Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74660.t1 | GAU51326.1 | 64 | 211 | 50 | 2 | 1 | 185 | 274 | 484 | 2.50E-58 | 235.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74660.t1 | A0A2Z6P6F7 | 64.0 | 211 | 50 | 2 | 1 | 185 | 274 | 484 | 1.8e-58 | 235.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene74660.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74660.t1 | MTR_6g033350 | 59.615 | 208 | 58 | 2 | 1 | 182 | 269 | 476 | 4.20e-71 | 230 |
| MS.gene74660.t1 | MTR_6g033345 | 85.714 | 119 | 17 | 0 | 1 | 119 | 99 | 217 | 7.10e-68 | 208 |
| MS.gene74660.t1 | MTR_1g095570 | 42.564 | 195 | 84 | 3 | 2 | 170 | 532 | 724 | 6.98e-35 | 130 |
| MS.gene74660.t1 | MTR_1g095570 | 42.564 | 195 | 84 | 3 | 2 | 170 | 964 | 1156 | 9.64e-35 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74660.t1 | AT3G52250 | 35.673 | 171 | 74 | 5 | 11 | 148 | 1075 | 1242 | 4.33e-18 | 82.8 |
| MS.gene74660.t1 | AT3G52250 | 35.673 | 171 | 74 | 5 | 11 | 148 | 1075 | 1242 | 4.33e-18 | 82.8 |
Find 57 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAATCAGAGGAAATTAA+TGG | 0.269500 | 6.3:-22925587 | MS.gene74660:CDS |
| AAAATACTCTGCACTGGTAT+TGG | 0.309902 | 6.3:+22925860 | None:intergenic |
| AAATACTCTGCACTGGTATT+GGG | 0.316949 | 6.3:+22925861 | None:intergenic |
| AGCTGAAATTGTTGGATTAC+CGG | 0.330846 | 6.3:-22925791 | MS.gene74660:CDS |
| AGATCATGAAGATGTAAATA+TGG | 0.365517 | 6.3:-22925558 | MS.gene74660:CDS |
| GGGATCAACATCAGAAGTTC+AGG | 0.381724 | 6.3:-22925398 | MS.gene74660:CDS |
| TCTCGCCGGAACAAGTTTCT+TGG | 0.390996 | 6.3:+22926001 | None:intergenic |
| GATTGGTGGTGAGTTTAAAC+TGG | 0.402769 | 6.3:-22925519 | MS.gene74660:CDS |
| GATACATCAGGAACTAAAAC+AGG | 0.418059 | 6.3:-22925691 | MS.gene74660:intron |
| GTTTCTAATGCATCTGTGAT+TGG | 0.429819 | 6.3:-22925536 | MS.gene74660:CDS |
| GGTCAAAGAGCTGAAATTGT+TGG | 0.437869 | 6.3:-22925799 | MS.gene74660:CDS |
| ATGAATCAGAGGAAATTAAT+GGG | 0.446396 | 6.3:-22925586 | MS.gene74660:CDS |
| ATGGTTACCTGAAAAGTTGC+GGG | 0.448022 | 6.3:+22925348 | None:intergenic |
| TTGTACAGTTCTGATAGGTC+TGG | 0.458341 | 6.3:-22925473 | MS.gene74660:CDS |
| CTGATAGGTCTGGTTCTCTC+CGG | 0.460009 | 6.3:-22925463 | MS.gene74660:CDS |
| ATTGACCAAGAAACTTGTTC+CGG | 0.462073 | 6.3:-22926006 | MS.gene74660:CDS |
| GCACAACGCACTCAGCGTTC+CGG | 0.465123 | 6.3:+22924198 | None:intergenic |
| TGCTTTATCATCTCACGGTA+AGG | 0.471280 | 6.3:-22925920 | MS.gene74660:CDS |
| AGCGAGACTTGCAAATGCAT+TGG | 0.481658 | 6.3:-22925835 | MS.gene74660:CDS |
| TGCATTGGAATGGATATCAT+TGG | 0.492160 | 6.3:-22925820 | MS.gene74660:CDS |
| GATAGCATAGAAAACGGAAA+AGG | 0.502988 | 6.3:-22925419 | MS.gene74660:CDS |
| TGATAGGTCTGGTTCTCTCC+GGG | 0.511457 | 6.3:-22925462 | MS.gene74660:CDS |
| CACTTCACCACTGCTCTCGC+CGG | 0.512241 | 6.3:+22925987 | None:intergenic |
| GTAAATGACTCTGATACATC+AGG | 0.519145 | 6.3:-22925703 | MS.gene74660:CDS |
| GAGTTTAAACTGGGCACAGA+TGG | 0.520639 | 6.3:-22925509 | MS.gene74660:CDS |
| CTGGGCACAGATGGTAATGT+AGG | 0.523165 | 6.3:-22925500 | MS.gene74660:CDS |
| ATAGCATAGAAAACGGAAAA+GGG | 0.523407 | 6.3:-22925418 | MS.gene74660:CDS |
| CTTCATGCTTTATCATCTCA+CGG | 0.526183 | 6.3:-22925925 | MS.gene74660:CDS |
| AATGCATGCATTGCAGAGAC+AGG | 0.526335 | 6.3:-22925730 | MS.gene74660:CDS |
| TTCTCTCCGGGACCAAGCTA+TGG | 0.527796 | 6.3:-22925450 | MS.gene74660:CDS |
| GGGGATGATGATGTGGATAG+TGG | 0.530814 | 6.3:-22925769 | MS.gene74660:CDS |
| GAGAATTCTGATGGTGGCAG+AGG | 0.534576 | 6.3:+22925370 | None:intergenic |
| ATGTCGGATAGCATAGAAAA+CGG | 0.534972 | 6.3:-22925425 | MS.gene74660:CDS |
| GTGAAGTGGTGCTTACTGAT+TGG | 0.543372 | 6.3:-22925972 | MS.gene74660:CDS |
| ATGATGATGTGGATAGTGGC+AGG | 0.546426 | 6.3:-22925765 | MS.gene74660:CDS |
| CGGCGAGAGCAGTGGTGAAG+TGG | 0.551009 | 6.3:-22925986 | MS.gene74660:CDS |
| TCTAATGCATCTGTGATTGG+TGG | 0.551291 | 6.3:-22925533 | MS.gene74660:CDS |
| GACTTGCAAATGCATTGGAA+TGG | 0.553819 | 6.3:-22925830 | MS.gene74660:CDS |
| TCTGATGCCGGTCATTACTC+AGG | 0.557497 | 6.3:-22926031 | None:intergenic |
| GCTGAAATTGTTGGATTACC+GGG | 0.560365 | 6.3:-22925790 | MS.gene74660:CDS |
| ACATAACCATAGCTTGGTCC+CGG | 0.564196 | 6.3:+22925444 | None:intergenic |
| GATGGTTACCTGAAAAGTTG+CGG | 0.571946 | 6.3:+22925347 | None:intergenic |
| GTGTCTTGTACAGTTCTGAT+AGG | 0.575821 | 6.3:-22925478 | MS.gene74660:CDS |
| TCAATATCCTGAGTAATGAC+CGG | 0.596443 | 6.3:+22926024 | None:intergenic |
| TATCCGACATAACCATAGCT+TGG | 0.602440 | 6.3:+22925438 | None:intergenic |
| GGACCAAGCTATGGTTATGT+CGG | 0.606855 | 6.3:-22925441 | MS.gene74660:CDS |
| TGATTGGACAGATGTGGAGA+AGG | 0.607263 | 6.3:-22925956 | MS.gene74660:CDS |
| AGCTGACTTAGATGAATCAG+AGG | 0.607900 | 6.3:-22925597 | MS.gene74660:CDS |
| CGTGAGATGATAAAGCATGA+AGG | 0.608100 | 6.3:+22925926 | None:intergenic |
| CTGAAATTGTTGGATTACCG+GGG | 0.616803 | 6.3:-22925789 | MS.gene74660:CDS |
| ACTTGTTCCGGCGAGAGCAG+TGG | 0.621466 | 6.3:-22925994 | MS.gene74660:CDS |
| CTATCCACATCATCATCCCC+CGG | 0.629987 | 6.3:+22925772 | None:intergenic |
| TTGCGGGAGAATTCTGATGG+TGG | 0.638607 | 6.3:+22925364 | None:intergenic |
| TGAAATTGTTGGATTACCGG+GGG | 0.652774 | 6.3:-22925788 | MS.gene74660:CDS |
| GCTTACTGATTGGACAGATG+TGG | 0.657037 | 6.3:-22925962 | MS.gene74660:CDS |
| ATTGGTGGTGAGTTTAAACT+GGG | 0.671628 | 6.3:-22925518 | MS.gene74660:CDS |
| AAGTTGCGGGAGAATTCTGA+TGG | 0.697908 | 6.3:+22925361 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATATAAAACTGAAAT+GGG | + | chr6.3:22925773-22925792 | None:intergenic | 10.0% |
| !! | GAAATTAATTTAAATTAACA+AGG | + | chr6.3:22925284-22925303 | None:intergenic | 10.0% |
| !! | TAATAAATATAAAACTGAAA+TGG | + | chr6.3:22925774-22925793 | None:intergenic | 10.0% |
| !!! | ATTTTTGTCTCTGATTTAAT+TGG | - | chr6.3:22925821-22925840 | MS.gene74660:CDS | 20.0% |
| !!! | TCATTTTGAGTAATAATGTA+AGG | - | chr6.3:22925125-22925144 | MS.gene74660:intron | 20.0% |
| ! | ACAGAACAAATTATAGTGAA+CGG | + | chr6.3:22924925-22924944 | None:intergenic | 25.0% |
| ! | AGATCATGAAGATGTAAATA+TGG | - | chr6.3:22924678-22924697 | MS.gene74660:intron | 25.0% |
| ! | ATGAATCAGAGGAAATTAAT+GGG | - | chr6.3:22924650-22924669 | MS.gene74660:intron | 25.0% |
| ! | TATGTGTTAATCTTGTATAG+CGG | - | chr6.3:22925597-22925616 | MS.gene74660:CDS | 25.0% |
| ! | TTAAATTAACAAGGTATGAG+TGG | + | chr6.3:22925275-22925294 | None:intergenic | 25.0% |
| !!! | TTTTTGTGAATCTAGAATTC+AGG | - | chr6.3:22925341-22925360 | MS.gene74660:intron | 25.0% |
| ACCACAACAGAATGATATTA+AGG | - | chr6.3:22925220-22925239 | MS.gene74660:intron | 30.0% | |
| ATAGCATAGAAAACGGAAAA+GGG | - | chr6.3:22924818-22924837 | MS.gene74660:intron | 30.0% | |
| ATGAATTACGAGATCAAACT+TGG | + | chr6.3:22925109-22925128 | None:intergenic | 30.0% | |
| GATGAATCAGAGGAAATTAA+TGG | - | chr6.3:22924649-22924668 | MS.gene74660:intron | 30.0% | |
| GTGAAAACCCAATGATATAT+GGG | + | chr6.3:22925897-22925916 | None:intergenic | 30.0% | |
| TCCTTAATATCATTCTGTTG+TGG | + | chr6.3:22925224-22925243 | None:intergenic | 30.0% | |
| TTGTTCAGTTTCTCTTCATT+CGG | + | chr6.3:22925568-22925587 | None:intergenic | 30.0% | |
| ! | AAGCTCGGTAATGATTTTAA+AGG | + | chr6.3:22925307-22925326 | None:intergenic | 30.0% |
| ! | AGCTCGGTAATGATTTTAAA+GGG | + | chr6.3:22925306-22925325 | None:intergenic | 30.0% |
| !!! | TTTGTCTACACTGTTTTAGT+CGG | - | chr6.3:22925848-22925867 | MS.gene74660:CDS | 30.0% |
| AATTAACAAGGTATGAGTGG+TGG | + | chr6.3:22925272-22925291 | None:intergenic | 35.0% | |
| ACATCTCACAACATTAAGCT+CGG | + | chr6.3:22925322-22925341 | None:intergenic | 35.0% | |
| AGAATTGAACTGATACGACT+AGG | + | chr6.3:22924964-22924983 | None:intergenic | 35.0% | |
| AGCTGAAATTGTTGGATTAC+CGG | - | chr6.3:22924445-22924464 | MS.gene74660:intron | 35.0% | |
| AGTCGTATCAGTTCAATTCT+AGG | - | chr6.3:22924964-22924983 | MS.gene74660:intron | 35.0% | |
| ATGTCGGATAGCATAGAAAA+CGG | - | chr6.3:22924811-22924830 | MS.gene74660:intron | 35.0% | |
| CTTCATGCTTTATCATCTCA+CGG | - | chr6.3:22924311-22924330 | MS.gene74660:intron | 35.0% | |
| GAAATGTCTGTCCAATTGAT+TGG | - | chr6.3:22925871-22925890 | MS.gene74660:CDS | 35.0% | |
| GATACATCAGGAACTAAAAC+AGG | - | chr6.3:22924545-22924564 | MS.gene74660:intron | 35.0% | |
| GATAGCATAGAAAACGGAAA+AGG | - | chr6.3:22924817-22924836 | MS.gene74660:intron | 35.0% | |
| GGTGAAAACCCAATGATATA+TGG | + | chr6.3:22925898-22925917 | None:intergenic | 35.0% | |
| GTAAATGACTCTGATACATC+AGG | - | chr6.3:22924533-22924552 | MS.gene74660:intron | 35.0% | |
| GTGAACGGAACAAATTATGA+TGG | + | chr6.3:22924910-22924929 | None:intergenic | 35.0% | |
| GTTTCTAATGCATCTGTGAT+TGG | - | chr6.3:22924700-22924719 | MS.gene74660:intron | 35.0% | |
| TCAATATCCTGAGTAATGAC+CGG | + | chr6.3:22924215-22924234 | None:intergenic | 35.0% | |
| TCATGATGAACCTATTCCTA+TGG | - | chr6.3:22924601-22924620 | MS.gene74660:intron | 35.0% | |
| TGATATATGGGCCAATCAAT+TGG | + | chr6.3:22925885-22925904 | None:intergenic | 35.0% | |
| TGCATTGGAATGGATATCAT+TGG | - | chr6.3:22924416-22924435 | MS.gene74660:intron | 35.0% | |
| TGTTCAGTTTCTCTTCATTC+GGG | + | chr6.3:22925567-22925586 | None:intergenic | 35.0% | |
| ! | AAAATACTCTGCACTGGTAT+TGG | + | chr6.3:22924379-22924398 | None:intergenic | 35.0% |
| ! | AAATACTCTGCACTGGTATT+GGG | + | chr6.3:22924378-22924397 | None:intergenic | 35.0% |
| ! | ATTGACCAAGAAACTTGTTC+CGG | - | chr6.3:22924230-22924249 | MS.gene74660:intron | 35.0% |
| ! | CACATTTCTTCTCCTGTTTT+TGG | + | chr6.3:22925450-22925469 | None:intergenic | 35.0% |
| ! | TGATTGGCCCATATATCATT+GGG | - | chr6.3:22925887-22925906 | MS.gene74660:CDS | 35.0% |
| ! | TTGATTGGCCCATATATCAT+TGG | - | chr6.3:22925886-22925905 | MS.gene74660:CDS | 35.0% |
| !! | ATTGGTGGTGAGTTTAAACT+GGG | - | chr6.3:22924718-22924737 | MS.gene74660:intron | 35.0% |
| !! | TGTTGATTACTGGTTTCCAT+AGG | + | chr6.3:22924620-22924639 | None:intergenic | 35.0% |
| !! | TTACTGGTTTCCATAGGAAT+AGG | + | chr6.3:22924614-22924633 | None:intergenic | 35.0% |
| !!! | TTGTCTACACTGTTTTAGTC+GGG | - | chr6.3:22925849-22925868 | MS.gene74660:CDS | 35.0% |
| ATCAGGAACTAAAACAGGTG+TGG | - | chr6.3:22924550-22924569 | MS.gene74660:intron | 40.0% | |
| ATCATTCTGTTGTGGTTGTG+TGG | + | chr6.3:22925216-22925235 | None:intergenic | 40.0% | |
| ATGGTTACCTGAAAAGTTGC+GGG | + | chr6.3:22924891-22924910 | None:intergenic | 40.0% | |
| CAACAAGGAAGACCAAAAAC+AGG | - | chr6.3:22925435-22925454 | MS.gene74660:CDS | 40.0% | |
| CGCTAAAAAATACTCTGCAC+TGG | + | chr6.3:22924385-22924404 | None:intergenic | 40.0% | |
| CGTGAGATGATAAAGCATGA+AGG | + | chr6.3:22924313-22924332 | None:intergenic | 40.0% | |
| CGTTCTTATCAGATGTTAGC+TGG | + | chr6.3:22924577-22924596 | None:intergenic | 40.0% | |
| CTGAAATTGTTGGATTACCG+GGG | - | chr6.3:22924447-22924466 | MS.gene74660:intron | 40.0% | |
| GACTTGCAAATGCATTGGAA+TGG | - | chr6.3:22924406-22924425 | MS.gene74660:intron | 40.0% | |
| GATGGTTACCTGAAAAGTTG+CGG | + | chr6.3:22924892-22924911 | None:intergenic | 40.0% | |
| GCACTGTACATATAGGCTAA+GGG | - | chr6.3:22925401-22925420 | MS.gene74660:CDS | 40.0% | |
| GCTGAAATTGTTGGATTACC+GGG | - | chr6.3:22924446-22924465 | MS.gene74660:intron | 40.0% | |
| GGTCAAAGAGCTGAAATTGT+TGG | - | chr6.3:22924437-22924456 | MS.gene74660:intron | 40.0% | |
| GTTAATCTTGTATAGCGGCA+CGG | - | chr6.3:22925602-22925621 | MS.gene74660:intron | 40.0% | |
| TAGAATTCAGGATCCCAAGA+GGG | - | chr6.3:22925353-22925372 | MS.gene74660:intron | 40.0% | |
| TATCCGACATAACCATAGCT+TGG | + | chr6.3:22924801-22924820 | None:intergenic | 40.0% | |
| TCAGGAACTAAAACAGGTGT+GGG | - | chr6.3:22924551-22924570 | MS.gene74660:intron | 40.0% | |
| TCTAATGCATCTGTGATTGG+TGG | - | chr6.3:22924703-22924722 | MS.gene74660:intron | 40.0% | |
| TGAAATTGTTGGATTACCGG+GGG | - | chr6.3:22924448-22924467 | MS.gene74660:intron | 40.0% | |
| TGCTTTATCATCTCACGGTA+AGG | - | chr6.3:22924316-22924335 | MS.gene74660:intron | 40.0% | |
| ! | AGCTGACTTAGATGAATCAG+AGG | - | chr6.3:22924639-22924658 | MS.gene74660:intron | 40.0% |
| ! | CTAAGTCAGCTGTTGATTAC+TGG | + | chr6.3:22924630-22924649 | None:intergenic | 40.0% |
| ! | GTGTCTTGTACAGTTCTGAT+AGG | - | chr6.3:22924758-22924777 | MS.gene74660:intron | 40.0% |
| ! | TTGTACAGTTCTGATAGGTC+TGG | - | chr6.3:22924763-22924782 | MS.gene74660:intron | 40.0% |
| !! | GATTGGTGGTGAGTTTAAAC+TGG | - | chr6.3:22924717-22924736 | MS.gene74660:intron | 40.0% |
| !! | GTTCAGCTATTTCTCGTTTG+TGG | + | chr6.3:22925475-22925494 | None:intergenic | 40.0% |
| !!! | GTTTTTGGTCTTCCTTGTTG+CGG | + | chr6.3:22925435-22925454 | None:intergenic | 40.0% |
| AAAACAGCCGCGACCTTAAT+AGG | + | chr6.3:22926004-22926023 | None:intergenic | 45.0% | |
| AAGTTGCGGGAGAATTCTGA+TGG | + | chr6.3:22924878-22924897 | None:intergenic | 45.0% | |
| AATGCATGCATTGCAGAGAC+AGG | - | chr6.3:22924506-22924525 | MS.gene74660:intron | 45.0% | |
| ACATAACCATAGCTTGGTCC+CGG | + | chr6.3:22924795-22924814 | None:intergenic | 45.0% | |
| ACCAGTGGCACTGTACATAT+AGG | - | chr6.3:22925394-22925413 | MS.gene74660:CDS | 45.0% | |
| AGCGAGACTTGCAAATGCAT+TGG | - | chr6.3:22924401-22924420 | MS.gene74660:intron | 45.0% | |
| ATTAGCCGACGCTAAAACTG+GGG | - | chr6.3:22925625-22925644 | MS.gene74660:intron | 45.0% | |
| CTAGAATTCAGGATCCCAAG+AGG | - | chr6.3:22925352-22925371 | MS.gene74660:intron | 45.0% | |
| CTGTGAACTGCTGCTATTGA+CGG | + | chr6.3:22925919-22925938 | None:intergenic | 45.0% | |
| CTTACTGGTCATACCCTCTT+GGG | + | chr6.3:22925369-22925388 | None:intergenic | 45.0% | |
| GAGTTTAAACTGGGCACAGA+TGG | - | chr6.3:22924727-22924746 | MS.gene74660:intron | 45.0% | |
| GGACCAAGCTATGGTTATGT+CGG | - | chr6.3:22924795-22924814 | MS.gene74660:intron | 45.0% | |
| GGCACTGTACATATAGGCTA+AGG | - | chr6.3:22925400-22925419 | MS.gene74660:CDS | 45.0% | |
| GGGATCAACATCAGAAGTTC+AGG | - | chr6.3:22924838-22924857 | MS.gene74660:intron | 45.0% | |
| GTGAAGTGGTGCTTACTGAT+TGG | - | chr6.3:22924264-22924283 | MS.gene74660:intron | 45.0% | |
| TCTTACTGGTCATACCCTCT+TGG | + | chr6.3:22925370-22925389 | None:intergenic | 45.0% | |
| TGATTGGACAGATGTGGAGA+AGG | - | chr6.3:22924280-22924299 | MS.gene74660:intron | 45.0% | |
| ! | AGAGGGTATGACCAGTAAGA+TGG | - | chr6.3:22925370-22925389 | MS.gene74660:CDS | 45.0% |
| ! | ATGATGATGTGGATAGTGGC+AGG | - | chr6.3:22924471-22924490 | MS.gene74660:intron | 45.0% |
| ! | GAATTCTCCCGCAACTTTTC+AGG | - | chr6.3:22924881-22924900 | MS.gene74660:intron | 45.0% |
| ! | GAGTGGTGGTGTTAAGAAGA+TGG | + | chr6.3:22925258-22925277 | None:intergenic | 45.0% |
| ! | GATTAGCCGACGCTAAAACT+GGG | - | chr6.3:22925624-22925643 | MS.gene74660:intron | 45.0% |
| ! | GCTTACTGATTGGACAGATG+TGG | - | chr6.3:22924274-22924293 | MS.gene74660:intron | 45.0% |
| AACTGGGGATAGCCGTTAGT+CGG | - | chr6.3:22925640-22925659 | MS.gene74660:intron | 50.0% | |
| ACTAACTGGCTGCAGCGATA+GGG | - | chr6.3:22925966-22925985 | MS.gene74660:CDS | 50.0% | |
| ATAGCCGTTAGTCGGAAAGC+GGG | - | chr6.3:22925648-22925667 | MS.gene74660:intron | 50.0% | |
| CTATCCACATCATCATCCCC+CGG | + | chr6.3:22924467-22924486 | None:intergenic | 50.0% | |
| CTTTCCCGCTTTCCGACTAA+CGG | + | chr6.3:22925655-22925674 | None:intergenic | 50.0% | |
| GATAGCCGTTAGTCGGAAAG+CGG | - | chr6.3:22925647-22925666 | MS.gene74660:intron | 50.0% | |
| GCCTATATGTACAGTGCCAC+TGG | + | chr6.3:22925398-22925417 | None:intergenic | 50.0% | |
| TCTCGCCGGAACAAGTTTCT+TGG | + | chr6.3:22924238-22924257 | None:intergenic | 50.0% | |
| TTGCGGGAGAATTCTGATGG+TGG | + | chr6.3:22924875-22924894 | None:intergenic | 50.0% | |
| ! | ATTACCGGGGGATGATGATG+TGG | - | chr6.3:22924460-22924479 | MS.gene74660:intron | 50.0% |
| ! | CTGGGCACAGATGGTAATGT+AGG | - | chr6.3:22924736-22924755 | MS.gene74660:intron | 50.0% |
| ! | GGGGATGATGATGTGGATAG+TGG | - | chr6.3:22924467-22924486 | MS.gene74660:intron | 50.0% |
| ! | GTTTTGTGTCTGCAGGTCAC+CGG | - | chr6.3:22926019-22926038 | MS.gene74660:CDS | 50.0% |
| !! | CTGATAGGTCTGGTTCTCTC+CGG | - | chr6.3:22924773-22924792 | MS.gene74660:intron | 50.0% |
| !! | GAGAATTCTGATGGTGGCAG+AGG | + | chr6.3:22924869-22924888 | None:intergenic | 50.0% |
| !! | GCTATCCCCAGTTTTAGCGT+CGG | + | chr6.3:22925633-22925652 | None:intergenic | 50.0% |
| !! | GGATTAGCCGACGCTAAAAC+TGG | - | chr6.3:22925623-22925642 | MS.gene74660:intron | 50.0% |
| !! | TGATAGGTCTGGTTCTCTCC+GGG | - | chr6.3:22924774-22924793 | MS.gene74660:intron | 50.0% |
| AAGTCGCAGCAACACGAGCT+TGG | - | chr6.3:22925504-22925523 | MS.gene74660:CDS | 55.0% | |
| AGGGCACATGAACCGCAACA+AGG | - | chr6.3:22925420-22925439 | MS.gene74660:CDS | 55.0% | |
| AGTTCACAGCGCAATCACGC+CGG | - | chr6.3:22925930-22925949 | MS.gene74660:CDS | 55.0% | |
| CACTAACTGGCTGCAGCGAT+AGG | - | chr6.3:22925965-22925984 | MS.gene74660:CDS | 55.0% | |
| GACCAGTAAGATGGCACCAG+TGG | - | chr6.3:22925379-22925398 | MS.gene74660:CDS | 55.0% | |
| GTCTGGTGCAGCGCCTATTA+AGG | - | chr6.3:22925988-22926007 | MS.gene74660:CDS | 55.0% | |
| TGCAGCGCCTATTAAGGTCG+CGG | - | chr6.3:22925994-22926013 | MS.gene74660:CDS | 55.0% | |
| TTCTCTCCGGGACCAAGCTA+TGG | - | chr6.3:22924786-22924805 | MS.gene74660:intron | 55.0% | |
| !! | TGCCACTGGTGCCATCTTAC+TGG | + | chr6.3:22925384-22925403 | None:intergenic | 55.0% |
| ACTTGTTCCGGCGAGAGCAG+TGG | - | chr6.3:22924242-22924261 | MS.gene74660:intron | 60.0% | |
| CACTTCACCACTGCTCTCGC+CGG | + | chr6.3:22924252-22924271 | None:intergenic | 60.0% | |
| GAGCATGGCAGCGCACTAAC+TGG | - | chr6.3:22925952-22925971 | MS.gene74660:CDS | 60.0% | |
| GTTAGTGCGCTGCCATGCTC+CGG | + | chr6.3:22925952-22925971 | None:intergenic | 60.0% | |
| !! | CGCGGCTGTTTTGTGTCTGC+AGG | - | chr6.3:22926012-22926031 | MS.gene74660:CDS | 60.0% |
| AGCGCAATCACGCCGGAGCA+TGG | - | chr6.3:22925937-22925956 | MS.gene74660:CDS | 65.0% | |
| CGGCGAGAGCAGTGGTGAAG+TGG | - | chr6.3:22924250-22924269 | MS.gene74660:intron | 65.0% | |
| CTGGCTGCAGCGATAGGGTC+TGG | - | chr6.3:22925971-22925990 | MS.gene74660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 22924209 | 22926049 | 22924209 | ID=MS.gene74660 |
| chr6.3 | mRNA | 22924209 | 22926049 | 22924209 | ID=MS.gene74660.t1;Parent=MS.gene74660 |
| chr6.3 | exon | 22925692 | 22926049 | 22925692 | ID=MS.gene74660.t1.exon1;Parent=MS.gene74660.t1 |
| chr6.3 | CDS | 22925692 | 22926049 | 22925692 | ID=cds.MS.gene74660.t1;Parent=MS.gene74660.t1 |
| chr6.3 | exon | 22925356 | 22925617 | 22925356 | ID=MS.gene74660.t1.exon2;Parent=MS.gene74660.t1 |
| chr6.3 | CDS | 22925356 | 22925617 | 22925356 | ID=cds.MS.gene74660.t1;Parent=MS.gene74660.t1 |
| chr6.3 | exon | 22924209 | 22924224 | 22924209 | ID=MS.gene74660.t1.exon3;Parent=MS.gene74660.t1 |
| chr6.3 | CDS | 22924209 | 22924224 | 22924209 | ID=cds.MS.gene74660.t1;Parent=MS.gene74660.t1 |
| Gene Sequence |
| Protein sequence |
