Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75017.t1 | AES62834.2 | 93.2 | 191 | 13 | 0 | 1 | 191 | 29 | 219 | 1.20E-95 | 359.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75017.t1 | Q8L3W1 | 28.5 | 214 | 120 | 6 | 3 | 183 | 40 | 253 | 4.0e-10 | 66.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75017.t1 | G7IAW3 | 93.2 | 191 | 13 | 0 | 1 | 191 | 29 | 219 | 8.9e-96 | 359.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene75017.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75017.t1 | MTR_1g108780 | 93.194 | 191 | 13 | 0 | 1 | 191 | 29 | 219 | 6.32e-130 | 374 |
MS.gene75017.t1 | MTR_8g103940 | 72.727 | 187 | 50 | 1 | 1 | 187 | 71 | 256 | 1.29e-95 | 288 |
MS.gene75017.t1 | MTR_1g035460 | 52.174 | 207 | 82 | 6 | 1 | 193 | 18 | 221 | 6.97e-56 | 183 |
MS.gene75017.t1 | MTR_7g050590 | 34.653 | 202 | 111 | 7 | 1 | 197 | 18 | 203 | 3.42e-30 | 113 |
MS.gene75017.t1 | MTR_7g050720 | 33.495 | 206 | 114 | 7 | 1 | 196 | 42 | 234 | 1.30e-28 | 110 |
MS.gene75017.t1 | MTR_3g061370 | 33.333 | 186 | 86 | 3 | 1 | 178 | 39 | 194 | 8.36e-27 | 104 |
MS.gene75017.t1 | MTR_3g098790 | 31.959 | 194 | 114 | 3 | 3 | 196 | 47 | 222 | 2.84e-26 | 103 |
MS.gene75017.t1 | MTR_7g050710 | 34.574 | 188 | 101 | 6 | 1 | 183 | 45 | 215 | 5.80e-26 | 103 |
MS.gene75017.t1 | MTR_3g061330 | 32.432 | 185 | 88 | 3 | 1 | 178 | 42 | 196 | 7.31e-26 | 101 |
MS.gene75017.t1 | MTR_7g050560 | 30.392 | 204 | 102 | 6 | 1 | 197 | 45 | 215 | 1.31e-24 | 99.4 |
MS.gene75017.t1 | MTR_3g061290 | 38.793 | 116 | 64 | 1 | 1 | 109 | 42 | 157 | 4.07e-24 | 95.5 |
MS.gene75017.t1 | MTR_3g061350 | 31.183 | 186 | 90 | 3 | 1 | 178 | 42 | 197 | 4.37e-24 | 97.4 |
MS.gene75017.t1 | MTR_7g050580 | 30.244 | 205 | 96 | 5 | 3 | 197 | 47 | 214 | 5.70e-23 | 94.7 |
MS.gene75017.t1 | MTR_3g061340 | 32.961 | 179 | 86 | 6 | 1 | 178 | 42 | 187 | 6.86e-23 | 94.0 |
MS.gene75017.t1 | MTR_3g061320 | 36.752 | 117 | 67 | 2 | 1 | 110 | 42 | 158 | 1.02e-20 | 88.2 |
MS.gene75017.t1 | MTR_3g061310 | 29.474 | 190 | 97 | 5 | 1 | 183 | 42 | 201 | 7.21e-20 | 85.9 |
MS.gene75017.t1 | MTR_5g044670 | 29.442 | 197 | 96 | 6 | 3 | 183 | 50 | 219 | 4.78e-19 | 84.3 |
MS.gene75017.t1 | MTR_7g050640 | 48.387 | 62 | 32 | 0 | 1 | 62 | 45 | 106 | 3.57e-18 | 77.4 |
MS.gene75017.t1 | MTR_1g035570 | 29.843 | 191 | 109 | 6 | 1 | 187 | 37 | 206 | 2.23e-12 | 65.9 |
MS.gene75017.t1 | MTR_3g005480 | 27.083 | 144 | 89 | 3 | 3 | 130 | 55 | 198 | 3.23e-12 | 64.7 |
MS.gene75017.t1 | MTR_3g005420 | 31.667 | 120 | 63 | 3 | 3 | 122 | 323 | 423 | 4.37e-12 | 65.1 |
MS.gene75017.t1 | MTR_4g068320 | 37.838 | 74 | 46 | 0 | 3 | 76 | 40 | 113 | 6.54e-12 | 64.3 |
MS.gene75017.t1 | MTR_3g005490 | 27.083 | 144 | 89 | 3 | 3 | 130 | 55 | 198 | 1.60e-11 | 62.4 |
MS.gene75017.t1 | MTR_6g061070 | 27.083 | 192 | 121 | 5 | 3 | 183 | 52 | 235 | 1.86e-11 | 63.2 |
MS.gene75017.t1 | MTR_1g034240 | 34.951 | 103 | 52 | 3 | 3 | 90 | 41 | 143 | 2.91e-11 | 62.8 |
MS.gene75017.t1 | MTR_3g061220 | 34.831 | 89 | 39 | 2 | 1 | 83 | 42 | 117 | 3.60e-11 | 58.9 |
MS.gene75017.t1 | MTR_1g021290 | 37.500 | 96 | 47 | 2 | 3 | 85 | 189 | 284 | 5.81e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75017.t1 | AT3G18990 | 29.907 | 214 | 117 | 7 | 3 | 183 | 40 | 253 | 4.83e-17 | 79.0 |
MS.gene75017.t1 | AT3G18990 | 29.907 | 214 | 117 | 7 | 3 | 183 | 40 | 253 | 9.32e-17 | 78.2 |
MS.gene75017.t1 | AT1G49475 | 36.471 | 85 | 50 | 1 | 3 | 87 | 67 | 147 | 7.99e-12 | 62.4 |
Find 37 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAACAATCCAATTGAAATTT+TGG | 0.104888 | 1.3:+74228900 | MS.gene75017:CDS |
CCTAAACTTGTCCAAGTTAA+AGG | 0.118978 | 1.3:+74229045 | MS.gene75017:CDS |
GAACTTGAAATTTGTGATTT+TGG | 0.194976 | 1.3:-74228952 | None:intergenic |
GGAAATACATTTGACTAAAA+AGG | 0.231817 | 1.3:+74228702 | MS.gene75017:CDS |
CTTGACCATGCTTCACATTC+AGG | 0.239372 | 1.3:-74229198 | None:intergenic |
TATCATGACAGCAGTGAAAA+AGG | 0.253877 | 1.3:-74229290 | None:intergenic |
CCTTTAACTTGGACAAGTTT+AGG | 0.279816 | 1.3:-74229045 | None:intergenic |
CAGATAAAATTGACCTTCTA+TGG | 0.281168 | 1.3:+74230794 | MS.gene75017:CDS |
ATCTGTTGCATTGGTATGTA+AGG | 0.342082 | 1.3:-74230776 | None:intergenic |
TGCTCATCCAAAATTTCAAT+TGG | 0.347442 | 1.3:-74228907 | None:intergenic |
GAAATTGAATATCGTGTTGA+CGG | 0.403003 | 1.3:+74228859 | MS.gene75017:CDS |
CTTCACATTCAGGCATTTAG+TGG | 0.427188 | 1.3:-74229188 | None:intergenic |
ATATTTGGATTCAAAGGGGT+TGG | 0.428451 | 1.3:+74228731 | MS.gene75017:CDS |
ATTTCCCATTCTTTCTCATC+GGG | 0.433534 | 1.3:-74228685 | None:intergenic |
ATGGTGATATTTGGATTCAA+AGG | 0.444319 | 1.3:+74228725 | MS.gene75017:CDS |
AATTTATTATACCTTTAACT+TGG | 0.446187 | 1.3:-74229056 | None:intergenic |
GGACTAATAAATACCATAGA+AGG | 0.457741 | 1.3:-74230807 | None:intergenic |
TGGTGATATTTGGATTCAAA+GGG | 0.458234 | 1.3:+74228726 | MS.gene75017:CDS |
GGTCTACTCTTCTTGTGAGA+AGG | 0.460496 | 1.3:-74228931 | None:intergenic |
CGGTAATAACATCTCCCAAT+TGG | 0.460897 | 1.3:-74230730 | None:intergenic |
TTGGATTCAAAGGGGTTGGA+AGG | 0.464926 | 1.3:+74228735 | MS.gene75017:CDS |
GACGCAGTTAGGCAACCAAT+TGG | 0.465891 | 1.3:+74230715 | MS.gene75017:CDS |
AGACTCCCGATGAGAAAGAA+TGG | 0.468520 | 1.3:+74228680 | MS.gene75017:CDS |
ACACATTATTCATTAGATCA+TGG | 0.484576 | 1.3:+74228766 | MS.gene75017:CDS |
TATTTCCCATTCTTTCTCAT+CGG | 0.492052 | 1.3:-74228686 | None:intergenic |
GACTCCCGATGAGAAAGAAT+GGG | 0.507920 | 1.3:+74228681 | MS.gene75017:CDS |
ACGCAGTTAGGCAACCAATT+GGG | 0.523398 | 1.3:+74230716 | MS.gene75017:CDS |
TCGGGAGTCTTGAGAAACAT+TGG | 0.550403 | 1.3:-74228667 | None:intergenic |
AATAAATCTTTGCATAATTG+CGG | 0.557068 | 1.3:-74230750 | None:intergenic |
TTCATTAGATCATGGTCACA+TGG | 0.571925 | 1.3:+74228774 | MS.gene75017:CDS |
GGTGATATTTGGATTCAAAG+GGG | 0.604343 | 1.3:+74228727 | MS.gene75017:CDS |
TTCATATGTTAATCAATACA+TGG | 0.607228 | 1.3:+74229315 | MS.gene75017:CDS |
ATTGACACAAGTGAAGATGT+CGG | 0.614793 | 1.3:+74228997 | MS.gene75017:CDS |
TATGTAAACCTCAAAATGAG+AGG | 0.618304 | 1.3:-74228818 | None:intergenic |
ACGGTAATAATCAACATGAA+CGG | 0.624679 | 1.3:+74228878 | MS.gene75017:CDS |
TGAAGCATGGTCAAGAGCAG+AGG | 0.641697 | 1.3:+74229206 | MS.gene75017:CDS |
AAATGCCTGAATGTGAAGCA+TGG | 0.702749 | 1.3:+74229193 | MS.gene75017:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGATTACTAATAACTTTA+TGG | - | chr1.3:74229738-74229757 | None:intergenic | 15.0% |
!! | AATTTATTATACCTTTAACT+TGG | - | chr1.3:74229059-74229078 | None:intergenic | 15.0% |
!!! | ACTTTTGTTCAAAATTTAAA+GGG | - | chr1.3:74229464-74229483 | None:intergenic | 15.0% |
!!! | ATCTGATAATAATTTGAAAT+TGG | + | chr1.3:74229593-74229612 | MS.gene75017:intron | 15.0% |
!!! | TAAAGTTATTAGTAATCTTT+TGG | + | chr1.3:74229738-74229757 | MS.gene75017:intron | 15.0% |
!!! | TAATACAAAATGTTGTTTAA+TGG | + | chr1.3:74229990-74230009 | MS.gene75017:intron | 15.0% |
!!! | TACTTTTGTTCAAAATTTAA+AGG | - | chr1.3:74229465-74229484 | None:intergenic | 15.0% |
!!! | TCTGATAATAATTTGAAATT+GGG | + | chr1.3:74229594-74229613 | MS.gene75017:intron | 15.0% |
!! | AAAACTATTATGTCGTATAA+AGG | + | chr1.3:74229858-74229877 | MS.gene75017:intron | 20.0% |
!! | AATAAATCTTTGCATAATTG+CGG | - | chr1.3:74230753-74230772 | None:intergenic | 20.0% |
!! | AATCACTAGATATATGTATT+TGG | - | chr1.3:74230350-74230369 | None:intergenic | 20.0% |
!! | AGGTATAATAAATTCATGAT+TGG | + | chr1.3:74229065-74229084 | MS.gene75017:intron | 20.0% |
!! | TTCATATGTTAATCAATACA+TGG | + | chr1.3:74229315-74229334 | MS.gene75017:CDS | 20.0% |
!!! | AATTAGTACTTTAAAAGCAT+AGG | - | chr1.3:74229655-74229674 | None:intergenic | 20.0% |
!!! | AATTGATTATATGCTTTTGT+TGG | + | chr1.3:74230130-74230149 | MS.gene75017:intron | 20.0% |
!!! | TCAATTCTCAATTTTTTAAG+TGG | - | chr1.3:74228982-74229001 | None:intergenic | 20.0% |
!!! | TTTTGAACAAAAGTATTTGA+AGG | + | chr1.3:74229470-74229489 | MS.gene75017:intron | 20.0% |
! | ACACATTATTCATTAGATCA+TGG | + | chr1.3:74228766-74228785 | MS.gene75017:CDS | 25.0% |
! | ATACATTTGACTAAAAAGGA+TGG | + | chr1.3:74228706-74228725 | MS.gene75017:CDS | 25.0% |
! | CATAAATACATATTCCTTAC+TGG | - | chr1.3:74230318-74230337 | None:intergenic | 25.0% |
! | GGAAATACATTTGACTAAAA+AGG | + | chr1.3:74228702-74228721 | MS.gene75017:CDS | 25.0% |
! | TGTAGAAGAAAATAAATTGC+AGG | + | chr1.3:74230623-74230642 | MS.gene75017:intron | 25.0% |
! | TGTATGAGAAAAATTAGTAG+CGG | + | chr1.3:74229555-74229574 | MS.gene75017:intron | 25.0% |
!! | GAACAATCCAATTGAAATTT+TGG | + | chr1.3:74228900-74228919 | MS.gene75017:CDS | 25.0% |
!! | GAACTTGAAATTTGTGATTT+TGG | - | chr1.3:74228955-74228974 | None:intergenic | 25.0% |
!! | GTTTCTTTTACAGTTAGTTA+GGG | - | chr1.3:74230443-74230462 | None:intergenic | 25.0% |
!! | TGTTTCTTTTACAGTTAGTT+AGG | - | chr1.3:74230444-74230463 | None:intergenic | 25.0% |
!!! | CTCAAATTGATAGTGAAATT+TGG | - | chr1.3:74230270-74230289 | None:intergenic | 25.0% |
ACGGTAATAATCAACATGAA+CGG | + | chr1.3:74228878-74228897 | MS.gene75017:CDS | 30.0% | |
ATGGTGATATTTGGATTCAA+AGG | + | chr1.3:74228725-74228744 | MS.gene75017:CDS | 30.0% | |
ATTCAACTTCAAATTCCCAA+AGG | - | chr1.3:74229911-74229930 | None:intergenic | 30.0% | |
CAAAATTTAAAGGGACATAC+TGG | - | chr1.3:74229455-74229474 | None:intergenic | 30.0% | |
CAGATAAAATTGACCTTCTA+TGG | + | chr1.3:74230794-74230813 | MS.gene75017:CDS | 30.0% | |
CTAAAAAGGATGGTGATATT+TGG | + | chr1.3:74228716-74228735 | MS.gene75017:CDS | 30.0% | |
CTAGTGATTATGCTTAAAAC+TGG | + | chr1.3:74230361-74230380 | MS.gene75017:intron | 30.0% | |
CTTTATGGAAAAAACCATCT+TGG | - | chr1.3:74229723-74229742 | None:intergenic | 30.0% | |
GAAATTGAATATCGTGTTGA+CGG | + | chr1.3:74228859-74228878 | MS.gene75017:CDS | 30.0% | |
TACAGTTTGAGGAAAAATTG+TGG | + | chr1.3:74230535-74230554 | MS.gene75017:intron | 30.0% | |
TATGTAAACCTCAAAATGAG+AGG | - | chr1.3:74228821-74228840 | None:intergenic | 30.0% | |
TATTTCCCATTCTTTCTCAT+CGG | - | chr1.3:74228689-74228708 | None:intergenic | 30.0% | |
TGCTATTGATCATCTCAAAA+AGG | - | chr1.3:74229629-74229648 | None:intergenic | 30.0% | |
TGCTCATCCAAAATTTCAAT+TGG | - | chr1.3:74228910-74228929 | None:intergenic | 30.0% | |
TGGTGATATTTGGATTCAAA+GGG | + | chr1.3:74228726-74228745 | MS.gene75017:CDS | 30.0% | |
TTCAACTTCAAATTCCCAAA+GGG | - | chr1.3:74229910-74229929 | None:intergenic | 30.0% | |
! | AACATTGCAGTCTTCTTTTT+GGG | - | chr1.3:74230516-74230535 | None:intergenic | 30.0% |
! | CAATTTGAGATCAAGTCATT+GGG | + | chr1.3:74230281-74230300 | MS.gene75017:intron | 30.0% |
! | CTCTTCTGAGAAATTGAATA+TGG | - | chr1.3:74229158-74229177 | None:intergenic | 30.0% |
! | CTTAGCTTCAGAATTTTTGA+AGG | - | chr1.3:74230211-74230230 | None:intergenic | 30.0% |
! | CTTGATGTTCATATTTTCAG+AGG | + | chr1.3:74230693-74230712 | MS.gene75017:intron | 30.0% |
! | GTCAATTTTATCTGTTGCAT+TGG | - | chr1.3:74230788-74230807 | None:intergenic | 30.0% |
! | TAACATTGCAGTCTTCTTTT+TGG | - | chr1.3:74230517-74230536 | None:intergenic | 30.0% |
! | TCAATTTGAGATCAAGTCAT+TGG | + | chr1.3:74230280-74230299 | MS.gene75017:intron | 30.0% |
! | TTTAGGAATGTTTTGCGATT+TGG | - | chr1.3:74229031-74229050 | None:intergenic | 30.0% |
!!! | GAAATTTGGTTTTTCCAAAG+TGG | - | chr1.3:74230256-74230275 | None:intergenic | 30.0% |
AAGCACAAAATCTTCCTTGT+TGG | - | chr1.3:74230676-74230695 | None:intergenic | 35.0% | |
ATATTTGGATTCAAAGGGGT+TGG | + | chr1.3:74228731-74228750 | MS.gene75017:CDS | 35.0% | |
ATCAAGCAGTATTGTCAAGA+TGG | + | chr1.3:74229929-74229948 | MS.gene75017:intron | 35.0% | |
ATCATGACAGCAGTGAAAAA+GGG | - | chr1.3:74229292-74229311 | None:intergenic | 35.0% | |
ATTAACTGGTTAGAAACTGC+AGG | + | chr1.3:74229816-74229835 | MS.gene75017:intron | 35.0% | |
ATTGACACAAGTGAAGATGT+CGG | + | chr1.3:74228997-74229016 | MS.gene75017:CDS | 35.0% | |
ATTTCCCATTCTTTCTCATC+GGG | - | chr1.3:74228688-74228707 | None:intergenic | 35.0% | |
CAAAGTGGATGTGAATTGAT+TGG | - | chr1.3:74230241-74230260 | None:intergenic | 35.0% | |
CAATCAATTCACATCCACTT+TGG | + | chr1.3:74230239-74230258 | MS.gene75017:intron | 35.0% | |
CCTAAACTTGTCCAAGTTAA+AGG | + | chr1.3:74229045-74229064 | MS.gene75017:CDS | 35.0% | |
CGTGAGTCGTAAAAAAATAG+AGG | - | chr1.3:74230039-74230058 | None:intergenic | 35.0% | |
GAAGAAAATAAATTGCAGGC+TGG | + | chr1.3:74230627-74230646 | MS.gene75017:intron | 35.0% | |
GATTATGCTTAAAACTGGAG+TGG | + | chr1.3:74230366-74230385 | MS.gene75017:intron | 35.0% | |
GGATAATACATCACTTGTAC+AGG | - | chr1.3:74230561-74230580 | None:intergenic | 35.0% | |
GGTGATATTTGGATTCAAAG+GGG | + | chr1.3:74228727-74228746 | MS.gene75017:CDS | 35.0% | |
TATCATGACAGCAGTGAAAA+AGG | - | chr1.3:74229293-74229312 | None:intergenic | 35.0% | |
TCATCCTTTGAATCAGTTCA+TGG | + | chr1.3:74229786-74229805 | MS.gene75017:intron | 35.0% | |
TTCATGGAGATGGAATTAAC+TGG | + | chr1.3:74229802-74229821 | MS.gene75017:intron | 35.0% | |
TTCATTAGATCATGGTCACA+TGG | + | chr1.3:74228774-74228793 | MS.gene75017:CDS | 35.0% | |
TTTGAATCAGTTCATGGAGA+TGG | + | chr1.3:74229792-74229811 | MS.gene75017:intron | 35.0% | |
! | ATCTCCATGAACTGATTCAA+AGG | - | chr1.3:74229793-74229812 | None:intergenic | 35.0% |
! | ATCTGTTGCATTGGTATGTA+AGG | - | chr1.3:74230779-74230798 | None:intergenic | 35.0% |
! | TCAGAAAACCTCTCATTTTG+AGG | + | chr1.3:74228810-74228829 | MS.gene75017:CDS | 35.0% |
! | TGAGAAAAATTAGTAGCGGA+TGG | + | chr1.3:74229559-74229578 | MS.gene75017:intron | 35.0% |
!! | CCTTTAACTTGGACAAGTTT+AGG | - | chr1.3:74229048-74229067 | None:intergenic | 35.0% |
!! | TCAGAATTTTTGAAGGAGCA+TGG | - | chr1.3:74230204-74230223 | None:intergenic | 35.0% |
AAATGCCTGAATGTGAAGCA+TGG | + | chr1.3:74229193-74229212 | MS.gene75017:CDS | 40.0% | |
AACCATCTTGGATTACCTTG+TGG | - | chr1.3:74229711-74229730 | None:intergenic | 40.0% | |
AACTCAAAGAAACTCACTGC+AGG | + | chr1.3:74230173-74230192 | MS.gene75017:intron | 40.0% | |
CGGTAATAACATCTCCCAAT+TGG | - | chr1.3:74230733-74230752 | None:intergenic | 40.0% | |
CTTCACATTCAGGCATTTAG+TGG | - | chr1.3:74229191-74229210 | None:intergenic | 40.0% | |
GACTGCAATGTTACAGTTTG+AGG | + | chr1.3:74230524-74230543 | MS.gene75017:intron | 40.0% | |
TCATTCTCGAGCAAGTACTT+GGG | + | chr1.3:74230489-74230508 | MS.gene75017:intron | 40.0% | |
TCTTGGATGATGAGAGAACT+TGG | + | chr1.3:74229520-74229539 | MS.gene75017:intron | 40.0% | |
TTCATTCTCGAGCAAGTACT+TGG | + | chr1.3:74230488-74230507 | MS.gene75017:intron | 40.0% | |
! | TATTTTCAGAGGACGCAGTT+AGG | + | chr1.3:74230704-74230723 | MS.gene75017:intron | 40.0% |
!! | TGTTTTTGTGCTTGCCAACA+AGG | + | chr1.3:74230659-74230678 | MS.gene75017:intron | 40.0% |
AAAGAAACTCACTGCAGGCT+AGG | + | chr1.3:74230178-74230197 | MS.gene75017:intron | 45.0% | |
ACGCAGTTAGGCAACCAATT+GGG | + | chr1.3:74230716-74230735 | MS.gene75017:CDS | 45.0% | |
AGACTCCCGATGAGAAAGAA+TGG | + | chr1.3:74228680-74228699 | MS.gene75017:CDS | 45.0% | |
ATCCGAACCAGCAACAAAGT+TGG | + | chr1.3:74230581-74230600 | MS.gene75017:intron | 45.0% | |
ATCGTTGTTGTGACTCCCTT+TGG | + | chr1.3:74229892-74229911 | MS.gene75017:intron | 45.0% | |
CAACAAAGTTGGGTGAAGGT+TGG | + | chr1.3:74230592-74230611 | MS.gene75017:intron | 45.0% | |
CACCACAAGGTAATCCAAGA+TGG | + | chr1.3:74229706-74229725 | MS.gene75017:intron | 45.0% | |
CATCTTGGATTACCTTGTGG+TGG | - | chr1.3:74229708-74229727 | None:intergenic | 45.0% | |
CTCATCATCCAAGACCTGAA+GGG | - | chr1.3:74229514-74229533 | None:intergenic | 45.0% | |
CTTGACCATGCTTCACATTC+AGG | - | chr1.3:74229201-74229220 | None:intergenic | 45.0% | |
GACTCCCGATGAGAAAGAAT+GGG | + | chr1.3:74228681-74228700 | MS.gene75017:CDS | 45.0% | |
GGGATGTTTACAGACCAGTA+AGG | + | chr1.3:74230301-74230320 | MS.gene75017:intron | 45.0% | |
GGTCTACTCTTCTTGTGAGA+AGG | - | chr1.3:74228934-74228953 | None:intergenic | 45.0% | |
TCCGAACCAGCAACAAAGTT+GGG | + | chr1.3:74230582-74230601 | MS.gene75017:intron | 45.0% | |
TCGTTGTTGTGACTCCCTTT+GGG | + | chr1.3:74229893-74229912 | MS.gene75017:intron | 45.0% | |
TCTCATCATCCAAGACCTGA+AGG | - | chr1.3:74229515-74229534 | None:intergenic | 45.0% | |
TTGAGTTTCCTTCGTTCCTG+AGG | - | chr1.3:74230160-74230179 | None:intergenic | 45.0% | |
TTGGATTCAAAGGGGTTGGA+AGG | + | chr1.3:74228735-74228754 | MS.gene75017:CDS | 45.0% | |
! | ACCCAACTTTGTTGCTGGTT+CGG | - | chr1.3:74230586-74230605 | None:intergenic | 45.0% |
! | TGCTTTTGTTGGCATACCTC+AGG | + | chr1.3:74230141-74230160 | MS.gene75017:intron | 45.0% |
! | TGGATTACCTTGTGGTGGAA+GGG | - | chr1.3:74229703-74229722 | None:intergenic | 45.0% |
! | TTGGATTACCTTGTGGTGGA+AGG | - | chr1.3:74229704-74229723 | None:intergenic | 45.0% |
!! | AACTTTGTTGCTGGTTCGGA+TGG | - | chr1.3:74230582-74230601 | None:intergenic | 45.0% |
CAACATTCCCTTCCACCACA+AGG | + | chr1.3:74229693-74229712 | MS.gene75017:intron | 50.0% | |
CCAGCAACAAAGTTGGGTGA+AGG | + | chr1.3:74230588-74230607 | MS.gene75017:intron | 50.0% | |
CCTTCACCCAACTTTGTTGC+TGG | - | chr1.3:74230591-74230610 | None:intergenic | 50.0% | |
GACGCAGTTAGGCAACCAAT+TGG | + | chr1.3:74230715-74230734 | MS.gene75017:CDS | 50.0% | |
TGAAGCATGGTCAAGAGCAG+AGG | + | chr1.3:74229206-74229225 | MS.gene75017:CDS | 50.0% | |
TTGGCATACCTCAGGAACGA+AGG | + | chr1.3:74230149-74230168 | MS.gene75017:intron | 50.0% | |
CGAAATCGCCCTTCAGGTCT+TGG | + | chr1.3:74229503-74229522 | MS.gene75017:intron | 55.0% | |
GCAAAGCGAAATCGCCCTTC+AGG | + | chr1.3:74229497-74229516 | MS.gene75017:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 74228670 | 74230826 | 74228670 | ID=MS.gene75017 |
chr1.3 | mRNA | 74228670 | 74230826 | 74228670 | ID=MS.gene75017.t1;Parent=MS.gene75017 |
chr1.3 | exon | 74228670 | 74229066 | 74228670 | ID=MS.gene75017.t1.exon1;Parent=MS.gene75017.t1 |
chr1.3 | CDS | 74228670 | 74229066 | 74228670 | ID=cds.MS.gene75017.t1;Parent=MS.gene75017.t1 |
chr1.3 | exon | 74229173 | 74229336 | 74229173 | ID=MS.gene75017.t1.exon2;Parent=MS.gene75017.t1 |
chr1.3 | CDS | 74229173 | 74229336 | 74229173 | ID=cds.MS.gene75017.t1;Parent=MS.gene75017.t1 |
chr1.3 | exon | 74230713 | 74230826 | 74230713 | ID=MS.gene75017.t1.exon3;Parent=MS.gene75017.t1 |
chr1.3 | CDS | 74230713 | 74230826 | 74230713 | ID=cds.MS.gene75017.t1;Parent=MS.gene75017.t1 |
Gene Sequence |
Protein sequence |