AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74611

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74611.t1 MTR_6g051425 28.743 334 200 8 38 343 1 324 4.68e-33 130
MS.gene74611.t1 MTR_4g067290 35.644 101 62 1 64 161 56 156 1.58e-14 73.9
MS.gene74611.t1 MTR_4g067290 35.644 101 62 1 64 161 56 156 1.58e-14 73.9
MS.gene74611.t1 MTR_4g067290 35.644 101 62 1 64 161 76 176 2.01e-14 74.3
MS.gene74611.t1 MTR_4g067290 35.644 101 62 1 64 161 74 174 2.03e-14 74.3
MS.gene74611.t1 MTR_4g067290 35.644 101 62 1 64 161 76 176 2.04e-14 74.3
MS.gene74611.t1 MTR_4g067290 35.644 101 62 1 64 161 116 216 4.45e-14 73.9
MS.gene74611.t1 MTR_2g098880 36.792 106 57 2 64 161 61 164 5.73e-13 69.7
MS.gene74611.t1 MTR_2g098880 36.792 106 57 2 64 161 73 176 6.37e-13 70.1
MS.gene74611.t1 MTR_2g098920 35.644 101 62 1 64 161 80 180 6.73e-13 69.7
MS.gene74611.t1 MTR_7g446520 26.160 237 157 6 68 299 92 315 1.14e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74611.t1 AT1G52520 63.116 629 219 6 58 681 79 699 0.0 855
MS.gene74611.t1 AT1G80010 47.476 634 312 9 62 680 93 720 0.0 582
MS.gene74611.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene74611.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene74611.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene74611.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene74611.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene74611.t1 AT3G22170 33.333 681 387 11 20 674 29 668 2.45e-117 371
MS.gene74611.t1 AT3G22170 33.333 681 387 11 20 674 29 668 2.45e-117 371
MS.gene74611.t1 AT1G76320 35.135 629 356 13 68 676 1 597 7.52e-110 347
MS.gene74611.t1 AT1G76320 35.135 629 356 13 68 676 1 597 2.55e-109 347
MS.gene74611.t1 AT1G76320 35.135 629 356 13 68 676 1 597 2.82e-109 347
MS.gene74611.t1 AT1G76320 35.135 629 356 13 68 676 1 597 2.82e-109 347
MS.gene74611.t1 AT4G19990 34.272 604 332 9 38 621 1 559 1.16e-102 330
MS.gene74611.t1 AT4G19990 34.272 604 332 9 38 621 1 559 1.16e-102 330
MS.gene74611.t1 AT4G19990 34.272 604 332 9 38 621 1 559 2.43e-102 329
MS.gene74611.t1 AT4G19990 34.272 604 332 9 38 621 1 559 2.57e-102 330
MS.gene74611.t1 AT4G19990 34.272 604 332 9 38 621 1 559 2.57e-102 330
MS.gene74611.t1 AT4G19990 34.443 601 329 9 41 621 18 573 3.62e-102 329
MS.gene74611.t1 AT4G38180 33.391 578 361 11 64 627 73 640 2.79e-100 325
MS.gene74611.t1 AT4G19990 35.673 513 287 7 114 621 28 502 8.13e-94 305
MS.gene74611.t1 AT2G27110 29.781 638 408 12 48 681 38 639 3.22e-91 302
MS.gene74611.t1 AT2G27110 29.781 638 408 12 48 681 38 639 3.22e-91 302
MS.gene74611.t1 AT3G06250 30.189 636 385 13 50 677 176 760 3.00e-89 295
MS.gene74611.t1 AT3G06250 32.692 104 61 1 64 167 28 122 2.35e-11 67.8
MS.gene74611.t1 AT3G06250 30.189 636 385 13 50 677 176 760 3.00e-89 295
MS.gene74611.t1 AT3G06250 32.692 104 61 1 64 167 28 122 2.35e-11 67.8
MS.gene74611.t1 AT3G06250 30.189 636 385 13 50 677 176 760 3.00e-89 295
MS.gene74611.t1 AT3G06250 32.692 104 61 1 64 167 28 122 2.35e-11 67.8
MS.gene74611.t1 AT5G18960 31.018 619 377 15 64 677 211 784 3.55e-87 290
MS.gene74611.t1 AT5G18960 31.018 619 377 15 64 677 211 784 3.55e-87 290
MS.gene74611.t1 AT2G27110 31.172 478 317 5 206 681 27 494 8.01e-82 274
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 180 550 4.72e-78 265
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 139 509 6.20e-78 265
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 139 509 7.42e-78 265
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.71e-78 265
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.71e-78 265
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.71e-78 265
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.98e-78 265
MS.gene74611.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.98e-78 265
MS.gene74611.t1 AT4G38170 31.180 449 291 8 234 677 21 456 3.13e-72 244
MS.gene74611.t1 AT1G10240 25.966 647 415 16 64 679 48 661 1.22e-54 199
MS.gene74611.t1 AT1G10240 25.966 647 415 16 64 679 48 661 1.22e-54 199
MS.gene74611.t1 AT5G28530 26.121 647 425 18 63 680 54 676 2.01e-47 178
MS.gene74611.t1 AT5G28530 25.966 647 422 18 63 680 54 672 7.18e-47 177
MS.gene74611.t1 AT5G28530 25.966 647 422 18 63 680 54 672 7.18e-47 177
MS.gene74611.t1 AT5G28530 28.312 385 246 11 303 680 252 613 1.12e-30 128
MS.gene74611.t1 AT5G28530 28.052 385 243 11 303 680 252 609 4.57e-30 126
MS.gene74611.t1 AT3G59470 37.624 101 60 1 64 161 70 170 2.92e-14 73.6
MS.gene74611.t1 AT3G59470 37.624 101 60 1 64 161 70 170 2.92e-14 73.6
MS.gene74611.t1 AT3G59470 37.624 101 60 1 64 161 82 182 3.42e-14 73.6

Find 118 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTTGAGGAATGTATTA+TGG 0.176053 2.3:-60697480 MS.gene74611:CDS
CATGGTCAATCTGTGTTATT+AGG 0.198497 2.3:-60697340 MS.gene74611:CDS
CGTCGACGGTGTCAAGCTTT+TGG 0.198914 2.3:+60698499 None:intergenic
CCCAGATCTCATCATTGTTT+TGG 0.201438 2.3:-60697175 MS.gene74611:CDS
CAATGGTCTAATCAGTTATT+TGG 0.205211 2.3:-60696335 MS.gene74611:CDS
GAAGAAATGTTCTCTTGTTT+TGG 0.291820 2.3:-60696668 MS.gene74611:CDS
TCCATCAAATAAAAGAAGTT+TGG 0.301368 2.3:+60697517 None:intergenic
AACTTGTCCTTTATGTATAC+TGG 0.304465 2.3:+60696947 None:intergenic
GAATTTCCCGCACCTGCTAT+TGG 0.315659 2.3:-60698075 MS.gene74611:CDS
CTGCAGTTCAAAAGAGCATT+TGG 0.320519 2.3:+60696742 None:intergenic
ACGACATAGGAAATTATAAA+TGG 0.326434 2.3:+60697555 None:intergenic
TTAGGTTGTGGGTTGCTTGC+AGG 0.332899 2.3:-60697322 MS.gene74611:CDS
TACATAAAGGACAAGTTTCT+TGG 0.335040 2.3:-60696941 MS.gene74611:CDS
AATGAACTCGGTCTTCATAT+AGG 0.339160 2.3:+60696975 None:intergenic
TGGAAGTGCCTTACAAGTTA+TGG 0.355565 2.3:-60696315 MS.gene74611:CDS
TGGCTCCATCATAATCTTCT+TGG 0.357834 2.3:-60696624 MS.gene74611:CDS
CACACAAAATCCCACCTCTT+TGG 0.362616 2.3:+60698002 None:intergenic
CATGGCAGGACAACCAGTTC+TGG 0.364832 2.3:+60697864 None:intergenic
CTCGAACATAACCACGTCTT+AGG 0.365078 2.3:-60697790 MS.gene74611:CDS
ACATTTGAGGAATGTATTAT+GGG 0.365589 2.3:-60697479 MS.gene74611:CDS
GCCAAAACAATGATGAGATC+TGG 0.365658 2.3:+60697174 None:intergenic
ATGAACTCGGTCTTCATATA+GGG 0.370282 2.3:+60696976 None:intergenic
TTCTCCTCAAACTATTATTA+CGG 0.379468 2.3:-60697239 MS.gene74611:CDS
CAATCTGTGTTATTAGGTTG+TGG 0.392493 2.3:-60697334 MS.gene74611:CDS
ATTGAAAGTGATTGAATTTG+AGG 0.404070 2.3:-60697056 MS.gene74611:CDS
GTTCAGACATACACCTTTGA+AGG 0.415617 2.3:-60696861 MS.gene74611:CDS
TTGATGGATTTCAATGATGA+AGG 0.429652 2.3:-60697502 MS.gene74611:CDS
ACATGGGTTACTTGTATGTC+AGG 0.436090 2.3:-60697265 MS.gene74611:CDS
ATTACCAGGCATTCTCCATC+GGG 0.447050 2.3:+60698138 None:intergenic
AAAATAACGACATGCAGCTT+TGG 0.449608 2.3:+60697444 None:intergenic
AATCTGTGTTATTAGGTTGT+GGG 0.451302 2.3:-60697333 MS.gene74611:CDS
TATATGAAGACCGAGTTCAT+TGG 0.452679 2.3:-60696973 MS.gene74611:CDS
GATTGAATTTGAGGCGGCAT+GGG 0.459082 2.3:-60697047 MS.gene74611:CDS
AGTTGTGATCAGGAATATAA+AGG 0.460169 2.3:+60696387 None:intergenic
CATGATAAGGATTAAGTTAG+TGG 0.463158 2.3:-60697845 MS.gene74611:CDS
TTGAGAAAAGAAACCAGAAC+TGG 0.466660 2.3:-60697877 MS.gene74611:CDS
ATATGAAGACCGAGTTCATT+GGG 0.473754 2.3:-60696972 MS.gene74611:CDS
AGCTCTGTCATCTGTTGCAT+TGG 0.476249 2.3:+60697627 None:intergenic
TTCTGCAATTGCACTTTGCA+AGG 0.480040 2.3:+60697204 None:intergenic
CTGGTTGTCCTGCCATGATA+AGG 0.483669 2.3:-60697858 MS.gene74611:CDS
CCAAAACAATGATGAGATCT+GGG 0.492319 2.3:+60697175 None:intergenic
GTGCTTTGTTGTAGCAGTCA+AGG 0.493576 2.3:-60697928 MS.gene74611:CDS
TCCCTCCTCCATAACTTGTA+AGG 0.494681 2.3:+60696307 None:intergenic
AAACGACCGAATCGTATTCA+TGG 0.494788 2.3:-60697297 MS.gene74611:CDS
TTTGACCAAGAAGATTATGA+TGG 0.497729 2.3:+60696619 None:intergenic
GAACTACCAGAGTTGTGATC+AGG 0.499730 2.3:+60696377 None:intergenic
TGTTCTTGTTCTTCTTCTTG+AGG 0.500286 2.3:+60698465 None:intergenic
ATGTATTATGGGTTGATGCC+AGG 0.501404 2.3:-60697468 MS.gene74611:CDS
TTTGATTGAGGGAAACAGAC+AGG 0.503735 2.3:-60696588 MS.gene74611:CDS
CATGAAGTTCCAACTTGAAG+TGG 0.504481 2.3:-60696690 MS.gene74611:CDS
GGACAAGTTTCTTGGTGGAA+TGG 0.506245 2.3:-60696933 MS.gene74611:CDS
TTGGGCACCAGTATACATAA+AGG 0.506630 2.3:-60696954 MS.gene74611:CDS
AATTACCAGGCATTCTCCAT+CGG 0.509978 2.3:+60698137 None:intergenic
AATAAGTTGAACCTAAGAAA+AGG 0.515686 2.3:-60697589 MS.gene74611:CDS
TGATTGAATTTGAGGCGGCA+TGG 0.516224 2.3:-60697048 MS.gene74611:CDS
ACATTTCTTCCACTTCAAGT+TGG 0.516480 2.3:+60696681 None:intergenic
AACTTAATCCTTATCATGGC+AGG 0.517948 2.3:+60697850 None:intergenic
TCCCGCACCTGCTATTGGAA+TGG 0.519960 2.3:-60698070 MS.gene74611:CDS
ACTGACGCGCTGCATCGTAA+TGG 0.520691 2.3:+60696270 None:intergenic
TTCATGGTTGTTTAGAACAT+GGG 0.523651 2.3:-60697281 MS.gene74611:CDS
GGGAAACAGACAGGAGATCA+AGG 0.525712 2.3:-60696579 MS.gene74611:CDS
GTTGCCTAGCTCTGATGCGG+AGG 0.527630 2.3:-60697713 MS.gene74611:CDS
ATGATATTGAACGTATTCAA+TGG 0.532271 2.3:-60696352 MS.gene74611:CDS
ATTCATGGTTGTTTAGAACA+TGG 0.534938 2.3:-60697282 MS.gene74611:CDS
TCCATTCCAATAGCAGGTGC+GGG 0.535063 2.3:+60698069 None:intergenic
TCAAATTCCATTCCAATAGC+AGG 0.535321 2.3:+60698063 None:intergenic
ATAAAGGACAAGTTTCTTGG+TGG 0.535782 2.3:-60696938 MS.gene74611:CDS
CACTAACTTAATCCTTATCA+TGG 0.537066 2.3:+60697846 None:intergenic
ATTACCCGATGGAGAATGCC+TGG 0.537097 2.3:-60698142 MS.gene74611:CDS
GTGATAGATACAGAAGGTAA+TGG 0.538353 2.3:-60697661 MS.gene74611:CDS
TTGCCTAGCTCTGATGCGGA+GGG 0.538891 2.3:-60697712 MS.gene74611:CDS
AAAGGACTAATGCTCTCACT+AGG 0.539421 2.3:+60696899 None:intergenic
TATATTCCTGATCACAACTC+TGG 0.540777 2.3:-60696383 MS.gene74611:CDS
TTCCATTCCAATAGCAGGTG+CGG 0.542397 2.3:+60698068 None:intergenic
TGCCTTACAAGTTATGGAGG+AGG 0.551483 2.3:-60696309 MS.gene74611:CDS
TGTCAAGATGATATTTCTGA+AGG 0.552931 2.3:-60698105 MS.gene74611:CDS
AAACAACCATGAATACGATT+CGG 0.553116 2.3:+60697291 None:intergenic
ACGACATGCAGCTTTGGACC+TGG 0.553268 2.3:+60697450 None:intergenic
TTCCCCTCCGCATCAGAGCT+AGG 0.562167 2.3:+60697709 None:intergenic
TCAATGATGAAGGACATTTG+AGG 0.564984 2.3:-60697492 MS.gene74611:CDS
ATTTGCTATGCCAAAGAGGT+GGG 0.566055 2.3:-60698012 MS.gene74611:CDS
ATCTCTTTATAAGAAGTACA+AGG 0.566116 2.3:-60696816 MS.gene74611:CDS
ACCACTCAACTACGTGCAGA+TGG 0.567203 2.3:-60696644 MS.gene74611:CDS
AGTTAGTGGAGTCTCAGAGA+TGG 0.573080 2.3:-60697831 MS.gene74611:CDS
TAGTTAGCTGCATACGACAT+AGG 0.573239 2.3:+60697542 None:intergenic
AGGTTGAGACTCGCCGTCGA+CGG 0.574630 2.3:+60698485 None:intergenic
TATTTGCTATGCCAAAGAGG+TGG 0.575475 2.3:-60698013 MS.gene74611:CDS
ATTCCAACAAAAGTCACAAG+AGG 0.580554 2.3:+60697370 None:intergenic
CTATCCGTAATAATAGTTTG+AGG 0.582240 2.3:+60697235 None:intergenic
TTGTCAAGAAAATCCTTCAA+AGG 0.587595 2.3:+60696848 None:intergenic
TAGTGGAGTCTCAGAGATGG+AGG 0.590281 2.3:-60697828 MS.gene74611:CDS
GCCTTACAAGTTATGGAGGA+GGG 0.592013 2.3:-60696308 MS.gene74611:CDS
GACAATCTAATTCAATTACC+AGG 0.596609 2.3:+60698124 None:intergenic
CACCGTGATAGAATGTACTT+AGG 0.598150 2.3:+60696428 None:intergenic
CGTGATAGAATGTACTTAGG+AGG 0.599389 2.3:+60696431 None:intergenic
ATACTGGTGCCCAATGAACT+CGG 0.607374 2.3:+60696963 None:intergenic
ATTGAATTTGAGGCGGCATG+GGG 0.607914 2.3:-60697046 MS.gene74611:CDS
TTATATTTGCTATGCCAAAG+AGG 0.610702 2.3:-60698016 MS.gene74611:CDS
CTCGTTGCCTAGCTCTGATG+CGG 0.616476 2.3:-60697716 MS.gene74611:CDS
GCCATCTGCACGTAGTTGAG+TGG 0.627400 2.3:+60696643 None:intergenic
TGCCTAGCTCTGATGCGGAG+GGG 0.628559 2.3:-60697711 MS.gene74611:CDS
CTCCTAAGTACATTCTATCA+CGG 0.629356 2.3:-60696430 MS.gene74611:CDS
AAGGACTAATGCTCTCACTA+GGG 0.629524 2.3:+60696900 None:intergenic
TTCATGATGTAAAACTTGAG+AGG 0.630957 2.3:-60696223 MS.gene74611:CDS
CAAAAGCTTGACACCGTCGA+CGG 0.630980 2.3:-60698498 MS.gene74611:CDS
AAGTGCCTTACAAGTTATGG+AGG 0.637921 2.3:-60696312 MS.gene74611:CDS
GTATCTTAGCACCTAAGACG+TGG 0.639364 2.3:+60697779 None:intergenic
TTTGTTGGAATAAATCACCA+TGG 0.640231 2.3:-60697358 MS.gene74611:CDS
AGAAGAACAAGAACACCCAA+AGG 0.641728 2.3:-60698457 MS.gene74611:intron
CTCAAACTATTATTACGGAT+AGG 0.645642 2.3:-60697234 MS.gene74611:CDS
GAAAGTGATTGAATTTGAGG+CGG 0.650309 2.3:-60697053 MS.gene74611:CDS
TTGAAGTTAGGGATAACGAG+TGG 0.652213 2.3:-60697006 MS.gene74611:CDS
CTAATAACACAGATTGACCA+TGG 0.669427 2.3:+60697341 None:intergenic
GCACTTGTGATAGATACAGA+AGG 0.672329 2.3:-60697667 MS.gene74611:CDS
TAAAGCAAGAACAAATACAA+CGG 0.685448 2.3:+60696519 None:intergenic
TCAGAGATGGAGGATATGTG+AGG 0.701673 2.3:-60697818 MS.gene74611:CDS
TGTTGTGATCAATTACCCGA+TGG 0.706322 2.3:-60698153 MS.gene74611:CDS
CTAAGTACATTCTATCACGG+TGG 0.712046 2.3:-60696427 MS.gene74611:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAAATTAGTTAAAAAGA+TGG - chr2.3:60696978-60696997 MS.gene74611:CDS 15.0%
!! ATGAAAAATTAATTACCTTT+GGG + chr2.3:60696297-60696316 None:intergenic 15.0%
!! TATGAAAAATTAATTACCTT+TGG + chr2.3:60696298-60696317 None:intergenic 15.0%
!! AACATGTATTTATCGAAAAA+AGG + chr2.3:60697858-60697877 None:intergenic 20.0%
!!! ATTTTTATGGATATCTATGT+CGG - chr2.3:60698240-60698259 MS.gene74611:intron 20.0%
!!! TGTTCTTGCTTTAATTTTTA+TGG - chr2.3:60698227-60698246 MS.gene74611:intron 20.0%
!!! TTTTGAAGAATCACTTAATA+AGG - chr2.3:60698490-60698509 MS.gene74611:CDS 20.0%
! ACATTTGAGGAATGTATTAT+GGG - chr2.3:60697257-60697276 MS.gene74611:CDS 25.0%
! ACGACATAGGAAATTATAAA+TGG + chr2.3:60697184-60697203 None:intergenic 25.0%
! ATGATATTGAACGTATTCAA+TGG - chr2.3:60698384-60698403 MS.gene74611:intron 25.0%
! ATTGAAAGTGATTGAATTTG+AGG - chr2.3:60697680-60697699 MS.gene74611:CDS 25.0%
! CGAAATAGCAAAGAAAAATA+TGG - chr2.3:60696781-60696800 MS.gene74611:CDS 25.0%
! CGTATCTAACTTATTTCAAA+TGG + chr2.3:60696391-60696410 None:intergenic 25.0%
! TAAAGCAAGAACAAATACAA+CGG + chr2.3:60698220-60698239 None:intergenic 25.0%
! TCCATCAAATAAAAGAAGTT+TGG + chr2.3:60697222-60697241 None:intergenic 25.0%
! TTCTCCTCAAACTATTATTA+CGG - chr2.3:60697497-60697516 MS.gene74611:CDS 25.0%
!! AATAAGTTGAACCTAAGAAA+AGG - chr2.3:60697147-60697166 MS.gene74611:CDS 25.0%
!! ATCTCTTTATAAGAAGTACA+AGG - chr2.3:60697920-60697939 MS.gene74611:CDS 25.0%
!!! AAAAAAGTACCAGAAAAACT+TGG - chr2.3:60697600-60697619 MS.gene74611:CDS 25.0%
!!! GATTCAACATTTTGAAGTTA+GGG - chr2.3:60697719-60697738 MS.gene74611:CDS 25.0%
!!! TCCAAACTTCTTTTATTTGA+TGG - chr2.3:60697218-60697237 MS.gene74611:CDS 25.0%
!!! TGATTCAACATTTTGAAGTT+AGG - chr2.3:60697718-60697737 MS.gene74611:CDS 25.0%
!!! TGTGTGTACTCAATTTTAAT+GGG - chr2.3:60698270-60698289 MS.gene74611:intron 25.0%
AAACAACCATGAATACGATT+CGG + chr2.3:60697448-60697467 None:intergenic 30.0%
AACTTGTCCTTTATGTATAC+TGG + chr2.3:60697792-60697811 None:intergenic 30.0%
AGTTGTGATCAGGAATATAA+AGG + chr2.3:60698352-60698371 None:intergenic 30.0%
CAATGGTCTAATCAGTTATT+TGG - chr2.3:60698401-60698420 MS.gene74611:intron 30.0%
CACTAACTTAATCCTTATCA+TGG + chr2.3:60696893-60696912 None:intergenic 30.0%
CATGATAAGGATTAAGTTAG+TGG - chr2.3:60696891-60696910 MS.gene74611:CDS 30.0%
CTATCCGTAATAATAGTTTG+AGG + chr2.3:60697504-60697523 None:intergenic 30.0%
CTCAAACTATTATTACGGAT+AGG - chr2.3:60697502-60697521 MS.gene74611:CDS 30.0%
GACAATCTAATTCAATTACC+AGG + chr2.3:60696615-60696634 None:intergenic 30.0%
GACATTTGAGGAATGTATTA+TGG - chr2.3:60697256-60697275 MS.gene74611:CDS 30.0%
TACATAAAGGACAAGTTTCT+TGG - chr2.3:60697795-60697814 MS.gene74611:CDS 30.0%
TTAGTTAAAAAGATGGCAAG+TGG - chr2.3:60696985-60697004 MS.gene74611:CDS 30.0%
TTATGAATTACCGTAGATCT+TGG + chr2.3:60696341-60696360 None:intergenic 30.0%
TTCATGATGTAAAACTTGAG+AGG - chr2.3:60698513-60698532 MS.gene74611:CDS 30.0%
TTGTCAAGAAAATCCTTCAA+AGG + chr2.3:60697891-60697910 None:intergenic 30.0%
TTTGACCAAGAAGATTATGA+TGG + chr2.3:60698120-60698139 None:intergenic 30.0%
TTTGTTGGAATAAATCACCA+TGG - chr2.3:60697378-60697397 MS.gene74611:CDS 30.0%
! AATCTGTGTTATTAGGTTGT+GGG - chr2.3:60697403-60697422 MS.gene74611:CDS 30.0%
! ATTCATGGTTGTTTAGAACA+TGG - chr2.3:60697454-60697473 MS.gene74611:CDS 30.0%
! CTGTGTGTACTCAATTTTAA+TGG - chr2.3:60698269-60698288 MS.gene74611:intron 30.0%
! GTCAATTTAGATTTTGCGTT+AGG - chr2.3:60696491-60696510 MS.gene74611:CDS 30.0%
! TGTCAAGATGATATTTCTGA+AGG - chr2.3:60696631-60696650 MS.gene74611:CDS 30.0%
! TTCATGGTTGTTTAGAACAT+GGG - chr2.3:60697455-60697474 MS.gene74611:CDS 30.0%
!! ATTTTGTTTGACGATATGCT+AGG - chr2.3:60696543-60696562 MS.gene74611:CDS 30.0%
!! GAAGAAATGTTCTCTTGTTT+TGG - chr2.3:60698068-60698087 MS.gene74611:CDS 30.0%
!! GTGTGTACTCAATTTTAATG+GGG - chr2.3:60698271-60698290 MS.gene74611:intron 30.0%
!! TTATATTTGCTATGCCAAAG+AGG - chr2.3:60696720-60696739 MS.gene74611:CDS 30.0%
!! TTGATGGATTTCAATGATGA+AGG - chr2.3:60697234-60697253 MS.gene74611:CDS 30.0%
AAAATAACGACATGCAGCTT+TGG + chr2.3:60697295-60697314 None:intergenic 35.0%
AACTTAATCCTTATCATGGC+AGG + chr2.3:60696889-60696908 None:intergenic 35.0%
AAGTACCAGAAAAACTTGGA+GGG - chr2.3:60697604-60697623 MS.gene74611:CDS 35.0%
AATGAACTCGGTCTTCATAT+AGG + chr2.3:60697764-60697783 None:intergenic 35.0%
ACATTTCTTCCACTTCAAGT+TGG + chr2.3:60698058-60698077 None:intergenic 35.0%
ATAAAGGACAAGTTTCTTGG+TGG - chr2.3:60697798-60697817 MS.gene74611:CDS 35.0%
ATATGAAGACCGAGTTCATT+GGG - chr2.3:60697764-60697783 MS.gene74611:CDS 35.0%
ATGAACTCGGTCTTCATATA+GGG + chr2.3:60697763-60697782 None:intergenic 35.0%
ATTCCAACAAAAGTCACAAG+AGG + chr2.3:60697369-60697388 None:intergenic 35.0%
CCAAAACAATGATGAGATCT+GGG + chr2.3:60697564-60697583 None:intergenic 35.0%
CTAATAACACAGATTGACCA+TGG + chr2.3:60697398-60697417 None:intergenic 35.0%
CTCCTAAGTACATTCTATCA+CGG - chr2.3:60698306-60698325 MS.gene74611:intron 35.0%
GAAAGTGATTGAATTTGAGG+CGG - chr2.3:60697683-60697702 MS.gene74611:CDS 35.0%
GTGATAGATACAGAAGGTAA+TGG - chr2.3:60697075-60697094 MS.gene74611:CDS 35.0%
TATATGAAGACCGAGTTCAT+TGG - chr2.3:60697763-60697782 MS.gene74611:CDS 35.0%
TATATTCCTGATCACAACTC+TGG - chr2.3:60698353-60698372 MS.gene74611:intron 35.0%
TCAAATTCCATTCCAATAGC+AGG + chr2.3:60696676-60696695 None:intergenic 35.0%
TCAATGATGAAGGACATTTG+AGG - chr2.3:60697244-60697263 MS.gene74611:CDS 35.0%
TGTTCTTGTTCTTCTTCTTG+AGG + chr2.3:60696274-60696293 None:intergenic 35.0%
TTGAGAAAAGAAACCAGAAC+TGG - chr2.3:60696859-60696878 MS.gene74611:CDS 35.0%
! AAAGTACCAGAAAAACTTGG+AGG - chr2.3:60697603-60697622 MS.gene74611:CDS 35.0%
! ATTCCTCTTGTGACTTTTGT+TGG - chr2.3:60697363-60697382 MS.gene74611:CDS 35.0%
! CAATCTGTGTTATTAGGTTG+TGG - chr2.3:60697402-60697421 MS.gene74611:CDS 35.0%
! CATGGTCAATCTGTGTTATT+AGG - chr2.3:60697396-60697415 MS.gene74611:CDS 35.0%
!! TGTACTCAATTTTAATGGGG+TGG - chr2.3:60698274-60698293 MS.gene74611:intron 35.0%
!!! AAAGAGCGTGTTTTGATTGA+GGG - chr2.3:60698137-60698156 MS.gene74611:CDS 35.0%
AAACGACCGAATCGTATTCA+TGG - chr2.3:60697439-60697458 MS.gene74611:CDS 40.0%
AAAGGACTAATGCTCTCACT+AGG + chr2.3:60697840-60697859 None:intergenic 40.0%
AAGGACTAATGCTCTCACTA+GGG + chr2.3:60697839-60697858 None:intergenic 40.0%
AAGTGCCTTACAAGTTATGG+AGG - chr2.3:60698424-60698443 MS.gene74611:intron 40.0%
AATTACCAGGCATTCTCCAT+CGG + chr2.3:60696602-60696621 None:intergenic 40.0%
AGAAGAACAAGAACACCCAA+AGG - chr2.3:60696279-60696298 MS.gene74611:CDS 40.0%
CACCGTGATAGAATGTACTT+AGG + chr2.3:60698311-60698330 None:intergenic 40.0%
CATGAAGTTCCAACTTGAAG+TGG - chr2.3:60698046-60698065 MS.gene74611:CDS 40.0%
CGTGATAGAATGTACTTAGG+AGG + chr2.3:60698308-60698327 None:intergenic 40.0%
CTAAGTACATTCTATCACGG+TGG - chr2.3:60698309-60698328 MS.gene74611:intron 40.0%
GACATTAAATTTCGCTACCC+AGG + chr2.3:60696474-60696493 None:intergenic 40.0%
GCACTTGTGATAGATACAGA+AGG - chr2.3:60697069-60697088 MS.gene74611:CDS 40.0%
GCCAAAACAATGATGAGATC+TGG + chr2.3:60697565-60697584 None:intergenic 40.0%
GTTCAGACATACACCTTTGA+AGG - chr2.3:60697875-60697894 MS.gene74611:CDS 40.0%
TAGGCACGCTGATATTGTTT+AGG - chr2.3:60696510-60696529 MS.gene74611:CDS 40.0%
TAGTTAGCTGCATACGACAT+AGG + chr2.3:60697197-60697216 None:intergenic 40.0%
TGGCTCCATCATAATCTTCT+TGG - chr2.3:60698112-60698131 MS.gene74611:CDS 40.0%
TGTTGTGATCAATTACCCGA+TGG - chr2.3:60696583-60696602 MS.gene74611:CDS 40.0%
TTACCGTAGATCTTGGAAAG+AGG + chr2.3:60696334-60696353 None:intergenic 40.0%
TTCTGCAATTGCACTTTGCA+AGG + chr2.3:60697535-60697554 None:intergenic 40.0%
TTGAAGTTAGGGATAACGAG+TGG - chr2.3:60697730-60697749 MS.gene74611:CDS 40.0%
TTGCCTCTTTCCAAGATCTA+CGG - chr2.3:60696328-60696347 MS.gene74611:CDS 40.0%
TTGGGCACCAGTATACATAA+AGG - chr2.3:60697782-60697801 MS.gene74611:CDS 40.0%
TTGTTTGACGATATGCTAGG+TGG - chr2.3:60696546-60696565 MS.gene74611:CDS 40.0%
TTTGATTGAGGGAAACAGAC+AGG - chr2.3:60698148-60698167 MS.gene74611:CDS 40.0%
! ACATGGGTTACTTGTATGTC+AGG - chr2.3:60697471-60697490 MS.gene74611:CDS 40.0%
! CCCAGATCTCATCATTGTTT+TGG - chr2.3:60697561-60697580 MS.gene74611:CDS 40.0%
! CTTGTGAGTCACCTTTTCTT+AGG + chr2.3:60697161-60697180 None:intergenic 40.0%
!! ATGTATTATGGGTTGATGCC+AGG - chr2.3:60697268-60697287 MS.gene74611:CDS 40.0%
!! ATTTGCTATGCCAAAGAGGT+GGG - chr2.3:60696724-60696743 MS.gene74611:CDS 40.0%
!! CTGCAGTTCAAAAGAGCATT+TGG + chr2.3:60697997-60698016 None:intergenic 40.0%
!! TATTTGCTATGCCAAAGAGG+TGG - chr2.3:60696723-60696742 MS.gene74611:CDS 40.0%
!! TGGAAGTGCCTTACAAGTTA+TGG - chr2.3:60698421-60698440 MS.gene74611:intron 40.0%
!!! AGAGCATTTGGTTTTCAGCA+AGG + chr2.3:60697985-60698004 None:intergenic 40.0%
!!! AGCATTTGGTTTTCAGCAAG+GGG + chr2.3:60697983-60698002 None:intergenic 40.0%
!!! CAAAGAGCGTGTTTTGATTG+AGG - chr2.3:60698136-60698155 MS.gene74611:CDS 40.0%
!!! GAGCATTTGGTTTTCAGCAA+GGG + chr2.3:60697984-60698003 None:intergenic 40.0%
ACCTCTTGTGTAGGAAACCT+GGG - chr2.3:60696454-60696473 MS.gene74611:CDS 45.0%
AGCTCTGTCATCTGTTGCAT+TGG + chr2.3:60697112-60697131 None:intergenic 45.0%
AGTTAGTGGAGTCTCAGAGA+TGG - chr2.3:60696905-60696924 MS.gene74611:CDS 45.0%
ATACTGGTGCCCAATGAACT+CGG + chr2.3:60697776-60697795 None:intergenic 45.0%
ATGCTGCATACCTCTTGTGT+AGG - chr2.3:60696445-60696464 MS.gene74611:CDS 45.0%
ATTACCAGGCATTCTCCATC+GGG + chr2.3:60696601-60696620 None:intergenic 45.0%
CACACAAAATCCCACCTCTT+TGG + chr2.3:60696737-60696756 None:intergenic 45.0%
CTCGAACATAACCACGTCTT+AGG - chr2.3:60696946-60696965 MS.gene74611:CDS 45.0%
GAACTACCAGAGTTGTGATC+AGG + chr2.3:60698362-60698381 None:intergenic 45.0%
GCCTTACAAGTTATGGAGGA+GGG - chr2.3:60698428-60698447 MS.gene74611:intron 45.0%
GGACAAGTTTCTTGGTGGAA+TGG - chr2.3:60697803-60697822 MS.gene74611:CDS 45.0%
GTATCTTAGCACCTAAGACG+TGG + chr2.3:60696960-60696979 None:intergenic 45.0%
TACCTCTTGTGTAGGAAACC+TGG - chr2.3:60696453-60696472 MS.gene74611:CDS 45.0%
TCAGAGATGGAGGATATGTG+AGG - chr2.3:60696918-60696937 MS.gene74611:CDS 45.0%
TGCCTTACAAGTTATGGAGG+AGG - chr2.3:60698427-60698446 MS.gene74611:intron 45.0%
TTCCATTCCAATAGCAGGTG+CGG + chr2.3:60696671-60696690 None:intergenic 45.0%
! AAGAGGTGGGATTTTGTGTG+AGG - chr2.3:60696737-60696756 MS.gene74611:CDS 45.0%
! ATTGAATTTGAGGCGGCATG+GGG - chr2.3:60697690-60697709 MS.gene74611:CDS 45.0%
! GATTGAATTTGAGGCGGCAT+GGG - chr2.3:60697689-60697708 MS.gene74611:CDS 45.0%
! GTGCTTTGTTGTAGCAGTCA+AGG - chr2.3:60696808-60696827 MS.gene74611:CDS 45.0%
! TCCCTCCTCCATAACTTGTA+AGG + chr2.3:60698432-60698451 None:intergenic 45.0%
! TGATTGAATTTGAGGCGGCA+TGG - chr2.3:60697688-60697707 MS.gene74611:CDS 45.0%
ACCACTCAACTACGTGCAGA+TGG - chr2.3:60698092-60698111 MS.gene74611:CDS 50.0%
ACCCAGGTTTCCTACACAAG+AGG + chr2.3:60696458-60696477 None:intergenic 50.0%
ATTACCCGATGGAGAATGCC+TGG - chr2.3:60696594-60696613 MS.gene74611:CDS 50.0%
CAAAAGCTTGACACCGTCGA+CGG - chr2.3:60696238-60696257 MS.gene74611:CDS 50.0%
CTGGTTGTCCTGCCATGATA+AGG - chr2.3:60696878-60696897 MS.gene74611:CDS 50.0%
GAATTTCCCGCACCTGCTAT+TGG - chr2.3:60696661-60696680 MS.gene74611:CDS 50.0%
GGGAAACAGACAGGAGATCA+AGG - chr2.3:60698157-60698176 MS.gene74611:CDS 50.0%
TAGTGGAGTCTCAGAGATGG+AGG - chr2.3:60696908-60696927 MS.gene74611:CDS 50.0%
TCCATTCCAATAGCAGGTGC+GGG + chr2.3:60696670-60696689 None:intergenic 50.0%
! CGCAACCCTCCAAGTTTTTC+TGG + chr2.3:60697612-60697631 None:intergenic 50.0%
! TTAGGTTGTGGGTTGCTTGC+AGG - chr2.3:60697414-60697433 MS.gene74611:CDS 50.0%
!! GTCGACGGTGTCAAGCTTTT+GGG + chr2.3:60696239-60696258 None:intergenic 50.0%
ACTGACGCGCTGCATCGTAA+TGG + chr2.3:60698469-60698488 None:intergenic 55.0%
CATGGCAGGACAACCAGTTC+TGG + chr2.3:60696875-60696894 None:intergenic 55.0%
GCCATCTGCACGTAGTTGAG+TGG + chr2.3:60698096-60698115 None:intergenic 55.0%
TCCCGCACCTGCTATTGGAA+TGG - chr2.3:60696666-60696685 MS.gene74611:CDS 55.0%
!! ACGACATGCAGCTTTGGACC+TGG + chr2.3:60697289-60697308 None:intergenic 55.0%
!! CGTCGACGGTGTCAAGCTTT+TGG + chr2.3:60696240-60696259 None:intergenic 55.0%
!! CTCGTTGCCTAGCTCTGATG+CGG - chr2.3:60697020-60697039 MS.gene74611:CDS 55.0%
!! TTGCCTAGCTCTGATGCGGA+GGG - chr2.3:60697024-60697043 MS.gene74611:CDS 55.0%
AGGTTGAGACTCGCCGTCGA+CGG + chr2.3:60696254-60696273 None:intergenic 60.0%
TTCCCCTCCGCATCAGAGCT+AGG + chr2.3:60697030-60697049 None:intergenic 60.0%
!! GTTGCCTAGCTCTGATGCGG+AGG - chr2.3:60697023-60697042 MS.gene74611:CDS 60.0%
!! TGCCTAGCTCTGATGCGGAG+GGG - chr2.3:60697025-60697044 MS.gene74611:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 60696220 60698538 60696220 ID=MS.gene74611
chr2.3 mRNA 60696220 60698538 60696220 ID=MS.gene74611.t1;Parent=MS.gene74611
chr2.3 exon 60698458 60698538 60698458 ID=MS.gene74611.t1.exon1;Parent=MS.gene74611.t1
chr2.3 CDS 60698458 60698538 60698458 ID=cds.MS.gene74611.t1;Parent=MS.gene74611.t1
chr2.3 exon 60696220 60698193 60696220 ID=MS.gene74611.t1.exon2;Parent=MS.gene74611.t1
chr2.3 CDS 60696220 60698193 60696220 ID=cds.MS.gene74611.t1;Parent=MS.gene74611.t1
Gene Sequence

>MS.gene74611

ATGTCAGAGTTGCAGACCCAAAAGCTTGACACCGTCGACGGCGAGTCTCAACCTCAAGAAGAAGAACAAGAACACCCAAAGGTAATTAATTTTTCATATATATGCTCTTTGCCTCTTTCCAAGATCTACGGTAATTCATAATGAAACAAAATCTCAATTTAATTGTAGCCATTTGAAATAAGTTAGATACGTGATATATTTATGCAAGTAAGTGATTACATGTTTATGCTGCATACCTCTTGTGTAGGAAACCTGGGTAGCGAAATTTAATGTCAATTTAGATTTTGCGTTAGGCACGCTGATATTGTTTAGGTAGCTTATTGATTTTGTTTGACGATATGCTAGGTGGACGACATTTCTGTGTGTTGTGATCAATTACCCGATGGAGAATGCCTGGTAATTGAATTAGATTGTCAAGATGATATTTCTGAAGGAAGAAAAGAATTTCCCGCACCTGCTATTGGAATGGAATTTGAGTCATATGATGATGCTTACAGTTATTATATTTGCTATGCCAAAGAGGTGGGATTTTGTGTGAGGATTAAGAATTCATGTTTCAAGCGAAATAGCAAAGAAAAATATGGTGCAGTGCTTTGTTGTAGCAGTCAAGGTTTCAATAGAACAAAAGATGTTGACATTTTGAGAAAAGAAACCAGAACTGGTTGTCCTGCCATGATAAGGATTAAGTTAGTGGAGTCTCAGAGATGGAGGATATGTGAGGTTACTCTCGAACATAACCACGTCTTAGGTGCTAAGATACATAAATTAGTTAAAAAGATGGCAAGTGGAACTAAAAAGAACTCGTTGCCTAGCTCTGATGCGGAGGGGAAAACAATTAAGATATATCATGCACTTGTGATAGATACAGAAGGTAATGGCAATTTAAACTCCAATGCAACAGATGACAGAGCTTTCTCGAAATATTCTAATAAGTTGAACCTAAGAAAAGGTGACTCACAAGCCATTTATAATTTCCTATGTCGTATGCAGCTAACTAATCCAAACTTCTTTTATTTGATGGATTTCAATGATGAAGGACATTTGAGGAATGTATTATGGGTTGATGCCAGGTCCAAAGCTGCATGTCGTTATTTTAGCGATGTCATTTATTTTGACAACACTTATTTGTCAAATAAATATGAAATTCCTCTTGTGACTTTTGTTGGAATAAATCACCATGGTCAATCTGTGTTATTAGGTTGTGGGTTGCTTGCAGGTGAAACGACCGAATCGTATTCATGGTTGTTTAGAACATGGGTTACTTGTATGTCAGGATGTTCTCCTCAAACTATTATTACGGATAGGTGCAAGACCTTGCAAAGTGCAATTGCAGAAAATTTTCCCAGATCTCATCATTGTTTTGGCTTGTCATTAGTTATGAAAAAAGTACCAGAAAAACTTGGAGGGTTGCGCAATTACGACGCAATCAGAAAAGCACTGATTAAAGCAGTTTATGAGACATTGAAAGTGATTGAATTTGAGGCGGCATGGGGATTTATGATTCAACATTTTGAAGTTAGGGATAACGAGTGGCTGCGTTCCCTATATGAAGACCGAGTTCATTGGGCACCAGTATACATAAAGGACAAGTTTCTTGGTGGAATGGCTACTACACGCCCTAGTGAGAGCATTAGTCCTTTTTTCGATAAATACATGTTCAGACATACACCTTTGAAGGATTTTCTTGACAAGTATGAATTATCTCTTTATAAGAAGTACAAGGAAGAATCTTTAGCAGATATTGAATCTAGAAGCTCTAGCCCCTTGCTGAAAACCAAATGCTCTTTTGAACTGCAGTTGTCTAGCATGTACACAAAAGAAATATTCATGAAGTTCCAACTTGAAGTGGAAGAAATGTTCTCTTGTTTTGGTACCACTCAACTACGTGCAGATGGCTCCATCATAATCTTCTTGGTCAAAGAGCGTGTTTTGATTGAGGGAAACAGACAGGAGATCAAGGATTTTGAAGTTGTTTACAGTAAATCAGCATGTGAAGTCCGTTGTATTTGTTCTTGCTTTAATTTTTATGGATATCTATGTCGGCATGCGCTGTGTGTACTCAATTTTAATGGGGTGGAAGAGATTCCTCCTAAGTACATTCTATCACGGTGGAAGAAAGATTACAAACGCCTTTATATTCCTGATCACAACTCTGGTAGTTCTGATGATATTGAACGTATTCAATGGTCTAATCAGTTATTTGGAAGTGCCTTACAAGTTATGGAGGAGGGAATGATTTCTATAGACCATTACGATGCAGCGCGTCAGTCTTTTGAAGAATCACTTAATAAGGTTCATGATGTAAAACTTGAGAGGTGA
Protein sequence

>MS.gene74611.t1

MSELQTQKLDTVDGESQPQEEEQEHPKVDDISVCCDQLPDGECLVIELDCQDDISEGRKEFPAPAIGMEFESYDDAYSYYICYAKEVGFCVRIKNSCFKRNSKEKYGAVLCCSSQGFNRTKDVDILRKETRTGCPAMIRIKLVESQRWRICEVTLEHNHVLGAKIHKLVKKMASGTKKNSLPSSDAEGKTIKIYHALVIDTEGNGNLNSNATDDRAFSKYSNKLNLRKGDSQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNVLWVDARSKAACRYFSDVIYFDNTYLSNKYEIPLVTFVGINHHGQSVLLGCGLLAGETTESYSWLFRTWVTCMSGCSPQTIITDRCKTLQSAIAENFPRSHHCFGLSLVMKKVPEKLGGLRNYDAIRKALIKAVYETLKVIEFEAAWGFMIQHFEVRDNEWLRSLYEDRVHWAPVYIKDKFLGGMATTRPSESISPFFDKYMFRHTPLKDFLDKYELSLYKKYKEESLADIESRSSSPLLKTKCSFELQLSSMYTKEIFMKFQLEVEEMFSCFGTTQLRADGSIIIFLVKERVLIEGNRQEIKDFEVVYSKSACEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPPKYILSRWKKDYKRLYIPDHNSGSSDDIERIQWSNQLFGSALQVMEEGMISIDHYDAARQSFEESLNKVHDVKLER