Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74934.t1 | XP_013470329.1 | 93.2 | 527 | 27 | 4 | 1 | 526 | 1 | 519 | 7.60E-269 | 936 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74934.t1 | Q9ZVX2 | 47.6 | 536 | 242 | 14 | 6 | 529 | 5 | 513 | 3.5e-105 | 383.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74934.t1 | A0A072VRJ5 | 93.2 | 527 | 27 | 4 | 1 | 526 | 1 | 519 | 5.5e-269 | 936.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene74934.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74934.t1 | MTR_1g112680 | 94.307 | 527 | 21 | 4 | 1 | 526 | 1 | 519 | 0.0 | 1011 |
MS.gene74934.t1 | MTR_8g064700 | 28.872 | 523 | 256 | 13 | 10 | 523 | 4 | 419 | 2.18e-60 | 205 |
MS.gene74934.t1 | MTR_3g498695 | 34.634 | 205 | 114 | 2 | 316 | 520 | 293 | 477 | 5.50e-33 | 132 |
MS.gene74934.t1 | MTR_3g498695 | 34.146 | 205 | 114 | 2 | 316 | 520 | 293 | 476 | 3.32e-32 | 129 |
MS.gene74934.t1 | MTR_7g083900 | 36.275 | 204 | 107 | 4 | 320 | 520 | 285 | 468 | 7.01e-31 | 125 |
MS.gene74934.t1 | MTR_7g083900 | 36.275 | 204 | 106 | 4 | 320 | 520 | 285 | 467 | 1.29e-30 | 125 |
MS.gene74934.t1 | MTR_3g030700 | 33.166 | 199 | 103 | 4 | 311 | 505 | 186 | 358 | 3.55e-25 | 107 |
MS.gene74934.t1 | MTR_2g081040 | 30.348 | 201 | 120 | 3 | 320 | 520 | 176 | 356 | 8.60e-25 | 106 |
MS.gene74934.t1 | MTR_3g104100 | 28.718 | 195 | 122 | 1 | 320 | 514 | 194 | 371 | 1.23e-22 | 100 |
MS.gene74934.t1 | MTR_2g038040 | 35.233 | 193 | 106 | 5 | 314 | 503 | 45 | 221 | 4.71e-22 | 95.9 |
MS.gene74934.t1 | MTR_4g091990 | 30.000 | 220 | 100 | 5 | 285 | 496 | 3 | 176 | 3.66e-20 | 89.0 |
MS.gene74934.t1 | MTR_4g091910 | 33.529 | 170 | 81 | 3 | 320 | 489 | 46 | 183 | 4.92e-20 | 89.0 |
MS.gene74934.t1 | MTR_2g084280 | 31.034 | 174 | 81 | 4 | 306 | 476 | 121 | 258 | 7.74e-18 | 84.7 |
MS.gene74934.t1 | MTR_4g057270 | 31.176 | 170 | 70 | 5 | 315 | 472 | 143 | 277 | 3.03e-17 | 83.6 |
MS.gene74934.t1 | MTR_3g111290 | 27.962 | 211 | 108 | 4 | 309 | 519 | 161 | 327 | 7.72e-16 | 79.3 |
MS.gene74934.t1 | MTR_1g072320 | 28.972 | 214 | 118 | 6 | 315 | 518 | 459 | 648 | 4.74e-15 | 78.6 |
MS.gene74934.t1 | MTR_8g024790 | 30.180 | 222 | 113 | 9 | 300 | 511 | 268 | 457 | 8.80e-15 | 77.0 |
MS.gene74934.t1 | MTR_5g030770 | 29.609 | 179 | 90 | 3 | 309 | 487 | 144 | 286 | 1.27e-14 | 75.5 |
MS.gene74934.t1 | MTR_5g030770 | 54.930 | 71 | 32 | 0 | 309 | 379 | 144 | 214 | 2.28e-14 | 74.7 |
MS.gene74934.t1 | MTR_5g014600 | 29.570 | 186 | 110 | 7 | 314 | 498 | 142 | 307 | 1.07e-13 | 72.8 |
MS.gene74934.t1 | MTR_7g096350 | 42.045 | 88 | 50 | 1 | 289 | 376 | 324 | 410 | 1.96e-13 | 73.2 |
MS.gene74934.t1 | MTR_8g098275 | 29.630 | 189 | 110 | 6 | 301 | 478 | 288 | 464 | 2.77e-13 | 72.8 |
MS.gene74934.t1 | MTR_8g098275 | 29.630 | 189 | 110 | 6 | 301 | 478 | 224 | 400 | 3.04e-13 | 72.4 |
MS.gene74934.t1 | MTR_0246s0020 | 26.012 | 173 | 104 | 4 | 313 | 484 | 190 | 339 | 3.59e-13 | 71.6 |
MS.gene74934.t1 | MTR_0246s0020 | 26.012 | 173 | 104 | 4 | 313 | 484 | 190 | 339 | 3.99e-13 | 71.6 |
MS.gene74934.t1 | MTR_8g098275 | 29.630 | 189 | 110 | 6 | 301 | 478 | 381 | 557 | 4.47e-13 | 72.0 |
MS.gene74934.t1 | MTR_5g030430 | 27.679 | 224 | 126 | 8 | 305 | 518 | 472 | 669 | 1.06e-12 | 71.2 |
MS.gene74934.t1 | MTR_8g027495 | 54.545 | 55 | 25 | 0 | 325 | 379 | 462 | 516 | 1.18e-12 | 70.9 |
MS.gene74934.t1 | MTR_0250s0040 | 27.528 | 178 | 102 | 4 | 307 | 484 | 74 | 224 | 1.18e-12 | 68.6 |
MS.gene74934.t1 | MTR_7g117670 | 55.556 | 54 | 24 | 0 | 325 | 378 | 406 | 459 | 3.27e-12 | 69.3 |
MS.gene74934.t1 | MTR_8g067280 | 29.268 | 164 | 94 | 4 | 325 | 485 | 466 | 610 | 6.96e-12 | 68.6 |
MS.gene74934.t1 | MTR_8g024770 | 40.260 | 77 | 44 | 1 | 300 | 374 | 256 | 332 | 8.69e-12 | 67.8 |
MS.gene74934.t1 | MTR_5g014640 | 33.000 | 100 | 60 | 1 | 293 | 385 | 119 | 218 | 1.58e-11 | 66.2 |
MS.gene74934.t1 | MTR_5g014520 | 42.222 | 90 | 47 | 3 | 308 | 397 | 145 | 229 | 2.38e-11 | 65.5 |
MS.gene74934.t1 | MTR_4g092700 | 49.091 | 55 | 28 | 0 | 322 | 376 | 159 | 213 | 4.37e-11 | 64.7 |
MS.gene74934.t1 | MTR_6g047570 | 29.255 | 188 | 101 | 7 | 299 | 484 | 138 | 295 | 7.74e-11 | 63.9 |
MS.gene74934.t1 | MTR_5g014560 | 32.540 | 126 | 70 | 3 | 252 | 376 | 75 | 186 | 8.68e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74934.t1 | AT2G16910 | 46.898 | 548 | 228 | 17 | 6 | 529 | 5 | 513 | 1.14e-145 | 431 |
MS.gene74934.t1 | AT3G26744 | 35.979 | 189 | 98 | 2 | 320 | 505 | 306 | 474 | 8.21e-31 | 125 |
MS.gene74934.t1 | AT3G26744 | 35.979 | 189 | 98 | 2 | 320 | 505 | 306 | 474 | 8.21e-31 | 125 |
MS.gene74934.t1 | AT3G26744 | 35.979 | 189 | 98 | 2 | 320 | 505 | 306 | 474 | 8.21e-31 | 125 |
MS.gene74934.t1 | AT3G26744 | 36.813 | 182 | 92 | 2 | 320 | 498 | 306 | 467 | 2.40e-30 | 124 |
MS.gene74934.t1 | AT1G12860 | 35.323 | 201 | 106 | 3 | 320 | 520 | 266 | 442 | 9.70e-30 | 122 |
MS.gene74934.t1 | AT1G12860 | 36.313 | 179 | 93 | 2 | 320 | 498 | 266 | 423 | 7.95e-29 | 119 |
MS.gene74934.t1 | AT1G10610 | 35.404 | 161 | 88 | 4 | 7 | 157 | 8 | 162 | 7.92e-25 | 107 |
MS.gene74934.t1 | AT1G10610 | 25.962 | 208 | 116 | 4 | 319 | 521 | 262 | 436 | 8.14e-16 | 80.1 |
MS.gene74934.t1 | AT5G57150 | 32.212 | 208 | 117 | 5 | 303 | 505 | 32 | 220 | 2.53e-20 | 90.9 |
MS.gene74934.t1 | AT5G57150 | 32.338 | 201 | 112 | 5 | 303 | 498 | 32 | 213 | 5.15e-20 | 89.4 |
MS.gene74934.t1 | AT5G57150 | 32.338 | 201 | 112 | 5 | 303 | 498 | 33 | 214 | 7.51e-20 | 89.0 |
MS.gene74934.t1 | AT5G57150 | 32.338 | 201 | 112 | 5 | 303 | 498 | 33 | 214 | 7.75e-20 | 89.0 |
MS.gene74934.t1 | AT5G57150 | 32.338 | 201 | 112 | 5 | 303 | 498 | 33 | 214 | 1.08e-19 | 89.4 |
MS.gene74934.t1 | AT2G28160 | 30.061 | 163 | 89 | 4 | 313 | 475 | 123 | 260 | 6.69e-17 | 82.4 |
MS.gene74934.t1 | AT2G28160 | 30.061 | 163 | 89 | 4 | 313 | 475 | 123 | 260 | 7.18e-17 | 82.0 |
MS.gene74934.t1 | AT4G21330 | 28.155 | 206 | 118 | 4 | 319 | 524 | 30 | 205 | 7.73e-17 | 79.7 |
MS.gene74934.t1 | AT1G10610 | 32.836 | 134 | 75 | 3 | 33 | 157 | 5 | 132 | 1.12e-16 | 82.8 |
MS.gene74934.t1 | AT1G10610 | 25.962 | 208 | 116 | 4 | 319 | 521 | 232 | 406 | 8.06e-16 | 80.1 |
MS.gene74934.t1 | AT5G46760 | 31.677 | 161 | 87 | 4 | 325 | 485 | 419 | 556 | 1.69e-16 | 83.2 |
MS.gene74934.t1 | AT5G65640 | 28.959 | 221 | 122 | 5 | 309 | 529 | 166 | 351 | 5.24e-16 | 80.1 |
MS.gene74934.t1 | AT1G63650 | 30.814 | 172 | 102 | 4 | 324 | 491 | 408 | 566 | 6.22e-16 | 81.3 |
MS.gene74934.t1 | AT1G63650 | 30.814 | 172 | 102 | 4 | 324 | 491 | 408 | 566 | 6.22e-16 | 81.3 |
MS.gene74934.t1 | AT1G63650 | 30.814 | 172 | 102 | 4 | 324 | 491 | 408 | 566 | 6.22e-16 | 81.3 |
MS.gene74934.t1 | AT1G10610 | 26.486 | 185 | 103 | 3 | 319 | 498 | 165 | 321 | 6.70e-16 | 79.7 |
MS.gene74934.t1 | AT2G46510 | 44.086 | 93 | 47 | 1 | 306 | 393 | 375 | 467 | 8.64e-16 | 80.9 |
MS.gene74934.t1 | AT4G29930 | 30.928 | 194 | 124 | 5 | 320 | 512 | 53 | 237 | 8.75e-16 | 77.8 |
MS.gene74934.t1 | AT4G17880 | 29.570 | 186 | 99 | 5 | 305 | 485 | 395 | 553 | 6.43e-15 | 78.2 |
MS.gene74934.t1 | AT5G65640 | 57.746 | 71 | 30 | 0 | 309 | 379 | 166 | 236 | 6.43e-15 | 75.9 |
MS.gene74934.t1 | AT5G10570 | 29.717 | 212 | 103 | 6 | 311 | 517 | 138 | 308 | 6.91e-15 | 76.3 |
MS.gene74934.t1 | AT4G29930 | 30.508 | 177 | 115 | 4 | 320 | 495 | 53 | 222 | 8.97e-15 | 75.1 |
MS.gene74934.t1 | AT4G29930 | 30.508 | 177 | 115 | 4 | 320 | 495 | 53 | 222 | 8.97e-15 | 75.1 |
MS.gene74934.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 4.59e-14 | 71.2 |
MS.gene74934.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 5.90e-14 | 71.6 |
MS.gene74934.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 6.39e-14 | 71.6 |
MS.gene74934.t1 | AT4G29930 | 55.000 | 60 | 27 | 0 | 320 | 379 | 53 | 112 | 6.42e-14 | 72.0 |
MS.gene74934.t1 | AT5G46830 | 27.805 | 205 | 114 | 6 | 315 | 519 | 337 | 507 | 1.07e-12 | 70.9 |
MS.gene74934.t1 | AT4G37850 | 27.059 | 170 | 97 | 4 | 316 | 484 | 147 | 290 | 1.21e-12 | 69.7 |
MS.gene74934.t1 | AT4G37850 | 27.059 | 170 | 97 | 4 | 316 | 484 | 147 | 290 | 1.21e-12 | 69.7 |
MS.gene74934.t1 | AT5G41315 | 28.877 | 187 | 110 | 7 | 313 | 491 | 441 | 612 | 1.93e-12 | 70.5 |
MS.gene74934.t1 | AT5G41315 | 28.877 | 187 | 110 | 7 | 313 | 491 | 444 | 615 | 2.05e-12 | 70.1 |
MS.gene74934.t1 | AT1G01260 | 42.045 | 88 | 49 | 2 | 292 | 378 | 404 | 490 | 2.22e-12 | 70.1 |
MS.gene74934.t1 | AT1G01260 | 42.045 | 88 | 49 | 2 | 292 | 378 | 404 | 490 | 2.22e-12 | 70.1 |
MS.gene74934.t1 | AT1G01260 | 42.045 | 88 | 49 | 2 | 292 | 378 | 404 | 490 | 2.22e-12 | 70.1 |
MS.gene74934.t1 | AT5G41315 | 28.877 | 187 | 110 | 7 | 313 | 491 | 436 | 607 | 2.24e-12 | 70.1 |
MS.gene74934.t1 | AT4G09820 | 26.786 | 168 | 74 | 3 | 322 | 487 | 364 | 484 | 3.70e-12 | 69.3 |
MS.gene74934.t1 | AT4G16430 | 43.421 | 76 | 38 | 1 | 306 | 376 | 300 | 375 | 6.13e-12 | 68.2 |
MS.gene74934.t1 | AT1G32640 | 28.205 | 195 | 109 | 4 | 325 | 519 | 456 | 619 | 1.20e-11 | 67.8 |
MS.gene74934.t1 | AT2G22750 | 26.471 | 170 | 103 | 3 | 315 | 484 | 148 | 295 | 5.70e-11 | 64.3 |
MS.gene74934.t1 | AT2G22750 | 26.471 | 170 | 103 | 3 | 315 | 484 | 144 | 291 | 6.00e-11 | 64.3 |
MS.gene74934.t1 | AT2G22750 | 26.471 | 170 | 103 | 3 | 315 | 484 | 148 | 295 | 6.06e-11 | 64.3 |
MS.gene74934.t1 | AT4G00870 | 40.323 | 62 | 37 | 0 | 325 | 386 | 253 | 314 | 8.08e-11 | 64.7 |
MS.gene74934.t1 | AT2G22750 | 26.471 | 170 | 103 | 3 | 315 | 484 | 120 | 267 | 8.24e-11 | 63.5 |
MS.gene74934.t1 | AT2G22750 | 26.471 | 170 | 103 | 3 | 315 | 484 | 120 | 267 | 8.62e-11 | 63.5 |
Find 106 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGAACATTGTTATTATTATT+TGG | 0.155242 | 1.3:-76458006 | None:intergenic |
CTATCAAGCTTTGAGATTCT+TGG | 0.205780 | 1.3:-76457844 | None:intergenic |
CTCTTGTTGGTTTGAATGGC+TGG | 0.239275 | 1.3:+76455980 | MS.gene74934:CDS |
TGAAATCCATGTTCTGCTTT+TGG | 0.239465 | 1.3:-76458027 | None:intergenic |
CTTGATAGAGCATCTATTCT+TGG | 0.248227 | 1.3:+76457859 | MS.gene74934:CDS |
ATAGAATTATGAACAGAAAA+AGG | 0.296948 | 1.3:+76458552 | MS.gene74934:intron |
CAGCAACAAGGTTCTTTGAT+TGG | 0.308174 | 1.3:-76457765 | None:intergenic |
GTGGAAGTGGCTCAGATAGA+TGG | 0.338551 | 1.3:+76458270 | MS.gene74934:CDS |
GTTATATAACCTTCGTTCAT+TGG | 0.349149 | 1.3:+76457819 | MS.gene74934:CDS |
AGATCACAAGAGTTTGTTCT+TGG | 0.351468 | 1.3:-76456266 | None:intergenic |
GGTGTTCTTCTCCACCATTT+TGG | 0.356060 | 1.3:-76456202 | None:intergenic |
GAACTTACATGTAAAGTGTT+TGG | 0.359394 | 1.3:-76456487 | None:intergenic |
GAAGGAAGAAACTGAATGAT+AGG | 0.368436 | 1.3:+76457797 | MS.gene74934:CDS |
CAAATCTTCATGCTGGAACT+TGG | 0.371640 | 1.3:+76458633 | MS.gene74934:CDS |
AGACCTCTTGTTGGTTTGAA+TGG | 0.376737 | 1.3:+76455976 | MS.gene74934:CDS |
GTGTTTGGATCCAAGCTATT+GGG | 0.381111 | 1.3:-76456472 | None:intergenic |
TAGGTATGGAAGTGGAAAGT+TGG | 0.382059 | 1.3:-76456295 | None:intergenic |
ATTGGGATAGTTCAACCAAT+TGG | 0.386734 | 1.3:-76456455 | None:intergenic |
GATTCCAGTGCCTGGTGGAC+TGG | 0.406904 | 1.3:+76456640 | MS.gene74934:CDS |
CAGAACATGGATTTCATGTT+GGG | 0.411727 | 1.3:+76458034 | MS.gene74934:CDS |
TATATATACCCTGAATCTAT+AGG | 0.413784 | 1.3:-76456314 | None:intergenic |
TGAGCTCTTTGTAACTAAAC+AGG | 0.419409 | 1.3:+76456664 | MS.gene74934:CDS |
GGTTGGGATGTTGTTGTGGT+GGG | 0.420257 | 1.3:+76456168 | MS.gene74934:CDS |
AAGAGGATGATGGAAAATAT+AGG | 0.425274 | 1.3:+76457722 | MS.gene74934:CDS |
AGTGTTTGGATCCAAGCTAT+TGG | 0.426318 | 1.3:-76456473 | None:intergenic |
ACTTCCATACCTATAGATTC+AGG | 0.426419 | 1.3:+76456305 | MS.gene74934:CDS |
TTTCCCTGTCTCTTCATGTA+GGG | 0.439137 | 1.3:+76456226 | MS.gene74934:CDS |
TTGGGATAGTTCAACCAATT+GGG | 0.440118 | 1.3:-76456454 | None:intergenic |
TATTAACTAACCAACCCAAT+TGG | 0.442270 | 1.3:+76456440 | MS.gene74934:CDS |
TATAGGAGAAGAAGTGGAAA+AGG | 0.445604 | 1.3:+76457739 | MS.gene74934:CDS |
AGGTATGGAAGTGGAAAGTT+GGG | 0.445933 | 1.3:-76456294 | None:intergenic |
GAAGGGATGAACCACTCAAT+TGG | 0.446434 | 1.3:+76457301 | MS.gene74934:CDS |
GAGAGATTAAGACCTCTTGT+TGG | 0.450531 | 1.3:+76455967 | MS.gene74934:CDS |
ATGGAGGCTTTGAACACTTT+AGG | 0.460171 | 1.3:+76458351 | MS.gene74934:CDS |
TTATATATAGGTATCTTGAA+TGG | 0.460510 | 1.3:+76456147 | MS.gene74934:intron |
AGTAACTGTGTATATGTTGA+TGG | 0.466614 | 1.3:+76457970 | MS.gene74934:CDS |
TGGTTGGGATGTTGTTGTGG+TGG | 0.468844 | 1.3:+76456167 | MS.gene74934:CDS |
ATATAGGTATCTTGAATGGT+TGG | 0.468983 | 1.3:+76456151 | MS.gene74934:intron |
GCAGAACATGGATTTCATGT+TGG | 0.469960 | 1.3:+76458033 | MS.gene74934:CDS |
GGAAAATATAGGAGAAGAAG+TGG | 0.472548 | 1.3:+76457733 | MS.gene74934:CDS |
GATCACAAGAGTTTGTTCTT+GGG | 0.473126 | 1.3:-76456265 | None:intergenic |
TCTTGTTGGTTTGAATGGCT+GGG | 0.473478 | 1.3:+76455981 | MS.gene74934:CDS |
GATTCAATGTCTCTGATGAA+TGG | 0.473958 | 1.3:-76457402 | None:intergenic |
AAGAAGCAAGAACATGTTGT+TGG | 0.475916 | 1.3:+76457658 | MS.gene74934:CDS |
GCTGGGATTACTGTGTCTAC+TGG | 0.476054 | 1.3:+76455998 | MS.gene74934:CDS |
GGCTTTGAACACTTTAGGCA+TGG | 0.486692 | 1.3:+76458356 | MS.gene74934:CDS |
ATGAATATTGCAGGCACAAG+TGG | 0.489997 | 1.3:+76458251 | MS.gene74934:intron |
TATAGGTATCTTGAATGGTT+GGG | 0.493698 | 1.3:+76456152 | MS.gene74934:intron |
TAATAATCAATATATGTTTG+TGG | 0.498103 | 1.3:+76457618 | MS.gene74934:CDS |
GTTGAACTATCCCAATAGCT+TGG | 0.501147 | 1.3:+76456462 | MS.gene74934:CDS |
CAGAATGAAGAAGAGGATGA+TGG | 0.501916 | 1.3:+76457712 | MS.gene74934:CDS |
ATTGAACAGGATTCATGCAC+AGG | 0.504490 | 1.3:+76456414 | MS.gene74934:intron |
TTCTCTTCCTCTCAGCAACA+AGG | 0.506548 | 1.3:-76457777 | None:intergenic |
GAATGGTTGGGATGTTGTTG+TGG | 0.510919 | 1.3:+76456164 | MS.gene74934:CDS |
GTATCCCTACATGAAGAGAC+AGG | 0.511754 | 1.3:-76456230 | None:intergenic |
ATACCCTGAATCTATAGGTA+TGG | 0.513797 | 1.3:-76456309 | None:intergenic |
GGGAGTGAAAGCAACCAAAA+TGG | 0.520448 | 1.3:+76456188 | MS.gene74934:CDS |
TGGAAGTGGCTCAGATAGAT+GGG | 0.522256 | 1.3:+76458271 | MS.gene74934:CDS |
TGAGACAAGACCCTTGTGAC+TGG | 0.522381 | 1.3:-76458400 | None:intergenic |
CATGGATTTCATGTTGGGAA+TGG | 0.525371 | 1.3:+76458039 | MS.gene74934:CDS |
ATTGCAGGCACAAGTGGAAG+TGG | 0.525672 | 1.3:+76458257 | MS.gene74934:intron |
TGAATCTATAGGTATGGAAG+TGG | 0.528440 | 1.3:-76456303 | None:intergenic |
CACGGAACAAATCTTCATGC+TGG | 0.531543 | 1.3:+76458626 | MS.gene74934:CDS |
CTTCCATACCTATAGATTCA+GGG | 0.537250 | 1.3:+76456306 | MS.gene74934:CDS |
ATGCAATCGAATCCAATTGT+GGG | 0.539218 | 1.3:+76457343 | MS.gene74934:CDS |
ACCTTGGTATTCTTCAGAGA+AGG | 0.541843 | 1.3:-76457512 | None:intergenic |
CTATGTTTCAAAACAAAAGC+AGG | 0.545019 | 1.3:+76458062 | MS.gene74934:CDS |
GGAAATTAAGTGAAGATCAA+AGG | 0.546606 | 1.3:+76456019 | MS.gene74934:CDS |
CATGCAATCGAATCCAATTG+TGG | 0.546804 | 1.3:+76457342 | MS.gene74934:CDS |
GATAGTTCAACCAATTGGGT+TGG | 0.554141 | 1.3:-76456450 | None:intergenic |
TACATGAAGAGACAGGGAAA+AGG | 0.554895 | 1.3:-76456223 | None:intergenic |
TTGAATTGAAACCAATTGAG+TGG | 0.557955 | 1.3:-76457312 | None:intergenic |
CAGGCACTGGAATCAAAACA+TGG | 0.559119 | 1.3:-76456631 | None:intergenic |
CAGTGATCAGAATGAAGAAG+AGG | 0.559858 | 1.3:+76457705 | MS.gene74934:CDS |
TTGTTGCTGAGAGGAAGAGA+AGG | 0.562094 | 1.3:+76457779 | MS.gene74934:CDS |
AAGAGCTCAACCAGTCCACC+AGG | 0.565516 | 1.3:-76456650 | None:intergenic |
ATCAATTTCACAAAACCACC+TGG | 0.575508 | 1.3:-76458330 | None:intergenic |
TCAACCAGTCCACCAGGCAC+TGG | 0.579883 | 1.3:-76456644 | None:intergenic |
GATCCTGAAGAAAAGAACCT+TGG | 0.582504 | 1.3:-76457528 | None:intergenic |
AAACAAAAGCAGGAAGATGT+TGG | 0.583119 | 1.3:+76458072 | MS.gene74934:CDS |
ATCTCAATGCATTGTCATGG+TGG | 0.583356 | 1.3:+76457273 | MS.gene74934:CDS |
TGACAAGCAGACACAGCAGA+TGG | 0.586592 | 1.3:+76458104 | MS.gene74934:CDS |
AAAGGAGAGTGAAATAGTTG+AGG | 0.586665 | 1.3:+76458570 | MS.gene74934:CDS |
CACATCTCAATGCATTGTCA+TGG | 0.588350 | 1.3:+76457270 | MS.gene74934:CDS |
TTCAATACAGATATGTCATG+TGG | 0.598259 | 1.3:-76457427 | None:intergenic |
AGAGCTTCAAGATGAACTTG+AGG | 0.601650 | 1.3:+76457924 | MS.gene74934:CDS |
AATGTTCCAAAAGCAGAACA+TGG | 0.606756 | 1.3:+76458021 | MS.gene74934:CDS |
TCTCAAATCACACACAGAAG+AGG | 0.606938 | 1.3:+76457567 | MS.gene74934:CDS |
ATTGTCATGGTGGATCAAGA+AGG | 0.607678 | 1.3:+76457283 | MS.gene74934:CDS |
CAAAGAACCTTGTTGCTGAG+AGG | 0.619036 | 1.3:+76457770 | MS.gene74934:CDS |
CTTGAGGAAAATTCAGACAC+AGG | 0.625559 | 1.3:+76457940 | MS.gene74934:CDS |
TGCCACAGTAACCAGTCACA+AGG | 0.625627 | 1.3:+76458389 | MS.gene74934:CDS |
AGATGCTATTGAATTTGTGA+AGG | 0.628469 | 1.3:+76457882 | MS.gene74934:CDS |
CAGCCATTCAAACCAACAAG+AGG | 0.632565 | 1.3:-76455979 | None:intergenic |
ATTGTGGGTGATGAAAATGA+TGG | 0.641485 | 1.3:+76457358 | MS.gene74934:CDS |
AGTGAAAGCAACCAAAATGG+TGG | 0.646392 | 1.3:+76456191 | MS.gene74934:CDS |
ATTCACTACTAGAGCTGACA+CGG | 0.647595 | 1.3:+76458608 | MS.gene74934:CDS |
TTCTTGGAACCAATGAACGA+AGG | 0.654816 | 1.3:-76457828 | None:intergenic |
ACCCTTGTGACTGGTTACTG+TGG | 0.657104 | 1.3:-76458391 | None:intergenic |
TTGTCATGGTGGATCAAGAA+GGG | 0.669108 | 1.3:+76457284 | MS.gene74934:CDS |
TGGGAATGAGTACTTTGTGA+AGG | 0.678653 | 1.3:+76458290 | MS.gene74934:CDS |
CAAGCAGACACAGCAGATGG+AGG | 0.682677 | 1.3:+76458107 | MS.gene74934:CDS |
TATCCCTACATGAAGAGACA+GGG | 0.687876 | 1.3:-76456229 | None:intergenic |
ACCTTCTCTGAAGAATACCA+AGG | 0.692673 | 1.3:+76457511 | MS.gene74934:CDS |
GCCACAGTAACCAGTCACAA+GGG | 0.696830 | 1.3:+76458390 | MS.gene74934:CDS |
AGGCACTGGAATCAAAACAT+GGG | 0.706180 | 1.3:-76456630 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATATACTAATAACAA+AGG | + | chr1.3:76458155-76458174 | MS.gene74934:intron | 10.0% |
!! | AGTTATTAGTATATTTATTT+AGG | - | chr1.3:76457196-76457215 | None:intergenic | 10.0% |
!! | ATATAATAGAACAAAAAATA+TGG | - | chr1.3:76456079-76456098 | None:intergenic | 10.0% |
!!! | ATGATATTAAATTTTTTTCT+TGG | + | chr1.3:76458520-76458539 | MS.gene74934:intron | 10.0% |
!!! | TAAATTTTAAATTAAGCTAA+AGG | - | chr1.3:76456761-76456780 | None:intergenic | 10.0% |
!!! | TGATATTAAATTTTTTTCTT+GGG | + | chr1.3:76458521-76458540 | MS.gene74934:intron | 10.0% |
!! | AAAATAGTACTCAATATATA+TGG | - | chr1.3:76456589-76456608 | None:intergenic | 15.0% |
!! | AAAGGATTATATATAGATAA+AGG | - | chr1.3:76456385-76456404 | None:intergenic | 15.0% |
!! | AAGGATTATATATAGATAAA+GGG | - | chr1.3:76456384-76456403 | None:intergenic | 15.0% |
!! | CATAATAAAAATATGAAGTT+CGG | + | chr1.3:76457067-76457086 | MS.gene74934:intron | 15.0% |
!! | TAATAATCAATATATGTTTG+TGG | + | chr1.3:76457618-76457637 | MS.gene74934:CDS | 15.0% |
!!! | ACTTTTTTGAATTATTATCA+AGG | + | chr1.3:76457034-76457053 | MS.gene74934:intron | 15.0% |
!!! | ATTTGTTGGTTTTTATATAT+AGG | + | chr1.3:76456135-76456154 | MS.gene74934:intron | 15.0% |
!!! | TATAAATTTTAGTATAAGCT+AGG | - | chr1.3:76458143-76458162 | None:intergenic | 15.0% |
!! | AAGTTAAGAAAATGATTCTA+AGG | - | chr1.3:76458451-76458470 | None:intergenic | 20.0% |
!! | AGACAAATTCAAATCAAAAT+AGG | + | chr1.3:76458487-76458506 | MS.gene74934:intron | 20.0% |
!! | AGATGAATTAGTTGAAAAAT+AGG | - | chr1.3:76456528-76456547 | None:intergenic | 20.0% |
!! | ATAGAATTATGAACAGAAAA+AGG | + | chr1.3:76458552-76458571 | MS.gene74934:intron | 20.0% |
!! | ATTATATATAGATAAAGGGA+GGG | - | chr1.3:76456380-76456399 | None:intergenic | 20.0% |
!! | TATAAGTAGGTAGATATAAA+TGG | + | chr1.3:76456724-76456743 | MS.gene74934:intron | 20.0% |
!! | TCATTGAATGATATACTATA+AGG | + | chr1.3:76456876-76456895 | MS.gene74934:intron | 20.0% |
!! | TTATATATAGGTATCTTGAA+TGG | + | chr1.3:76456147-76456166 | MS.gene74934:intron | 20.0% |
!!! | GGAACATTGTTATTATTATT+TGG | - | chr1.3:76458009-76458028 | None:intergenic | 20.0% |
!!! | TAAGATCATGTTAATTTTGA+TGG | + | chr1.3:76456975-76456994 | MS.gene74934:intron | 20.0% |
!!! | TAATTGTGATGTTAATTTGT+TGG | + | chr1.3:76456121-76456140 | MS.gene74934:intron | 20.0% |
!!! | TGAATTATTATCAAGGTTTT+TGG | + | chr1.3:76457041-76457060 | MS.gene74934:intron | 20.0% |
!!! | TTTTTCAACTAATTCATCTT+TGG | + | chr1.3:76456529-76456548 | MS.gene74934:intron | 20.0% |
! | GATTATATATAGATAAAGGG+AGG | - | chr1.3:76456381-76456400 | None:intergenic | 25.0% |
! | GCTTAATTTACATATTGAAC+TGG | + | chr1.3:76456816-76456835 | MS.gene74934:intron | 25.0% |
! | TATATATACCCTGAATCTAT+AGG | - | chr1.3:76456317-76456336 | None:intergenic | 25.0% |
! | TATATGGAATTAGCTGAAAA+AGG | - | chr1.3:76456573-76456592 | None:intergenic | 25.0% |
! | TTAGAAACACACATATAAGT+AGG | + | chr1.3:76456711-76456730 | MS.gene74934:intron | 25.0% |
! | TTCTCTGTGTATAATATAAC+AGG | + | chr1.3:76457216-76457235 | MS.gene74934:intron | 25.0% |
!! | TTTTGCAGGAAACAATTAAT+GGG | + | chr1.3:76456606-76456625 | MS.gene74934:intron | 25.0% |
!! | TTTTTGCAGGAAACAATTAA+TGG | + | chr1.3:76456605-76456624 | MS.gene74934:intron | 25.0% |
!!! | ATATTGAGTACTATTTTTGC+AGG | + | chr1.3:76456592-76456611 | MS.gene74934:intron | 25.0% |
!!! | CTCAAATGTTTTTAAAGTTG+AGG | + | chr1.3:76458419-76458438 | MS.gene74934:CDS | 25.0% |
AGATGCTATTGAATTTGTGA+AGG | + | chr1.3:76457882-76457901 | MS.gene74934:CDS | 30.0% | |
AGTAACTGTGTATATGTTGA+TGG | + | chr1.3:76457970-76457989 | MS.gene74934:CDS | 30.0% | |
ATATAGGTATCTTGAATGGT+TGG | + | chr1.3:76456151-76456170 | MS.gene74934:intron | 30.0% | |
CACATGAATATGAATATTGC+AGG | + | chr1.3:76458242-76458261 | MS.gene74934:intron | 30.0% | |
CACTTTACATGTAAGTTCAT+TGG | + | chr1.3:76456492-76456511 | MS.gene74934:intron | 30.0% | |
CTATGTTTCAAAACAAAAGC+AGG | + | chr1.3:76458062-76458081 | MS.gene74934:CDS | 30.0% | |
CTGTGTATAATATAACAGGT+TGG | + | chr1.3:76457220-76457239 | MS.gene74934:intron | 30.0% | |
CTGTTCAATGAAGAGATTAA+AGG | - | chr1.3:76456403-76456422 | None:intergenic | 30.0% | |
CTTTAATCTCTTCATTGAAC+AGG | + | chr1.3:76456401-76456420 | MS.gene74934:intron | 30.0% | |
GGAAATTAAGTGAAGATCAA+AGG | + | chr1.3:76456019-76456038 | MS.gene74934:CDS | 30.0% | |
GGTCTAATTATGATGTTGAA+GGG | - | chr1.3:76456911-76456930 | None:intergenic | 30.0% | |
GTTATATAACCTTCGTTCAT+TGG | + | chr1.3:76457819-76457838 | MS.gene74934:CDS | 30.0% | |
TATAGGTATCTTGAATGGTT+GGG | + | chr1.3:76456152-76456171 | MS.gene74934:intron | 30.0% | |
TATTAACTAACCAACCCAAT+TGG | + | chr1.3:76456440-76456459 | MS.gene74934:CDS | 30.0% | |
TGATCTTGATGTTGTTAACT+GGG | - | chr1.3:76456934-76456953 | None:intergenic | 30.0% | |
TTCAATACAGATATGTCATG+TGG | - | chr1.3:76457430-76457449 | None:intergenic | 30.0% | |
TTGAATTGAAACCAATTGAG+TGG | - | chr1.3:76457315-76457334 | None:intergenic | 30.0% | |
! | GAACTTACATGTAAAGTGTT+TGG | - | chr1.3:76456490-76456509 | None:intergenic | 30.0% |
!! | AAGAGGATGATGGAAAATAT+AGG | + | chr1.3:76457722-76457741 | MS.gene74934:CDS | 30.0% |
!! | TATAAAAGCGTCAAAGATGT+TGG | - | chr1.3:76457094-76457113 | None:intergenic | 30.0% |
!!! | GCTTCTTTTTTGTGTCTAAT+GGG | - | chr1.3:76457645-76457664 | None:intergenic | 30.0% |
!!! | TGCTTCTTTTTTGTGTCTAA+TGG | - | chr1.3:76457646-76457665 | None:intergenic | 30.0% |
AAACAAAAGCAGGAAGATGT+TGG | + | chr1.3:76458072-76458091 | MS.gene74934:CDS | 35.0% | |
AAAGGAGAGTGAAATAGTTG+AGG | + | chr1.3:76458570-76458589 | MS.gene74934:CDS | 35.0% | |
AAGAAGCAAGAACATGTTGT+TGG | + | chr1.3:76457658-76457677 | MS.gene74934:CDS | 35.0% | |
AATGTTCCAAAAGCAGAACA+TGG | + | chr1.3:76458021-76458040 | MS.gene74934:CDS | 35.0% | |
ACTTCCATACCTATAGATTC+AGG | + | chr1.3:76456305-76456324 | MS.gene74934:CDS | 35.0% | |
ATACCCTGAATCTATAGGTA+TGG | - | chr1.3:76456312-76456331 | None:intergenic | 35.0% | |
ATCAATTTCACAAAACCACC+TGG | - | chr1.3:76458333-76458352 | None:intergenic | 35.0% | |
ATCTTGATGTTGTTAACTGG+GGG | - | chr1.3:76456932-76456951 | None:intergenic | 35.0% | |
ATGCAATCGAATCCAATTGT+GGG | + | chr1.3:76457343-76457362 | MS.gene74934:CDS | 35.0% | |
ATTGGGATAGTTCAACCAAT+TGG | - | chr1.3:76456458-76456477 | None:intergenic | 35.0% | |
ATTGTGGGTGATGAAAATGA+TGG | + | chr1.3:76457358-76457377 | MS.gene74934:CDS | 35.0% | |
CAGAACATGGATTTCATGTT+GGG | + | chr1.3:76458034-76458053 | MS.gene74934:CDS | 35.0% | |
CTTCCATACCTATAGATTCA+GGG | + | chr1.3:76456306-76456325 | MS.gene74934:CDS | 35.0% | |
GAAGGAAGAAACTGAATGAT+AGG | + | chr1.3:76457797-76457816 | MS.gene74934:CDS | 35.0% | |
GATCTTGATGTTGTTAACTG+GGG | - | chr1.3:76456933-76456952 | None:intergenic | 35.0% | |
GATTCAATGTCTCTGATGAA+TGG | - | chr1.3:76457405-76457424 | None:intergenic | 35.0% | |
GGAAAATATAGGAGAAGAAG+TGG | + | chr1.3:76457733-76457752 | MS.gene74934:CDS | 35.0% | |
GGGTCTAATTATGATGTTGA+AGG | - | chr1.3:76456912-76456931 | None:intergenic | 35.0% | |
GTGATCTTGATGTTGTTAAC+TGG | - | chr1.3:76456935-76456954 | None:intergenic | 35.0% | |
TATAGGAGAAGAAGTGGAAA+AGG | + | chr1.3:76457739-76457758 | MS.gene74934:CDS | 35.0% | |
TGAATCTATAGGTATGGAAG+TGG | - | chr1.3:76456306-76456325 | None:intergenic | 35.0% | |
TGAGCTCTTTGTAACTAAAC+AGG | + | chr1.3:76456664-76456683 | MS.gene74934:CDS | 35.0% | |
TTGGGATAGTTCAACCAATT+GGG | - | chr1.3:76456457-76456476 | None:intergenic | 35.0% | |
TTTAGGCAAAACTGCATCAA+AGG | - | chr1.3:76457179-76457198 | None:intergenic | 35.0% | |
! | AGATCACAAGAGTTTGTTCT+TGG | - | chr1.3:76456269-76456288 | None:intergenic | 35.0% |
! | ATACCAAGGTTCTTTTCTTC+AGG | + | chr1.3:76457525-76457544 | MS.gene74934:CDS | 35.0% |
! | CTTGATAGAGCATCTATTCT+TGG | + | chr1.3:76457859-76457878 | MS.gene74934:CDS | 35.0% |
! | GATCACAAGAGTTTGTTCTT+GGG | - | chr1.3:76456268-76456287 | None:intergenic | 35.0% |
! | TCATTTTCATCACCCACAAT+TGG | - | chr1.3:76457358-76457377 | None:intergenic | 35.0% |
! | TGAAATCCATGTTCTGCTTT+TGG | - | chr1.3:76458030-76458049 | None:intergenic | 35.0% |
!! | CTATCAAGCTTTGAGATTCT+TGG | - | chr1.3:76457847-76457866 | None:intergenic | 35.0% |
!!! | AGGTGGTTTTGTGAAATTGA+TGG | + | chr1.3:76458332-76458351 | MS.gene74934:CDS | 35.0% |
!!! | TGGTTTTGTGAAATTGATGG+AGG | + | chr1.3:76458335-76458354 | MS.gene74934:CDS | 35.0% |
ACCTTGGTATTCTTCAGAGA+AGG | - | chr1.3:76457515-76457534 | None:intergenic | 40.0% | |
AGAGCTTCAAGATGAACTTG+AGG | + | chr1.3:76457924-76457943 | MS.gene74934:CDS | 40.0% | |
AGGTATGGAAGTGGAAAGTT+GGG | - | chr1.3:76456297-76456316 | None:intergenic | 40.0% | |
AGTGAAAGCAACCAAAATGG+TGG | + | chr1.3:76456191-76456210 | MS.gene74934:CDS | 40.0% | |
AGTGTTTGGATCCAAGCTAT+TGG | - | chr1.3:76456476-76456495 | None:intergenic | 40.0% | |
ATCTCAATGCATTGTCATGG+TGG | + | chr1.3:76457273-76457292 | MS.gene74934:CDS | 40.0% | |
ATGAATATTGCAGGCACAAG+TGG | + | chr1.3:76458251-76458270 | MS.gene74934:intron | 40.0% | |
ATTCACTACTAGAGCTGACA+CGG | + | chr1.3:76458608-76458627 | MS.gene74934:CDS | 40.0% | |
ATTGAACAGGATTCATGCAC+AGG | + | chr1.3:76456414-76456433 | MS.gene74934:intron | 40.0% | |
CAAATCTTCATGCTGGAACT+TGG | + | chr1.3:76458633-76458652 | MS.gene74934:CDS | 40.0% | |
CACATCTCAATGCATTGTCA+TGG | + | chr1.3:76457270-76457289 | MS.gene74934:CDS | 40.0% | |
CAGAATGAAGAAGAGGATGA+TGG | + | chr1.3:76457712-76457731 | MS.gene74934:CDS | 40.0% | |
CAGCAACAAGGTTCTTTGAT+TGG | - | chr1.3:76457768-76457787 | None:intergenic | 40.0% | |
CAGTGATCAGAATGAAGAAG+AGG | + | chr1.3:76457705-76457724 | MS.gene74934:CDS | 40.0% | |
CATGCAATCGAATCCAATTG+TGG | + | chr1.3:76457342-76457361 | MS.gene74934:CDS | 40.0% | |
CATGGATTTCATGTTGGGAA+TGG | + | chr1.3:76458039-76458058 | MS.gene74934:CDS | 40.0% | |
CTTGAGGAAAATTCAGACAC+AGG | + | chr1.3:76457940-76457959 | MS.gene74934:CDS | 40.0% | |
GAGAGATTAAGACCTCTTGT+TGG | + | chr1.3:76455967-76455986 | MS.gene74934:CDS | 40.0% | |
GATAGTTCAACCAATTGGGT+TGG | - | chr1.3:76456453-76456472 | None:intergenic | 40.0% | |
GATCCTGAAGAAAAGAACCT+TGG | - | chr1.3:76457531-76457550 | None:intergenic | 40.0% | |
GCAGAACATGGATTTCATGT+TGG | + | chr1.3:76458033-76458052 | MS.gene74934:CDS | 40.0% | |
GTGTTTGGATCCAAGCTATT+GGG | - | chr1.3:76456475-76456494 | None:intergenic | 40.0% | |
GTTGAACTATCCCAATAGCT+TGG | + | chr1.3:76456462-76456481 | MS.gene74934:CDS | 40.0% | |
TACATGAAGAGACAGGGAAA+AGG | - | chr1.3:76456226-76456245 | None:intergenic | 40.0% | |
TAGGTATGGAAGTGGAAAGT+TGG | - | chr1.3:76456298-76456317 | None:intergenic | 40.0% | |
TATCCCTACATGAAGAGACA+GGG | - | chr1.3:76456232-76456251 | None:intergenic | 40.0% | |
TCTCAAATCACACACAGAAG+AGG | + | chr1.3:76457567-76457586 | MS.gene74934:CDS | 40.0% | |
TGGGAATGAGTACTTTGTGA+AGG | + | chr1.3:76458290-76458309 | MS.gene74934:CDS | 40.0% | |
TTCTTGGAACCAATGAACGA+AGG | - | chr1.3:76457831-76457850 | None:intergenic | 40.0% | |
TTTCCCTGTCTCTTCATGTA+GGG | + | chr1.3:76456226-76456245 | MS.gene74934:CDS | 40.0% | |
! | ACCTTCTCTGAAGAATACCA+AGG | + | chr1.3:76457511-76457530 | MS.gene74934:CDS | 40.0% |
! | TTTTCCCTGTCTCTTCATGT+AGG | + | chr1.3:76456225-76456244 | MS.gene74934:CDS | 40.0% |
!! | AGACCTCTTGTTGGTTTGAA+TGG | + | chr1.3:76455976-76455995 | MS.gene74934:CDS | 40.0% |
!! | AGGCACTGGAATCAAAACAT+GGG | - | chr1.3:76456633-76456652 | None:intergenic | 40.0% |
!! | ATGGAGGCTTTGAACACTTT+AGG | + | chr1.3:76458351-76458370 | MS.gene74934:CDS | 40.0% |
!! | ATTGTCATGGTGGATCAAGA+AGG | + | chr1.3:76457283-76457302 | MS.gene74934:CDS | 40.0% |
!! | TCTTGTTGGTTTGAATGGCT+GGG | + | chr1.3:76455981-76456000 | MS.gene74934:CDS | 40.0% |
!! | TTGTCATGGTGGATCAAGAA+GGG | + | chr1.3:76457284-76457303 | MS.gene74934:CDS | 40.0% |
CAAAGAACCTTGTTGCTGAG+AGG | + | chr1.3:76457770-76457789 | MS.gene74934:CDS | 45.0% | |
CACGGAACAAATCTTCATGC+TGG | + | chr1.3:76458626-76458645 | MS.gene74934:CDS | 45.0% | |
CAGCCATTCAAACCAACAAG+AGG | - | chr1.3:76455982-76456001 | None:intergenic | 45.0% | |
GAAGGGATGAACCACTCAAT+TGG | + | chr1.3:76457301-76457320 | MS.gene74934:CDS | 45.0% | |
GAATGGTTGGGATGTTGTTG+TGG | + | chr1.3:76456164-76456183 | MS.gene74934:CDS | 45.0% | |
GGGAGTGAAAGCAACCAAAA+TGG | + | chr1.3:76456188-76456207 | MS.gene74934:CDS | 45.0% | |
GTATCCCTACATGAAGAGAC+AGG | - | chr1.3:76456233-76456252 | None:intergenic | 45.0% | |
TGGAAGTGGCTCAGATAGAT+GGG | + | chr1.3:76458271-76458290 | MS.gene74934:CDS | 45.0% | |
TTCTCTTCCTCTCAGCAACA+AGG | - | chr1.3:76457780-76457799 | None:intergenic | 45.0% | |
TTGTTGCTGAGAGGAAGAGA+AGG | + | chr1.3:76457779-76457798 | MS.gene74934:CDS | 45.0% | |
! | GGTGTTCTTCTCCACCATTT+TGG | - | chr1.3:76456205-76456224 | None:intergenic | 45.0% |
!! | CAGGCACTGGAATCAAAACA+TGG | - | chr1.3:76456634-76456653 | None:intergenic | 45.0% |
!! | CTCTTGTTGGTTTGAATGGC+TGG | + | chr1.3:76455980-76455999 | MS.gene74934:CDS | 45.0% |
!! | GGCTTTGAACACTTTAGGCA+TGG | + | chr1.3:76458356-76458375 | MS.gene74934:CDS | 45.0% |
!!! | CATGTTTTGATTCCAGTGCC+TGG | + | chr1.3:76456632-76456651 | MS.gene74934:CDS | 45.0% |
!!! | TGAAGGTGTTTTGTGAGCAC+AGG | + | chr1.3:76458307-76458326 | MS.gene74934:CDS | 45.0% |
ATTGCAGGCACAAGTGGAAG+TGG | + | chr1.3:76458257-76458276 | MS.gene74934:intron | 50.0% | |
GCCACAGTAACCAGTCACAA+GGG | + | chr1.3:76458390-76458409 | MS.gene74934:CDS | 50.0% | |
GCTGGGATTACTGTGTCTAC+TGG | + | chr1.3:76455998-76456017 | MS.gene74934:CDS | 50.0% | |
GGTTGGGATGTTGTTGTGGT+GGG | + | chr1.3:76456168-76456187 | MS.gene74934:CDS | 50.0% | |
GTGGAAGTGGCTCAGATAGA+TGG | + | chr1.3:76458270-76458289 | MS.gene74934:CDS | 50.0% | |
TGACAAGCAGACACAGCAGA+TGG | + | chr1.3:76458104-76458123 | MS.gene74934:CDS | 50.0% | |
TGAGACAAGACCCTTGTGAC+TGG | - | chr1.3:76458403-76458422 | None:intergenic | 50.0% | |
TGCCACAGTAACCAGTCACA+AGG | + | chr1.3:76458389-76458408 | MS.gene74934:CDS | 50.0% | |
TGGTTGGGATGTTGTTGTGG+TGG | + | chr1.3:76456167-76456186 | MS.gene74934:CDS | 50.0% | |
! | ACCCTTGTGACTGGTTACTG+TGG | - | chr1.3:76458394-76458413 | None:intergenic | 50.0% |
!!! | GTTTTGATTCCAGTGCCTGG+TGG | + | chr1.3:76456635-76456654 | MS.gene74934:CDS | 50.0% |
AAGAGCTCAACCAGTCCACC+AGG | - | chr1.3:76456653-76456672 | None:intergenic | 55.0% | |
CAAGCAGACACAGCAGATGG+AGG | + | chr1.3:76458107-76458126 | MS.gene74934:CDS | 55.0% | |
! | GTGTTTTGTGAGCACAGGCC+AGG | + | chr1.3:76458312-76458331 | MS.gene74934:CDS | 55.0% |
! | TTTTGTGAGCACAGGCCAGG+TGG | + | chr1.3:76458315-76458334 | MS.gene74934:CDS | 55.0% |
TCAACCAGTCCACCAGGCAC+TGG | - | chr1.3:76456647-76456666 | None:intergenic | 60.0% | |
! | GATTCCAGTGCCTGGTGGAC+TGG | + | chr1.3:76456640-76456659 | MS.gene74934:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 76455937 | 76458663 | 76455937 | ID=MS.gene74934 |
chr1.3 | mRNA | 76455937 | 76458663 | 76455937 | ID=MS.gene74934.t1;Parent=MS.gene74934 |
chr1.3 | exon | 76455937 | 76456040 | 76455937 | ID=MS.gene74934.t1.exon1;Parent=MS.gene74934.t1 |
chr1.3 | CDS | 76455937 | 76456040 | 76455937 | ID=cds.MS.gene74934.t1;Parent=MS.gene74934.t1 |
chr1.3 | exon | 76456157 | 76456327 | 76456157 | ID=MS.gene74934.t1.exon2;Parent=MS.gene74934.t1 |
chr1.3 | CDS | 76456157 | 76456327 | 76456157 | ID=cds.MS.gene74934.t1;Parent=MS.gene74934.t1 |
chr1.3 | exon | 76456423 | 76456501 | 76456423 | ID=MS.gene74934.t1.exon3;Parent=MS.gene74934.t1 |
chr1.3 | CDS | 76456423 | 76456501 | 76456423 | ID=cds.MS.gene74934.t1;Parent=MS.gene74934.t1 |
chr1.3 | exon | 76456614 | 76456685 | 76456614 | ID=MS.gene74934.t1.exon4;Parent=MS.gene74934.t1 |
chr1.3 | CDS | 76456614 | 76456685 | 76456614 | ID=cds.MS.gene74934.t1;Parent=MS.gene74934.t1 |
chr1.3 | exon | 76457238 | 76458128 | 76457238 | ID=MS.gene74934.t1.exon5;Parent=MS.gene74934.t1 |
chr1.3 | CDS | 76457238 | 76458128 | 76457238 | ID=cds.MS.gene74934.t1;Parent=MS.gene74934.t1 |
chr1.3 | exon | 76458264 | 76458440 | 76458264 | ID=MS.gene74934.t1.exon6;Parent=MS.gene74934.t1 |
chr1.3 | CDS | 76458264 | 76458440 | 76458264 | ID=cds.MS.gene74934.t1;Parent=MS.gene74934.t1 |
chr1.3 | exon | 76458556 | 76458663 | 76458556 | ID=MS.gene74934.t1.exon7;Parent=MS.gene74934.t1 |
chr1.3 | CDS | 76458556 | 76458663 | 76458556 | ID=cds.MS.gene74934.t1;Parent=MS.gene74934.t1 |
Gene Sequence |
Protein sequence |