Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74937.t1 | XP_013470325.1 | 87.3 | 324 | 27 | 5 | 1 | 318 | 1 | 316 | 9.10E-145 | 523.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74937.t1 | Q8VZ20 | 41.7 | 319 | 152 | 7 | 16 | 318 | 14 | 314 | 1.1e-53 | 211.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74937.t1 | A0A072VSJ7 | 87.3 | 324 | 27 | 5 | 1 | 318 | 1 | 316 | 6.6e-145 | 523.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene74937.t1 | TF | Trihelix |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74937.t1 | MTR_1g112650 | 87.346 | 324 | 27 | 5 | 1 | 318 | 1 | 316 | 0.0 | 509 |
MS.gene74937.t1 | MTR_7g020870 | 70.029 | 347 | 69 | 7 | 1 | 318 | 1 | 341 | 1.37e-150 | 426 |
MS.gene74937.t1 | MTR_7g020870 | 68.000 | 250 | 53 | 5 | 1 | 229 | 1 | 244 | 1.05e-100 | 296 |
MS.gene74937.t1 | MTR_8g100130 | 35.542 | 332 | 161 | 9 | 32 | 318 | 38 | 361 | 1.90e-49 | 169 |
MS.gene74937.t1 | MTR_1g094045 | 29.605 | 152 | 67 | 5 | 43 | 154 | 56 | 207 | 2.79e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74937.t1 | AT2G33550 | 45.399 | 326 | 130 | 11 | 16 | 318 | 14 | 314 | 2.10e-75 | 234 |
MS.gene74937.t1 | AT4G31270 | 31.250 | 112 | 71 | 2 | 43 | 154 | 19 | 124 | 3.24e-13 | 69.3 |
MS.gene74937.t1 | AT2G35640 | 32.824 | 131 | 71 | 5 | 43 | 160 | 22 | 148 | 1.30e-11 | 65.1 |
Find 92 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATTCCGTCATCGGAATT+AGG | 0.129660 | 1.3:-76411880 | None:intergenic |
CCAACTGTAATCTCTTGTTC+TGG | 0.278506 | 1.3:-76412689 | None:intergenic |
TTGCTGTTTGATTCTGTTGC+TGG | 0.281641 | 1.3:-76412716 | None:intergenic |
CAATTCCGTCATCGGAATTA+GGG | 0.284671 | 1.3:-76411879 | None:intergenic |
TTCATATTTATGATAGTAAT+AGG | 0.301580 | 1.3:+76412373 | MS.gene74937:CDS |
GTGGACTAGGCAGGAGATTC+TGG | 0.308965 | 1.3:+76411972 | MS.gene74937:CDS |
TCCGATGACGGAATTGATAA+TGG | 0.339364 | 1.3:+76411886 | MS.gene74937:CDS |
TCTTTCTCCTTCTAGATTTG+AGG | 0.339729 | 1.3:-76412556 | None:intergenic |
GGTCGAAACGGTTCCTTGTT+TGG | 0.351084 | 1.3:+76412039 | MS.gene74937:CDS |
GGTGGCTGCAACGGCTGTTC+CGG | 0.353509 | 1.3:+76412305 | MS.gene74937:CDS |
CGCAGATTACAAGAAGATTA+AGG | 0.365457 | 1.3:+76412161 | MS.gene74937:CDS |
GATTAAGGAGTGGGAGTCTC+AGG | 0.378865 | 1.3:+76412176 | MS.gene74937:CDS |
GAATCAAACAGCAAGTAATA+TGG | 0.381577 | 1.3:+76412725 | MS.gene74937:CDS |
CACATCTTCGCCATCATTCA+CGG | 0.396485 | 1.3:-76411926 | None:intergenic |
GATAAGCTTGCAAATGCTCT+TGG | 0.406542 | 1.3:+76412759 | MS.gene74937:CDS |
CAACTGTAATCTCTTGTTCT+GGG | 0.411973 | 1.3:-76412688 | None:intergenic |
CTCGAGCATTGCCTTCTCCT+TGG | 0.418681 | 1.3:-76412509 | None:intergenic |
CGTTTCGACCTGGTTTCAAC+CGG | 0.422688 | 1.3:-76412026 | None:intergenic |
TGCTTCTCTGAGACTGAGAT+TGG | 0.427099 | 1.3:-76412462 | None:intergenic |
GTGATGAAAGGGAGTCGTTT+TGG | 0.430091 | 1.3:+76412202 | MS.gene74937:CDS |
CAACAAGCCTCAAATCTAGA+AGG | 0.443939 | 1.3:+76412549 | MS.gene74937:CDS |
TTCTCCTTGGAAGCCACTGA+GGG | 0.458309 | 1.3:-76412496 | None:intergenic |
CGATTCAGTGTAAGAAGCGA+TGG | 0.458477 | 1.3:+76412127 | MS.gene74937:CDS |
TCTGAGACTGAGATTGGAAC+AGG | 0.459059 | 1.3:-76412456 | None:intergenic |
ATAAGCTTGCAAATGCTCTT+GGG | 0.460039 | 1.3:+76412760 | MS.gene74937:CDS |
TCCATTATCAATTCCGTCAT+CGG | 0.473675 | 1.3:-76411887 | None:intergenic |
TCTTACACTGAATCGGTGTC+CGG | 0.476690 | 1.3:-76412119 | None:intergenic |
CATCGCTTCTTACACTGAAT+CGG | 0.477582 | 1.3:-76412126 | None:intergenic |
AACGGCTGTTCCGGTGGCTG+TGG | 0.485143 | 1.3:+76412314 | MS.gene74937:CDS |
CCACCCCTCAGTGGCTTCCA+AGG | 0.495290 | 1.3:+76412492 | MS.gene74937:CDS |
CCGTCATCCGCCGTGAATGA+TGG | 0.495613 | 1.3:+76411916 | MS.gene74937:CDS |
GGCGAAGATGTGAAACCAAC+GGG | 0.499148 | 1.3:+76411937 | MS.gene74937:CDS |
GAGATTCTGGTGCTAGTACA+TGG | 0.500266 | 1.3:+76411985 | MS.gene74937:CDS |
CTTCTCCTTGGAAGCCACTG+AGG | 0.501288 | 1.3:-76412497 | None:intergenic |
TTCAGAGGTGGTTGGTGATG+AGG | 0.515224 | 1.3:+76412347 | MS.gene74937:CDS |
CTTCTCAAACGAACCAAACA+AGG | 0.517996 | 1.3:-76412052 | None:intergenic |
GTCTCAGGTGAGTGATGAAA+GGG | 0.520228 | 1.3:+76412191 | MS.gene74937:CDS |
GGCTGCAACGGCTGTTCCGG+TGG | 0.520416 | 1.3:+76412308 | MS.gene74937:CDS |
GGTTAGAACGTAACGAGGGT+TGG | 0.525104 | 1.3:-76411858 | None:intergenic |
CACCGTTGTAACCTTCCCGT+TGG | 0.525108 | 1.3:-76411952 | None:intergenic |
AGCGGTGCAGCCACAGCCAC+CGG | 0.528007 | 1.3:-76412324 | None:intergenic |
ACGTTGAGTTGAGGAGAGAG+AGG | 0.528535 | 1.3:+76412232 | MS.gene74937:CDS |
GTGAGAAACATGGTGTGAAC+CGG | 0.529962 | 1.3:+76412100 | MS.gene74937:CDS |
GAAGGTTACAACGGTGGACT+AGG | 0.530482 | 1.3:+76411959 | MS.gene74937:CDS |
CCATCATTCACGGCGGATGA+CGG | 0.532480 | 1.3:-76411916 | None:intergenic |
GTTACAACGGTGGACTAGGC+AGG | 0.534691 | 1.3:+76411963 | MS.gene74937:CDS |
AGAGGTGGTTGGTGATGAGG+AGG | 0.536029 | 1.3:+76412350 | MS.gene74937:CDS |
AGGAGAGAGAGGAAATTGCC+TGG | 0.537062 | 1.3:+76412243 | MS.gene74937:CDS |
CTCAGTGGCTTCCAAGGAGA+AGG | 0.537608 | 1.3:+76412498 | MS.gene74937:CDS |
GCACCGCTTTCAGAGGTGGT+TGG | 0.540651 | 1.3:+76412339 | MS.gene74937:CDS |
GGCTGCACCGCTTTCAGAGG+TGG | 0.542650 | 1.3:+76412335 | MS.gene74937:CDS |
TGATTCAGCGGTGGCTGCAA+CGG | 0.542719 | 1.3:+76412296 | MS.gene74937:CDS |
AAGGAGAAAGAAAGAGGAAG+CGG | 0.544131 | 1.3:+76412568 | MS.gene74937:CDS |
ATCTAGAAGGAGAAAGAAAG+AGG | 0.547355 | 1.3:+76412562 | MS.gene74937:CDS |
TTGGTTCGTTTGAGAAGAAG+TGG | 0.552340 | 1.3:+76412058 | MS.gene74937:CDS |
AGTCTCAGGTGAGTGATGAA+AGG | 0.552467 | 1.3:+76412190 | MS.gene74937:CDS |
CGGTTGAAACCAGGTCGAAA+CGG | 0.555133 | 1.3:+76412027 | MS.gene74937:CDS |
GAAAGAACGATGCTGAAAGC+CGG | 0.556340 | 1.3:+76412007 | MS.gene74937:CDS |
AACAAGGAACCGTTTCGACC+TGG | 0.557484 | 1.3:-76412036 | None:intergenic |
TTACAAGAAGATTAAGGAGT+GGG | 0.557499 | 1.3:+76412167 | MS.gene74937:CDS |
TGTGGCTGCACCGCTTTCAG+AGG | 0.562492 | 1.3:+76412332 | MS.gene74937:CDS |
AGGAAGCGGTTTGCAACAGA+AGG | 0.571454 | 1.3:+76412582 | MS.gene74937:CDS |
GCTGAAAGCCGGTTGAAACC+AGG | 0.575628 | 1.3:+76412018 | MS.gene74937:CDS |
GATTCAGTGTAAGAAGCGAT+GGG | 0.580190 | 1.3:+76412128 | MS.gene74937:CDS |
CCTTGGAAGCCACTGAGGGG+TGG | 0.581125 | 1.3:-76412492 | None:intergenic |
CTTAATCTTCTTGTAATCTG+CGG | 0.598671 | 1.3:-76412160 | None:intergenic |
TTATAATATTCTTGATTCAG+CGG | 0.602422 | 1.3:+76412284 | MS.gene74937:CDS |
TCACCAACCACCTCTGAAAG+CGG | 0.602431 | 1.3:-76412342 | None:intergenic |
CCAGAACAAGAGATTACAGT+TGG | 0.612831 | 1.3:+76412689 | MS.gene74937:CDS |
GATGCTATGTGAACAGCTAG+AGG | 0.617201 | 1.3:+76412665 | MS.gene74937:CDS |
TCTTCGTACTGTGAGAAACA+TGG | 0.622882 | 1.3:+76412090 | MS.gene74937:CDS |
AACAGAAGGCAATGAAGAGG+AGG | 0.623007 | 1.3:+76412596 | MS.gene74937:CDS |
TGGCGAAGATGTGAAACCAA+CGG | 0.623950 | 1.3:+76411936 | MS.gene74937:CDS |
CAGTGTGTTCCACCCCTCAG+TGG | 0.628265 | 1.3:+76412483 | MS.gene74937:CDS |
TCTAACCCTAATTCCGATGA+CGG | 0.628696 | 1.3:+76411874 | MS.gene74937:CDS |
GTTTGAGAAGAAGTGGACGT+TGG | 0.629824 | 1.3:+76412065 | MS.gene74937:CDS |
TAATATTCTTGATTCAGCGG+TGG | 0.634646 | 1.3:+76412287 | MS.gene74937:CDS |
TGCAACAGAAGGCAATGAAG+AGG | 0.638315 | 1.3:+76412593 | MS.gene74937:CDS |
ATTACAAGAAGATTAAGGAG+TGG | 0.640078 | 1.3:+76412166 | MS.gene74937:CDS |
CAAGGAGAAGGCAATGCTCG+AGG | 0.643488 | 1.3:+76412510 | MS.gene74937:CDS |
TCTCCTTGGAAGCCACTGAG+GGG | 0.652532 | 1.3:-76412495 | None:intergenic |
TCATTCACGGCGGATGACGG+TGG | 0.658142 | 1.3:-76411913 | None:intergenic |
GGTTGATGAACGTTGAGTTG+AGG | 0.661503 | 1.3:+76412223 | MS.gene74937:CDS |
ACCTCCCAATCAAAACAACC+AGG | 0.662249 | 1.3:-76412261 | None:intergenic |
ATTAGGGTTAGAACGTAACG+AGG | 0.673798 | 1.3:-76411863 | None:intergenic |
AAGATGTGAAACCAACGGGA+AGG | 0.680756 | 1.3:+76411941 | MS.gene74937:CDS |
CAACGGGAAGGTTACAACGG+TGG | 0.688026 | 1.3:+76411953 | MS.gene74937:CDS |
GATAGTAATAGGAAAGTGAG+CGG | 0.698735 | 1.3:+76412384 | MS.gene74937:CDS |
AACCAACGGGAAGGTTACAA+CGG | 0.725397 | 1.3:+76411950 | MS.gene74937:CDS |
ATTCAGTGTAAGAAGCGATG+GGG | 0.726554 | 1.3:+76412129 | MS.gene74937:CDS |
TTAGGGTTAGAACGTAACGA+GGG | 0.750121 | 1.3:-76411862 | None:intergenic |
ATCTTCGCCATCATTCACGG+CGG | 0.776820 | 1.3:-76411923 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCATATTTATGATAGTAAT+AGG | + | chr1.3:76412373-76412392 | MS.gene74937:CDS | 15.0% |
!! | TTATAATATTCTTGATTCAG+CGG | + | chr1.3:76412284-76412303 | MS.gene74937:CDS | 20.0% |
!! | ATTGAAGTGTTAGAGAAAAA+TGG | + | chr1.3:76412639-76412658 | MS.gene74937:CDS | 25.0% |
ATTACAAGAAGATTAAGGAG+TGG | + | chr1.3:76412166-76412185 | MS.gene74937:CDS | 30.0% | |
CTTAATCTTCTTGTAATCTG+CGG | - | chr1.3:76412163-76412182 | None:intergenic | 30.0% | |
GAATCAAACAGCAAGTAATA+TGG | + | chr1.3:76412725-76412744 | MS.gene74937:CDS | 30.0% | |
TTACAAGAAGATTAAGGAGT+GGG | + | chr1.3:76412167-76412186 | MS.gene74937:CDS | 30.0% | |
!! | AGATGAGTTGTTTTCTGATA+CGG | + | chr1.3:76412410-76412429 | MS.gene74937:CDS | 30.0% |
ATAAGCTTGCAAATGCTCTT+GGG | + | chr1.3:76412760-76412779 | MS.gene74937:CDS | 35.0% | |
ATCTAGAAGGAGAAAGAAAG+AGG | + | chr1.3:76412562-76412581 | MS.gene74937:CDS | 35.0% | |
CAACTGTAATCTCTTGTTCT+GGG | - | chr1.3:76412691-76412710 | None:intergenic | 35.0% | |
CGCAGATTACAAGAAGATTA+AGG | + | chr1.3:76412161-76412180 | MS.gene74937:CDS | 35.0% | |
GATAGTAATAGGAAAGTGAG+CGG | + | chr1.3:76412384-76412403 | MS.gene74937:CDS | 35.0% | |
TAATATTCTTGATTCAGCGG+TGG | + | chr1.3:76412287-76412306 | MS.gene74937:CDS | 35.0% | |
TCCATTATCAATTCCGTCAT+CGG | - | chr1.3:76411890-76411909 | None:intergenic | 35.0% | |
TCTTTCTCCTTCTAGATTTG+AGG | - | chr1.3:76412559-76412578 | None:intergenic | 35.0% | |
!!! | AATTGCCTGGTTGTTTTGAT+TGG | + | chr1.3:76412256-76412275 | MS.gene74937:CDS | 35.0% |
!!! | ATTGCCTGGTTGTTTTGATT+GGG | + | chr1.3:76412257-76412276 | MS.gene74937:CDS | 35.0% |
AAGGAGAAAGAAAGAGGAAG+CGG | + | chr1.3:76412568-76412587 | MS.gene74937:CDS | 40.0% | |
ATTAGGGTTAGAACGTAACG+AGG | - | chr1.3:76411866-76411885 | None:intergenic | 40.0% | |
ATTCAGTGTAAGAAGCGATG+GGG | + | chr1.3:76412129-76412148 | MS.gene74937:CDS | 40.0% | |
CAACAAGCCTCAAATCTAGA+AGG | + | chr1.3:76412549-76412568 | MS.gene74937:CDS | 40.0% | |
CAATTCCGTCATCGGAATTA+GGG | - | chr1.3:76411882-76411901 | None:intergenic | 40.0% | |
CATCGCTTCTTACACTGAAT+CGG | - | chr1.3:76412129-76412148 | None:intergenic | 40.0% | |
CCAACTGTAATCTCTTGTTC+TGG | - | chr1.3:76412692-76412711 | None:intergenic | 40.0% | |
CCAGAACAAGAGATTACAGT+TGG | + | chr1.3:76412689-76412708 | MS.gene74937:CDS | 40.0% | |
CTTCTCAAACGAACCAAACA+AGG | - | chr1.3:76412055-76412074 | None:intergenic | 40.0% | |
GATAAGCTTGCAAATGCTCT+TGG | + | chr1.3:76412759-76412778 | MS.gene74937:CDS | 40.0% | |
GATTCAGTGTAAGAAGCGAT+GGG | + | chr1.3:76412128-76412147 | MS.gene74937:CDS | 40.0% | |
TCAATTCCGTCATCGGAATT+AGG | - | chr1.3:76411883-76411902 | None:intergenic | 40.0% | |
TCTAACCCTAATTCCGATGA+CGG | + | chr1.3:76411874-76411893 | MS.gene74937:CDS | 40.0% | |
TCTTCGTACTGTGAGAAACA+TGG | + | chr1.3:76412090-76412109 | MS.gene74937:CDS | 40.0% | |
TTAGGGTTAGAACGTAACGA+GGG | - | chr1.3:76411865-76411884 | None:intergenic | 40.0% | |
! | TTGGTTCGTTTGAGAAGAAG+TGG | + | chr1.3:76412058-76412077 | MS.gene74937:CDS | 40.0% |
!! | GTTGTTTTCTGATACGGAGA+AGG | + | chr1.3:76412416-76412435 | MS.gene74937:CDS | 40.0% |
!! | TCCGATGACGGAATTGATAA+TGG | + | chr1.3:76411886-76411905 | MS.gene74937:CDS | 40.0% |
!! | TTGCTGTTTGATTCTGTTGC+TGG | - | chr1.3:76412719-76412738 | None:intergenic | 40.0% |
AACAGAAGGCAATGAAGAGG+AGG | + | chr1.3:76412596-76412615 | MS.gene74937:CDS | 45.0% | |
AACCAACGGGAAGGTTACAA+CGG | + | chr1.3:76411950-76411969 | MS.gene74937:CDS | 45.0% | |
AAGATGTGAAACCAACGGGA+AGG | + | chr1.3:76411941-76411960 | MS.gene74937:CDS | 45.0% | |
ACCTCCCAATCAAAACAACC+AGG | - | chr1.3:76412264-76412283 | None:intergenic | 45.0% | |
AGTCTCAGGTGAGTGATGAA+AGG | + | chr1.3:76412190-76412209 | MS.gene74937:CDS | 45.0% | |
CACATCTTCGCCATCATTCA+CGG | - | chr1.3:76411929-76411948 | None:intergenic | 45.0% | |
CGATTCAGTGTAAGAAGCGA+TGG | + | chr1.3:76412127-76412146 | MS.gene74937:CDS | 45.0% | |
GAAAGAACGATGCTGAAAGC+CGG | + | chr1.3:76412007-76412026 | MS.gene74937:CDS | 45.0% | |
GATGCTATGTGAACAGCTAG+AGG | + | chr1.3:76412665-76412684 | MS.gene74937:CDS | 45.0% | |
GTCTCAGGTGAGTGATGAAA+GGG | + | chr1.3:76412191-76412210 | MS.gene74937:CDS | 45.0% | |
GTGAGAAACATGGTGTGAAC+CGG | + | chr1.3:76412100-76412119 | MS.gene74937:CDS | 45.0% | |
GTTTGAGAAGAAGTGGACGT+TGG | + | chr1.3:76412065-76412084 | MS.gene74937:CDS | 45.0% | |
TGCAACAGAAGGCAATGAAG+AGG | + | chr1.3:76412593-76412612 | MS.gene74937:CDS | 45.0% | |
TGGCGAAGATGTGAAACCAA+CGG | + | chr1.3:76411936-76411955 | MS.gene74937:CDS | 45.0% | |
! | GAGATTCTGGTGCTAGTACA+TGG | + | chr1.3:76411985-76412004 | MS.gene74937:CDS | 45.0% |
! | GTGATGAAAGGGAGTCGTTT+TGG | + | chr1.3:76412202-76412221 | MS.gene74937:CDS | 45.0% |
! | TCTGAGACTGAGATTGGAAC+AGG | - | chr1.3:76412459-76412478 | None:intergenic | 45.0% |
! | TCTTACACTGAATCGGTGTC+CGG | - | chr1.3:76412122-76412141 | None:intergenic | 45.0% |
!! | GGTTGATGAACGTTGAGTTG+AGG | + | chr1.3:76412223-76412242 | MS.gene74937:CDS | 45.0% |
!! | TGCTTCTCTGAGACTGAGAT+TGG | - | chr1.3:76412465-76412484 | None:intergenic | 45.0% |
AACAAGGAACCGTTTCGACC+TGG | - | chr1.3:76412039-76412058 | None:intergenic | 50.0% | |
AGGAAGCGGTTTGCAACAGA+AGG | + | chr1.3:76412582-76412601 | MS.gene74937:CDS | 50.0% | |
AGGAGAGAGAGGAAATTGCC+TGG | + | chr1.3:76412243-76412262 | MS.gene74937:CDS | 50.0% | |
ATCTTCGCCATCATTCACGG+CGG | - | chr1.3:76411926-76411945 | None:intergenic | 50.0% | |
CGGTTGAAACCAGGTCGAAA+CGG | + | chr1.3:76412027-76412046 | MS.gene74937:CDS | 50.0% | |
CGTTTCGACCTGGTTTCAAC+CGG | - | chr1.3:76412029-76412048 | None:intergenic | 50.0% | |
GATTAAGGAGTGGGAGTCTC+AGG | + | chr1.3:76412176-76412195 | MS.gene74937:CDS | 50.0% | |
GGCGAAGATGTGAAACCAAC+GGG | + | chr1.3:76411937-76411956 | MS.gene74937:CDS | 50.0% | |
GGTCGAAACGGTTCCTTGTT+TGG | + | chr1.3:76412039-76412058 | MS.gene74937:CDS | 50.0% | |
GGTTAGAACGTAACGAGGGT+TGG | - | chr1.3:76411861-76411880 | None:intergenic | 50.0% | |
TTCTCCTTGGAAGCCACTGA+GGG | - | chr1.3:76412499-76412518 | None:intergenic | 50.0% | |
! | GAAGGTTACAACGGTGGACT+AGG | + | chr1.3:76411959-76411978 | MS.gene74937:CDS | 50.0% |
! | TCACCAACCACCTCTGAAAG+CGG | - | chr1.3:76412345-76412364 | None:intergenic | 50.0% |
!! | ACGTTGAGTTGAGGAGAGAG+AGG | + | chr1.3:76412232-76412251 | MS.gene74937:CDS | 50.0% |
!! | TTCAGAGGTGGTTGGTGATG+AGG | + | chr1.3:76412347-76412366 | MS.gene74937:CDS | 50.0% |
!!! | GCCTGGTTGTTTTGATTGGG+AGG | + | chr1.3:76412260-76412279 | MS.gene74937:CDS | 50.0% |
CAACGGGAAGGTTACAACGG+TGG | + | chr1.3:76411953-76411972 | MS.gene74937:CDS | 55.0% | |
CAAGGAGAAGGCAATGCTCG+AGG | + | chr1.3:76412510-76412529 | MS.gene74937:CDS | 55.0% | |
CACCGTTGTAACCTTCCCGT+TGG | - | chr1.3:76411955-76411974 | None:intergenic | 55.0% | |
CCATCATTCACGGCGGATGA+CGG | - | chr1.3:76411919-76411938 | None:intergenic | 55.0% | |
CTCAGTGGCTTCCAAGGAGA+AGG | + | chr1.3:76412498-76412517 | MS.gene74937:CDS | 55.0% | |
CTTCTCCTTGGAAGCCACTG+AGG | - | chr1.3:76412500-76412519 | None:intergenic | 55.0% | |
GCTGAAAGCCGGTTGAAACC+AGG | + | chr1.3:76412018-76412037 | MS.gene74937:CDS | 55.0% | |
TCTCCTTGGAAGCCACTGAG+GGG | - | chr1.3:76412498-76412517 | None:intergenic | 55.0% | |
TGATTCAGCGGTGGCTGCAA+CGG | + | chr1.3:76412296-76412315 | MS.gene74937:CDS | 55.0% | |
! | CTCGAGCATTGCCTTCTCCT+TGG | - | chr1.3:76412512-76412531 | None:intergenic | 55.0% |
!! | AGAGGTGGTTGGTGATGAGG+AGG | + | chr1.3:76412350-76412369 | MS.gene74937:CDS | 55.0% |
!! | GTGGACTAGGCAGGAGATTC+TGG | + | chr1.3:76411972-76411991 | MS.gene74937:CDS | 55.0% |
!! | GTTACAACGGTGGACTAGGC+AGG | + | chr1.3:76411963-76411982 | MS.gene74937:CDS | 55.0% |
CAGTGTGTTCCACCCCTCAG+TGG | + | chr1.3:76412483-76412502 | MS.gene74937:CDS | 60.0% | |
CCGTCATCCGCCGTGAATGA+TGG | + | chr1.3:76411916-76411935 | MS.gene74937:CDS | 60.0% | |
GCACCGCTTTCAGAGGTGGT+TGG | + | chr1.3:76412339-76412358 | MS.gene74937:CDS | 60.0% | |
TGTGGCTGCACCGCTTTCAG+AGG | + | chr1.3:76412332-76412351 | MS.gene74937:CDS | 60.0% | |
! | TCATTCACGGCGGATGACGG+TGG | - | chr1.3:76411916-76411935 | None:intergenic | 60.0% |
AACGGCTGTTCCGGTGGCTG+TGG | + | chr1.3:76412314-76412333 | MS.gene74937:CDS | 65.0% | |
CCACCCCTCAGTGGCTTCCA+AGG | + | chr1.3:76412492-76412511 | MS.gene74937:CDS | 65.0% | |
CCTTGGAAGCCACTGAGGGG+TGG | - | chr1.3:76412495-76412514 | None:intergenic | 65.0% | |
GGCTGCACCGCTTTCAGAGG+TGG | + | chr1.3:76412335-76412354 | MS.gene74937:CDS | 65.0% | |
GGTGGCTGCAACGGCTGTTC+CGG | + | chr1.3:76412305-76412324 | MS.gene74937:CDS | 65.0% | |
AGCGGTGCAGCCACAGCCAC+CGG | - | chr1.3:76412327-76412346 | None:intergenic | 70.0% | |
GGCTGCAACGGCTGTTCCGG+TGG | + | chr1.3:76412308-76412327 | MS.gene74937:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 76411847 | 76412803 | 76411847 | ID=MS.gene74937 |
chr1.3 | mRNA | 76411847 | 76412803 | 76411847 | ID=MS.gene74937.t1;Parent=MS.gene74937 |
chr1.3 | exon | 76411847 | 76412803 | 76411847 | ID=MS.gene74937.t1.exon1;Parent=MS.gene74937.t1 |
chr1.3 | CDS | 76411847 | 76412803 | 76411847 | ID=cds.MS.gene74937.t1;Parent=MS.gene74937.t1 |
Gene Sequence |
Protein sequence |