AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75041

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75041.t1 MTR_6g090380 96.053 380 12 2 1 380 1 377 0.0 754
MS.gene75041.t1 MTR_8g102100 58.435 409 106 10 1 379 1 375 9.54e-150 428
MS.gene75041.t1 MTR_3g103960 47.896 309 102 13 76 379 23 277 8.42e-81 249
MS.gene75041.t1 MTR_4g078660 68.548 124 37 1 86 207 40 163 4.12e-61 199
MS.gene75041.t1 MTR_2g090605 77.885 104 23 0 104 207 77 180 1.45e-60 201
MS.gene75041.t1 MTR_7g092070 56.111 180 63 3 85 252 245 420 9.71e-59 203
MS.gene75041.t1 MTR_3g029590 53.552 183 66 4 85 252 245 423 2.14e-56 196
MS.gene75041.t1 MTR_5g082830 45.778 225 97 5 85 287 198 419 4.15e-54 189
MS.gene75041.t1 MTR_5g071070 43.966 232 92 6 77 275 114 340 7.92e-54 188
MS.gene75041.t1 MTR_5g071070 43.966 232 92 6 77 275 196 422 2.59e-53 187
MS.gene75041.t1 MTR_1g075890 69.159 107 33 0 100 206 225 331 7.63e-51 180
MS.gene75041.t1 MTR_1g050438 65.421 107 37 0 100 206 224 330 1.13e-49 176
MS.gene75041.t1 MTR_3g435680 61.475 122 45 1 85 206 134 253 2.22e-49 171
MS.gene75041.t1 MTR_0728s0020 65.421 107 37 0 100 206 240 346 2.26e-49 176
MS.gene75041.t1 MTR_3g070880 51.034 145 62 2 99 243 158 293 1.46e-47 169
MS.gene75041.t1 MTR_3g435590 49.068 161 73 3 100 254 234 391 1.50e-46 165
MS.gene75041.t1 MTR_3g464270 48.101 158 69 6 103 251 8 161 4.37e-39 143
MS.gene75041.t1 MTR_3g464260 52.000 125 50 2 135 252 212 333 3.83e-34 132
MS.gene75041.t1 MTR_3g464290 58.025 81 33 1 98 177 94 174 4.20e-29 117
MS.gene75041.t1 MTR_3g464280 31.140 228 107 5 98 317 182 367 1.25e-22 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75041.t1 AT4G29190 51.870 401 115 12 4 379 8 355 4.89e-123 359
MS.gene75041.t1 AT2G19810 51.020 392 130 10 6 379 11 358 1.22e-115 341
MS.gene75041.t1 AT2G25900 46.045 354 138 8 4 352 9 314 1.50e-89 273
MS.gene75041.t1 AT2G25900 46.045 354 138 8 4 352 9 314 1.50e-89 273
MS.gene75041.t1 AT2G41900 66.165 133 42 1 74 206 234 363 8.45e-59 203
MS.gene75041.t1 AT1G03790 72.973 111 29 1 98 207 76 186 4.38e-58 194
MS.gene75041.t1 AT5G12850 52.486 181 79 1 79 252 232 412 4.88e-57 198
MS.gene75041.t1 AT5G44260 72.072 111 30 1 98 207 54 164 9.48e-57 190
MS.gene75041.t1 AT5G58620 52.514 179 70 3 85 251 190 365 1.66e-56 195
MS.gene75041.t1 AT2G40140 53.143 175 75 3 87 260 197 365 5.30e-53 185
MS.gene75041.t1 AT2G40140 53.143 175 75 3 87 260 197 365 5.30e-53 185
MS.gene75041.t1 AT3G55980 51.934 181 70 4 87 260 194 364 2.25e-52 183
MS.gene75041.t1 AT3G55980 51.934 181 70 4 87 260 261 431 6.07e-52 183
MS.gene75041.t1 AT5G07500 59.701 134 52 1 73 206 23 154 2.25e-50 169

Find 114 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATTCTTTCTTCTTATTT+TGG 0.118905 6.3:+83369790 MS.gene75041:CDS
GGGTTGGTGGGTTTGATTTA+TGG 0.119649 6.3:+83370658 MS.gene75041:CDS
CTTTCAACTCTCTCCATTAT+AGG 0.177073 6.3:-83370702 None:intergenic
TTGAAAGTGGAAGAGATATT+AGG 0.228511 6.3:+83370718 MS.gene75041:CDS
ATAGTAACATTCCTATTAAT+TGG 0.241559 6.3:-83370531 None:intergenic
TGGGAATTCGGGTTTGGGTT+TGG 0.285586 6.3:+83370791 MS.gene75041:CDS
GGTTGGTGGGTTTGATTTAT+GGG 0.285810 6.3:+83370659 MS.gene75041:CDS
TGAGAATGGGAATTCGGGTT+TGG 0.308000 6.3:+83370785 MS.gene75041:CDS
GAGAATGGGAATTCGGGTTT+GGG 0.321254 6.3:+83370786 MS.gene75041:CDS
CCGGGTTTAGGCCGGGTTGG+TGG 0.326895 6.3:+83370645 MS.gene75041:CDS
TGAAAACTATGCCAATTAAT+AGG 0.328736 6.3:+83370520 MS.gene75041:CDS
TCCGGCATCGGCGGCGGCGG+CGG 0.332930 6.3:+83369981 MS.gene75041:CDS
TCCACCGGTGATTACTCTTC+CGG 0.334046 6.3:+83369877 MS.gene75041:CDS
GGAGAATGAGAATGGGAATT+CGG 0.344965 6.3:+83370779 MS.gene75041:CDS
ATTAATAGGAATGTTACTAT+TGG 0.347132 6.3:+83370534 MS.gene75041:CDS
GTCGTTTCGTAATTTACAAT+TGG 0.353057 6.3:+83370491 MS.gene75041:CDS
TGAAAGTGGAAGAGATATTA+GGG 0.354237 6.3:+83370719 MS.gene75041:CDS
GAGAATGAGAATGGGAATTC+GGG 0.361455 6.3:+83370780 MS.gene75041:CDS
CAGTTTCCTTTACGAAAATC+AGG 0.366299 6.3:-83370174 None:intergenic
CGGTTCTCCGTTACGACAAA+TGG 0.366550 6.3:+83370401 MS.gene75041:CDS
TCGGGTTTGGGTTTGGATGC+GGG 0.376728 6.3:+83370798 MS.gene75041:CDS
TTCGGGTTTGGGTTTGGATG+CGG 0.380726 6.3:+83370797 MS.gene75041:CDS
TCGTTTCGTAATTTACAATT+GGG 0.384486 6.3:+83370492 MS.gene75041:CDS
ATTAAGCAAAGAAAATTCAT+TGG 0.406900 6.3:+83370758 MS.gene75041:CDS
GAAGCGCTGCAAGTGCTTCT+CGG 0.409877 6.3:-83369912 None:intergenic
ATCGGCGGCGAAGGAGATTC+TGG 0.412112 6.3:-83370441 None:intergenic
ATCTCCGGCATCGGCGGCGG+CGG 0.417722 6.3:+83369978 MS.gene75041:CDS
GTCAACCCGGTCCTGATGTT+GGG 0.417880 6.3:+83370820 MS.gene75041:CDS
TTGTGAAGAGGAGCCTATAA+TGG 0.419641 6.3:+83370689 MS.gene75041:CDS
CGGCGGCGTGCTTTCTCGCC+GGG 0.433922 6.3:-83370114 None:intergenic
GCCGTTTGATCATCATGATT+CGG 0.436898 6.3:-83369766 None:intergenic
CGATTCTGATTTAGAATCTC+CGG 0.438051 6.3:+83369963 MS.gene75041:CDS
GGTCAACCCGGTCCTGATGT+TGG 0.438292 6.3:+83370819 MS.gene75041:CDS
GAATCGTTGAACTCGTTTGA+CGG 0.440489 6.3:-83369946 None:intergenic
AATTCATTGGAGAATGAGAA+TGG 0.446609 6.3:+83370771 MS.gene75041:CDS
CGTAAAGGAAACTGTAAGAA+AGG 0.457732 6.3:+83370183 MS.gene75041:CDS
GGAGAACCGTCATACGAATC+TGG 0.463298 6.3:-83370387 None:intergenic
CAACGGTTCATGTTCCTCCT+TGG 0.464865 6.3:+83369743 MS.gene75041:CDS
AGAATCTCCGGCATCGGCGG+CGG 0.471287 6.3:+83369975 MS.gene75041:CDS
CGGGTTTAGGCCGGGTTGGT+GGG 0.471920 6.3:+83370646 MS.gene75041:CDS
ACGGCGGCGTGCTTTCTCGC+CGG 0.477321 6.3:-83370115 None:intergenic
ATCGGTGACATCGGCGGCGA+AGG 0.483470 6.3:-83370450 None:intergenic
CGTCTTTACACGGCTGAGTA+CGG 0.485485 6.3:-83370263 None:intergenic
ATTCATTGGAGAATGAGAAT+GGG 0.487170 6.3:+83370772 MS.gene75041:CDS
GGCGGCGGCGGCGGATTCTA+CGG 0.488265 6.3:+83369990 MS.gene75041:CDS
GCAAACACGGCGGCGACAGC+TGG 0.489963 6.3:-83370289 None:intergenic
TCACAAACCCACCCAACATC+AGG 0.492003 6.3:-83370831 None:intergenic
GAATGTTACTATTGGTTCAC+CGG 0.498343 6.3:+83370542 MS.gene75041:CDS
TTCTCGCCGGGATGTGCGTA+TGG 0.499904 6.3:-83370102 None:intergenic
TTTGGGTCACCGCTTCGGTC+CGG 0.502096 6.3:+83370588 MS.gene75041:CDS
AACCCACCCAACATCAGGAC+CGG 0.507115 6.3:-83370826 None:intergenic
GCCGAATCATGATGATCAAA+CGG 0.508151 6.3:+83369765 MS.gene75041:CDS
ACCCGGTCCTGATGTTGGGT+GGG 0.513166 6.3:+83370824 MS.gene75041:CDS
ACGTTAAGACGGAGCTGCTC+CGG 0.516425 6.3:-83370327 None:intergenic
CCACCAACCCGGCCTAAACC+CGG 0.518833 6.3:-83370645 None:intergenic
AGCAGAGTCCATCTTCCTCT+CGG 0.519878 6.3:+83370352 MS.gene75041:CDS
AACCCGGTCCTGATGTTGGG+TGG 0.522130 6.3:+83370823 MS.gene75041:CDS
GCCGGCGATCTCACCGGCGC+CGG 0.528291 6.3:+83369832 MS.gene75041:CDS
GGTGAACCAGAACCGAAAAC+CGG 0.530214 6.3:-83370561 None:intergenic
TTAACACTCCGAGAGGAAGA+TGG 0.530641 6.3:-83370360 None:intergenic
AAAATCAGGACAAGCCGTAC+CGG 0.530716 6.3:-83370160 None:intergenic
CTGCAAGTGCTTCTCGGAGA+TGG 0.532581 6.3:-83369906 None:intergenic
AACAATGCCGGCGATCTCAC+CGG 0.537849 6.3:+83369826 MS.gene75041:CDS
GGTTTGGATGCGGGTCAACC+CGG 0.549221 6.3:+83370807 MS.gene75041:CDS
TGATTTAGAATCTCCGGCAT+CGG 0.549413 6.3:+83369969 MS.gene75041:CDS
AATGAAACTTCCTCGGATCA+CGG 0.551799 6.3:-83370134 None:intergenic
AACTCTCCAGATTCGTATGA+CGG 0.556291 6.3:+83370381 MS.gene75041:CDS
CGTACTCAGCCGTGTAAAGA+CGG 0.559308 6.3:+83370264 MS.gene75041:CDS
TACGATAACAATAACAATGC+CGG 0.559578 6.3:+83369814 MS.gene75041:CDS
AAACCGGGTTTAGGCCGGGT+TGG 0.560051 6.3:+83370642 MS.gene75041:CDS
GAAGTTTCATTACTCCGGTA+CGG 0.561534 6.3:+83370146 MS.gene75041:CDS
CAGCTGGTTCCGTCTTTACA+CGG 0.564199 6.3:-83370273 None:intergenic
TCCGGCGCCGGTGAGATCGC+CGG 0.564683 6.3:-83369833 None:intergenic
TTCGTAATTTACAATTGGGG+AGG 0.566121 6.3:+83370496 MS.gene75041:CDS
GGCTGAGTACGGTAACGAGC+AGG 0.567252 6.3:-83370252 None:intergenic
CCGAGGAAGTTTCATTACTC+CGG 0.569117 6.3:+83370141 MS.gene75041:CDS
ATCTCCGGTAGTGTAATCTC+CGG 0.569727 6.3:-83369851 None:intergenic
CACGTGGAAGATCACATGAC+TGG 0.574790 6.3:+83370070 MS.gene75041:CDS
GGTAGTGTAATCTCCGGCGC+CGG 0.576624 6.3:-83369845 None:intergenic
TTCGCCATCGGTGACATCGG+CGG 0.580138 6.3:-83370456 None:intergenic
GACTCTGCTGAACGTTAAGA+CGG 0.581166 6.3:-83370338 None:intergenic
TGATCATCATGATTCGGCCA+AGG 0.582191 6.3:-83369760 None:intergenic
CGTTTCGTAATTTACAATTG+GGG 0.584271 6.3:+83370493 MS.gene75041:CDS
TTCGCCGCCGATGTCACCGA+TGG 0.587560 6.3:+83370452 MS.gene75041:CDS
GGCGCCGGAGATTACACTAC+CGG 0.590957 6.3:+83369847 MS.gene75041:CDS
TTCTCGGAGATGGTAATCAC+CGG 0.596124 6.3:-83369896 None:intergenic
AAGCACGCCGCCGTGATCCG+AGG 0.597183 6.3:+83370124 MS.gene75041:CDS
ATAGTAACCATTTGTCGTAA+CGG 0.598472 6.3:-83370408 None:intergenic
CCGGAGTAATGAAACTTCCT+CGG 0.604275 6.3:-83370141 None:intergenic
ATGGGATCAGAGTTGTGAAG+AGG 0.606158 6.3:+83370677 MS.gene75041:CDS
TCATTCGCCATCGGTGACAT+CGG 0.607790 6.3:-83370459 None:intergenic
TTGCTTCTTCGCTCACACGC+CGG 0.608383 6.3:+83370308 MS.gene75041:CDS
GAGTGTCCATACGCACATCC+CGG 0.612951 6.3:+83370096 MS.gene75041:CDS
GTCACCATCTCATTCGCCAT+CGG 0.619203 6.3:-83370468 None:intergenic
TTTAGAATCTCCGGCATCGG+CGG 0.621860 6.3:+83369972 MS.gene75041:CDS
GTCACCGATGGCGAATGAGA+TGG 0.627160 6.3:+83370464 MS.gene75041:CDS
TTATCTTGAACTCGTACATG+CGG 0.628647 6.3:-83370038 None:intergenic
ATAATGGAGAGAGTTGAAAG+TGG 0.632760 6.3:+83370705 MS.gene75041:CDS
CAAGGAGGAACATGAACCGT+TGG 0.633061 6.3:-83369742 None:intergenic
TGGAAGATCACATGACTGGA+CGG 0.635001 6.3:+83370074 MS.gene75041:CDS
ATAAATCAAACCCACCAACC+CGG 0.643239 6.3:-83370656 None:intergenic
GACGCGTGTGAACACGCGCA+TGG 0.649749 6.3:+83370207 MS.gene75041:CDS
ACCGGAAGAGTAATCACCGG+TGG 0.651463 6.3:-83369878 None:intergenic
ACCCACCCAACATCAGGACC+GGG 0.651526 6.3:-83370825 None:intergenic
AAGATAAGAAGATGCGCACG+TGG 0.652747 6.3:+83370054 MS.gene75041:CDS
ATCACCGGAAGAGTAATCAC+CGG 0.655530 6.3:-83369881 None:intergenic
TGTGAGCGAAGAAGCAAACA+CGG 0.674890 6.3:-83370302 None:intergenic
GGCGGCGAAGGAGATTCTGG+TGG 0.678659 6.3:-83370438 None:intergenic
TCATCATGATTCGGCCAAGG+AGG 0.681712 6.3:-83369757 None:intergenic
GGCGGCGGCGGATTCTACGG+TGG 0.691096 6.3:+83369993 MS.gene75041:CDS
TGGAGAGTTAACACTCCGAG+AGG 0.702069 6.3:-83370367 None:intergenic
GATGCTGAGAGCTAATCCAA+CGG 0.723355 6.3:+83369726 MS.gene75041:CDS
GAAACTTCCTCGGATCACGG+CGG 0.765354 6.3:-83370131 None:intergenic
GAGCGAAGAAGCAAACACGG+CGG 0.843910 6.3:-83370299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAACATTCCTATTAAT+TGG - chr6.3:83370534-83370553 None:intergenic 20.0%
!! ATTAAGCAAAGAAAATTCAT+TGG + chr6.3:83370758-83370777 MS.gene75041:CDS 20.0%
!! ATTAATAGGAATGTTACTAT+TGG + chr6.3:83370534-83370553 MS.gene75041:CDS 20.0%
! TCGTTTCGTAATTTACAATT+GGG + chr6.3:83370492-83370511 MS.gene75041:CDS 25.0%
! TGAAAACTATGCCAATTAAT+AGG + chr6.3:83370520-83370539 MS.gene75041:CDS 25.0%
!!! GAGATTCTTTCTTCTTATTT+TGG + chr6.3:83369790-83369809 MS.gene75041:CDS 25.0%
AATTCATTGGAGAATGAGAA+TGG + chr6.3:83370771-83370790 MS.gene75041:CDS 30.0%
ATAGTAACCATTTGTCGTAA+CGG - chr6.3:83370411-83370430 None:intergenic 30.0%
ATTCATTGGAGAATGAGAAT+GGG + chr6.3:83370772-83370791 MS.gene75041:CDS 30.0%
ATTGGGCAAACTTAAAAAAC+CGG - chr6.3:83370610-83370629 None:intergenic 30.0%
CGTTTCGTAATTTACAATTG+GGG + chr6.3:83370493-83370512 MS.gene75041:CDS 30.0%
GTCGTTTCGTAATTTACAAT+TGG + chr6.3:83370491-83370510 MS.gene75041:CDS 30.0%
TACGATAACAATAACAATGC+CGG + chr6.3:83369814-83369833 MS.gene75041:CDS 30.0%
TGAAAGTGGAAGAGATATTA+GGG + chr6.3:83370719-83370738 MS.gene75041:CDS 30.0%
TTGAAAGTGGAAGAGATATT+AGG + chr6.3:83370718-83370737 MS.gene75041:CDS 30.0%
AATACCCCAACTAAAAAACC+GGG + chr6.3:83370627-83370646 MS.gene75041:CDS 35.0%
CAATACCCCAACTAAAAAAC+CGG + chr6.3:83370626-83370645 MS.gene75041:CDS 35.0%
CAGTTTCCTTTACGAAAATC+AGG - chr6.3:83370177-83370196 None:intergenic 35.0%
CGTAAAGGAAACTGTAAGAA+AGG + chr6.3:83370183-83370202 MS.gene75041:CDS 35.0%
CTTTCAACTCTCTCCATTAT+AGG - chr6.3:83370705-83370724 None:intergenic 35.0%
TTATCTTGAACTCGTACATG+CGG - chr6.3:83370041-83370060 None:intergenic 35.0%
TTCGTAATTTACAATTGGGG+AGG + chr6.3:83370496-83370515 MS.gene75041:CDS 35.0%
! ATAATGGAGAGAGTTGAAAG+TGG + chr6.3:83370705-83370724 MS.gene75041:CDS 35.0%
! CGATTCTGATTTAGAATCTC+CGG + chr6.3:83369963-83369982 MS.gene75041:CDS 35.0%
!! GAATGTTACTATTGGTTCAC+CGG + chr6.3:83370542-83370561 MS.gene75041:CDS 35.0%
!!! CTAAACCCGGTTTTTTAGTT+GGG - chr6.3:83370635-83370654 None:intergenic 35.0%
!!! GGTTTTTTAGTTGGGGTATT+GGG - chr6.3:83370627-83370646 None:intergenic 35.0%
!!! TAAACCCGGTTTTTTAGTTG+GGG - chr6.3:83370634-83370653 None:intergenic 35.0%
AACTCTCCAGATTCGTATGA+CGG + chr6.3:83370381-83370400 MS.gene75041:CDS 40.0%
AATGAAACTTCCTCGGATCA+CGG - chr6.3:83370137-83370156 None:intergenic 40.0%
ATAAATCAAACCCACCAACC+CGG - chr6.3:83370659-83370678 None:intergenic 40.0%
CCAACTAAAAAACCGGGTTT+AGG + chr6.3:83370633-83370652 MS.gene75041:CDS 40.0%
GAAGTTTCATTACTCCGGTA+CGG + chr6.3:83370146-83370165 MS.gene75041:CDS 40.0%
GAATCGTTGAACTCGTTTGA+CGG - chr6.3:83369949-83369968 None:intergenic 40.0%
GAGAATGAGAATGGGAATTC+GGG + chr6.3:83370780-83370799 MS.gene75041:CDS 40.0%
GCCGAATCATGATGATCAAA+CGG + chr6.3:83369765-83369784 MS.gene75041:CDS 40.0%
GCCGTTTGATCATCATGATT+CGG - chr6.3:83369769-83369788 None:intergenic 40.0%
GGAGAATGAGAATGGGAATT+CGG + chr6.3:83370779-83370798 MS.gene75041:CDS 40.0%
TTGTGAAGAGGAGCCTATAA+TGG + chr6.3:83370689-83370708 MS.gene75041:CDS 40.0%
! GCTTGTCCTGATTTTCGTAA+AGG + chr6.3:83370168-83370187 MS.gene75041:CDS 40.0%
! TGATTTAGAATCTCCGGCAT+CGG + chr6.3:83369969-83369988 MS.gene75041:CDS 40.0%
!! GGTTGGTGGGTTTGATTTAT+GGG + chr6.3:83370659-83370678 MS.gene75041:CDS 40.0%
!!! ACTATTGGTTCACCGGTTTT+CGG + chr6.3:83370549-83370568 MS.gene75041:CDS 40.0%
!!! CCTAAACCCGGTTTTTTAGT+TGG - chr6.3:83370636-83370655 None:intergenic 40.0%
!!! CGGTTTTTTAGTTGGGGTAT+TGG - chr6.3:83370628-83370647 None:intergenic 40.0%
AAAATCAGGACAAGCCGTAC+CGG - chr6.3:83370163-83370182 None:intergenic 45.0%
AAGATAAGAAGATGCGCACG+TGG + chr6.3:83370054-83370073 MS.gene75041:CDS 45.0%
ATCACCGGAAGAGTAATCAC+CGG - chr6.3:83369884-83369903 None:intergenic 45.0%
ATCACCGGTGGAAAAATCTC+CGG - chr6.3:83369869-83369888 None:intergenic 45.0%
ATCTCCGGTAGTGTAATCTC+CGG - chr6.3:83369854-83369873 None:intergenic 45.0%
ATGGGATCAGAGTTGTGAAG+AGG + chr6.3:83370677-83370696 MS.gene75041:CDS 45.0%
CCGAGGAAGTTTCATTACTC+CGG + chr6.3:83370141-83370160 MS.gene75041:CDS 45.0%
CCGGAGTAATGAAACTTCCT+CGG - chr6.3:83370144-83370163 None:intergenic 45.0%
CTAAAAAACCGGGTTTAGGC+CGG + chr6.3:83370637-83370656 MS.gene75041:CDS 45.0%
CTTAAAAAACCGGACCGAAG+CGG - chr6.3:83370600-83370619 None:intergenic 45.0%
GACTCTGCTGAACGTTAAGA+CGG - chr6.3:83370341-83370360 None:intergenic 45.0%
GATGCTGAGAGCTAATCCAA+CGG + chr6.3:83369726-83369745 MS.gene75041:CDS 45.0%
TAAAAAACCGGGTTTAGGCC+GGG + chr6.3:83370638-83370657 MS.gene75041:CDS 45.0%
TGGAAGATCACATGACTGGA+CGG + chr6.3:83370074-83370093 MS.gene75041:CDS 45.0%
TGTGAGCGAAGAAGCAAACA+CGG - chr6.3:83370305-83370324 None:intergenic 45.0%
TTAACACTCCGAGAGGAAGA+TGG - chr6.3:83370363-83370382 None:intergenic 45.0%
TTCTCGGAGATGGTAATCAC+CGG - chr6.3:83369899-83369918 None:intergenic 45.0%
! ACTACCGGAGATTTTTCCAC+CGG + chr6.3:83369862-83369881 MS.gene75041:CDS 45.0%
! GAGAATGGGAATTCGGGTTT+GGG + chr6.3:83370786-83370805 MS.gene75041:CDS 45.0%
! TGAGAATGGGAATTCGGGTT+TGG + chr6.3:83370785-83370804 MS.gene75041:CDS 45.0%
! TGATCATCATGATTCGGCCA+AGG - chr6.3:83369763-83369782 None:intergenic 45.0%
!! GGGTTGGTGGGTTTGATTTA+TGG + chr6.3:83370658-83370677 MS.gene75041:CDS 45.0%
!!! GTTCTGGTTCACCGGTTTTT+GGG + chr6.3:83370571-83370590 MS.gene75041:CDS 45.0%
AGCAGAGTCCATCTTCCTCT+CGG + chr6.3:83370352-83370371 MS.gene75041:CDS 50.0%
CAACGGTTCATGTTCCTCCT+TGG + chr6.3:83369743-83369762 MS.gene75041:CDS 50.0%
CAAGGAGGAACATGAACCGT+TGG - chr6.3:83369745-83369764 None:intergenic 50.0%
CACGTGGAAGATCACATGAC+TGG + chr6.3:83370070-83370089 MS.gene75041:CDS 50.0%
CGGTTCTCCGTTACGACAAA+TGG + chr6.3:83370401-83370420 MS.gene75041:CDS 50.0%
CGTACTCAGCCGTGTAAAGA+CGG + chr6.3:83370264-83370283 MS.gene75041:CDS 50.0%
CGTCTTTACACGGCTGAGTA+CGG - chr6.3:83370266-83370285 None:intergenic 50.0%
GGAGAACCGTCATACGAATC+TGG - chr6.3:83370390-83370409 None:intergenic 50.0%
GGTGAACCAGAACCGAAAAC+CGG - chr6.3:83370564-83370583 None:intergenic 50.0%
GTCACCATCTCATTCGCCAT+CGG - chr6.3:83370471-83370490 None:intergenic 50.0%
TCACAAACCCACCCAACATC+AGG - chr6.3:83370834-83370853 None:intergenic 50.0%
TCATTCGCCATCGGTGACAT+CGG - chr6.3:83370462-83370481 None:intergenic 50.0%
TCCACCGGTGATTACTCTTC+CGG + chr6.3:83369877-83369896 MS.gene75041:CDS 50.0%
TGGAGAGTTAACACTCCGAG+AGG - chr6.3:83370370-83370389 None:intergenic 50.0%
! CAGCTGGTTCCGTCTTTACA+CGG - chr6.3:83370276-83370295 None:intergenic 50.0%
! TCATCATGATTCGGCCAAGG+AGG - chr6.3:83369760-83369779 None:intergenic 50.0%
! TGGGAATTCGGGTTTGGGTT+TGG + chr6.3:83370791-83370810 MS.gene75041:CDS 50.0%
! TTCGGGTTTGGGTTTGGATG+CGG + chr6.3:83370797-83370816 MS.gene75041:CDS 50.0%
! TTTAGAATCTCCGGCATCGG+CGG + chr6.3:83369972-83369991 MS.gene75041:CDS 50.0%
!!! CGCATGGTGTTTTCGAGTGT+TGG + chr6.3:83370223-83370242 MS.gene75041:CDS 50.0%
!!! GGTTCTGGTTCACCGGTTTT+TGG + chr6.3:83370570-83370589 MS.gene75041:CDS 50.0%
!!! GGTTTTCGGTTCTGGTTCAC+CGG + chr6.3:83370563-83370582 MS.gene75041:CDS 50.0%
AACAATGCCGGCGATCTCAC+CGG + chr6.3:83369826-83369845 MS.gene75041:CDS 55.0%
AACCCACCCAACATCAGGAC+CGG - chr6.3:83370829-83370848 None:intergenic 55.0%
ACCGGAAGAGTAATCACCGG+TGG - chr6.3:83369881-83369900 None:intergenic 55.0%
ACGTTAAGACGGAGCTGCTC+CGG - chr6.3:83370330-83370349 None:intergenic 55.0%
CGAAGCGGTGACCCAAAAAC+CGG - chr6.3:83370585-83370604 None:intergenic 55.0%
CTGCAAGTGCTTCTCGGAGA+TGG - chr6.3:83369909-83369928 None:intergenic 55.0%
GAAACTTCCTCGGATCACGG+CGG - chr6.3:83370134-83370153 None:intergenic 55.0%
GAGCGAAGAAGCAAACACGG+CGG - chr6.3:83370302-83370321 None:intergenic 55.0%
GAGTGTCCATACGCACATCC+CGG + chr6.3:83370096-83370115 MS.gene75041:CDS 55.0%
GTCAACCCGGTCCTGATGTT+GGG + chr6.3:83370820-83370839 MS.gene75041:CDS 55.0%
GTCACCGATGGCGAATGAGA+TGG + chr6.3:83370464-83370483 MS.gene75041:CDS 55.0%
TTGCTTCTTCGCTCACACGC+CGG + chr6.3:83370308-83370327 MS.gene75041:CDS 55.0%
! TCGGGTTTGGGTTTGGATGC+GGG + chr6.3:83370798-83370817 MS.gene75041:CDS 55.0%
!! GAAGCGCTGCAAGTGCTTCT+CGG - chr6.3:83369915-83369934 None:intergenic 55.0%
!!! CGGTTTTTGGGTCACCGCTT+CGG + chr6.3:83370583-83370602 MS.gene75041:CDS 55.0%
!!! GGTTCACCGGTTTTCGGTTC+TGG + chr6.3:83370555-83370574 MS.gene75041:CDS 55.0%
AAACCGGGTTTAGGCCGGGT+TGG + chr6.3:83370642-83370661 MS.gene75041:CDS 60.0%
AACCCGGTCCTGATGTTGGG+TGG + chr6.3:83370823-83370842 MS.gene75041:CDS 60.0%
ACCCACCCAACATCAGGACC+GGG - chr6.3:83370828-83370847 None:intergenic 60.0%
ACCCGGTCCTGATGTTGGGT+GGG + chr6.3:83370824-83370843 MS.gene75041:CDS 60.0%
ATCGGCGGCGAAGGAGATTC+TGG - chr6.3:83370444-83370463 None:intergenic 60.0%
GGCTGAGTACGGTAACGAGC+AGG - chr6.3:83370255-83370274 None:intergenic 60.0%
GGTAGTGTAATCTCCGGCGC+CGG - chr6.3:83369848-83369867 None:intergenic 60.0%
GGTCAACCCGGTCCTGATGT+TGG + chr6.3:83370819-83370838 MS.gene75041:CDS 60.0%
GGTTTGGATGCGGGTCAACC+CGG + chr6.3:83370807-83370826 MS.gene75041:CDS 60.0%
TTCGCCATCGGTGACATCGG+CGG - chr6.3:83370459-83370478 None:intergenic 60.0%
TTCTCGCCGGGATGTGCGTA+TGG - chr6.3:83370105-83370124 None:intergenic 60.0%
TTTGGGTCACCGCTTCGGTC+CGG + chr6.3:83370588-83370607 MS.gene75041:CDS 60.0%
! GGCGCCGGAGATTACACTAC+CGG + chr6.3:83369847-83369866 MS.gene75041:CDS 60.0%
ATCGGTGACATCGGCGGCGA+AGG - chr6.3:83370453-83370472 None:intergenic 65.0%
CCACCAACCCGGCCTAAACC+CGG - chr6.3:83370648-83370667 None:intergenic 65.0%
GACGCGTGTGAACACGCGCA+TGG + chr6.3:83370207-83370226 MS.gene75041:CDS 65.0%
GGCGGCGAAGGAGATTCTGG+TGG - chr6.3:83370441-83370460 None:intergenic 65.0%
TTCGCCGCCGATGTCACCGA+TGG + chr6.3:83370452-83370471 MS.gene75041:CDS 65.0%
!! AGAATCTCCGGCATCGGCGG+CGG + chr6.3:83369975-83369994 MS.gene75041:CDS 65.0%
!! CGGGTTTAGGCCGGGTTGGT+GGG + chr6.3:83370646-83370665 MS.gene75041:CDS 65.0%
AAGCACGCCGCCGTGATCCG+AGG + chr6.3:83370124-83370143 MS.gene75041:CDS 70.0%
ACGGCGGCGTGCTTTCTCGC+CGG - chr6.3:83370118-83370137 None:intergenic 70.0%
GCAAACACGGCGGCGACAGC+TGG - chr6.3:83370292-83370311 None:intergenic 70.0%
! CCGGGTTTAGGCCGGGTTGG+TGG + chr6.3:83370645-83370664 MS.gene75041:CDS 70.0%
CGGCGGCGTGCTTTCTCGCC+GGG - chr6.3:83370117-83370136 None:intergenic 75.0%
! GGCGGCGGCGGATTCTACGG+TGG + chr6.3:83369993-83370012 MS.gene75041:CDS 75.0%
! GGCGGCGGCGGCGGATTCTA+CGG + chr6.3:83369990-83370009 MS.gene75041:CDS 75.0%
!! ATCTCCGGCATCGGCGGCGG+CGG + chr6.3:83369978-83369997 MS.gene75041:CDS 75.0%
!! TCCGGCGCCGGTGAGATCGC+CGG - chr6.3:83369836-83369855 None:intergenic 75.0%
! GCCGGCGATCTCACCGGCGC+CGG + chr6.3:83369832-83369851 MS.gene75041:CDS 80.0%
! TCCGCCGCCGCCGCCGATGC+CGG - chr6.3:83369985-83370004 None:intergenic 85.0%
!!! TCCGGCATCGGCGGCGGCGG+CGG + chr6.3:83369981-83370000 MS.gene75041:CDS 85.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 83369724 83370866 83369724 ID=MS.gene75041
chr6.3 mRNA 83369724 83370866 83369724 ID=MS.gene75041.t1;Parent=MS.gene75041
chr6.3 exon 83369724 83370866 83369724 ID=MS.gene75041.t1.exon1;Parent=MS.gene75041.t1
chr6.3 CDS 83369724 83370866 83369724 ID=cds.MS.gene75041.t1;Parent=MS.gene75041.t1
Gene Sequence

>MS.gene75041

ATGATGCTGAGAGCTAATCCAACGGTTCATGTTCCTCCTTGGCCGAATCATGATGATCAAACGGCTGAGATTCTTTCTTCTTATTTTGGTTACGATAACAATAACAATGCCGGCGATCTCACCGGCGCCGGAGATTACACTACCGGAGATTTTTCCACCGGTGATTACTCTTCCGGTGATTACCATCTCCGAGAAGCACTTGCAGCGCTTCAACGTTATCTTCCGTCAAACGAGTTCAACGATTCTGATTTAGAATCTCCGGCATCGGCGGCGGCGGCGGATTCTACGGTGGATGCATATTCATGCGATCATTTCCGCATGTACGAGTTCAAGATAAGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCATACGCACATCCCGGCGAGAAAGCACGCCGCCGTGATCCGAGGAAGTTTCATTACTCCGGTACGGCTTGTCCTGATTTTCGTAAAGGAAACTGTAAGAAAGGTGACGCGTGTGAACACGCGCATGGTGTTTTCGAGTGTTGGCTTCATCCTGCTCGTTACCGTACTCAGCCGTGTAAAGACGGAACCAGCTGTCGCCGCCGTGTTTGCTTCTTCGCTCACACGCCGGAGCAGCTCCGTCTTAACGTTCAGCAGAGTCCATCTTCCTCTCGGAGTGTTAACTCTCCAGATTCGTATGACGGTTCTCCGTTACGACAAATGGTTACTATAACGACGCCACCAGAATCTCCTTCGCCGCCGATGTCACCGATGGCGAATGAGATGGTGACGTCGTTTCGTAATTTACAATTGGGGAGGATGAAAACTATGCCAATTAATAGGAATGTTACTATTGGTTCACCGGTTTTCGGTTCTGGTTCACCGGTTTTTGGGTCACCGCTTCGGTCCGGTTTTTTAAGTTTGCCCAATACCCCAACTAAAAAACCGGGTTTAGGCCGGGTTGGTGGGTTTGATTTATGGGATCAGAGTTGTGAAGAGGAGCCTATAATGGAGAGAGTTGAAAGTGGAAGAGATATTAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAAAATTCATTGGAGAATGAGAATGGGAATTCGGGTTTGGGTTTGGATGCGGGTCAACCCGGTCCTGATGTTGGGTGGGTTTGTGATTTGTTGAAGTGA
Protein sequence

>MS.gene75041.t1

MMLRANPTVHVPPWPNHDDQTAEILSSYFGYDNNNNAGDLTGAGDYTTGDFSTGDYSSGDYHLREALAALQRYLPSNEFNDSDLESPASAAAADSTVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEHAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLNVQQSPSSSRSVNSPDSYDGSPLRQMVTITTPPESPSPPMSPMANEMVTSFRNLQLGRMKTMPINRNVTIGSPVFGSGSPVFGSPLRSGFLSLPNTPTKKPGLGRVGGFDLWDQSCEEEPIMERVESGRDIRAKMFEKLSKENSLENENGNSGLGLDAGQPGPDVGWVCDLLK