Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75461.t1 | XP_003601983.1 | 94.6 | 429 | 22 | 1 | 1 | 429 | 1 | 428 | 2.80E-221 | 777.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75461.t1 | Q9SLH0 | 61.6 | 279 | 93 | 5 | 10 | 280 | 28 | 300 | 3.9e-91 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75461.t1 | G7J4B1 | 94.6 | 429 | 22 | 1 | 1 | 429 | 1 | 428 | 2.0e-221 | 777.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene75461.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75461.t1 | MTR_3g087530 | 95.105 | 429 | 20 | 1 | 1 | 429 | 1 | 428 | 0.0 | 785 |
| MS.gene75461.t1 | MTR_8g091370 | 52.477 | 444 | 172 | 7 | 15 | 423 | 5 | 444 | 2.61e-147 | 426 |
| MS.gene75461.t1 | MTR_5g087790 | 56.869 | 313 | 111 | 7 | 22 | 326 | 39 | 335 | 1.97e-113 | 345 |
| MS.gene75461.t1 | MTR_3g078770 | 57.718 | 298 | 102 | 6 | 2 | 280 | 9 | 301 | 1.17e-110 | 339 |
| MS.gene75461.t1 | MTR_2g098470 | 51.887 | 318 | 131 | 7 | 4 | 305 | 11 | 322 | 4.15e-101 | 314 |
| MS.gene75461.t1 | MTR_6g460640 | 48.175 | 274 | 121 | 6 | 16 | 280 | 26 | 287 | 9.63e-86 | 275 |
| MS.gene75461.t1 | MTR_6g060600 | 39.454 | 403 | 199 | 10 | 16 | 403 | 26 | 398 | 3.70e-84 | 271 |
| MS.gene75461.t1 | MTR_3g010790 | 50.495 | 202 | 90 | 3 | 83 | 280 | 1 | 196 | 2.31e-69 | 228 |
| MS.gene75461.t1 | MTR_1g024420 | 46.078 | 102 | 50 | 2 | 29 | 125 | 7 | 108 | 4.11e-24 | 97.1 |
| MS.gene75461.t1 | MTR_7g095580 | 41.250 | 80 | 43 | 1 | 72 | 151 | 1 | 76 | 9.12e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75461.t1 | AT5G65100 | 61.679 | 274 | 87 | 1 | 27 | 282 | 33 | 306 | 6.41e-120 | 360 |
| MS.gene75461.t1 | AT5G10120 | 53.939 | 330 | 140 | 5 | 25 | 349 | 16 | 338 | 1.49e-118 | 354 |
| MS.gene75461.t1 | AT2G27050 | 63.100 | 271 | 86 | 5 | 18 | 280 | 36 | 300 | 7.28e-115 | 348 |
| MS.gene75461.t1 | AT3G20770 | 55.625 | 320 | 113 | 9 | 13 | 322 | 31 | 331 | 6.22e-110 | 337 |
| MS.gene75461.t1 | AT1G73730 | 48.910 | 321 | 142 | 6 | 9 | 323 | 4 | 308 | 2.77e-99 | 307 |
| MS.gene75461.t1 | AT1G73730 | 48.910 | 321 | 142 | 6 | 9 | 323 | 16 | 320 | 3.41e-99 | 307 |
| MS.gene75461.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.54e-78 | 252 |
| MS.gene75461.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 52 | 304 | 2.54e-78 | 252 |
| MS.gene75461.t1 | AT5G21120 | 48.221 | 253 | 124 | 2 | 36 | 281 | 59 | 311 | 2.71e-78 | 252 |
Find 93 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTACAATAGACAATTTA+TGG | 0.077687 | 3.3:-72954772 | None:intergenic |
| GAGATTGAAGGTGGGAAATT+TGG | 0.186624 | 3.3:+72955001 | MS.gene75461:CDS |
| TGTTGATGATTGGTTGAAAA+TGG | 0.189311 | 3.3:+72954976 | MS.gene75461:CDS |
| AGAAGATGTATGTAAGAATT+TGG | 0.224002 | 3.3:-72954365 | None:intergenic |
| AAGGTGGTGGGCCTTGTTCT+TGG | 0.225823 | 3.3:-72954544 | None:intergenic |
| AAAACATATGTCACCTGATT+TGG | 0.233366 | 3.3:+72954625 | MS.gene75461:CDS |
| AGGTCATGTGGTTTCTTATA+AGG | 0.240985 | 3.3:-72954563 | None:intergenic |
| CACCTGATTTGGAGAAATTA+AGG | 0.264068 | 3.3:+72954636 | MS.gene75461:CDS |
| GCATCACAATCAAGCAAATT+AGG | 0.277177 | 3.3:-72954941 | None:intergenic |
| TTCCTTAATTTCTCCAAATC+AGG | 0.277968 | 3.3:-72954638 | None:intergenic |
| GGCCCACAGGATTAGAAAAT+TGG | 0.318543 | 3.3:+72954498 | MS.gene75461:CDS |
| GAAACCACATGACCTTAAAA+AGG | 0.331860 | 3.3:+72954571 | MS.gene75461:CDS |
| AGACAATTTATGGCATTTAT+CGG | 0.339024 | 3.3:-72954762 | None:intergenic |
| TAAAATGTTCATCTTCTTGA+AGG | 0.356058 | 3.3:-72954325 | None:intergenic |
| AGGTGGTGGGCCTTGTTCTT+GGG | 0.363001 | 3.3:-72954543 | None:intergenic |
| GGCATGGAAAGTTTCTGTTT+TGG | 0.364875 | 3.3:+72954592 | MS.gene75461:CDS |
| ATCTACCTCTTCAGTTCCTT+CGG | 0.367358 | 3.3:-72953955 | None:intergenic |
| GCGGCAATCGAAATGGTAAA+AGG | 0.387494 | 3.3:+72955073 | MS.gene75461:CDS |
| GAGTTGAATCTTGTAAATCT+TGG | 0.394723 | 3.3:-72954388 | None:intergenic |
| TTTGGAGAAATTAAGGAAGT+TGG | 0.395073 | 3.3:+72954643 | MS.gene75461:CDS |
| GAAAAGGGTAAACCAGTATC+AGG | 0.402465 | 3.3:+72954215 | MS.gene75461:CDS |
| GATTCCATAAACAAAACCTT+TGG | 0.403082 | 3.3:-72954186 | None:intergenic |
| GATTTACAAGATTCAACTCT+TGG | 0.415106 | 3.3:+72954392 | MS.gene75461:CDS |
| TTATGGAATCATCCCTGAAA+AGG | 0.418370 | 3.3:+72954199 | MS.gene75461:CDS |
| AGTGACGATATTGATCCTTA+TGG | 0.425477 | 3.3:+72953924 | MS.gene75461:CDS |
| CCTTCGGCTTCCACGCCATA+AGG | 0.429765 | 3.3:-72953939 | None:intergenic |
| TGTGGTTTCTTATAAGGTGG+TGG | 0.433405 | 3.3:-72954557 | None:intergenic |
| GAATTGAAAATGTTGATGAT+TGG | 0.439281 | 3.3:+72954966 | MS.gene75461:CDS |
| GTTGATGATTGGTTGAAAAT+GGG | 0.440872 | 3.3:+72954977 | MS.gene75461:CDS |
| CTATCAGAAGAACCTGATAC+TGG | 0.447835 | 3.3:-72954227 | None:intergenic |
| CAAATACATGGCAAAGATCA+TGG | 0.447987 | 3.3:+72954151 | MS.gene75461:CDS |
| GTAATAACAGAAGTGAGAAA+AGG | 0.454452 | 3.3:+72954831 | MS.gene75461:CDS |
| ATTCGAAGCGGCAATCGAAA+TGG | 0.459117 | 3.3:+72955066 | MS.gene75461:CDS |
| AATCAAGAAGAAGCTTTGCT+TGG | 0.469320 | 3.3:+72954734 | MS.gene75461:CDS |
| TGTTCATCTTCTTGAAGGAT+AGG | 0.475070 | 3.3:-72954320 | None:intergenic |
| CATTCTATTTAGTCTTGCGC+TGG | 0.480486 | 3.3:-72955187 | None:intergenic |
| CTGCAAGAGATAGTGCTACT+TGG | 0.489905 | 3.3:+72954699 | MS.gene75461:CDS |
| TTGAAGGTGGGAAATTTGGA+TGG | 0.490896 | 3.3:+72955005 | MS.gene75461:CDS |
| TATGGAATCATCCCTGAAAA+GGG | 0.513987 | 3.3:+72954200 | MS.gene75461:CDS |
| GTGGTTTCTTATAAGGTGGT+GGG | 0.519151 | 3.3:-72954556 | None:intergenic |
| GTGGGGTGAACAAGGTCTGT+TGG | 0.522121 | 3.3:+72954520 | MS.gene75461:CDS |
| TCTCCTCCATGGTGGCCCAC+AGG | 0.524329 | 3.3:+72954485 | MS.gene75461:CDS |
| TTGAAAATGGGAGAGATTGA+AGG | 0.525609 | 3.3:+72954989 | MS.gene75461:CDS |
| AGAGGGGAATTTCTCCTCCA+TGG | 0.534345 | 3.3:+72954474 | MS.gene75461:CDS |
| TCCGCAGAGTAAGTTACCTA+TGG | 0.540781 | 3.3:+72954892 | MS.gene75461:CDS |
| GTAGAGGAAGGTGAAAGCTC+TGG | 0.542132 | 3.3:+72954788 | MS.gene75461:CDS |
| GAAAATTGGTGGGGTGAACA+AGG | 0.545195 | 3.3:+72954512 | MS.gene75461:CDS |
| CCACAGGATTAGAAAATTGG+TGG | 0.547684 | 3.3:+72954501 | MS.gene75461:CDS |
| AACAGAAAGTGTGGACTATG+AGG | 0.556253 | 3.3:+72953986 | MS.gene75461:CDS |
| TGAAGGTGGGAAATTTGGAT+GGG | 0.560628 | 3.3:+72955006 | MS.gene75461:CDS |
| GGTCTGTTGGCCCAAGAACA+AGG | 0.567933 | 3.3:+72954533 | MS.gene75461:CDS |
| CTTCTGATAGTTTACGCGAG+TGG | 0.569816 | 3.3:+72954240 | MS.gene75461:CDS |
| CCATAAATTGTCTATTGTAG+AGG | 0.575509 | 3.3:+72954772 | MS.gene75461:CDS |
| CAAAACAAGAAGCATCGAGA+AGG | 0.577217 | 3.3:+72954096 | MS.gene75461:CDS |
| AAAATGGGAGAGATTGAAGG+TGG | 0.578746 | 3.3:+72954992 | MS.gene75461:CDS |
| AGGAGCTGAAGAAACGTATG+TGG | 0.578948 | 3.3:+72954006 | MS.gene75461:CDS |
| TCTAATCCTGTGGGCCACCA+TGG | 0.579340 | 3.3:-72954491 | None:intergenic |
| CTGATAGTTTACGCGAGTGG+TGG | 0.579904 | 3.3:+72954243 | MS.gene75461:CDS |
| TGATCAAAGTGCACCACTCG+CGG | 0.580612 | 3.3:+72954283 | MS.gene75461:CDS |
| CACAGGATTAGAAAATTGGT+GGG | 0.587810 | 3.3:+72954502 | MS.gene75461:CDS |
| GAGGAGGTTTCCACTCGAGA+GGG | 0.588256 | 3.3:+72954457 | MS.gene75461:CDS |
| AAATGGGAGAGATTGAAGGT+GGG | 0.590105 | 3.3:+72954993 | MS.gene75461:CDS |
| GTTGTTAAACTCATAGCCAT+AGG | 0.592800 | 3.3:-72954908 | None:intergenic |
| GTGGTGCACTTTGATCAAAA+CGG | 0.595848 | 3.3:-72954277 | None:intergenic |
| TGAAACTGAAACAGAAAGTG+TGG | 0.596612 | 3.3:+72953977 | MS.gene75461:CDS |
| GGAGAAATTCCCCTCTCGAG+TGG | 0.599812 | 3.3:-72954467 | None:intergenic |
| TCATGTGGTTTCTTATAAGG+TGG | 0.601388 | 3.3:-72954560 | None:intergenic |
| AGTGGAAACCTCCTCTGTGG+TGG | 0.601734 | 3.3:-72954449 | None:intergenic |
| TTGGATGGGATGTTGAACAT+TGG | 0.603559 | 3.3:+72955020 | MS.gene75461:CDS |
| GCATAATCTACATGATCAAG+AGG | 0.603727 | 3.3:+72955129 | MS.gene75461:CDS |
| CCTTATGGCGTGGAAGCCGA+AGG | 0.608551 | 3.3:+72953939 | MS.gene75461:CDS |
| GCTGAAGAAACGTATGTGGA+AGG | 0.612562 | 3.3:+72954010 | MS.gene75461:CDS |
| CGATATTGATCCTTATGGCG+TGG | 0.616407 | 3.3:+72953929 | MS.gene75461:CDS |
| AAGCAAATTAGGAACACGAT+GGG | 0.617311 | 3.3:-72954930 | None:intergenic |
| AAATTGTCTATTGTAGAGGA+AGG | 0.619180 | 3.3:+72954776 | MS.gene75461:CDS |
| AGATTCAGTACTCAAATACA+TGG | 0.630198 | 3.3:+72954139 | MS.gene75461:CDS |
| AGAGGAGGTTTCCACTCGAG+AGG | 0.641374 | 3.3:+72954456 | MS.gene75461:CDS |
| TGAACATTGGCTGAATGATG+TGG | 0.642242 | 3.3:+72955033 | MS.gene75461:CDS |
| ATGGATGTATGCAAAGCCAA+AGG | 0.644473 | 3.3:+72954170 | MS.gene75461:CDS |
| GGTAAAAGGTAATCATAACA+TGG | 0.646961 | 3.3:+72955087 | MS.gene75461:CDS |
| GGAAGCCGAAGGAACTGAAG+AGG | 0.651144 | 3.3:+72953950 | MS.gene75461:CDS |
| CAAGCAAATTAGGAACACGA+TGG | 0.654501 | 3.3:-72954931 | None:intergenic |
| GGGGAATTTCTCCTCCATGG+TGG | 0.664010 | 3.3:+72954477 | MS.gene75461:CDS |
| GAGGAAGGTGAAAGCTCTGG+CGG | 0.666246 | 3.3:+72954791 | MS.gene75461:CDS |
| AGGAGGTTTCCACTCGAGAG+GGG | 0.673102 | 3.3:+72954458 | MS.gene75461:CDS |
| AATCCTGTGGGCCACCATGG+AGG | 0.673179 | 3.3:-72954488 | None:intergenic |
| TCGAGTGGAAACCTCCTCTG+TGG | 0.673267 | 3.3:-72954452 | None:intergenic |
| ACTGTGTGCCACCACAGAGG+AGG | 0.682764 | 3.3:+72954441 | MS.gene75461:CDS |
| ACAGGATTAGAAAATTGGTG+GGG | 0.694629 | 3.3:+72954503 | MS.gene75461:CDS |
| GCCATAGGTAACTTACTCTG+CGG | 0.696224 | 3.3:-72954893 | None:intergenic |
| GGATGATCATGAATTCGAAG+CGG | 0.715431 | 3.3:+72955054 | MS.gene75461:CDS |
| ATCGTCACTGATCACCACCA+TGG | 0.725060 | 3.3:-72953910 | None:intergenic |
| AACACTGTGTGCCACCACAG+AGG | 0.743629 | 3.3:+72954438 | MS.gene75461:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAACATTTTAATACTATAA+TGG | + | chr3.3:72954337-72954356 | MS.gene75461:CDS | 15.0% |
| !!! | TTTCTTTGAACTTTTGTAAA+AGG | - | chr3.3:72954043-72954062 | None:intergenic | 20.0% |
| ! | AAGAGGAAGAAAAATCTATT+TGG | + | chr3.3:72955146-72955165 | MS.gene75461:CDS | 25.0% |
| ! | AGAAGATGTATGTAAGAATT+TGG | - | chr3.3:72954368-72954387 | None:intergenic | 25.0% |
| ! | AGACAATTTATGGCATTTAT+CGG | - | chr3.3:72954765-72954784 | None:intergenic | 25.0% |
| ! | AGAGGAAGAAAAATCTATTT+GGG | + | chr3.3:72955147-72955166 | MS.gene75461:CDS | 25.0% |
| ! | TAAAATGTTCATCTTCTTGA+AGG | - | chr3.3:72954328-72954347 | None:intergenic | 25.0% |
| !! | ATGGATTTTACTCAAAATCA+AGG | + | chr3.3:72955106-72955125 | MS.gene75461:CDS | 25.0% |
| !! | TGGATTTTACTCAAAATCAA+GGG | + | chr3.3:72955107-72955126 | MS.gene75461:CDS | 25.0% |
| !!! | GAATTGAAAATGTTGATGAT+TGG | + | chr3.3:72954966-72954985 | MS.gene75461:CDS | 25.0% |
| AAAACATATGTCACCTGATT+TGG | + | chr3.3:72954625-72954644 | MS.gene75461:CDS | 30.0% | |
| AAATTGTCTATTGTAGAGGA+AGG | + | chr3.3:72954776-72954795 | MS.gene75461:CDS | 30.0% | |
| AGATTCAGTACTCAAATACA+TGG | + | chr3.3:72954139-72954158 | MS.gene75461:CDS | 30.0% | |
| CCATAAATTGTCTATTGTAG+AGG | + | chr3.3:72954772-72954791 | MS.gene75461:CDS | 30.0% | |
| CCTCTACAATAGACAATTTA+TGG | - | chr3.3:72954775-72954794 | None:intergenic | 30.0% | |
| GAGTTGAATCTTGTAAATCT+TGG | - | chr3.3:72954391-72954410 | None:intergenic | 30.0% | |
| GATTCCATAAACAAAACCTT+TGG | - | chr3.3:72954189-72954208 | None:intergenic | 30.0% | |
| GATTTACAAGATTCAACTCT+TGG | + | chr3.3:72954392-72954411 | MS.gene75461:CDS | 30.0% | |
| GGTAAAAGGTAATCATAACA+TGG | + | chr3.3:72955087-72955106 | MS.gene75461:CDS | 30.0% | |
| GTAATAACAGAAGTGAGAAA+AGG | + | chr3.3:72954831-72954850 | MS.gene75461:CDS | 30.0% | |
| TTCCTTAATTTCTCCAAATC+AGG | - | chr3.3:72954641-72954660 | None:intergenic | 30.0% | |
| TTTGGAGAAATTAAGGAAGT+TGG | + | chr3.3:72954643-72954662 | MS.gene75461:CDS | 30.0% | |
| ! | AAACTTTCCATGCCTTTTTA+AGG | - | chr3.3:72954586-72954605 | None:intergenic | 30.0% |
| !! | GTTGATGATTGGTTGAAAAT+GGG | + | chr3.3:72954977-72954996 | MS.gene75461:CDS | 30.0% |
| !! | TGTTGATGATTGGTTGAAAA+TGG | + | chr3.3:72954976-72954995 | MS.gene75461:CDS | 30.0% |
| !!! | AAAGCCAAAGGTTTTGTTTA+TGG | + | chr3.3:72954182-72954201 | MS.gene75461:CDS | 30.0% |
| !!! | AAGTTTGTTTTTGATGTTGG+TGG | + | chr3.3:72954854-72954873 | MS.gene75461:CDS | 30.0% |
| !!! | AGGAAGTTTGTTTTTGATGT+TGG | + | chr3.3:72954851-72954870 | MS.gene75461:CDS | 30.0% |
| AAGCAAATTAGGAACACGAT+GGG | - | chr3.3:72954933-72954952 | None:intergenic | 35.0% | |
| AATCAAGAAGAAGCTTTGCT+TGG | + | chr3.3:72954734-72954753 | MS.gene75461:CDS | 35.0% | |
| ACAGGATTAGAAAATTGGTG+GGG | + | chr3.3:72954503-72954522 | MS.gene75461:CDS | 35.0% | |
| AGGTCATGTGGTTTCTTATA+AGG | - | chr3.3:72954566-72954585 | None:intergenic | 35.0% | |
| AGTGACGATATTGATCCTTA+TGG | + | chr3.3:72953924-72953943 | MS.gene75461:CDS | 35.0% | |
| CAAATACATGGCAAAGATCA+TGG | + | chr3.3:72954151-72954170 | MS.gene75461:CDS | 35.0% | |
| CACAGGATTAGAAAATTGGT+GGG | + | chr3.3:72954502-72954521 | MS.gene75461:CDS | 35.0% | |
| GAAACCACATGACCTTAAAA+AGG | + | chr3.3:72954571-72954590 | MS.gene75461:CDS | 35.0% | |
| GCATAATCTACATGATCAAG+AGG | + | chr3.3:72955129-72955148 | MS.gene75461:CDS | 35.0% | |
| GCATCACAATCAAGCAAATT+AGG | - | chr3.3:72954944-72954963 | None:intergenic | 35.0% | |
| GTTGTTAAACTCATAGCCAT+AGG | - | chr3.3:72954911-72954930 | None:intergenic | 35.0% | |
| TATGGAATCATCCCTGAAAA+GGG | + | chr3.3:72954200-72954219 | MS.gene75461:CDS | 35.0% | |
| TCATGTGGTTTCTTATAAGG+TGG | - | chr3.3:72954563-72954582 | None:intergenic | 35.0% | |
| TGAAACTGAAACAGAAAGTG+TGG | + | chr3.3:72953977-72953996 | MS.gene75461:CDS | 35.0% | |
| TGTTCATCTTCTTGAAGGAT+AGG | - | chr3.3:72954323-72954342 | None:intergenic | 35.0% | |
| TTATGGAATCATCCCTGAAA+AGG | + | chr3.3:72954199-72954218 | MS.gene75461:CDS | 35.0% | |
| TTGAAAATGGGAGAGATTGA+AGG | + | chr3.3:72954989-72955008 | MS.gene75461:CDS | 35.0% | |
| ! | CACCAATTTTCTAATCCTGT+GGG | - | chr3.3:72954503-72954522 | None:intergenic | 35.0% |
| !! | CACCTGATTTGGAGAAATTA+AGG | + | chr3.3:72954636-72954655 | MS.gene75461:CDS | 35.0% |
| !!! | ATACTGGTTTACCCTTTTCA+GGG | - | chr3.3:72954214-72954233 | None:intergenic | 35.0% |
| AAAATGGGAGAGATTGAAGG+TGG | + | chr3.3:72954992-72955011 | MS.gene75461:CDS | 40.0% | |
| AAATGGGAGAGATTGAAGGT+GGG | + | chr3.3:72954993-72955012 | MS.gene75461:CDS | 40.0% | |
| ATCTACCTCTTCAGTTCCTT+CGG | - | chr3.3:72953958-72953977 | None:intergenic | 40.0% | |
| ATGGATGTATGCAAAGCCAA+AGG | + | chr3.3:72954170-72954189 | MS.gene75461:CDS | 40.0% | |
| CAAGCAAATTAGGAACACGA+TGG | - | chr3.3:72954934-72954953 | None:intergenic | 40.0% | |
| CACATGACCTTAAAAAGGCA+TGG | + | chr3.3:72954576-72954595 | MS.gene75461:CDS | 40.0% | |
| CCACAGGATTAGAAAATTGG+TGG | + | chr3.3:72954501-72954520 | MS.gene75461:CDS | 40.0% | |
| CTATCAGAAGAACCTGATAC+TGG | - | chr3.3:72954230-72954249 | None:intergenic | 40.0% | |
| GAAAAGGGTAAACCAGTATC+AGG | + | chr3.3:72954215-72954234 | MS.gene75461:CDS | 40.0% | |
| GAGATTGAAGGTGGGAAATT+TGG | + | chr3.3:72955001-72955020 | MS.gene75461:CDS | 40.0% | |
| GGATGATCATGAATTCGAAG+CGG | + | chr3.3:72955054-72955073 | MS.gene75461:CDS | 40.0% | |
| GTGGTGCACTTTGATCAAAA+CGG | - | chr3.3:72954280-72954299 | None:intergenic | 40.0% | |
| GTGGTTTCTTATAAGGTGGT+GGG | - | chr3.3:72954559-72954578 | None:intergenic | 40.0% | |
| TGAAGGTGGGAAATTTGGAT+GGG | + | chr3.3:72955006-72955025 | MS.gene75461:CDS | 40.0% | |
| TGTGGTTTCTTATAAGGTGG+TGG | - | chr3.3:72954560-72954579 | None:intergenic | 40.0% | |
| TTGAAGGTGGGAAATTTGGA+TGG | + | chr3.3:72955005-72955024 | MS.gene75461:CDS | 40.0% | |
| TTGGATGGGATGTTGAACAT+TGG | + | chr3.3:72955020-72955039 | MS.gene75461:CDS | 40.0% | |
| ! | AACAGAAAGTGTGGACTATG+AGG | + | chr3.3:72953986-72954005 | MS.gene75461:CDS | 40.0% |
| ! | CCACCAATTTTCTAATCCTG+TGG | - | chr3.3:72954504-72954523 | None:intergenic | 40.0% |
| ! | GGCATGGAAAGTTTCTGTTT+TGG | + | chr3.3:72954592-72954611 | MS.gene75461:CDS | 40.0% |
| ! | TGAACATTGGCTGAATGATG+TGG | + | chr3.3:72955033-72955052 | MS.gene75461:CDS | 40.0% |
| !! | CAAAACAAGAAGCATCGAGA+AGG | + | chr3.3:72954096-72954115 | MS.gene75461:CDS | 40.0% |
| !!! | CATGCCTTTTTAAGGTCATG+TGG | - | chr3.3:72954578-72954597 | None:intergenic | 40.0% |
| !!! | GATACTGGTTTACCCTTTTC+AGG | - | chr3.3:72954215-72954234 | None:intergenic | 40.0% |
| !!! | TCTTGTTTTGCTTGTTGCTC+AGG | - | chr3.3:72954086-72954105 | None:intergenic | 40.0% |
| AGGAGCTGAAGAAACGTATG+TGG | + | chr3.3:72954006-72954025 | MS.gene75461:CDS | 45.0% | |
| ATTCGAAGCGGCAATCGAAA+TGG | + | chr3.3:72955066-72955085 | MS.gene75461:CDS | 45.0% | |
| CGATATTGATCCTTATGGCG+TGG | + | chr3.3:72953929-72953948 | MS.gene75461:CDS | 45.0% | |
| CTTCTGATAGTTTACGCGAG+TGG | + | chr3.3:72954240-72954259 | MS.gene75461:CDS | 45.0% | |
| GAAAATTGGTGGGGTGAACA+AGG | + | chr3.3:72954512-72954531 | MS.gene75461:CDS | 45.0% | |
| GCCATAGGTAACTTACTCTG+CGG | - | chr3.3:72954896-72954915 | None:intergenic | 45.0% | |
| GCGGCAATCGAAATGGTAAA+AGG | + | chr3.3:72955073-72955092 | MS.gene75461:CDS | 45.0% | |
| GCTGAAGAAACGTATGTGGA+AGG | + | chr3.3:72954010-72954029 | MS.gene75461:CDS | 45.0% | |
| GGCCCACAGGATTAGAAAAT+TGG | + | chr3.3:72954498-72954517 | MS.gene75461:CDS | 45.0% | |
| TCCGCAGAGTAAGTTACCTA+TGG | + | chr3.3:72954892-72954911 | MS.gene75461:CDS | 45.0% | |
| ! | AAGTATTTTGCAACCGCGAG+TGG | - | chr3.3:72954299-72954318 | None:intergenic | 45.0% |
| ! | CTGCAAGAGATAGTGCTACT+TGG | + | chr3.3:72954699-72954718 | MS.gene75461:CDS | 45.0% |
| AGAGGGGAATTTCTCCTCCA+TGG | + | chr3.3:72954474-72954493 | MS.gene75461:CDS | 50.0% | |
| CTGATAGTTTACGCGAGTGG+TGG | + | chr3.3:72954243-72954262 | MS.gene75461:CDS | 50.0% | |
| GTAGAGGAAGGTGAAAGCTC+TGG | + | chr3.3:72954788-72954807 | MS.gene75461:CDS | 50.0% | |
| TGATCAAAGTGCACCACTCG+CGG | + | chr3.3:72954283-72954302 | MS.gene75461:CDS | 50.0% | |
| AACACTGTGTGCCACCACAG+AGG | + | chr3.3:72954438-72954457 | MS.gene75461:CDS | 55.0% | |
| AGAGGAGGTTTCCACTCGAG+AGG | + | chr3.3:72954456-72954475 | MS.gene75461:CDS | 55.0% | |
| AGGAGGTTTCCACTCGAGAG+GGG | + | chr3.3:72954458-72954477 | MS.gene75461:CDS | 55.0% | |
| AGTGGAAACCTCCTCTGTGG+TGG | - | chr3.3:72954452-72954471 | None:intergenic | 55.0% | |
| GAGGAGGTTTCCACTCGAGA+GGG | + | chr3.3:72954457-72954476 | MS.gene75461:CDS | 55.0% | |
| GGAAGCCGAAGGAACTGAAG+AGG | + | chr3.3:72953950-72953969 | MS.gene75461:CDS | 55.0% | |
| GGAGAAATTCCCCTCTCGAG+TGG | - | chr3.3:72954470-72954489 | None:intergenic | 55.0% | |
| GGGGAATTTCTCCTCCATGG+TGG | + | chr3.3:72954477-72954496 | MS.gene75461:CDS | 55.0% | |
| GGTCTGTTGGCCCAAGAACA+AGG | + | chr3.3:72954533-72954552 | MS.gene75461:CDS | 55.0% | |
| GTGGGGTGAACAAGGTCTGT+TGG | + | chr3.3:72954520-72954539 | MS.gene75461:CDS | 55.0% | |
| TCGAGTGGAAACCTCCTCTG+TGG | - | chr3.3:72954455-72954474 | None:intergenic | 55.0% | |
| TCTAATCCTGTGGGCCACCA+TGG | - | chr3.3:72954494-72954513 | None:intergenic | 55.0% | |
| ! | GAGGAAGGTGAAAGCTCTGG+CGG | + | chr3.3:72954791-72954810 | MS.gene75461:CDS | 55.0% |
| !! | AAGGTGGTGGGCCTTGTTCT+TGG | - | chr3.3:72954547-72954566 | None:intergenic | 55.0% |
| !! | AGGTGGTGGGCCTTGTTCTT+GGG | - | chr3.3:72954546-72954565 | None:intergenic | 55.0% |
| AATCCTGTGGGCCACCATGG+AGG | - | chr3.3:72954491-72954510 | None:intergenic | 60.0% | |
| ACTGTGTGCCACCACAGAGG+AGG | + | chr3.3:72954441-72954460 | MS.gene75461:CDS | 60.0% | |
| CCTTATGGCGTGGAAGCCGA+AGG | + | chr3.3:72953939-72953958 | MS.gene75461:CDS | 60.0% | |
| CCTTCGGCTTCCACGCCATA+AGG | - | chr3.3:72953942-72953961 | None:intergenic | 60.0% | |
| TCTCCTCCATGGTGGCCCAC+AGG | + | chr3.3:72954485-72954504 | MS.gene75461:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 72953912 | 72955201 | 72953912 | ID=MS.gene75461 |
| chr3.3 | mRNA | 72953912 | 72955201 | 72953912 | ID=MS.gene75461.t1;Parent=MS.gene75461 |
| chr3.3 | exon | 72953912 | 72955201 | 72953912 | ID=MS.gene75461.t1.exon1;Parent=MS.gene75461.t1 |
| chr3.3 | CDS | 72953912 | 72955201 | 72953912 | ID=cds.MS.gene75461.t1;Parent=MS.gene75461.t1 |
| Gene Sequence |
| Protein sequence |
