Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75406.t1 | RHN80703.1 | 77 | 595 | 98 | 5 | 1 | 560 | 87 | 677 | 2.40E-252 | 881.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75406.t1 | F4K493 | 30.2 | 749 | 318 | 17 | 4 | 559 | 98 | 834 | 8.1e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75406.t1 | A0A072VN36 | 77.0 | 595 | 98 | 5 | 1 | 560 | 100 | 690 | 1.7e-252 | 881.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene75406.t1 | TR | SNF2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75406.t1 | MTR_1g081750 | 76.975 | 595 | 98 | 5 | 1 | 560 | 100 | 690 | 0.0 | 914 |
| MS.gene75406.t1 | MTR_7g026650 | 50.309 | 648 | 224 | 17 | 2 | 559 | 87 | 726 | 0.0 | 558 |
| MS.gene75406.t1 | MTR_3g071860 | 50.207 | 484 | 176 | 11 | 142 | 560 | 356 | 839 | 2.60e-133 | 419 |
| MS.gene75406.t1 | MTR_3g071860 | 66.667 | 150 | 47 | 2 | 1 | 147 | 102 | 251 | 1.25e-55 | 203 |
| MS.gene75406.t1 | MTR_5g083300 | 46.991 | 349 | 145 | 6 | 251 | 559 | 526 | 874 | 7.69e-87 | 293 |
| MS.gene75406.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 104 | 257 | 5.94e-25 | 110 |
| MS.gene75406.t1 | MTR_5g083300 | 46.991 | 349 | 145 | 6 | 251 | 559 | 563 | 911 | 9.78e-87 | 293 |
| MS.gene75406.t1 | MTR_5g083300 | 43.373 | 166 | 75 | 5 | 3 | 161 | 141 | 294 | 5.70e-25 | 110 |
| MS.gene75406.t1 | MTR_7g026620 | 41.523 | 407 | 142 | 13 | 140 | 530 | 11 | 337 | 2.45e-75 | 252 |
| MS.gene75406.t1 | MTR_7g450860 | 33.876 | 307 | 168 | 8 | 272 | 561 | 574 | 862 | 1.70e-42 | 164 |
| MS.gene75406.t1 | MTR_7g029525 | 41.989 | 181 | 103 | 2 | 316 | 495 | 662 | 841 | 3.75e-41 | 160 |
| MS.gene75406.t1 | MTR_7g450780 | 43.085 | 188 | 93 | 5 | 316 | 495 | 667 | 848 | 2.36e-40 | 157 |
| MS.gene75406.t1 | MTR_7g450820 | 41.622 | 185 | 98 | 3 | 316 | 495 | 567 | 746 | 6.02e-40 | 156 |
| MS.gene75406.t1 | MTR_7g050445 | 41.711 | 187 | 97 | 5 | 316 | 495 | 630 | 811 | 1.56e-39 | 155 |
| MS.gene75406.t1 | MTR_4g088650 | 40.761 | 184 | 101 | 3 | 316 | 495 | 578 | 757 | 3.11e-39 | 154 |
| MS.gene75406.t1 | MTR_7g450790 | 40.437 | 183 | 101 | 3 | 317 | 495 | 778 | 956 | 5.43e-38 | 150 |
| MS.gene75406.t1 | MTR_2g437480 | 31.878 | 229 | 126 | 7 | 284 | 506 | 398 | 602 | 2.78e-25 | 111 |
| MS.gene75406.t1 | MTR_8g037345 | 32.474 | 194 | 105 | 6 | 316 | 506 | 282 | 452 | 2.75e-24 | 108 |
| MS.gene75406.t1 | MTR_7g026550 | 32.645 | 242 | 79 | 8 | 298 | 538 | 24 | 182 | 9.80e-22 | 97.8 |
| MS.gene75406.t1 | MTR_3g084600 | 45.455 | 121 | 34 | 3 | 318 | 438 | 16 | 104 | 1.30e-19 | 87.0 |
| MS.gene75406.t1 | MTR_4g032945 | 60.417 | 48 | 19 | 0 | 1 | 48 | 1 | 48 | 4.26e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75406.t1 | AT3G42670 | 41.714 | 350 | 162 | 7 | 251 | 559 | 480 | 828 | 5.41e-75 | 259 |
| MS.gene75406.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 8.42e-19 | 91.3 |
| MS.gene75406.t1 | AT3G42670 | 41.714 | 350 | 162 | 7 | 251 | 559 | 480 | 828 | 5.41e-75 | 259 |
| MS.gene75406.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 8.42e-19 | 91.3 |
| MS.gene75406.t1 | AT3G42670 | 41.714 | 350 | 162 | 7 | 251 | 559 | 480 | 828 | 5.41e-75 | 259 |
| MS.gene75406.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 8.42e-19 | 91.3 |
| MS.gene75406.t1 | AT3G42670 | 41.193 | 352 | 163 | 7 | 251 | 559 | 480 | 830 | 3.90e-74 | 257 |
| MS.gene75406.t1 | AT3G42670 | 41.985 | 131 | 64 | 4 | 3 | 132 | 97 | 216 | 9.04e-19 | 91.3 |
| MS.gene75406.t1 | AT5G20420 | 41.261 | 349 | 164 | 5 | 252 | 559 | 486 | 834 | 1.66e-73 | 255 |
| MS.gene75406.t1 | AT5G20420 | 37.654 | 162 | 88 | 4 | 3 | 163 | 97 | 246 | 4.96e-23 | 104 |
| MS.gene75406.t1 | AT1G05490 | 37.838 | 185 | 103 | 4 | 318 | 495 | 736 | 915 | 5.32e-36 | 144 |
| MS.gene75406.t1 | AT3G24340 | 36.111 | 180 | 111 | 3 | 318 | 495 | 491 | 668 | 6.42e-32 | 132 |
| MS.gene75406.t1 | AT2G16390 | 33.333 | 177 | 98 | 2 | 314 | 490 | 271 | 427 | 1.07e-24 | 109 |
| MS.gene75406.t1 | AT2G16390 | 33.333 | 177 | 98 | 2 | 314 | 490 | 268 | 424 | 1.19e-24 | 109 |
| MS.gene75406.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 314 | 490 | 190 | 346 | 1.42e-21 | 99.8 |
| MS.gene75406.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 314 | 490 | 183 | 339 | 1.42e-21 | 99.8 |
| MS.gene75406.t1 | AT2G21450 | 32.044 | 181 | 95 | 4 | 314 | 490 | 92 | 248 | 1.60e-21 | 99.4 |
Find 86 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGATACCATTAGAATT+TGG | 0.209817 | 5.4:+39455101 | None:intergenic |
| CCAGGTAGAACCATTGATTT+TGG | 0.226511 | 5.4:+39455128 | None:intergenic |
| TTTATCTTCTGTTCTCATTA+AGG | 0.252520 | 5.4:+39454998 | None:intergenic |
| CCACAATCTAGGTTACTTTC+CGG | 0.284693 | 5.4:-39457076 | MS.gene75406:CDS |
| CAAGATTGTGTATGAAGTTA+TGG | 0.284889 | 5.4:-39456975 | MS.gene75406:CDS |
| TATCGATTGGACGAACAAAT+TGG | 0.287276 | 5.4:-39455984 | MS.gene75406:CDS |
| CCAAAGAAAATGACAGTGTT+TGG | 0.290902 | 5.4:-39455490 | MS.gene75406:CDS |
| TAATGGTATCAAGCATGATT+TGG | 0.292292 | 5.4:-39455093 | MS.gene75406:CDS |
| TGTTACCGCGTCATCTTTAA+AGG | 0.296633 | 5.4:-39457026 | MS.gene75406:CDS |
| GGTAGGTGGAAAGGCTAAAA+TGG | 0.309089 | 5.4:-39455616 | MS.gene75406:intron |
| TTGAAGTTCAAAACATTCAT+AGG | 0.322383 | 5.4:+39456929 | None:intergenic |
| TCAACTGATGCTACTAATCT+TGG | 0.333239 | 5.4:-39455524 | MS.gene75406:CDS |
| GAGTGGTCCAAAGGTTAATA+AGG | 0.365464 | 5.4:-39456888 | MS.gene75406:CDS |
| CCTTCTTCATCACATGATAA+TGG | 0.368117 | 5.4:+39456794 | None:intergenic |
| GCTCTTCATTGCCACAATCT+AGG | 0.368231 | 5.4:-39457087 | MS.gene75406:CDS |
| CTGAAGAAGATCCAACTATC+AGG | 0.384028 | 5.4:-39456529 | MS.gene75406:CDS |
| TAGCCCATGACAAGAACAAT+AGG | 0.384093 | 5.4:+39455035 | None:intergenic |
| TTCATAGGACCACTAATATT+AGG | 0.384672 | 5.4:+39456944 | None:intergenic |
| CCGTCTTTCTTCCTGATAGT+TGG | 0.388806 | 5.4:+39456518 | None:intergenic |
| CATGTGTAGAGTGTGGTCTT+TGG | 0.395080 | 5.4:+39455233 | None:intergenic |
| CACAATCTAGGTTACTTTCC+GGG | 0.397509 | 5.4:-39457075 | MS.gene75406:CDS |
| CCTGGAGTTCCAAATTCTAA+TGG | 0.399610 | 5.4:-39455110 | MS.gene75406:CDS |
| TTGGTGTCGTCGAATGTCTC+TGG | 0.405539 | 5.4:+39455147 | None:intergenic |
| AAGAAAGAGGATAATGTGAT+TGG | 0.408479 | 5.4:-39457223 | MS.gene75406:CDS |
| GTCTTTGGAGCTAGGACTAA+TGG | 0.409580 | 5.4:+39455248 | None:intergenic |
| CACCCTATTGTTCTTGTCAT+GGG | 0.413983 | 5.4:-39455038 | MS.gene75406:CDS |
| CAAAGAAAATGACAGTGTTT+GGG | 0.414944 | 5.4:-39455489 | MS.gene75406:CDS |
| AAGAAAAGAGATGGTGAGAA+AGG | 0.416344 | 5.4:+39455304 | None:intergenic |
| AAGATTGTGTATGAAGTTAT+GGG | 0.424794 | 5.4:-39456974 | MS.gene75406:CDS |
| ATCATGTTCACATGTTTCCT+TGG | 0.426716 | 5.4:+39456007 | None:intergenic |
| GGCAATTATCCTAATATTAG+TGG | 0.431684 | 5.4:-39456953 | MS.gene75406:CDS |
| ACACCCTATTGTTCTTGTCA+TGG | 0.436213 | 5.4:-39455039 | MS.gene75406:CDS |
| GATAATGGAGACTCATTGTA+TGG | 0.461722 | 5.4:+39456809 | None:intergenic |
| ATATCTCATGCTCCTGGAGC+TGG | 0.462480 | 5.4:-39455332 | MS.gene75406:CDS |
| GCGGTTCTGTAAGGAGCATA+TGG | 0.471624 | 5.4:-39456723 | MS.gene75406:CDS |
| TATCGATGATCATAAAGAAC+AGG | 0.472137 | 5.4:-39456636 | MS.gene75406:CDS |
| CCATTAGAATTTGGAACTCC+AGG | 0.476634 | 5.4:+39455110 | None:intergenic |
| AGAGTGTGGTCTTTGGAGCT+AGG | 0.489103 | 5.4:+39455240 | None:intergenic |
| GCAGAAGAAAGAAAACGTAT+TGG | 0.496020 | 5.4:-39456490 | MS.gene75406:CDS |
| AATAAGGAAAATCAGTTGAC+TGG | 0.505533 | 5.4:-39456872 | MS.gene75406:CDS |
| ACGAAGAAGGCGGTTCTGTA+AGG | 0.505948 | 5.4:-39456732 | MS.gene75406:CDS |
| AACTTCAAATCCTGTGATGA+TGG | 0.524328 | 5.4:-39456914 | MS.gene75406:CDS |
| TAACAATTTCTGCACGAAGA+AGG | 0.525323 | 5.4:-39456745 | MS.gene75406:CDS |
| TGTGTTATATCTCATGCTCC+TGG | 0.525908 | 5.4:-39455338 | MS.gene75406:CDS |
| GAAACAAAGCAGTGAACATA+CGG | 0.535472 | 5.4:-39455582 | MS.gene75406:CDS |
| TGGATAAGATACACCGGCAT+GGG | 0.541181 | 5.4:+39455182 | None:intergenic |
| ATAGTTGGATCTTCTTCAGA+TGG | 0.543249 | 5.4:+39456533 | None:intergenic |
| TTGGATCTTCTTCAGATGGT+AGG | 0.545112 | 5.4:+39456537 | None:intergenic |
| GGAAGTAATTGATGCTTACA+TGG | 0.555455 | 5.4:-39456573 | MS.gene75406:CDS |
| AGCATCAATTACTTCCTCGC+AGG | 0.555873 | 5.4:+39456580 | None:intergenic |
| CCAAAATCAATGGTTCTACC+TGG | 0.556365 | 5.4:-39455128 | MS.gene75406:CDS |
| ATATCCAATGGTAGGTGGAA+AGG | 0.558302 | 5.4:-39455625 | MS.gene75406:intron |
| GTCTCTGGCTTCGACAGATG+TGG | 0.558594 | 5.4:+39455162 | None:intergenic |
| TTCGACGACACCAAAATCAA+TGG | 0.558930 | 5.4:-39455138 | MS.gene75406:CDS |
| ACCACTCTTACCATCATCAC+AGG | 0.562701 | 5.4:+39456904 | None:intergenic |
| TGACACAAATAAAGAATCCA+AGG | 0.564564 | 5.4:-39456024 | MS.gene75406:CDS |
| AGCCCATGACAAGAACAATA+GGG | 0.568333 | 5.4:+39455036 | None:intergenic |
| GGTTTCATATGTCATAAGAT+CGG | 0.570324 | 5.4:-39457005 | MS.gene75406:CDS |
| CCATTATCATGTGATGAAGA+AGG | 0.574271 | 5.4:-39456794 | MS.gene75406:CDS |
| AAAATGGAATGTTCCCATGC+CGG | 0.580266 | 5.4:-39455195 | MS.gene75406:CDS |
| ATGTGAACATGATTATCGAT+TGG | 0.587514 | 5.4:-39455997 | MS.gene75406:CDS |
| CTTCAACGAAATAACTGTGA+AGG | 0.592014 | 5.4:-39457172 | MS.gene75406:CDS |
| ATAACTTACAAGAAAAGAGA+TGG | 0.597163 | 5.4:+39455295 | None:intergenic |
| CCGGAAAGTAACCTAGATTG+TGG | 0.605716 | 5.4:+39457076 | None:intergenic |
| TATGATGATCAAGGTTCACA+TGG | 0.609118 | 5.4:-39457265 | MS.gene75406:CDS |
| GTATACAAAAGATCAAAAGC+AGG | 0.610004 | 5.4:-39455067 | MS.gene75406:CDS |
| GGAATATACTGCCGTACATG+CGG | 0.610029 | 5.4:-39455963 | MS.gene75406:CDS |
| AGATGACGCGGTAACAAACC+AGG | 0.611437 | 5.4:+39457033 | None:intergenic |
| GCAGGGTGCAAATGCTGATG+AGG | 0.611917 | 5.4:-39456054 | MS.gene75406:intron |
| CAAAGACCACACTCTACACA+TGG | 0.613075 | 5.4:-39455232 | MS.gene75406:CDS |
| AAAATCACACTGAAAGCGCA+TGG | 0.616805 | 5.4:-39454972 | MS.gene75406:CDS |
| CATAAAGAACAGGATCATAG+AGG | 0.617267 | 5.4:-39456626 | MS.gene75406:CDS |
| GTGGATAAGATACACCGGCA+TGG | 0.619432 | 5.4:+39455181 | None:intergenic |
| GAACATTTATTATATTTGTG+AGG | 0.623911 | 5.4:+39457310 | None:intergenic |
| CAATTTCTGCACGAAGAAGG+CGG | 0.628751 | 5.4:-39456742 | MS.gene75406:CDS |
| TGATGGTAAGAGTGGTCCAA+AGG | 0.634249 | 5.4:-39456897 | MS.gene75406:CDS |
| TCCTGTGATGATGGTAAGAG+TGG | 0.654377 | 5.4:-39456905 | MS.gene75406:CDS |
| CCAACTATCAGGAAGAAAGA+CGG | 0.665654 | 5.4:-39456518 | MS.gene75406:CDS |
| AAAGAACAGGATCATAGAGG+TGG | 0.669391 | 5.4:-39456623 | MS.gene75406:CDS |
| TAGATTGTGGCAATGAAGAG+CGG | 0.677170 | 5.4:+39457089 | None:intergenic |
| AAAGAAAACGTATTGGAAAG+CGG | 0.682656 | 5.4:-39456483 | MS.gene75406:CDS |
| CAGATGTGGATAAGATACAC+CGG | 0.687722 | 5.4:+39455176 | None:intergenic |
| TTATCATGTGATGAAGAAGG+TGG | 0.694141 | 5.4:-39456791 | MS.gene75406:CDS |
| TGAAACCTTTAAAGATGACG+CGG | 0.702218 | 5.4:+39457021 | None:intergenic |
| GAAAACGTATTGGAAAGCGG+TGG | 0.722789 | 5.4:-39456480 | MS.gene75406:intron |
| GTTAAATGCTGATACCTGCG+AGG | 0.758695 | 5.4:-39456594 | MS.gene75406:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGACAATTATGATTTAT+AGG | - | chr5.4:39456129-39456148 | MS.gene75406:intron | 15.0% |
| !!! | GATTTAAATACTTTGTTTTT+TGG | - | chr5.4:39456184-39456203 | MS.gene75406:intron | 15.0% |
| !! | GAACATTTATTATATTTGTG+AGG | + | chr5.4:39455010-39455029 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTCAATTTCTT+TGG | - | chr5.4:39456893-39456912 | MS.gene75406:CDS | 20.0% |
| !!! | GTAAAACATTTTATACAGAT+AGG | + | chr5.4:39456034-39456053 | None:intergenic | 20.0% |
| !!! | TAATTACAAGTTTGAAATCA+TGG | + | chr5.4:39456568-39456587 | None:intergenic | 20.0% |
| !!! | TATGGATTCGATAATTTTAT+TGG | - | chr5.4:39455612-39455631 | MS.gene75406:CDS | 20.0% |
| !!! | TGGTTTTATCTTCTATTTTA+AGG | - | chr5.4:39456204-39456223 | MS.gene75406:intron | 20.0% |
| ! | AAAACATATCCAACCAAATA+AGG | + | chr5.4:39456608-39456627 | None:intergenic | 25.0% |
| ! | AAGATTGTGTATGAAGTTAT+GGG | - | chr5.4:39455343-39455362 | MS.gene75406:CDS | 25.0% |
| ! | ACAAGTAAAAGACAAGAAAT+GGG | + | chr5.4:39455973-39455992 | None:intergenic | 25.0% |
| ! | ATAACTTACAAGAAAAGAGA+TGG | + | chr5.4:39457025-39457044 | None:intergenic | 25.0% |
| ! | GTTGTCTAATTTATATCCAA+TGG | - | chr5.4:39456680-39456699 | MS.gene75406:CDS | 25.0% |
| ! | TCTAATTTATATCCAATGGT+AGG | - | chr5.4:39456684-39456703 | MS.gene75406:CDS | 25.0% |
| ! | TTGAAGTTCAAAACATTCAT+AGG | + | chr5.4:39455391-39455410 | None:intergenic | 25.0% |
| ! | TTTATCTTCTGTTCTCATTA+AGG | + | chr5.4:39457322-39457341 | None:intergenic | 25.0% |
| !! | AAGTTTCAAAGTGTAACTTT+TGG | + | chr5.4:39456507-39456526 | None:intergenic | 25.0% |
| !! | AATAAAAACTCTGAAGAAAG+AGG | - | chr5.4:39455081-39455100 | MS.gene75406:CDS | 25.0% |
| !! | AGTTTTTACTTGACTTACAA+TGG | + | chr5.4:39456415-39456434 | None:intergenic | 25.0% |
| !! | GTTCAGAAGTTAATTCTTTT+AGG | - | chr5.4:39455188-39455207 | MS.gene75406:CDS | 25.0% |
| !! | GTTTTTACTTGACTTACAAT+GGG | + | chr5.4:39456414-39456433 | None:intergenic | 25.0% |
| !! | TGATTTTCCTTATTAACCTT+TGG | + | chr5.4:39455439-39455458 | None:intergenic | 25.0% |
| !! | TGTAACTTTAGTTCCTTATT+TGG | - | chr5.4:39456592-39456611 | MS.gene75406:CDS | 25.0% |
| !!! | AAGGTGGTTATATTGTTTTT+CGG | - | chr5.4:39455542-39455561 | MS.gene75406:CDS | 25.0% |
| !!! | AGAAGTTAATTCTTTTAGGT+GGG | - | chr5.4:39455192-39455211 | MS.gene75406:CDS | 25.0% |
| !!! | AGTTATTTCGTTGAAGTTTT+TGG | + | chr5.4:39455141-39455160 | None:intergenic | 25.0% |
| !!! | ATCTTCTATTTTAAGGCTAA+AGG | - | chr5.4:39456211-39456230 | MS.gene75406:intron | 25.0% |
| !!! | GAAATTGAAAAGCTTTTTTC+TGG | + | chr5.4:39456891-39456910 | None:intergenic | 25.0% |
| !!! | GTAAAGTTTTATGATGATCA+AGG | - | chr5.4:39455043-39455062 | MS.gene75406:CDS | 25.0% |
| AAAGAAAAATCTGACACAAC+TGG | - | chr5.4:39456952-39456971 | MS.gene75406:CDS | 30.0% | |
| AAAGAAAACGTATTGGAAAG+CGG | - | chr5.4:39455834-39455853 | MS.gene75406:intron | 30.0% | |
| AACTCTTAAATACCATAGCA+GGG | - | chr5.4:39456246-39456265 | MS.gene75406:intron | 30.0% | |
| AAGAAAGAGGATAATGTGAT+TGG | - | chr5.4:39455094-39455113 | MS.gene75406:CDS | 30.0% | |
| AATAAGGAAAATCAGTTGAC+TGG | - | chr5.4:39455445-39455464 | MS.gene75406:CDS | 30.0% | |
| AATTTATATCCAATGGTAGG+TGG | - | chr5.4:39456687-39456706 | MS.gene75406:CDS | 30.0% | |
| ACATCAAGTTATCTTCTTGA+TGG | - | chr5.4:39455918-39455937 | MS.gene75406:intron | 30.0% | |
| ACTGTCAACAAAATCATAGT+CGG | - | chr5.4:39456054-39456073 | MS.gene75406:intron | 30.0% | |
| ATGTGAACATGATTATCGAT+TGG | - | chr5.4:39456320-39456339 | MS.gene75406:intron | 30.0% | |
| CAAAGAAAATGACAGTGTTT+GGG | - | chr5.4:39456828-39456847 | MS.gene75406:CDS | 30.0% | |
| CAAGATTGTGTATGAAGTTA+TGG | - | chr5.4:39455342-39455361 | MS.gene75406:CDS | 30.0% | |
| GACAAGTAAAAGACAAGAAA+TGG | + | chr5.4:39455974-39455993 | None:intergenic | 30.0% | |
| GACTGACATATAGAAAGAAA+TGG | - | chr5.4:39455884-39455903 | MS.gene75406:intron | 30.0% | |
| GGCAATTATCCTAATATTAG+TGG | - | chr5.4:39455364-39455383 | MS.gene75406:CDS | 30.0% | |
| GGTTTCATATGTCATAAGAT+CGG | - | chr5.4:39455312-39455331 | MS.gene75406:CDS | 30.0% | |
| GTATACAAAAGATCAAAAGC+AGG | - | chr5.4:39457250-39457269 | MS.gene75406:CDS | 30.0% | |
| TAATGGTATCAAGCATGATT+TGG | - | chr5.4:39457224-39457243 | MS.gene75406:CDS | 30.0% | |
| TATATGTCAGTCAAATCATC+AGG | + | chr5.4:39455876-39455895 | None:intergenic | 30.0% | |
| TATCGATGATCATAAAGAAC+AGG | - | chr5.4:39455681-39455700 | MS.gene75406:intron | 30.0% | |
| TGACACAAATAAAGAATCCA+AGG | - | chr5.4:39456293-39456312 | MS.gene75406:intron | 30.0% | |
| TGCTTGATACCATTAGAATT+TGG | + | chr5.4:39457219-39457238 | None:intergenic | 30.0% | |
| TTATCTTCTTGATGGAAATG+AGG | - | chr5.4:39455926-39455945 | MS.gene75406:CDS | 30.0% | |
| TTCAACCATAAATGGTTCAA+CGG | + | chr5.4:39456092-39456111 | None:intergenic | 30.0% | |
| TTCATAGGACCACTAATATT+AGG | + | chr5.4:39455376-39455395 | None:intergenic | 30.0% | |
| ! | ACTTTAGTTCCTTATTTGGT+TGG | - | chr5.4:39456596-39456615 | MS.gene75406:CDS | 30.0% |
| ! | CAGAAGTTAATTCTTTTAGG+TGG | - | chr5.4:39455191-39455210 | MS.gene75406:CDS | 30.0% |
| ! | TAGTTGACTTCAACCATAAA+TGG | + | chr5.4:39456100-39456119 | None:intergenic | 30.0% |
| ! | TTACAAGTTTGAAATCATGG+TGG | + | chr5.4:39456565-39456584 | None:intergenic | 30.0% |
| ! | TTCTTTGGAAAAACATTGCA+GGG | - | chr5.4:39456908-39456927 | MS.gene75406:CDS | 30.0% |
| ! | TTGTTACACGTTTTCTCATT+TGG | - | chr5.4:39456658-39456677 | MS.gene75406:CDS | 30.0% |
| ! | TTTCTTTGGAAAAACATTGC+AGG | - | chr5.4:39456907-39456926 | MS.gene75406:CDS | 30.0% |
| !! | AGGTGGTTATATTGTTTTTC+GGG | - | chr5.4:39455543-39455562 | MS.gene75406:CDS | 30.0% |
| !! | TATTTCGTTGAAGTTTTTGG+AGG | + | chr5.4:39455138-39455157 | None:intergenic | 30.0% |
| !!! | CTGTCATTTTCTTTGGATAT+TGG | + | chr5.4:39456823-39456842 | None:intergenic | 30.0% |
| AACTTCAAATCCTGTGATGA+TGG | - | chr5.4:39455403-39455422 | MS.gene75406:CDS | 35.0% | |
| AAGAAAAGAGATGGTGAGAA+AGG | + | chr5.4:39457016-39457035 | None:intergenic | 35.0% | |
| AAGATCAGACAAAAACTTCC+CGG | + | chr5.4:39455263-39455282 | None:intergenic | 35.0% | |
| ATAGTTGGATCTTCTTCAGA+TGG | + | chr5.4:39455787-39455806 | None:intergenic | 35.0% | |
| ATCATGTTCACATGTTTCCT+TGG | + | chr5.4:39456313-39456332 | None:intergenic | 35.0% | |
| ATTGACCGTTGAACCATTTA+TGG | - | chr5.4:39456084-39456103 | MS.gene75406:intron | 35.0% | |
| CAACTCTTAAATACCATAGC+AGG | - | chr5.4:39456245-39456264 | MS.gene75406:intron | 35.0% | |
| CATAAAGAACAGGATCATAG+AGG | - | chr5.4:39455691-39455710 | MS.gene75406:intron | 35.0% | |
| CCAAAGAAAATGACAGTGTT+TGG | - | chr5.4:39456827-39456846 | MS.gene75406:CDS | 35.0% | |
| CCATTATCATGTGATGAAGA+AGG | - | chr5.4:39455523-39455542 | MS.gene75406:CDS | 35.0% | |
| CCTTCTTCATCACATGATAA+TGG | + | chr5.4:39455526-39455545 | None:intergenic | 35.0% | |
| CTTCAACGAAATAACTGTGA+AGG | - | chr5.4:39455145-39455164 | MS.gene75406:CDS | 35.0% | |
| GAAACAAAGCAGTGAACATA+CGG | - | chr5.4:39456735-39456754 | MS.gene75406:CDS | 35.0% | |
| GCAGAAGAAAGAAAACGTAT+TGG | - | chr5.4:39455827-39455846 | MS.gene75406:intron | 35.0% | |
| GGAAGTAATTGATGCTTACA+TGG | - | chr5.4:39455744-39455763 | MS.gene75406:intron | 35.0% | |
| GGCAAAAAGAGTTCGAAAAA+TGG | - | chr5.4:39457106-39457125 | MS.gene75406:CDS | 35.0% | |
| TAACAATTTCTGCACGAAGA+AGG | - | chr5.4:39455572-39455591 | MS.gene75406:CDS | 35.0% | |
| TATGATGATCAAGGTTCACA+TGG | - | chr5.4:39455052-39455071 | MS.gene75406:CDS | 35.0% | |
| TCAACTGATGCTACTAATCT+TGG | - | chr5.4:39456793-39456812 | MS.gene75406:CDS | 35.0% | |
| TTATCATGTGATGAAGAAGG+TGG | - | chr5.4:39455526-39455545 | MS.gene75406:CDS | 35.0% | |
| ! | AGTTTTTGTCTGATCTTTCC+TGG | - | chr5.4:39455266-39455285 | MS.gene75406:CDS | 35.0% |
| ! | TATCGATTGGACGAACAAAT+TGG | - | chr5.4:39456333-39456352 | MS.gene75406:intron | 35.0% |
| ! | TGAAACCTTTAAAGATGACG+CGG | + | chr5.4:39455299-39455318 | None:intergenic | 35.0% |
| !! | GATAATGGAGACTCATTGTA+TGG | + | chr5.4:39455511-39455530 | None:intergenic | 35.0% |
| !! | TAACTTTTGGAAAATCGCAG+TGG | + | chr5.4:39456494-39456513 | None:intergenic | 35.0% |
| !! | TGCATGTTTTCTTTGAGTTC+AGG | + | chr5.4:39456862-39456881 | None:intergenic | 35.0% |
| !! | TTCTTTTAGGTGGGATTCAT+CGG | - | chr5.4:39455201-39455220 | MS.gene75406:CDS | 35.0% |
| !!! | CCAAACACTGTCATTTTCTT+TGG | + | chr5.4:39456830-39456849 | None:intergenic | 35.0% |
| AAAATGGAATGTTCCCATGC+CGG | - | chr5.4:39457122-39457141 | MS.gene75406:CDS | 40.0% | |
| AAAGAACAGGATCATAGAGG+TGG | - | chr5.4:39455694-39455713 | MS.gene75406:intron | 40.0% | |
| ACACCCTATTGTTCTTGTCA+TGG | - | chr5.4:39457278-39457297 | MS.gene75406:CDS | 40.0% | |
| AGCCCATGACAAGAACAATA+GGG | + | chr5.4:39457284-39457303 | None:intergenic | 40.0% | |
| ATATCCAATGGTAGGTGGAA+AGG | - | chr5.4:39456692-39456711 | MS.gene75406:CDS | 40.0% | |
| CACCCTATTGTTCTTGTCAT+GGG | - | chr5.4:39457279-39457298 | MS.gene75406:CDS | 40.0% | |
| CAGATGTGGATAAGATACAC+CGG | + | chr5.4:39457144-39457163 | None:intergenic | 40.0% | |
| CCAACTATCAGGAAGAAAGA+CGG | - | chr5.4:39455799-39455818 | MS.gene75406:intron | 40.0% | |
| CCTGGAGTTCCAAATTCTAA+TGG | - | chr5.4:39457207-39457226 | MS.gene75406:CDS | 40.0% | |
| CTGAAGAAGATCCAACTATC+AGG | - | chr5.4:39455788-39455807 | MS.gene75406:intron | 40.0% | |
| GAAAAACATTGCAGGGTCTA+TGG | - | chr5.4:39456915-39456934 | MS.gene75406:CDS | 40.0% | |
| GAAAAATCTGACACAACTGG+TGG | - | chr5.4:39456955-39456974 | MS.gene75406:CDS | 40.0% | |
| GAGTGGTCCAAAGGTTAATA+AGG | - | chr5.4:39455429-39455448 | MS.gene75406:CDS | 40.0% | |
| TAGATTGTGGCAATGAAGAG+CGG | + | chr5.4:39455231-39455250 | None:intergenic | 40.0% | |
| TAGCCCATGACAAGAACAAT+AGG | + | chr5.4:39457285-39457304 | None:intergenic | 40.0% | |
| TGAGGTGTGTGACTGAAATT+TGG | - | chr5.4:39455944-39455963 | MS.gene75406:CDS | 40.0% | |
| TGTGTTATATCTCATGCTCC+TGG | - | chr5.4:39456979-39456998 | MS.gene75406:CDS | 40.0% | |
| TGTTACCGCGTCATCTTTAA+AGG | - | chr5.4:39455291-39455310 | MS.gene75406:CDS | 40.0% | |
| TTCGACGACACCAAAATCAA+TGG | - | chr5.4:39457179-39457198 | MS.gene75406:CDS | 40.0% | |
| TTGGATCTTCTTCAGATGGT+AGG | + | chr5.4:39455783-39455802 | None:intergenic | 40.0% | |
| ! | AAAATCACACTGAAAGCGCA+TGG | - | chr5.4:39457345-39457364 | MS.gene75406:CDS | 40.0% |
| ! | CACAATCTAGGTTACTTTCC+GGG | - | chr5.4:39455242-39455261 | MS.gene75406:CDS | 40.0% |
| ! | CCAAAATCAATGGTTCTACC+TGG | - | chr5.4:39457189-39457208 | MS.gene75406:CDS | 40.0% |
| ! | CCACAATCTAGGTTACTTTC+CGG | - | chr5.4:39455241-39455260 | MS.gene75406:CDS | 40.0% |
| ! | CCATTAGAATTTGGAACTCC+AGG | + | chr5.4:39457210-39457229 | None:intergenic | 40.0% |
| ! | TTTTCACAAAGCCGCATGTA+CGG | + | chr5.4:39456368-39456387 | None:intergenic | 40.0% |
| ! | TTTTTGCCATGTGTAGAGTG+TGG | + | chr5.4:39457094-39457113 | None:intergenic | 40.0% |
| !! | GTTTGAAATCATGGTGGATC+TGG | + | chr5.4:39456559-39456578 | None:intergenic | 40.0% |
| !!! | CCAGGTAGAACCATTGATTT+TGG | + | chr5.4:39457192-39457211 | None:intergenic | 40.0% |
| ACCACTCTTACCATCATCAC+AGG | + | chr5.4:39455416-39455435 | None:intergenic | 45.0% | |
| AGCATCAATTACTTCCTCGC+AGG | + | chr5.4:39455740-39455759 | None:intergenic | 45.0% | |
| CAAAGACCACACTCTACACA+TGG | - | chr5.4:39457085-39457104 | MS.gene75406:CDS | 45.0% | |
| CAATTTCTGCACGAAGAAGG+CGG | - | chr5.4:39455575-39455594 | MS.gene75406:CDS | 45.0% | |
| CATGTGTAGAGTGTGGTCTT+TGG | + | chr5.4:39457087-39457106 | None:intergenic | 45.0% | |
| CCGGAAAGTAACCTAGATTG+TGG | + | chr5.4:39455244-39455263 | None:intergenic | 45.0% | |
| CCGTCTTTCTTCCTGATAGT+TGG | + | chr5.4:39455802-39455821 | None:intergenic | 45.0% | |
| GAAAACGTATTGGAAAGCGG+TGG | - | chr5.4:39455837-39455856 | MS.gene75406:intron | 45.0% | |
| GCTCTTCATTGCCACAATCT+AGG | - | chr5.4:39455230-39455249 | MS.gene75406:CDS | 45.0% | |
| GGAATATACTGCCGTACATG+CGG | - | chr5.4:39456354-39456373 | MS.gene75406:intron | 45.0% | |
| GGTAGGTGGAAAGGCTAAAA+TGG | - | chr5.4:39456701-39456720 | MS.gene75406:CDS | 45.0% | |
| GTTAAATGCTGATACCTGCG+AGG | - | chr5.4:39455723-39455742 | MS.gene75406:intron | 45.0% | |
| TGATGGTAAGAGTGGTCCAA+AGG | - | chr5.4:39455420-39455439 | MS.gene75406:CDS | 45.0% | |
| TGGATAAGATACACCGGCAT+GGG | + | chr5.4:39457138-39457157 | None:intergenic | 45.0% | |
| ! | AGAAAGGTTTTTCCAGCTCC+AGG | + | chr5.4:39457000-39457019 | None:intergenic | 45.0% |
| ! | TTAGCCTTTCCACCTACCAT+TGG | + | chr5.4:39456699-39456718 | None:intergenic | 45.0% |
| !! | GTCTTTGGAGCTAGGACTAA+TGG | + | chr5.4:39457072-39457091 | None:intergenic | 45.0% |
| !! | TCCTGTGATGATGGTAAGAG+TGG | - | chr5.4:39455412-39455431 | MS.gene75406:CDS | 45.0% |
| ACGAAGAAGGCGGTTCTGTA+AGG | - | chr5.4:39455585-39455604 | MS.gene75406:CDS | 50.0% | |
| AGATGACGCGGTAACAAACC+AGG | + | chr5.4:39455287-39455306 | None:intergenic | 50.0% | |
| ATATCTCATGCTCCTGGAGC+TGG | - | chr5.4:39456985-39457004 | MS.gene75406:CDS | 50.0% | |
| GTGGATAAGATACACCGGCA+TGG | + | chr5.4:39457139-39457158 | None:intergenic | 50.0% | |
| TCAGCATTTGCACCCTGCTA+TGG | + | chr5.4:39456261-39456280 | None:intergenic | 50.0% | |
| ! | GCGGTTCTGTAAGGAGCATA+TGG | - | chr5.4:39455594-39455613 | MS.gene75406:CDS | 50.0% |
| !! | AGAGTGTGGTCTTTGGAGCT+AGG | + | chr5.4:39457080-39457099 | None:intergenic | 50.0% |
| !! | TTGGTGTCGTCGAATGTCTC+TGG | + | chr5.4:39457173-39457192 | None:intergenic | 50.0% |
| CGTATTGGAAAGCGGTGGTG+AGG | - | chr5.4:39455842-39455861 | MS.gene75406:intron | 55.0% | |
| GCAGGGTGCAAATGCTGATG+AGG | - | chr5.4:39456263-39456282 | MS.gene75406:intron | 55.0% | |
| ! | GTCTCTGGCTTCGACAGATG+TGG | + | chr5.4:39457158-39457177 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 39454968 | 39457371 | 39454968 | ID=MS.gene75406 |
| chr5.4 | mRNA | 39454968 | 39457371 | 39454968 | ID=MS.gene75406.t1;Parent=MS.gene75406 |
| chr5.4 | exon | 39456481 | 39457371 | 39456481 | ID=MS.gene75406.t1.exon1;Parent=MS.gene75406.t1 |
| chr5.4 | CDS | 39456481 | 39457371 | 39456481 | ID=cds.MS.gene75406.t1;Parent=MS.gene75406.t1 |
| chr5.4 | exon | 39455923 | 39456072 | 39455923 | ID=MS.gene75406.t1.exon2;Parent=MS.gene75406.t1 |
| chr5.4 | CDS | 39455923 | 39456072 | 39455923 | ID=cds.MS.gene75406.t1;Parent=MS.gene75406.t1 |
| chr5.4 | exon | 39454968 | 39455633 | 39454968 | ID=MS.gene75406.t1.exon3;Parent=MS.gene75406.t1 |
| chr5.4 | CDS | 39454968 | 39455633 | 39454968 | ID=cds.MS.gene75406.t1;Parent=MS.gene75406.t1 |
| Gene Sequence |
| Protein sequence |
