AlfalfaGEDB | MS.gene74846

M. sativa cultivar XinJiangDaYe / MS.gene74846

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74846.t1	XP_024630916.1	94.3	737	42	0	1	737	1	737	0.00E+00	1401.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74846.t1	Q9SZL8	33.9	666	426	8	1	655	38	700	1.1e-107	392.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74846.t1	A0A3Q7Y261	79.1	722	148	1	3	724	5	723	0.0e+00	1184.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene74846.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74846.t1	MTR_0402s0040	58.743	366	78	6	394	759	200	492	1.81e-123	379
MS.gene74846.t1	MTR_0402s0040	72.637	201	54	1	9	209	1	200	2.13e-94	303
MS.gene74846.t1	MTR_7g113010	80.503	159	17	1	1	159	424	568	2.82e-79	266
MS.gene74846.t1	MTR_1g057920	92.683	123	9	0	1	123	1	123	9.41e-77	243
MS.gene74846.t1	MTR_6g017200	72.358	123	34	0	8	130	32	154	4.24e-55	186
MS.gene74846.t1	MTR_5g015480	57.669	163	65	1	1	163	27	185	2.37e-50	177
MS.gene74846.t1	MTR_2g070590	69.231	117	36	0	20	136	3	119	4.40e-49	169
MS.gene74846.t1	MTR_0558s0020	32.389	247	148	4	48	275	50	296	1.74e-39	148
MS.gene74846.t1	MTR_1g086270	59.130	115	35	1	329	443	1	103	2.54e-39	141
MS.gene74846.t1	MTR_6g051425	29.431	299	189	6	36	315	19	314	1.76e-37	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74846.t1	AT4G38180	33.934	666	425	9	1	655	39	700	6.08e-128	400
MS.gene74846.t1	AT4G15090	29.130	690	471	8	34	717	51	728	5.88e-98	322
MS.gene74846.t1	AT4G15090	29.130	690	471	8	34	717	51	728	5.88e-98	322
MS.gene74846.t1	AT4G15090	29.130	690	471	8	34	717	51	728	5.88e-98	322
MS.gene74846.t1	AT4G15090	29.130	690	471	8	34	717	51	728	5.88e-98	322
MS.gene74846.t1	AT4G15090	29.130	690	471	8	34	717	51	728	5.88e-98	322
MS.gene74846.t1	AT1G76320	31.240	605	387	13	38	634	1	584	1.01e-90	299
MS.gene74846.t1	AT1G76320	28.631	723	475	17	38	742	1	700	2.39e-90	299
MS.gene74846.t1	AT1G76320	28.631	723	475	17	38	742	1	700	2.39e-90	299
MS.gene74846.t1	AT1G76320	29.126	721	472	18	38	742	1	698	3.72e-90	299

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Find 111 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACAATGAGTTAACT+TGG	0.455569	1.1:+58731770	None:intergenic
AAAGAAAGTATTGCCAATAG+TGG	0.465982	1.1:-58734057	MS.gene74846:CDS
AAAGAGTTCGAGATTCCGTT+TGG	0.415306	1.1:-58733047	MS.gene74846:CDS
AAAGGGCTGTCAATGCTAAA+CGG	0.496120	1.1:-58732763	MS.gene74846:CDS
AAATAAGGATTATCGACCTT+TGG	0.372421	1.1:-58733332	MS.gene74846:CDS
AACACTACATACTAAAACGA+TGG	0.530470	1.1:-58732403	MS.gene74846:CDS
AACAGATCAAGATGCAGCAA+TGG	0.573110	1.1:-58733167	MS.gene74846:CDS
AACAGGATGCACAACGCATA+TGG	0.475930	1.1:-58733818	MS.gene74846:CDS
AACGATGGACAAGAGATGCA+AGG	0.621531	1.1:-58732388	MS.gene74846:CDS
AAGATTCACATGCTTCAAAA+AGG	0.299081	1.1:-58733899	MS.gene74846:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGGATTATCGACCTT+TGG	-	chr1.1:58732574-58732593	MS.gene74846:CDS	30.0%
AACACTACATACTAAAACGA+TGG	-	chr1.1:58733503-58733522	MS.gene74846:CDS	30.0%
AAGATTCACATGCTTCAAAA+AGG	-	chr1.1:58732007-58732026	MS.gene74846:CDS	30.0%
AATAAGGATTATCGACCTTT+GGG	-	chr1.1:58732575-58732594	MS.gene74846:CDS	30.0%
AGATTCACATGCTTCAAAAA+GGG	-	chr1.1:58732008-58732027	MS.gene74846:CDS	30.0%
ATATAAGACAGAATGCTCTT+AGG	-	chr1.1:58732816-58732835	MS.gene74846:CDS	30.0%
ATATATTGATGCAACTCTCT+TGG	+	chr1.1:58732281-58732300	None:intergenic	30.0%
GCACAGATGATTAATGATTA+TGG	-	chr1.1:58732509-58732528	MS.gene74846:CDS	30.0%
GCCTAAATTGAAAATGAAGA+AGG	-	chr1.1:58733207-58733226	MS.gene74846:CDS	30.0%
GTTATGCCAAAAACATTTCA+TGG	-	chr1.1:58732779-58732798	MS.gene74846:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	58731774	58734154	58731774	ID=MS.gene74846
chr1.1	mRNA	58731774	58734154	58731774	ID=MS.gene74846.t1;Parent=MS.gene74846
chr1.1	exon	58731959	58734154	58731959	ID=MS.gene74846.t1.exon1;Parent=MS.gene74846.t1
chr1.1	CDS	58731959	58734154	58731959	ID=cds.MS.gene74846.t1;Parent=MS.gene74846.t1
chr1.1	exon	58731774	58731881	58731774	ID=MS.gene74846.t1.exon2;Parent=MS.gene74846.t1
chr1.1	CDS	58731774	58731881	58731774	ID=cds.MS.gene74846.t1;Parent=MS.gene74846.t1

Gene Sequence

>MS.gene74846

ATGGATTCATCATCAATTCCAGATTGTGTCGATAAATGGGTGAACAATATCCATGAACAAAATGTTCATCACGAGAAAGAAAGTATTGCCAATAGTGGACCTCACTTGGGAATGCAGTTTGAATCTGAGGCGGTGGCATATGAATTTTATAATGATTACAGTAAAAGAATTGGATTTGATATTTGTCGAGAATATGGAAATAAAAGCATAATAGATGGAGTTTTGACTTCGAGAAGATTCACATGCTTCAAAAAGGGTGCGAAAGTTGTTGACAAAAGACGTCAACCGACGGCGGAGTCTAGAGCAGAAACCAGAACAGGATGCACAACGCATATGGTTATTTCACTTGATCGAAATATAGGAAAATATATGGTTGTTGACTTTGAAGCTCAACATAACCACCTTCTGGTTCCACCTGAGTATGTTCATATGATTCGCTCCCATCGACACATATCTGAGGCACAAGCATCACAAATTGTCTTGGGAGATGAATCTGGCTTAAGACCAAGAGAGTTGCATCAATATATATCCAAGCAAGCTGGTGGGGTAGAGACTGTCGGTTTTACAAGCCAAGACCTTAAGAATTTGCTTAAAACCAAAAGGAAGCAATCACTAAAGTACGGTGAAGTGGGTGCCTTGATGACATATTTCAAACAAGAAAGTGATAATCCATCATTCTTTTATGATTTTCAAATGGATGTTGATGAGCTAATAACAAATATATTTTGGGTGGATGCACAGATGATTAATGATTATGGATACTTTGGTGATATCATCACTTTTGACACCACTTACAAGACAAATAAGGATTATCGACCTTTGGGTGTATTTGTTGGACTTAATAATCACAGACAAACCGTCATTTTTGGGGCAACATTGTTATATGATGAAACAATTCCTTCTTTTCAGTGGTTATTTGAAACTTTTCTGAAAGCAATGGGTGGAGAAAAGCCTAAAACCATTCTAACAGATCAAGATGCAGCAATGGCTAAAGCTATTTCTTTAGTTATGCCAAAAACATTTCATGGATTGTGCACTTGGCATATAAGACAGAATGCTCTTAGGCATGTGAACCATCTATATCAAAAGAGTTCGAGATTCCGTTTGGATTTTGAAGCATGCATAGATCTACACGAGGAGGAAAGTGAATTTTTGAATGAATGGAATTCTTTACTTGTTGATCATAATGTTTTGAAAGATTCGTGGTTGCATTCAATTTTTAAATTGAAGGAAAAATGGGCATGGGCTTATGTTCGGAAAACATTCACGGCAGGTATGCGATCTACTCAATTAAGTGAGAGCTTTAATGCTGATTTGAAAAACCATTTGAAGTCAGATATAAATTTGGTACAATTTTTTACTCACTTTAAAAGGGCTGTCAATGCTAAACGGAACAATGAGTCAGAAGCAGAATATGATTCAAGACATAAGCTGCCTAAATTGAAAATGAAGAAGGCTCGTATGCTCTTACAAGCCGCAAATGTTTACACTCCAAATTTTTTTGAGGAATTTCAAGAGGAATATGAAGAATATCAAGATACTTGCATAAAGGAGGTGAAAGAAGGTTTGTATGTTATCACAAATTATGATGATGCAAAGGAGAGGATGGTAATGGGAAATCCTATGGAACAAAAAGTTTCTTGTGATTGTCATAAATTTGAGACACATGGCATCTTATGTAGTCATGCTTTGAAAGTTTTAGATGTCATGAACATTAAGTTAATTCCCGAACACTACATACTAAAACGATGGACAAGAGATGCAAGGCTGGGAAGTAATCAAGGTTGGAGTGGGAGGCATGTTGAATTAGACCAAAAAGCCCATTTCATGAAGCGGTACAATGAGTTATGTCCTCAGTTGCTTAAATTGACCAATAAAGCTTCAGAATCTCATGAAACTTACACATTTTTGTCCAAAGTTTATGAAGAGTCCAGCAAAATAGTTAATGATATGTTGTCCAAAAAATATCTGGATGGAGAATCAAGTGGAATGGTTCATGTATCCATATCAATTGCGAATGATGAAGTCGACAACAACATAGACACCGTTGGCAAGGCAAAAGGCATAAAGACGAAGGATTGTCCACGTAAGAGTAAAAAACGTTATATGTCTTGGCTTGAAAAAGAACGTAAAAAGACAAAGATGCGCTCAGAAAAAAAGAAAAAATCTCAAGAAGGTTTAGTACAATCGTTACCGGTACGTATATTTTTTTGTATCAATTTGTTAGATTTTGTTTAACCTATCATTTATTTAACTTTTCTTGTATTATGCAGCAATCAAGCAACACAATTCAAGCTACACAACCAAGCCAAGTAAGCAATGAAACTCAACATCAAGATACAATCCAAGCAACACAATCAAGCCAAGTTAACTCATTGTAA

Protein sequence

>MS.gene74846.t1

MDSSSIPDCVDKWVNNIHEQNVHHEKESIANSGPHLGMQFESEAVAYEFYNDYSKRIGFDICREYGNKSIIDGVLTSRRFTCFKKGAKVVDKRRQPTAESRAETRTGCTTHMVISLDRNIGKYMVVDFEAQHNHLLVPPEYVHMIRSHRHISEAQASQIVLGDESGLRPRELHQYISKQAGGVETVGFTSQDLKNLLKTKRKQSLKYGEVGALMTYFKQESDNPSFFYDFQMDVDELITNIFWVDAQMINDYGYFGDIITFDTTYKTNKDYRPLGVFVGLNNHRQTVIFGATLLYDETIPSFQWLFETFLKAMGGEKPKTILTDQDAAMAKAISLVMPKTFHGLCTWHIRQNALRHVNHLYQKSSRFRLDFEACIDLHEEESEFLNEWNSLLVDHNVLKDSWLHSIFKLKEKWAWAYVRKTFTAGMRSTQLSESFNADLKNHLKSDINLVQFFTHFKRAVNAKRNNESEAEYDSRHKLPKLKMKKARMLLQAANVYTPNFFEEFQEEYEEYQDTCIKEVKEGLYVITNYDDAKERMVMGNPMEQKVSCDCHKFETHGILCSHALKVLDVMNIKLIPEHYILKRWTRDARLGSNQGWSGRHVELDQKAHFMKRYNELCPQLLKLTNKASESHETYTFLSKVYEESSKIVNDMLSKKYLDGESSGMVHVSISIANDEVDNNIDTVGKAKGIKTKDCPRKSKKRYMSWLEKERKKTKMRSEKKKKSQEGLVQSLPQSSNTIQATQPSQVSNETQHQDTIQATQSSQVNSL