Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75043.t1 | XP_013453206.1 | 77.9 | 249 | 7 | 1 | 1 | 201 | 1 | 249 | 8.70E-101 | 376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75043.t1 | Q9FG68 | 45.7 | 116 | 15 | 1 | 1 | 68 | 1 | 116 | 1.3e-20 | 101.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75043.t1 | A0A072UBN7 | 77.9 | 249 | 7 | 1 | 1 | 201 | 1 | 249 | 6.3e-101 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene75043.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75043.t1 | MTR_6g090405 | 77.912 | 249 | 7 | 1 | 1 | 201 | 1 | 249 | 3.01e-122 | 346 |
| MS.gene75043.t1 | MTR_4g057635 | 46.218 | 119 | 16 | 1 | 1 | 71 | 1 | 119 | 9.57e-26 | 101 |
| MS.gene75043.t1 | MTR_3g103570 | 36.905 | 168 | 47 | 3 | 1 | 110 | 1 | 167 | 4.92e-25 | 100 |
| MS.gene75043.t1 | MTR_1g017000 | 43.333 | 120 | 20 | 1 | 1 | 72 | 1 | 120 | 2.04e-24 | 96.7 |
| MS.gene75043.t1 | MTR_5g014990 | 42.857 | 119 | 20 | 1 | 1 | 71 | 1 | 119 | 2.93e-24 | 97.4 |
| MS.gene75043.t1 | MTR_1g017140 | 36.158 | 177 | 51 | 3 | 1 | 115 | 1 | 177 | 7.21e-24 | 97.1 |
| MS.gene75043.t1 | MTR_7g102110 | 40.000 | 125 | 27 | 1 | 1 | 77 | 1 | 125 | 1.08e-22 | 92.4 |
| MS.gene75043.t1 | MTR_2g095520 | 43.243 | 111 | 15 | 1 | 1 | 63 | 1 | 111 | 1.17e-21 | 90.5 |
| MS.gene75043.t1 | MTR_4g097570 | 42.727 | 110 | 15 | 1 | 1 | 62 | 1 | 110 | 1.19e-20 | 87.4 |
| MS.gene75043.t1 | MTR_4g097570 | 42.342 | 111 | 15 | 1 | 1 | 62 | 1 | 111 | 1.55e-20 | 87.0 |
| MS.gene75043.t1 | MTR_4g128670 | 42.342 | 111 | 16 | 1 | 1 | 63 | 1 | 111 | 1.82e-20 | 87.8 |
| MS.gene75043.t1 | MTR_1g076150 | 36.552 | 145 | 43 | 2 | 1 | 97 | 1 | 144 | 6.50e-19 | 82.0 |
| MS.gene75043.t1 | MTR_7g076740 | 37.069 | 116 | 25 | 1 | 1 | 68 | 1 | 116 | 1.04e-18 | 82.4 |
| MS.gene75043.t1 | MTR_7g010210 | 37.879 | 132 | 31 | 3 | 1 | 84 | 1 | 129 | 4.51e-17 | 78.2 |
| MS.gene75043.t1 | MTR_7g010210 | 37.879 | 132 | 31 | 3 | 1 | 84 | 1 | 129 | 5.77e-17 | 77.0 |
| MS.gene75043.t1 | MTR_8g031360 | 35.294 | 119 | 28 | 2 | 1 | 70 | 1 | 119 | 1.10e-16 | 76.6 |
| MS.gene75043.t1 | MTR_0140s0030 | 36.719 | 128 | 32 | 3 | 1 | 80 | 2 | 128 | 1.62e-16 | 76.6 |
| MS.gene75043.t1 | MTR_0489s0020 | 36.719 | 128 | 32 | 3 | 1 | 80 | 2 | 128 | 1.62e-16 | 76.6 |
| MS.gene75043.t1 | MTR_4g478180 | 32.099 | 162 | 54 | 4 | 1 | 114 | 2 | 155 | 5.82e-16 | 75.1 |
| MS.gene75043.t1 | MTR_2g089620 | 34.746 | 118 | 28 | 2 | 1 | 70 | 1 | 117 | 7.46e-16 | 74.7 |
| MS.gene75043.t1 | MTR_7g115650 | 31.098 | 164 | 62 | 3 | 1 | 114 | 1 | 163 | 1.59e-15 | 72.0 |
| MS.gene75043.t1 | MTR_7g011170 | 35.345 | 116 | 26 | 2 | 1 | 68 | 1 | 115 | 3.14e-15 | 72.8 |
| MS.gene75043.t1 | MTR_4g082230 | 36.207 | 116 | 25 | 2 | 1 | 68 | 1 | 115 | 3.80e-15 | 73.2 |
| MS.gene75043.t1 | MTR_4g082290 | 36.207 | 116 | 25 | 2 | 1 | 68 | 1 | 115 | 5.70e-15 | 72.8 |
| MS.gene75043.t1 | MTR_7g087130 | 37.931 | 116 | 23 | 3 | 1 | 68 | 1 | 115 | 7.66e-15 | 72.0 |
| MS.gene75043.t1 | MTR_2g034790 | 35.345 | 116 | 26 | 2 | 1 | 68 | 1 | 115 | 7.99e-15 | 72.0 |
| MS.gene75043.t1 | MTR_7g109320 | 25.806 | 217 | 87 | 5 | 1 | 156 | 1 | 204 | 8.30e-15 | 72.0 |
| MS.gene75043.t1 | MTR_4g121460 | 35.345 | 116 | 26 | 2 | 1 | 68 | 1 | 115 | 1.06e-14 | 71.6 |
| MS.gene75043.t1 | MTR_4g091490 | 34.454 | 119 | 28 | 3 | 1 | 70 | 1 | 118 | 1.23e-14 | 71.6 |
| MS.gene75043.t1 | MTR_1g043050 | 33.898 | 118 | 29 | 2 | 1 | 70 | 1 | 117 | 3.23e-14 | 69.3 |
| MS.gene75043.t1 | MTR_1g043080 | 33.898 | 118 | 29 | 2 | 1 | 70 | 1 | 117 | 3.81e-14 | 69.3 |
| MS.gene75043.t1 | MTR_6g012690 | 34.483 | 116 | 27 | 2 | 1 | 68 | 1 | 115 | 1.07e-13 | 68.9 |
| MS.gene75043.t1 | MTR_6g012180 | 37.838 | 111 | 20 | 3 | 1 | 63 | 1 | 110 | 4.80e-13 | 66.6 |
| MS.gene75043.t1 | MTR_2g067420 | 34.545 | 110 | 23 | 2 | 2 | 63 | 4 | 112 | 8.52e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75043.t1 | AT5G23000 | 44.915 | 118 | 17 | 1 | 1 | 70 | 1 | 118 | 2.35e-25 | 100 |
| MS.gene75043.t1 | AT2G36890 | 43.697 | 119 | 19 | 1 | 1 | 71 | 1 | 119 | 1.46e-23 | 95.5 |
| MS.gene75043.t1 | AT2G36890 | 43.697 | 119 | 19 | 1 | 1 | 71 | 42 | 160 | 1.71e-23 | 95.9 |
| MS.gene75043.t1 | AT3G49690 | 42.373 | 118 | 20 | 1 | 1 | 70 | 1 | 118 | 2.59e-23 | 95.1 |
| MS.gene75043.t1 | AT4G37780 | 40.336 | 119 | 23 | 1 | 1 | 71 | 1 | 119 | 7.59e-23 | 93.6 |
| MS.gene75043.t1 | AT5G65790 | 42.373 | 118 | 20 | 1 | 1 | 70 | 1 | 118 | 9.00e-23 | 94.4 |
| MS.gene75043.t1 | AT5G57620 | 42.857 | 119 | 20 | 1 | 1 | 71 | 1 | 119 | 1.10e-22 | 93.6 |
| MS.gene75043.t1 | AT3G47600 | 36.667 | 150 | 38 | 4 | 1 | 94 | 1 | 149 | 9.80e-18 | 80.1 |
| MS.gene75043.t1 | AT5G62470 | 38.194 | 144 | 39 | 4 | 1 | 95 | 1 | 143 | 1.44e-17 | 79.7 |
| MS.gene75043.t1 | AT5G62470 | 37.931 | 145 | 39 | 4 | 1 | 95 | 1 | 144 | 2.09e-17 | 79.3 |
| MS.gene75043.t1 | AT4G28110 | 36.441 | 118 | 26 | 2 | 1 | 70 | 1 | 117 | 3.01e-17 | 78.2 |
| MS.gene75043.t1 | AT5G49330 | 33.813 | 139 | 32 | 3 | 1 | 91 | 1 | 127 | 2.10e-16 | 76.6 |
| MS.gene75043.t1 | AT3G61250 | 35.294 | 119 | 28 | 2 | 1 | 71 | 1 | 118 | 2.23e-16 | 75.9 |
| MS.gene75043.t1 | AT5G16770 | 27.778 | 234 | 109 | 6 | 1 | 186 | 1 | 222 | 5.75e-16 | 75.1 |
| MS.gene75043.t1 | AT5G16770 | 27.778 | 234 | 109 | 6 | 1 | 186 | 1 | 222 | 5.75e-16 | 75.1 |
| MS.gene75043.t1 | AT1G79180 | 37.097 | 124 | 29 | 2 | 2 | 77 | 4 | 126 | 5.92e-16 | 74.7 |
| MS.gene75043.t1 | AT3G01140 | 29.508 | 183 | 74 | 4 | 1 | 132 | 1 | 179 | 6.94e-16 | 75.1 |
| MS.gene75043.t1 | AT1G08810 | 39.655 | 116 | 21 | 3 | 1 | 68 | 1 | 115 | 6.98e-16 | 74.3 |
| MS.gene75043.t1 | AT1G74650 | 38.983 | 118 | 23 | 3 | 1 | 70 | 1 | 117 | 7.58e-16 | 74.7 |
| MS.gene75043.t1 | AT5G16770 | 31.210 | 157 | 52 | 4 | 1 | 109 | 1 | 149 | 1.02e-15 | 74.3 |
| MS.gene75043.t1 | AT5G16770 | 31.210 | 157 | 52 | 4 | 1 | 109 | 1 | 149 | 1.02e-15 | 74.3 |
| MS.gene75043.t1 | AT4G17785 | 37.815 | 119 | 24 | 3 | 1 | 70 | 1 | 118 | 1.10e-15 | 74.7 |
| MS.gene75043.t1 | AT4G17785 | 37.815 | 119 | 24 | 3 | 1 | 70 | 1 | 118 | 1.20e-15 | 74.3 |
| MS.gene75043.t1 | AT5G15310 | 36.441 | 118 | 26 | 2 | 1 | 70 | 1 | 117 | 1.43e-15 | 73.9 |
| MS.gene75043.t1 | AT1G16490 | 37.391 | 115 | 23 | 2 | 2 | 68 | 4 | 117 | 1.51e-15 | 73.6 |
| MS.gene75043.t1 | AT5G15310 | 36.441 | 118 | 26 | 2 | 1 | 70 | 1 | 117 | 1.57e-15 | 72.8 |
| MS.gene75043.t1 | AT5G15310 | 36.441 | 118 | 26 | 2 | 1 | 70 | 1 | 117 | 1.88e-15 | 73.6 |
| MS.gene75043.t1 | AT2G31180 | 33.562 | 146 | 46 | 3 | 1 | 96 | 1 | 145 | 2.11e-15 | 72.8 |
| MS.gene75043.t1 | AT4G21440 | 33.898 | 118 | 29 | 2 | 1 | 70 | 1 | 117 | 3.22e-15 | 73.2 |
| MS.gene75043.t1 | AT2G47460 | 36.207 | 116 | 25 | 2 | 1 | 68 | 1 | 115 | 4.67e-15 | 72.8 |
| MS.gene75043.t1 | AT3G12820 | 37.069 | 116 | 24 | 2 | 3 | 70 | 5 | 119 | 6.78e-15 | 71.2 |
| MS.gene75043.t1 | AT1G56160 | 36.232 | 138 | 38 | 3 | 2 | 91 | 4 | 139 | 6.79e-15 | 72.0 |
| MS.gene75043.t1 | AT3G23250 | 35.345 | 116 | 26 | 2 | 1 | 68 | 1 | 115 | 9.25e-15 | 71.2 |
| MS.gene75043.t1 | AT3G02940 | 32.203 | 118 | 31 | 2 | 1 | 70 | 1 | 117 | 9.58e-15 | 71.6 |
| MS.gene75043.t1 | AT3G02940 | 32.203 | 118 | 31 | 2 | 1 | 70 | 1 | 117 | 1.24e-14 | 71.2 |
| MS.gene75043.t1 | AT3G02940 | 32.203 | 118 | 31 | 2 | 1 | 70 | 1 | 117 | 1.24e-14 | 71.2 |
| MS.gene75043.t1 | AT3G62610 | 34.483 | 116 | 27 | 2 | 1 | 68 | 1 | 115 | 2.30e-13 | 67.8 |
| MS.gene75043.t1 | AT1G79180 | 60.417 | 48 | 18 | 1 | 2 | 49 | 4 | 50 | 4.31e-11 | 61.2 |
Find 22 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTCCTTTACCAATTAAAA+TGG | 0.194308 | 6.3:+83395762 | MS.gene75043:CDS |
| GGTAAAGGAATATTATTAAT+TGG | 0.215694 | 6.3:-83395751 | None:intergenic |
| AAACACTACATTCAAGAAAA+TGG | 0.276016 | 6.3:+83394436 | MS.gene75043:CDS |
| AAAATGGCAATGCTGGTAAT+TGG | 0.287812 | 6.3:+83394452 | MS.gene75043:CDS |
| ACGTCATTATCTGTTCTTCC+TGG | 0.361137 | 6.3:-83395514 | None:intergenic |
| ATTCAAGAAAATGGCAATGC+TGG | 0.460522 | 6.3:+83394445 | MS.gene75043:CDS |
| GAGTCAAAACAAGGTGTGTT+CGG | 0.461549 | 6.3:-83395700 | None:intergenic |
| CAAGAAGAATTGCATCATCA+TGG | 0.503609 | 6.3:-83395921 | None:intergenic |
| CTTGAAATTTCCTTGGTGGT+TGG | 0.519356 | 6.3:-83395838 | None:intergenic |
| ACAAAGGGTGCTTCAAGTTG+AGG | 0.523660 | 6.3:-83395664 | None:intergenic |
| AAAACTTGAAATTTCCTTGG+TGG | 0.524064 | 6.3:-83395842 | None:intergenic |
| GACAAATCAAAAGTGAAAAG+AGG | 0.524219 | 6.3:+83394382 | MS.gene75043:CDS |
| AAGTCAAAGTACTTGAAAAG+TGG | 0.535857 | 6.3:-83395636 | None:intergenic |
| ATCTCTCTTCCCCTAAAAGC+AGG | 0.549254 | 6.3:+83394475 | MS.gene75043:CDS |
| TTTATAGCAGCACAATTACC+AGG | 0.551768 | 6.3:+83395496 | MS.gene75043:intron |
| AATAATTAAGGTCATGGGAA+GGG | 0.568392 | 6.3:+83394348 | None:intergenic |
| AGTGTAAATATTGTTGTCTG+TGG | 0.589563 | 6.3:-83395590 | None:intergenic |
| AAATAATTAAGGTCATGGGA+AGG | 0.599808 | 6.3:+83394347 | None:intergenic |
| CAAAAGTGAAAAGAGGTCCA+TGG | 0.611543 | 6.3:+83394389 | MS.gene75043:CDS |
| TCATCTTCTTCATTAGACCA+TGG | 0.627345 | 6.3:-83394406 | None:intergenic |
| AATTTGTAGGAGTCAAAACA+AGG | 0.676985 | 6.3:-83395709 | None:intergenic |
| TAGTACTACACCAACCACCA+AGG | 0.700097 | 6.3:+83395828 | MS.gene75043:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTATGTTTAATTTG+TGG | + | chr6.3:83394872-83394891 | MS.gene75043:intron | 10.0% |
| !! | AATGAAAGATATATAAATCA+AGG | - | chr6.3:83394523-83394542 | None:intergenic | 15.0% |
| !! | ATGAAAGATATATAAATCAA+GGG | - | chr6.3:83394522-83394541 | None:intergenic | 15.0% |
| !!! | ATATTTATTTTTTTGTCATC+AGG | + | chr6.3:83395467-83395486 | MS.gene75043:intron | 15.0% |
| !!! | ATGTTTTTTTTTTCTTTCAA+TGG | + | chr6.3:83394703-83394722 | MS.gene75043:intron | 15.0% |
| !!! | CATAATATTGATTTCAAATA+AGG | - | chr6.3:83394835-83394854 | None:intergenic | 15.0% |
| !!! | TAATTTGTGGTATTTTTTTT+AGG | + | chr6.3:83394885-83394904 | MS.gene75043:intron | 15.0% |
| !! | AAAGAAACTATAGAAATGAA+AGG | - | chr6.3:83395046-83395065 | None:intergenic | 20.0% |
| !! | CAAAATCATACAATATAATG+AGG | + | chr6.3:83395097-83395116 | MS.gene75043:intron | 20.0% |
| !! | CATACTTAACACAATAAATA+AGG | - | chr6.3:83395218-83395237 | None:intergenic | 20.0% |
| !! | CTTATAGAAAGTTTCATTTA+AGG | + | chr6.3:83394672-83394691 | MS.gene75043:intron | 20.0% |
| !! | GAAACTTTCTATAAGAATTA+GGG | - | chr6.3:83394667-83394686 | None:intergenic | 20.0% |
| !! | GGTAAAGGAATATTATTAAT+TGG | - | chr6.3:83395754-83395773 | None:intergenic | 20.0% |
| !! | TATTCCTTTACCAATTAAAA+TGG | + | chr6.3:83395762-83395781 | MS.gene75043:CDS | 20.0% |
| !! | TGAAACTTTCTATAAGAATT+AGG | - | chr6.3:83394668-83394687 | None:intergenic | 20.0% |
| !! | TGAAAGATATATAAATCAAG+GGG | - | chr6.3:83394521-83394540 | None:intergenic | 20.0% |
| !!! | ATCAAATCTAAAATCTAAGA+TGG | + | chr6.3:83394610-83394629 | MS.gene75043:intron | 20.0% |
| !!! | TTATGTCTTTGACTAATTTT+AGG | - | chr6.3:83395370-83395389 | None:intergenic | 20.0% |
| ! | AAAATGTGTATGCATACATA+TGG | - | chr6.3:83395072-83395091 | None:intergenic | 25.0% |
| ! | AAACACTACATTCAAGAAAA+TGG | + | chr6.3:83394436-83394455 | MS.gene75043:CDS | 25.0% |
| ! | ACAATTGTGATTAGATACTA+CGG | - | chr6.3:83395306-83395325 | None:intergenic | 25.0% |
| ! | ATAGAAAGTTTCATTTAAGG+AGG | + | chr6.3:83394675-83394694 | MS.gene75043:intron | 25.0% |
| ! | TAAGATGGTTGAACTATTTA+AGG | + | chr6.3:83394937-83394956 | MS.gene75043:intron | 25.0% |
| ! | TGAAAAACTTGAAATTTCCT+TGG | - | chr6.3:83395848-83395867 | None:intergenic | 25.0% |
| ! | TTGCAAATCCAAAAATTTGT+AGG | - | chr6.3:83395725-83395744 | None:intergenic | 25.0% |
| !! | CTAAAATCTAAGATGGTATA+TGG | + | chr6.3:83394617-83394636 | MS.gene75043:intron | 25.0% |
| !! | GTTTTTCTATTATTCAAGCT+TGG | - | chr6.3:83395340-83395359 | None:intergenic | 25.0% |
| !!! | GATTCCATTTTAATTGGTAA+AGG | - | chr6.3:83395769-83395788 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTGTCATCAGG+TGG | + | chr6.3:83395470-83395489 | MS.gene75043:intron | 25.0% |
| !!! | TTTTGACTCCTACAAATTTT+TGG | + | chr6.3:83395714-83395733 | MS.gene75043:CDS | 25.0% |
| AAAACTTGAAATTTCCTTGG+TGG | - | chr6.3:83395845-83395864 | None:intergenic | 30.0% | |
| AATTTGTAGGAGTCAAAACA+AGG | - | chr6.3:83395712-83395731 | None:intergenic | 30.0% | |
| AGTGTAAATATTGTTGTCTG+TGG | - | chr6.3:83395593-83395612 | None:intergenic | 30.0% | |
| ATAATGACGTGAAAAATCAC+TGG | + | chr6.3:83395527-83395546 | MS.gene75043:CDS | 30.0% | |
| GACAAATCAAAAGTGAAAAG+AGG | + | chr6.3:83394382-83394401 | MS.gene75043:CDS | 30.0% | |
| TAAACAAAATTAGCCGAACT+CGG | + | chr6.3:83395387-83395406 | MS.gene75043:intron | 30.0% | |
| ! | AAGTCAAAGTACTTGAAAAG+TGG | - | chr6.3:83395639-83395658 | None:intergenic | 30.0% |
| ! | CAGATCACTCATAGTTTTTA+AGG | + | chr6.3:83395262-83395281 | MS.gene75043:intron | 30.0% |
| ! | CTAAAGAAAAAGTATGTAGC+AGG | + | chr6.3:83395559-83395578 | MS.gene75043:CDS | 30.0% |
| ! | GGTTTTTGATCAAAGACAAA+GGG | - | chr6.3:83395682-83395701 | None:intergenic | 30.0% |
| !! | ATGAAAAATCACCTGCTTTT+AGG | - | chr6.3:83394489-83394508 | None:intergenic | 30.0% |
| !! | GCTTCTGATTCCATTTTAAT+TGG | - | chr6.3:83395775-83395794 | None:intergenic | 30.0% |
| !! | TGAAAAATCACCTGCTTTTA+GGG | - | chr6.3:83394488-83394507 | None:intergenic | 30.0% |
| !! | TTTTAGGTCTAAATCGTTGT+GGG | + | chr6.3:83394901-83394920 | MS.gene75043:intron | 30.0% |
| !!! | ACTTTTGATTTGTCACAACA+TGG | - | chr6.3:83394376-83394395 | None:intergenic | 30.0% |
| !!! | TTTTTAGGTCTAAATCGTTG+TGG | + | chr6.3:83394900-83394919 | MS.gene75043:intron | 30.0% |
| AAAATGGCAATGCTGGTAAT+TGG | + | chr6.3:83394452-83394471 | MS.gene75043:CDS | 35.0% | |
| AAACCTCCAAGCTTGATATT+AGG | - | chr6.3:83394963-83394982 | None:intergenic | 35.0% | |
| ATTCAAGAAAATGGCAATGC+TGG | + | chr6.3:83394445-83394464 | MS.gene75043:CDS | 35.0% | |
| CAAGAAGAATTGCATCATCA+TGG | - | chr6.3:83395924-83395943 | None:intergenic | 35.0% | |
| TCATCTTCTTCATTAGACCA+TGG | - | chr6.3:83394409-83394428 | None:intergenic | 35.0% | |
| TTAAGGCCTAATATCAAGCT+TGG | + | chr6.3:83394954-83394973 | MS.gene75043:intron | 35.0% | |
| TTTATAGCAGCACAATTACC+AGG | + | chr6.3:83395496-83395515 | MS.gene75043:intron | 35.0% | |
| ! | CGGTTTTTGATCAAAGACAA+AGG | - | chr6.3:83395683-83395702 | None:intergenic | 35.0% |
| ! | GAATCAGAAGCTTTTTACAC+TGG | + | chr6.3:83395784-83395803 | MS.gene75043:CDS | 35.0% |
| ! | TGGTAATTGTGCTGCTATAA+AGG | - | chr6.3:83395497-83395516 | None:intergenic | 35.0% |
| !! | GAAAAATCACCTGCTTTTAG+GGG | - | chr6.3:83394487-83394506 | None:intergenic | 35.0% |
| ACGTCATTATCTGTTCTTCC+TGG | - | chr6.3:83395517-83395536 | None:intergenic | 40.0% | |
| CAAAAGTGAAAAGAGGTCCA+TGG | + | chr6.3:83394389-83394408 | MS.gene75043:CDS | 40.0% | |
| GAGTCAAAACAAGGTGTGTT+CGG | - | chr6.3:83395703-83395722 | None:intergenic | 40.0% | |
| GATAATGTTGTCTTCCTCCT+TGG | - | chr6.3:83394988-83395007 | None:intergenic | 40.0% | |
| ! | CTTGAAATTTCCTTGGTGGT+TGG | - | chr6.3:83395841-83395860 | None:intergenic | 40.0% |
| !! | TGCACTCTTTTTAGCACCAT+AGG | + | chr6.3:83395008-83395027 | MS.gene75043:intron | 40.0% |
| !! | TTTTTAGCACCATAGGAAGC+AGG | + | chr6.3:83395015-83395034 | MS.gene75043:intron | 40.0% |
| AGGCCTAATATCAAGCTTGG+AGG | + | chr6.3:83394957-83394976 | MS.gene75043:intron | 45.0% | |
| ATCTCTCTTCCCCTAAAAGC+AGG | + | chr6.3:83394475-83394494 | MS.gene75043:CDS | 45.0% | |
| GGAAGAGTTGTCGTCTAAGA+TGG | + | chr6.3:83394922-83394941 | MS.gene75043:intron | 45.0% | |
| TAGTACTACACCAACCACCA+AGG | + | chr6.3:83395828-83395847 | MS.gene75043:CDS | 45.0% | |
| !! | ACAAAGGGTGCTTCAAGTTG+AGG | - | chr6.3:83395667-83395686 | None:intergenic | 45.0% |
| !! | CAAGATTTGAGCACCGAGTT+CGG | - | chr6.3:83395403-83395422 | None:intergenic | 45.0% |
| AAGGACTTGCCTGCTTCCTA+TGG | - | chr6.3:83395027-83395046 | None:intergenic | 50.0% | |
| CAAGCTTGGAGGTTTCACCA+AGG | + | chr6.3:83394968-83394987 | MS.gene75043:intron | 50.0% | |
| GCTTGGAGGTTTCACCAAGG+AGG | + | chr6.3:83394971-83394990 | MS.gene75043:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 83394361 | 83395972 | 83394361 | ID=MS.gene75043 |
| chr6.3 | mRNA | 83394361 | 83395972 | 83394361 | ID=MS.gene75043.t1;Parent=MS.gene75043 |
| chr6.3 | exon | 83394361 | 83394496 | 83394361 | ID=MS.gene75043.t1.exon1;Parent=MS.gene75043.t1 |
| chr6.3 | CDS | 83394361 | 83394496 | 83394361 | ID=cds.MS.gene75043.t1;Parent=MS.gene75043.t1 |
| chr6.3 | exon | 83395503 | 83395972 | 83395503 | ID=MS.gene75043.t1.exon2;Parent=MS.gene75043.t1 |
| chr6.3 | CDS | 83395503 | 83395972 | 83395503 | ID=cds.MS.gene75043.t1;Parent=MS.gene75043.t1 |
| Gene Sequence |
| Protein sequence |
