 | 3 | 58 | 2.84e-14 | 64.7 |
| MS.gene74411.t1 | MTR_5g027550 | 46.753 | 77 | 37 | 2 | 88 | 160 | 77 | 153 | 3.43e-14 | 67.8 |
| MS.gene74411.t1 | MTR_1g033620 | 64.151 | 53 | 17 | 1 | 104 | 156 | 21 | 71 | 2.93e-13 | 65.5 |
| MS.gene74411.t1 | MTR_3g070110 | 46.575 | 73 | 32 | 2 | 90 | 156 | 97 | 168 | 1.96e-11 | 60.5 |
| MS.gene74411.t1 | MTR_5g075760 | 46.875 | 64 | 32 | 2 | 90 | 152 | 107 | 169 | 4.33e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74411.t1 | AT5G47390 | 67.500 | 80 | 24 | 1 | 87 | 166 | 95 | 172 | 7.83e-30 | 112 |
| MS.gene74411.t1 | AT1G49010 | 68.571 | 70 | 20 | 1 | 87 | 156 | 133 | 200 | 1.54e-25 | 99.8 |
| MS.gene74411.t1 | AT1G70000 | 74.324 | 74 | 17 | 1 | 87 | 160 | 97 | 168 | 3.94e-25 | 97.8 |
| MS.gene74411.t1 | AT1G70000 | 74.324 | 74 | 17 | 1 | 87 | 160 | 97 | 168 | 3.94e-25 | 97.8 |
| MS.gene74411.t1 | AT5G58900 | 65.714 | 70 | 22 | 1 | 87 | 156 | 140 | 207 | 7.02e-25 | 97.4 |
| MS.gene74411.t1 | AT2G38090 | 64.286 | 70 | 23 | 1 | 87 | 156 | 140 | 207 | 1.97e-24 | 96.7 |
| MS.gene74411.t1 | AT5G04760 | 64.286 | 70 | 23 | 1 | 87 | 156 | 98 | 165 | 3.73e-24 | 94.0 |
| MS.gene74411.t1 | AT1G74840 | 74.324 | 74 | 17 | 1 | 87 | 160 | 95 | 166 | 3.90e-24 | 94.7 |
| MS.gene74411.t1 | AT5G56840 | 61.429 | 70 | 26 | 1 | 87 | 156 | 90 | 158 | 4.45e-24 | 94.4 |
| MS.gene74411.t1 | AT1G74840 | 74.324 | 74 | 17 | 1 | 87 | 160 | 95 | 166 | 4.46e-24 | 95.1 |
| MS.gene74411.t1 | AT1G19000 | 70.513 | 78 | 21 | 1 | 87 | 164 | 101 | 176 | 6.03e-24 | 95.1 |
| MS.gene74411.t1 | AT1G19000 | 70.513 | 78 | 21 | 1 | 87 | 164 | 101 | 176 | 6.03e-24 | 95.1 |
| MS.gene74411.t1 | AT5G61620 | 63.380 | 71 | 24 | 2 | 87 | 157 | 107 | 175 | 1.74e-23 | 94.4 |
| MS.gene74411.t1 | AT5G08520 | 64.286 | 70 | 23 | 1 | 87 | 156 | 117 | 184 | 1.84e-23 | 94.0 |
| MS.gene74411.t1 | AT5G01200 | 43.411 | 129 | 64 | 2 | 28 | 156 | 93 | 212 | 3.37e-23 | 92.8 |
| MS.gene74411.t1 | AT3G16350 | 67.568 | 74 | 22 | 1 | 87 | 160 | 136 | 207 | 3.69e-23 | 94.4 |
| MS.gene74411.t1 | AT5G05790 | 50.505 | 99 | 42 | 3 | 63 | 156 | 101 | 197 | 2.85e-22 | 90.5 |
| MS.gene74411.t1 | AT5G05790 | 50.505 | 99 | 42 | 3 | 63 | 156 | 101 | 197 | 2.85e-22 | 90.5 |
| MS.gene74411.t1 | AT3G11280 | 58.108 | 74 | 29 | 1 | 87 | 160 | 126 | 197 | 5.93e-22 | 89.4 |
| MS.gene74411.t1 | AT3G11280 | 58.108 | 74 | 29 | 1 | 87 | 160 | 126 | 197 | 5.93e-22 | 89.4 |
| MS.gene74411.t1 | AT3G10580 | 53.623 | 69 | 28 | 1 | 87 | 155 | 94 | 158 | 1.48e-17 | 77.4 |
| MS.gene74411.t1 | AT3G10580 | 53.623 | 69 | 28 | 1 | 87 | 155 | 94 | 158 | 2.42e-17 | 77.4 |
| MS.gene74411.t1 | AT4G09450 | 50.000 | 74 | 35 | 1 | 87 | 160 | 90 | 161 | 1.41e-16 | 73.9 |
| MS.gene74411.t1 | AT3G10590 | 50.704 | 71 | 32 | 2 | 89 | 159 | 112 | 179 | 1.69e-16 | 73.9 |
| MS.gene74411.t1 | AT5G23650 | 55.072 | 69 | 29 | 1 | 87 | 155 | 119 | 185 | 8.26e-16 | 73.6 |
Find 53 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCTATGGTGGCCGAAAA+TGG | 0.310963 | 6.4:-886371 | MS.gene74411:CDS |
| AATCCTGGCGGCACCAACTA+TGG | 0.329669 | 6.4:-887030 | MS.gene74411:CDS |
| CAACGGAGCCTGATGGATTC+TGG | 0.334310 | 6.4:+887065 | None:intergenic |
| AGTTGGTGCCGCCAGGATTA+TGG | 0.347678 | 6.4:+887034 | None:intergenic |
| CCAACCCTTTCTTCTTGCTT+AGG | 0.375499 | 6.4:-886978 | MS.gene74411:intron |
| TTGGTTGGATTGCAGAAAGT+TGG | 0.394483 | 6.4:-883769 | MS.gene74411:CDS |
| CTAAGCAAGAAGAAAGGGTT+GGG | 0.426663 | 6.4:+886979 | None:intergenic |
| GGAGGGGTCGATGGTGGCAT+TGG | 0.438320 | 6.4:+887090 | None:intergenic |
| AGAAAGTTGGAAAAGGTGAT+AGG | 0.453364 | 6.4:-883756 | MS.gene74411:CDS |
| CCCTCCCACCAGAATCCATC+AGG | 0.490036 | 6.4:-887073 | MS.gene74411:CDS |
| GGTCGATGGTGGCATTGGCA+TGG | 0.493461 | 6.4:+887095 | None:intergenic |
| CCTGATGGATTCTGGTGGGA+GGG | 0.494547 | 6.4:+887073 | None:intergenic |
| CTTAGTTCATCGGGCTCCAT+CGG | 0.496160 | 6.4:+886343 | None:intergenic |
| ACAACTGCTCTTAGTTCATC+GGG | 0.500188 | 6.4:+886334 | None:intergenic |
| AGGCCATAGTTGGTGCCGCC+AGG | 0.500796 | 6.4:+887027 | None:intergenic |
| TTAAACCTAAGCAAGAAGAA+AGG | 0.501787 | 6.4:+886973 | None:intergenic |
| GCCTGATGGATTCTGGTGGG+AGG | 0.507971 | 6.4:+887072 | None:intergenic |
| ATTCTGGTGGGAGGGGTCGA+TGG | 0.509187 | 6.4:+887081 | None:intergenic |
| AGTGGTGATATCATAGAGAC+TGG | 0.518743 | 6.4:+883618 | None:intergenic |
| GACAACTGCTCTTAGTTCAT+CGG | 0.519655 | 6.4:+886333 | None:intergenic |
| TAAACCTAAGCAAGAAGAAA+GGG | 0.521492 | 6.4:+886974 | None:intergenic |
| CTGATGGATTCTGGTGGGAG+GGG | 0.526688 | 6.4:+887074 | None:intergenic |
| TTGTGCTCTTCCTCCGTCCA+CGG | 0.535860 | 6.4:+883799 | None:intergenic |
| GTTGGGGTCGGAATCAGCAC+TGG | 0.537404 | 6.4:+886996 | None:intergenic |
| TTGTATCACCACCATAATCC+TGG | 0.544769 | 6.4:-887045 | MS.gene74411:CDS |
| CTGGTGGGAGGGGTCGATGG+TGG | 0.545860 | 6.4:+887084 | None:intergenic |
| GGATTGCAGAAAGTTGGAAA+AGG | 0.553347 | 6.4:-883763 | MS.gene74411:CDS |
| GTCGGAATCAGCACTGGCTA+CGG | 0.558548 | 6.4:+887002 | None:intergenic |
| CATGAATGTCAAAATTCTGA+AGG | 0.559473 | 6.4:+886311 | None:intergenic |
| GCCGAAAATGGTATCACCGA+TGG | 0.560525 | 6.4:-886359 | MS.gene74411:CDS |
| TGGATCAGGGATTCCGTGGA+CGG | 0.564976 | 6.4:-883812 | MS.gene74411:intron |
| CCTAAGCAAGAAGAAAGGGT+TGG | 0.567270 | 6.4:+886978 | None:intergenic |
| TGGATCTACGGCGACGGCGA+CGG | 0.567848 | 6.4:+883638 | None:intergenic |
| AATCAGCACTGGCTACGGAT+AGG | 0.577973 | 6.4:+887007 | None:intergenic |
| TATCATAGAGACTGGATCTA+CGG | 0.592657 | 6.4:+883626 | None:intergenic |
| CGGAGCCTGATGGATTCTGG+TGG | 0.603248 | 6.4:+887068 | None:intergenic |
| GGCTACGGATAGGCCATAGT+TGG | 0.604556 | 6.4:+887017 | None:intergenic |
| CTATGATATCACCACTGACA+CGG | 0.608553 | 6.4:-883611 | MS.gene74411:CDS |
| GTTGGAAAAGGTGATAGGAG+AGG | 0.613085 | 6.4:-883751 | MS.gene74411:CDS |
| GGTGATACAACGGAGCCTGA+TGG | 0.616709 | 6.4:+887058 | None:intergenic |
| GCATGACTTGCAACCTGCGT+AGG | 0.620867 | 6.4:+883697 | None:intergenic |
| GTGATAGGAGAGGAATCTCA+AGG | 0.624002 | 6.4:-883741 | MS.gene74411:CDS |
| CAAGAAGAAAGGGTTGGGGT+CGG | 0.627588 | 6.4:+886984 | None:intergenic |
| TGAATGGATCAGGGATTCCG+TGG | 0.629323 | 6.4:-883816 | MS.gene74411:intron |
| GAAAACAAGAACGCCTACGC+AGG | 0.639644 | 6.4:-883710 | MS.gene74411:CDS |
| GGAGCCTGATGGATTCTGGT+GGG | 0.650786 | 6.4:+887069 | None:intergenic |
| GGATTATGGTGGTGATACAA+CGG | 0.651325 | 6.4:+887048 | None:intergenic |
| GACGGCGATTGAGATTACTT+CGG | 0.656018 | 6.4:+883656 | None:intergenic |
| ATCAGGGATTCCGTGGACGG+AGG | 0.665588 | 6.4:-883809 | MS.gene74411:intron |
| TAAGCAAGAAGAAAGGGTTG+GGG | 0.688258 | 6.4:+886980 | None:intergenic |
| AGAGACTGGATCTACGGCGA+CGG | 0.700084 | 6.4:+883632 | None:intergenic |
| TGGTGCCGCCAGGATTATGG+TGG | 0.711760 | 6.4:+887037 | None:intergenic |
| TATCACCACCATAATCCTGG+CGG | 0.754441 | 6.4:-887042 | MS.gene74411:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAAACTAATAACATT+TGG | + | chr6.4:885800-885819 | None:intergenic | 10.0% |
| !! | AATTAAAACTAATAACATTT+GGG | + | chr6.4:885799-885818 | None:intergenic | 10.0% |
| !! | ATTTACAAAAGAATAATAAA+AGG | + | chr6.4:885738-885757 | None:intergenic | 10.0% |
| !!! | AAATGTTATTAGTTTTAATT+TGG | - | chr6.4:885799-885818 | MS.gene74411:intron | 10.0% |
| !!! | ATTTTAATTGAAAAAACATT+AGG | + | chr6.4:883731-883750 | None:intergenic | 10.0% |
| !!! | TAAATTTTAAATCATATAGA+TGG | - | chr6.4:885753-885772 | MS.gene74411:intron | 10.0% |
| !! | AAAATCAATAATCAAAAGAA+AGG | + | chr6.4:884972-884991 | None:intergenic | 15.0% |
| !! | AAATATATAATGTTCAGAAA+AGG | + | chr6.4:884784-884803 | None:intergenic | 15.0% |
| !! | AAATCAATAATCAAAAGAAA+GGG | + | chr6.4:884971-884990 | None:intergenic | 15.0% |
| !!! | AGACTTTTGATTATTATATT+AGG | - | chr6.4:885005-885024 | MS.gene74411:intron | 15.0% |
| !!! | GATTTTAATTAGTTATTTCA+AGG | - | chr6.4:883803-883822 | MS.gene74411:CDS | 15.0% |
| !!! | TATAACTTATCAATGATTTT+AGG | - | chr6.4:885312-885331 | MS.gene74411:intron | 15.0% |
| !! | AAAAATAAAATAAGGTGAGA+TGG | + | chr6.4:884243-884262 | None:intergenic | 20.0% |
| !! | AAAGCAAAAATGAAGTAATT+AGG | + | chr6.4:884642-884661 | None:intergenic | 20.0% |
| !! | AAATACGATAAAAATAGATG+AGG | + | chr6.4:884450-884469 | None:intergenic | 20.0% |
| !! | AAATGTGAAATTATCCATAT+GGG | - | chr6.4:883899-883918 | MS.gene74411:intron | 20.0% |
| !! | AACAAATTTCTCACAAAATT+CGG | + | chr6.4:885215-885234 | None:intergenic | 20.0% |
| !! | AAGCAAAAATGAAGTAATTA+GGG | + | chr6.4:884641-884660 | None:intergenic | 20.0% |
| !! | ATTTCAATCAATTCAAACAA+AGG | + | chr6.4:886812-886831 | None:intergenic | 20.0% |
| !! | ATTTCTAAACTTAATCAATG+TGG | + | chr6.4:886676-886695 | None:intergenic | 20.0% |
| !! | GATTATTATATTAGGTAACT+TGG | - | chr6.4:885013-885032 | MS.gene74411:intron | 20.0% |
| !! | GTGCTGAAAAAAATAAAATA+AGG | + | chr6.4:884251-884270 | None:intergenic | 20.0% |
| !! | TACTAAAGTAGAAATTATTC+AGG | - | chr6.4:886579-886598 | MS.gene74411:intron | 20.0% |
| !! | TAGTTGTAAAATGAAAAACA+CGG | + | chr6.4:884040-884059 | None:intergenic | 20.0% |
| !! | TTAAAATTCTTCATCTTATC+TGG | - | chr6.4:883744-883763 | MS.gene74411:CDS | 20.0% |
| !!! | AAACAAATTTTACAACCTTT+TGG | - | chr6.4:886045-886064 | MS.gene74411:intron | 20.0% |
| !!! | AAAGTAAGTACAATTTTAAC+TGG | + | chr6.4:884400-884419 | None:intergenic | 20.0% |
| !!! | AAGTAAGTACAATTTTAACT+GGG | + | chr6.4:884399-884418 | None:intergenic | 20.0% |
| !!! | ATTTTGTGAGAAATTTGTTA+TGG | - | chr6.4:885216-885235 | MS.gene74411:intron | 20.0% |
| !!! | GTTTTTTTTGTACAGTTTTA+AGG | + | chr6.4:884845-884864 | None:intergenic | 20.0% |
| !!! | TATCGTATTTCTTATTTTAC+AGG | - | chr6.4:884460-884479 | MS.gene74411:intron | 20.0% |
| !!! | TATTTGAAGTCAAAATTTTG+AGG | - | chr6.4:886455-886474 | MS.gene74411:intron | 20.0% |
| !!! | TGCAATAATTATTTTCAGAT+AGG | + | chr6.4:884209-884228 | None:intergenic | 20.0% |
| !!! | TGTTATTGATTTTCTTTGAA+TGG | - | chr6.4:886846-886865 | MS.gene74411:intron | 20.0% |
| !!! | TTACTTTTTTGTAGTTCTAA+AGG | - | chr6.4:884413-884432 | MS.gene74411:intron | 20.0% |
| !!! | TTTTGTGAGAAATTTGTTAT+GGG | - | chr6.4:885217-885236 | MS.gene74411:intron | 20.0% |
| !!! | TTTTTAGATGATCATATCAT+AGG | - | chr6.4:883993-884012 | MS.gene74411:intron | 20.0% |
| ! | AAATAGTTCCAAGTTATCAA+AGG | + | chr6.4:884709-884728 | None:intergenic | 25.0% |
| ! | AAATCATTGTATTCAATAGC+AGG | + | chr6.4:885424-885443 | None:intergenic | 25.0% |
| ! | AAGCTTAAAAGTTGTTGAAA+AGG | - | chr6.4:884545-884564 | MS.gene74411:intron | 25.0% |
| ! | ACTCTTATTCATAGTAAAGT+AGG | - | chr6.4:886160-886179 | MS.gene74411:intron | 25.0% |
| ! | AGAAAAAATAGGTGAAATTG+AGG | + | chr6.4:884881-884900 | None:intergenic | 25.0% |
| ! | ATAATCAAAAGAAAGGGAAA+TGG | + | chr6.4:884965-884984 | None:intergenic | 25.0% |
| ! | ATAATTCCCTCATAAAATTG+TGG | + | chr6.4:885267-885286 | None:intergenic | 25.0% |
| ! | ATAATTGAAGTTTGACCAAA+AGG | + | chr6.4:886334-886353 | None:intergenic | 25.0% |
| ! | ATCAAGAATTATTACTCGAA+AGG | + | chr6.4:884942-884961 | None:intergenic | 25.0% |
| ! | CAGTAGTAAAAAGAATTCTA+TGG | - | chr6.4:884294-884313 | MS.gene74411:intron | 25.0% |
| ! | CATTAATTGTCTAGAGAAAA+GGG | + | chr6.4:886362-886381 | None:intergenic | 25.0% |
| ! | GAAATGTGAAATTATCCATA+TGG | - | chr6.4:883898-883917 | MS.gene74411:intron | 25.0% |
| ! | GAATCTTTCACAGAAAAAAT+AGG | + | chr6.4:884892-884911 | None:intergenic | 25.0% |
| ! | GCTATGTAATTTATAGCTTT+AGG | - | chr6.4:886531-886550 | MS.gene74411:intron | 25.0% |
| ! | TAAAGAACATGTTATCCAAA+GGG | + | chr6.4:886230-886249 | None:intergenic | 25.0% |
| ! | TAAAGAACATGTTATGCAAA+GGG | + | chr6.4:885960-885979 | None:intergenic | 25.0% |
| ! | TAGTAAAAAGAATTCTATGG+TGG | - | chr6.4:884297-884316 | MS.gene74411:intron | 25.0% |
| ! | TCAAGAATTATTACTCGAAA+GGG | + | chr6.4:884941-884960 | None:intergenic | 25.0% |
| ! | TCCAAAATAGAACATATAGT+CGG | + | chr6.4:885484-885503 | None:intergenic | 25.0% |
| ! | TTAAGTTTAGAAATTCTTGC+AGG | - | chr6.4:886682-886701 | MS.gene74411:intron | 25.0% |
| !! | ACAAGTATTTAGTTTACACT+TGG | - | chr6.4:884151-884170 | MS.gene74411:intron | 25.0% |
| !! | ATAGGTATTTTTCTAACCAA+AGG | - | chr6.4:884751-884770 | MS.gene74411:intron | 25.0% |
| !! | ATGTTCATGTTTTACAAATC+AGG | - | chr6.4:885987-886006 | MS.gene74411:intron | 25.0% |
| !! | GATAACTTGGAACTATTTTA+AGG | - | chr6.4:884711-884730 | MS.gene74411:intron | 25.0% |
| !! | GTTGATTTCAAACATTTGAT+AGG | - | chr6.4:884733-884752 | MS.gene74411:intron | 25.0% |
| !! | TATTTGAAGTCAAAACTTTG+AGG | - | chr6.4:886196-886215 | MS.gene74411:intron | 25.0% |
| !! | TGTTCATGTTTTACAAATCA+GGG | - | chr6.4:885988-886007 | MS.gene74411:intron | 25.0% |
| !! | TTCAACAACTTTTAAGCTTT+TGG | + | chr6.4:884544-884563 | None:intergenic | 25.0% |
| !!! | ACAACTAATTGTTTTATGCT+AGG | - | chr6.4:884053-884072 | MS.gene74411:intron | 25.0% |
| !!! | GCAACTGTTTTAATTTTTTC+AGG | - | chr6.4:886747-886766 | MS.gene74411:intron | 25.0% |
| !!! | GTATTTCTTATTTTACAGGT+AGG | - | chr6.4:884464-884483 | MS.gene74411:intron | 25.0% |
| !!! | TTATTTTTTTCAGCACATCA+TGG | - | chr6.4:884255-884274 | MS.gene74411:intron | 25.0% |
| !!! | TTTCATCATTTTAGTGACAA+TGG | - | chr6.4:885441-885460 | MS.gene74411:intron | 25.0% |
| AATAAAATAAGGTGAGATGG+TGG | + | chr6.4:884240-884259 | None:intergenic | 30.0% | |
| AATATGAGTCATTCCAGAAT+AGG | + | chr6.4:886483-886502 | None:intergenic | 30.0% | |
| ACCATTAATTGTCTAGAGAA+AGG | + | chr6.4:886092-886111 | None:intergenic | 30.0% | |
| AGGAATCTTTCACAAAATTG+AGG | + | chr6.4:884914-884933 | None:intergenic | 30.0% | |
| ATAATTGAAGTTCGACCAAA+AGG | + | chr6.4:886063-886082 | None:intergenic | 30.0% | |
| ATGACTCATATTGTAACAGA+TGG | - | chr6.4:886491-886510 | MS.gene74411:intron | 30.0% | |
| CAAGAATTATTACTCGAAAG+GGG | + | chr6.4:884940-884959 | None:intergenic | 30.0% | |
| CAGAAAAGGAAAAATACCTT+TGG | + | chr6.4:884770-884789 | None:intergenic | 30.0% | |
| CATGAATGTCAAAATTCTGA+AGG | + | chr6.4:884370-884389 | None:intergenic | 30.0% | |
| CCATTAATTGTCTAGAGAAA+AGG | + | chr6.4:886091-886110 | None:intergenic | 30.0% | |
| CCATTAATTGTCTAGAGAAA+GGG | + | chr6.4:886091-886110 | None:intergenic | 30.0% | |
| GAGGGAATTATACTTTCTTT+AGG | - | chr6.4:885276-885295 | MS.gene74411:intron | 30.0% | |
| GATATTACTCTACACTGATA+TGG | - | chr6.4:884078-884097 | MS.gene74411:intron | 30.0% | |
| GTAAAGAACATGTTATCCAA+AGG | + | chr6.4:886231-886250 | None:intergenic | 30.0% | |
| GTAAAGAACATGTTATGCAA+AGG | + | chr6.4:885961-885980 | None:intergenic | 30.0% | |
| TAAACCTAAGCAAGAAGAAA+GGG | + | chr6.4:883707-883726 | None:intergenic | 30.0% | |
| TAAACTTCAGATATGACACA+TGG | - | chr6.4:884510-884529 | MS.gene74411:intron | 30.0% | |
| TCAGATTTGACTATTCATGT+TGG | - | chr6.4:884661-884680 | MS.gene74411:intron | 30.0% | |
| TCTTGAAAATCTTGACACAA+TGG | + | chr6.4:885362-885381 | None:intergenic | 30.0% | |
| TTAAACCTAAGCAAGAAGAA+AGG | + | chr6.4:883708-883727 | None:intergenic | 30.0% | |
| TTACAGGTAGGTGTTTATTA+AGG | - | chr6.4:884476-884495 | MS.gene74411:intron | 30.0% | |
| TTGACTATTCATGTTGGATT+TGG | - | chr6.4:884667-884686 | MS.gene74411:intron | 30.0% | |
| TTTCACAACCTGTAAATAAG+AGG | + | chr6.4:883882-883901 | None:intergenic | 30.0% | |
| ! | ACCGACTATATGTTCTATTT+TGG | - | chr6.4:885480-885499 | MS.gene74411:intron | 30.0% |
| ! | CCTTTTCTCTAGACAATTAA+TGG | - | chr6.4:886360-886379 | MS.gene74411:CDS | 30.0% |
| ! | GATTTTCTTTGAATGGATCA+GGG | - | chr6.4:886853-886872 | MS.gene74411:intron | 30.0% |
| ! | TATTTTCAGATAGGCATATG+CGG | + | chr6.4:884200-884219 | None:intergenic | 30.0% |
| ! | TGATTTTCTTTGAATGGATC+AGG | - | chr6.4:886852-886871 | MS.gene74411:intron | 30.0% |
| ! | TGGTTTATCCTTTGATAACT+TGG | - | chr6.4:884698-884717 | MS.gene74411:intron | 30.0% |
| !! | CTTCAGAATTTTGACATTCA+TGG | - | chr6.4:884368-884387 | MS.gene74411:intron | 30.0% |
| !! | GTGTTTTTCCTCTTATTTAC+AGG | - | chr6.4:883871-883890 | MS.gene74411:intron | 30.0% |
| !! | TCTTTAAGTCATGTTGACTT+AGG | - | chr6.4:885507-885526 | MS.gene74411:intron | 30.0% |
| !!! | AGGTTTTAATTTTACGCAGT+TGG | - | chr6.4:886702-886721 | MS.gene74411:intron | 30.0% |
| !!! | AGTGTTAGTAATGTTTTGAC+AGG | - | chr6.4:885241-885260 | MS.gene74411:intron | 30.0% |
| !!! | TGAAGCTTCTATACTTTTTC+AGG | - | chr6.4:883931-883950 | MS.gene74411:intron | 30.0% |
| AAGTTTAATCCCACTCAATG+TGG | + | chr6.4:886650-886669 | None:intergenic | 35.0% | |
| ACATGTTATCCAAAGGGAAT+AGG | + | chr6.4:886224-886243 | None:intergenic | 35.0% | |
| AGAAAGTTGGAAAAGGTGAT+AGG | - | chr6.4:886922-886941 | MS.gene74411:intron | 35.0% | |
| AGTAAAGTAGGAAATTCTGC+AGG | - | chr6.4:886172-886191 | MS.gene74411:intron | 35.0% | |
| CACCATTAAACTCGATATAG+AGG | + | chr6.4:884119-884138 | None:intergenic | 35.0% | |
| CCCTTTCTCTAGACAATTAA+TGG | - | chr6.4:886088-886107 | MS.gene74411:intron | 35.0% | |
| CCTCAAAGTTTCAAGCATTT+GGG | + | chr6.4:886139-886158 | None:intergenic | 35.0% | |
| CTTTAAGTCATGTTCTGCTT+TGG | - | chr6.4:885536-885555 | MS.gene74411:intron | 35.0% | |
| TATCATAGAGACTGGATCTA+CGG | + | chr6.4:887055-887074 | None:intergenic | 35.0% | |
| TATGTGAGTAGATTGAACTC+TGG | - | chr6.4:884595-884614 | MS.gene74411:intron | 35.0% | |
| TCCTCAAAGTTTCAAGCATT+TGG | + | chr6.4:886140-886159 | None:intergenic | 35.0% | |
| TGCCTCTATATCGAGTTTAA+TGG | - | chr6.4:884114-884133 | MS.gene74411:intron | 35.0% | |
| ! | AACTGTGATTTTGCTTACCA+TGG | - | chr6.4:885874-885893 | MS.gene74411:intron | 35.0% |
| ! | CTTTCACTCATGTTCTGTTT+TGG | - | chr6.4:885564-885583 | MS.gene74411:intron | 35.0% |
| ! | GATTTTGCTTACCATGGAAT+TGG | - | chr6.4:885880-885899 | MS.gene74411:intron | 35.0% |
| ! | TGTTGGATTTGGAATGTGAT+TGG | - | chr6.4:884678-884697 | MS.gene74411:intron | 35.0% |
| !! | AAATTTTGAGGAGCCTATTC+TGG | - | chr6.4:886467-886486 | MS.gene74411:intron | 35.0% |
| !! | CCTCAAATTTTCAAGCACTT+GGG | + | chr6.4:886398-886417 | None:intergenic | 35.0% |
| !! | GAATTTTGACATTCATGGTG+AGG | - | chr6.4:884373-884392 | MS.gene74411:intron | 35.0% |
| !! | TCCTCAAATTTTCAAGCACT+TGG | + | chr6.4:886399-886418 | None:intergenic | 35.0% |
| !! | TGAGCTACTGCTTATTTTTC+AGG | - | chr6.4:884803-884822 | MS.gene74411:intron | 35.0% |
| !!! | CTTCTATACTTTTTCAGGTG+AGG | - | chr6.4:883936-883955 | MS.gene74411:intron | 35.0% |
| AATTCTATGGTGGCCGAAAA+TGG | - | chr6.4:884307-884326 | MS.gene74411:intron | 40.0% | |
| AATTGGCATTCTACAACTGC+CGG | - | chr6.4:885897-885916 | MS.gene74411:intron | 40.0% | |
| ACAACTGCTCTTAGTTCATC+GGG | + | chr6.4:884347-884366 | None:intergenic | 40.0% | |
| AGTGGTGATATCATAGAGAC+TGG | + | chr6.4:887063-887082 | None:intergenic | 40.0% | |
| CAATCTACTCACATACACAG+TGG | + | chr6.4:884590-884609 | None:intergenic | 40.0% | |
| CAGAAAAATTACCGTGTCAG+TGG | + | chr6.4:887081-887100 | None:intergenic | 40.0% | |
| CCCAAATGCTTGAAACTTTG+AGG | - | chr6.4:886136-886155 | MS.gene74411:intron | 40.0% | |
| CCCAAGTGCTTGAAAATTTG+AGG | - | chr6.4:886395-886414 | MS.gene74411:CDS | 40.0% | |
| CTAAGCAAGAAGAAAGGGTT+GGG | + | chr6.4:883702-883721 | None:intergenic | 40.0% | |
| CTATGATATCACCACTGACA+CGG | - | chr6.4:887067-887086 | MS.gene74411:CDS | 40.0% | |
| CTTCAAACTTGACTCCCATA+TGG | + | chr6.4:883916-883935 | None:intergenic | 40.0% | |
| GACAACTGCTCTTAGTTCAT+CGG | + | chr6.4:884348-884367 | None:intergenic | 40.0% | |
| GCCATGAAAATGTGAAGAGA+GGG | + | chr6.4:885640-885659 | None:intergenic | 40.0% | |
| GGATTGCAGAAAGTTGGAAA+AGG | - | chr6.4:886915-886934 | MS.gene74411:intron | 40.0% | |
| GTTGTAGAATGCCAATTCCA+TGG | + | chr6.4:885894-885913 | None:intergenic | 40.0% | |
| TAAGCAAGAAGAAAGGGTTG+GGG | + | chr6.4:883701-883720 | None:intergenic | 40.0% | |
| TGCCATGAAAATGTGAAGAG+AGG | + | chr6.4:885641-885660 | None:intergenic | 40.0% | |
| TTATTACTCGAAAGGGGTTG+AGG | + | chr6.4:884934-884953 | None:intergenic | 40.0% | |
| TTGGTTGGATTGCAGAAAGT+TGG | - | chr6.4:886909-886928 | MS.gene74411:intron | 40.0% | |
| TTGTATCACCACCATAATCC+TGG | - | chr6.4:883633-883652 | MS.gene74411:CDS | 40.0% | |
| ! | AAACTTGCTCCACATTGAGT+GGG | - | chr6.4:886638-886657 | MS.gene74411:intron | 40.0% |
| ! | CACTGACACGGTAATTTTTC+TGG | - | chr6.4:887079-887098 | MS.gene74411:CDS | 40.0% |
| ! | GACAGGCCACAATTTTATGA+GGG | - | chr6.4:885258-885277 | MS.gene74411:intron | 40.0% |
| ! | GGATTATGGTGGTGATACAA+CGG | + | chr6.4:883633-883652 | None:intergenic | 40.0% |
| ! | TAAACTTGCTCCACATTGAG+TGG | - | chr6.4:886637-886656 | MS.gene74411:intron | 40.0% |
| ! | TCCATCGGTGATACCATTTT+CGG | + | chr6.4:884323-884342 | None:intergenic | 40.0% |
| ! | TCCCTCTCTTCACATTTTCA+TGG | - | chr6.4:885636-885655 | MS.gene74411:intron | 40.0% |
| ! | TGACAGGCCACAATTTTATG+AGG | - | chr6.4:885257-885276 | MS.gene74411:intron | 40.0% |
| !! | GGAAGAGCACAAGATGTTTT+TGG | - | chr6.4:886890-886909 | MS.gene74411:intron | 40.0% |
| !!! | GAGCACAAGATGTTTTTGGT+TGG | - | chr6.4:886894-886913 | MS.gene74411:intron | 40.0% |
| AGAAATCCTGCAGCTGTTGT+GGG | - | chr6.4:886612-886631 | MS.gene74411:intron | 45.0% | |
| CCAACCCTTTCTTCTTGCTT+AGG | - | chr6.4:883700-883719 | MS.gene74411:CDS | 45.0% | |
| CCTAAGCAAGAAGAAAGGGT+TGG | + | chr6.4:883703-883722 | None:intergenic | 45.0% | |
| GACGGCGATTGAGATTACTT+CGG | + | chr6.4:887025-887044 | None:intergenic | 45.0% | |
| GTGATAGGAGAGGAATCTCA+AGG | - | chr6.4:886937-886956 | MS.gene74411:intron | 45.0% | |
| GTTGGAAAAGGTGATAGGAG+AGG | - | chr6.4:886927-886946 | MS.gene74411:intron | 45.0% | |
| TAGAAATCCTGCAGCTGTTG+TGG | - | chr6.4:886611-886630 | MS.gene74411:intron | 45.0% | |
| TAGGGATAGGCTCATAGACT+AGG | - | chr6.4:885920-885939 | MS.gene74411:intron | 45.0% | |
| TATCACCACCATAATCCTGG+CGG | - | chr6.4:883636-883655 | MS.gene74411:CDS | 45.0% | |
| TTTAATCCCACAACAGCTGC+AGG | + | chr6.4:886621-886640 | None:intergenic | 45.0% | |
| TTTGAGGAGCCTATTCCCTT+TGG | - | chr6.4:886212-886231 | MS.gene74411:intron | 45.0% | |
| !!! | ATATAATAAACATTAAATTT+TGG | + | chr6.4:885152-885171 | None:intergenic | 5.0% |
| !!! | ATTTAGTTTTATAAAAAAAA+CGG | + | chr6.4:885714-885733 | None:intergenic | 5.0% |
| CAAGAAGAAAGGGTTGGGGT+CGG | + | chr6.4:883697-883716 | None:intergenic | 50.0% | |
| CTTAGTTCATCGGGCTCCAT+CGG | + | chr6.4:884338-884357 | None:intergenic | 50.0% | |
| GAAAACAAGAACGCCTACGC+AGG | - | chr6.4:886968-886987 | MS.gene74411:intron | 50.0% | |
| GCATTCTACAACTGCCGGTA+GGG | - | chr6.4:885902-885921 | MS.gene74411:intron | 50.0% | |
| GCCGAAAATGGTATCACCGA+TGG | - | chr6.4:884319-884338 | MS.gene74411:intron | 50.0% | |
| GGGAAAGCTCTCGATTACTG+TGG | + | chr6.4:885620-885639 | None:intergenic | 50.0% | |
| GTCTATGAGCCTATCCCTAC+CGG | + | chr6.4:885919-885938 | None:intergenic | 50.0% | |
| TGAATGGATCAGGGATTCCG+TGG | - | chr6.4:886862-886881 | MS.gene74411:intron | 50.0% | |
| !! | AATCAGCACTGGCTACGGAT+AGG | + | chr6.4:883674-883693 | None:intergenic | 50.0% |
| AATCCTGGCGGCACCAACTA+TGG | - | chr6.4:883648-883667 | MS.gene74411:CDS | 55.0% | |
| AGAGACTGGATCTACGGCGA+CGG | + | chr6.4:887049-887068 | None:intergenic | 55.0% | |
| CTACAACTGCCGGTAGGGAT+AGG | - | chr6.4:885907-885926 | MS.gene74411:intron | 55.0% | |
| GGCATTCTACAACTGCCGGT+AGG | - | chr6.4:885901-885920 | MS.gene74411:intron | 55.0% | |
| GGCTACGGATAGGCCATAGT+TGG | + | chr6.4:883664-883683 | None:intergenic | 55.0% | |
| GGTGATACAACGGAGCCTGA+TGG | + | chr6.4:883623-883642 | None:intergenic | 55.0% | |
| TGGATCAGGGATTCCGTGGA+CGG | - | chr6.4:886866-886885 | MS.gene74411:intron | 55.0% | |
| TTGTGCTCTTCCTCCGTCCA+CGG | + | chr6.4:886882-886901 | None:intergenic | 55.0% | |
| ! | GCATGACTTGCAACCTGCGT+AGG | + | chr6.4:886984-887003 | None:intergenic | 55.0% |
| !! | AGTTGGTGCCGCCAGGATTA+TGG | + | chr6.4:883647-883666 | None:intergenic | 55.0% |
| !! | CAACGGAGCCTGATGGATTC+TGG | + | chr6.4:883616-883635 | None:intergenic | 55.0% |
| !! | CCTGATGGATTCTGGTGGGA+GGG | + | chr6.4:883608-883627 | None:intergenic | 55.0% |
| !! | CTGATGGATTCTGGTGGGAG+GGG | + | chr6.4:883607-883626 | None:intergenic | 55.0% |
| !! | GGAGCCTGATGGATTCTGGT+GGG | + | chr6.4:883612-883631 | None:intergenic | 55.0% |
| !! | GTCGGAATCAGCACTGGCTA+CGG | + | chr6.4:883679-883698 | None:intergenic | 55.0% |
| ATCAGGGATTCCGTGGACGG+AGG | - | chr6.4:886869-886888 | MS.gene74411:intron | 60.0% | |
| ATTCTGGTGGGAGGGGTCGA+TGG | + | chr6.4:883600-883619 | None:intergenic | 60.0% | |
| CCCTCCCACCAGAATCCATC+AGG | - | chr6.4:883605-883624 | MS.gene74411:CDS | 60.0% | |
| GTTGGGGTCGGAATCAGCAC+TGG | + | chr6.4:883685-883704 | None:intergenic | 60.0% | |
| !! | CGGAGCCTGATGGATTCTGG+TGG | + | chr6.4:883613-883632 | None:intergenic | 60.0% |
| !! | GCCTGATGGATTCTGGTGGG+AGG | + | chr6.4:883609-883628 | None:intergenic | 60.0% |
| !! | TGGTGCCGCCAGGATTATGG+TGG | + | chr6.4:883644-883663 | None:intergenic | 60.0% |
| TGGATCTACGGCGACGGCGA+CGG | + | chr6.4:887043-887062 | None:intergenic | 65.0% | |
| ! | GGAGGGGTCGATGGTGGCAT+TGG | + | chr6.4:883591-883610 | None:intergenic | 65.0% |
| !! | AGGCCATAGTTGGTGCCGCC+AGG | + | chr6.4:883654-883673 | None:intergenic | 65.0% |
| CTGGTGGGAGGGGTCGATGG+TGG | + | chr6.4:883597-883616 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 883585 | 887115 | 883585 | ID=MS.gene74411 |
| chr6.4 | mRNA | 883585 | 887115 | 883585 | ID=MS.gene74411.t1;Parent=MS.gene74411 |
| chr6.4 | exon | 886979 | 887115 | 886979 | ID=MS.gene74411.t1.exon1;Parent=MS.gene74411.t1 |
| chr6.4 | CDS | 886979 | 887115 | 886979 | ID=cds.MS.gene74411.t1;Parent=MS.gene74411.t1 |
| chr6.4 | exon | 886311 | 886432 | 886311 | ID=MS.gene74411.t1.exon2;Parent=MS.gene74411.t1 |
| chr6.4 | CDS | 886311 | 886432 | 886311 | ID=cds.MS.gene74411.t1;Parent=MS.gene74411.t1 |
| chr6.4 | exon | 883585 | 883826 | 883585 | ID=MS.gene74411.t1.exon3;Parent=MS.gene74411.t1 |
| chr6.4 | CDS | 883585 | 883826 | 883585 | ID=cds.MS.gene74411.t1;Parent=MS.gene74411.t1 |
| Gene Sequence |
| Protein sequence |
