Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75627.t1 | XP_003601756.2 | 97.2 | 952 | 27 | 0 | 22 | 973 | 5 | 956 | 0.00E+00 | 1789.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75627.t1 | Q9FYG2 | 48.5 | 970 | 433 | 16 | 23 | 939 | 35 | 990 | 4.0e-224 | 779.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75627.t1 | G7JBF2 | 97.2 | 952 | 27 | 0 | 22 | 973 | 5 | 956 | 0.0e+00 | 1789.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene75627.t1 | TF | CAMTA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75627.t1 | MTR_3g085050 | 97.059 | 952 | 28 | 0 | 22 | 973 | 5 | 956 | 0.0 | 1941 |
MS.gene75627.t1 | MTR_3g085050 | 96.933 | 913 | 28 | 0 | 22 | 934 | 5 | 917 | 0.0 | 1855 |
MS.gene75627.t1 | MTR_8g080800 | 59.837 | 981 | 322 | 12 | 23 | 959 | 6 | 958 | 0.0 | 1112 |
MS.gene75627.t1 | MTR_2g008840 | 39.016 | 610 | 313 | 13 | 392 | 959 | 399 | 991 | 1.24e-123 | 400 |
MS.gene75627.t1 | MTR_2g008840 | 53.191 | 141 | 58 | 3 | 59 | 192 | 8 | 147 | 6.72e-36 | 147 |
MS.gene75627.t1 | MTR_2g008840 | 39.016 | 610 | 313 | 13 | 392 | 959 | 439 | 1031 | 1.47e-123 | 401 |
MS.gene75627.t1 | MTR_2g008840 | 49.718 | 177 | 81 | 3 | 23 | 192 | 12 | 187 | 6.19e-43 | 170 |
MS.gene75627.t1 | MTR_4g121840 | 31.917 | 965 | 549 | 29 | 25 | 952 | 26 | 919 | 8.35e-123 | 397 |
MS.gene75627.t1 | MTR_8g090205 | 39.383 | 551 | 298 | 8 | 403 | 928 | 344 | 883 | 9.63e-115 | 375 |
MS.gene75627.t1 | MTR_8g090205 | 39.383 | 551 | 298 | 8 | 403 | 928 | 344 | 883 | 1.26e-114 | 374 |
MS.gene75627.t1 | MTR_8g090205 | 39.383 | 551 | 298 | 8 | 403 | 928 | 503 | 1042 | 1.19e-113 | 376 |
MS.gene75627.t1 | MTR_8g090205 | 48.503 | 167 | 82 | 2 | 25 | 188 | 12 | 177 | 1.69e-42 | 169 |
MS.gene75627.t1 | MTR_8g090205 | 39.383 | 551 | 298 | 8 | 403 | 928 | 501 | 1040 | 1.35e-113 | 375 |
MS.gene75627.t1 | MTR_8g090205 | 48.521 | 169 | 83 | 2 | 23 | 188 | 8 | 175 | 2.04e-43 | 172 |
MS.gene75627.t1 | MTR_8g090205 | 39.383 | 551 | 298 | 8 | 403 | 928 | 501 | 1040 | 1.72e-113 | 375 |
MS.gene75627.t1 | MTR_8g090205 | 48.521 | 169 | 83 | 2 | 23 | 188 | 8 | 175 | 2.29e-43 | 171 |
MS.gene75627.t1 | MTR_8g090205 | 39.383 | 551 | 298 | 8 | 403 | 928 | 503 | 1042 | 1.80e-113 | 375 |
MS.gene75627.t1 | MTR_8g090205 | 48.503 | 167 | 82 | 2 | 25 | 188 | 12 | 177 | 1.90e-42 | 169 |
MS.gene75627.t1 | MTR_4g121840 | 31.926 | 924 | 521 | 29 | 66 | 952 | 37 | 889 | 6.04e-113 | 369 |
MS.gene75627.t1 | MTR_4g094215 | 37.564 | 583 | 294 | 14 | 392 | 928 | 426 | 984 | 2.30e-109 | 363 |
MS.gene75627.t1 | MTR_4g094215 | 49.630 | 135 | 68 | 0 | 20 | 154 | 9 | 143 | 4.54e-38 | 154 |
MS.gene75627.t1 | MTR_4g094215 | 37.564 | 583 | 294 | 14 | 392 | 928 | 426 | 984 | 2.32e-109 | 363 |
MS.gene75627.t1 | MTR_4g094215 | 49.630 | 135 | 68 | 0 | 20 | 154 | 9 | 143 | 4.63e-38 | 154 |
MS.gene75627.t1 | MTR_2g008840 | 38.025 | 476 | 249 | 10 | 392 | 837 | 439 | 898 | 1.08e-89 | 306 |
MS.gene75627.t1 | MTR_2g008840 | 49.718 | 177 | 81 | 3 | 23 | 192 | 12 | 187 | 4.59e-43 | 170 |
MS.gene75627.t1 | MTR_8g090205 | 38.053 | 452 | 254 | 6 | 403 | 838 | 503 | 944 | 1.35e-86 | 299 |
MS.gene75627.t1 | MTR_8g090205 | 58.197 | 122 | 51 | 0 | 25 | 146 | 12 | 133 | 1.62e-42 | 168 |
MS.gene75627.t1 | MTR_4g094215 | 35.197 | 483 | 253 | 12 | 392 | 837 | 426 | 885 | 3.80e-80 | 280 |
MS.gene75627.t1 | MTR_4g094215 | 49.630 | 135 | 68 | 0 | 20 | 154 | 9 | 143 | 3.82e-38 | 154 |
MS.gene75627.t1 | MTR_2g034650 | 33.157 | 567 | 326 | 14 | 392 | 925 | 339 | 885 | 5.40e-78 | 274 |
MS.gene75627.t1 | MTR_2g034650 | 52.027 | 148 | 69 | 1 | 25 | 172 | 25 | 170 | 5.51e-40 | 160 |
MS.gene75627.t1 | MTR_8g090200 | 45.161 | 93 | 48 | 1 | 405 | 494 | 315 | 407 | 1.89e-19 | 92.4 |
MS.gene75627.t1 | MTR_4g123740 | 49.153 | 59 | 29 | 1 | 87 | 145 | 6 | 63 | 4.34e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75627.t1 | AT1G67310 | 48.817 | 1014 | 425 | 23 | 22 | 972 | 34 | 1016 | 0.0 | 832 |
MS.gene75627.t1 | AT5G09410 | 37.198 | 621 | 321 | 15 | 396 | 968 | 281 | 880 | 4.37e-114 | 372 |
MS.gene75627.t1 | AT5G09410 | 37.258 | 620 | 322 | 15 | 396 | 968 | 402 | 1001 | 4.75e-113 | 372 |
MS.gene75627.t1 | AT5G09410 | 52.632 | 133 | 63 | 0 | 22 | 154 | 14 | 146 | 5.28e-41 | 164 |
MS.gene75627.t1 | AT5G09410 | 37.258 | 620 | 322 | 15 | 396 | 968 | 384 | 983 | 5.82e-113 | 372 |
MS.gene75627.t1 | AT5G09410 | 52.632 | 133 | 63 | 0 | 22 | 154 | 14 | 146 | 6.04e-41 | 164 |
MS.gene75627.t1 | AT5G09410 | 37.258 | 620 | 322 | 15 | 396 | 968 | 461 | 1060 | 2.75e-112 | 372 |
MS.gene75627.t1 | AT5G09410 | 54.400 | 125 | 52 | 1 | 22 | 141 | 73 | 197 | 3.51e-37 | 152 |
MS.gene75627.t1 | AT5G64220 | 39.216 | 561 | 299 | 14 | 396 | 926 | 451 | 999 | 3.96e-112 | 371 |
MS.gene75627.t1 | AT5G64220 | 47.879 | 165 | 84 | 1 | 23 | 185 | 12 | 176 | 1.85e-43 | 172 |
MS.gene75627.t1 | AT5G64220 | 39.216 | 561 | 299 | 14 | 396 | 926 | 451 | 999 | 3.96e-112 | 371 |
MS.gene75627.t1 | AT5G64220 | 47.879 | 165 | 84 | 1 | 23 | 185 | 12 | 176 | 1.85e-43 | 172 |
MS.gene75627.t1 | AT2G22300 | 38.156 | 553 | 297 | 10 | 396 | 928 | 396 | 923 | 8.50e-109 | 360 |
MS.gene75627.t1 | AT2G22300 | 52.066 | 121 | 57 | 1 | 70 | 189 | 1 | 121 | 7.18e-32 | 134 |
MS.gene75627.t1 | AT2G22300 | 38.172 | 558 | 299 | 11 | 392 | 928 | 449 | 981 | 2.77e-108 | 360 |
MS.gene75627.t1 | AT2G22300 | 46.429 | 168 | 89 | 1 | 23 | 189 | 12 | 179 | 1.34e-42 | 169 |
MS.gene75627.t1 | AT2G22300 | 38.172 | 558 | 299 | 11 | 392 | 928 | 449 | 981 | 2.77e-108 | 360 |
MS.gene75627.t1 | AT2G22300 | 46.429 | 168 | 89 | 1 | 23 | 189 | 12 | 179 | 1.34e-42 | 169 |
MS.gene75627.t1 | AT3G16940 | 33.046 | 581 | 335 | 14 | 390 | 941 | 262 | 817 | 3.91e-76 | 267 |
MS.gene75627.t1 | AT3G16940 | 52.414 | 145 | 66 | 2 | 29 | 173 | 1 | 142 | 3.02e-39 | 157 |
MS.gene75627.t1 | AT3G16940 | 33.046 | 581 | 335 | 14 | 390 | 941 | 289 | 844 | 5.73e-76 | 267 |
MS.gene75627.t1 | AT3G16940 | 51.007 | 149 | 70 | 2 | 25 | 173 | 24 | 169 | 1.25e-39 | 159 |
MS.gene75627.t1 | AT3G16940 | 31.435 | 474 | 275 | 12 | 390 | 836 | 289 | 739 | 2.48e-52 | 197 |
MS.gene75627.t1 | AT3G16940 | 51.007 | 149 | 70 | 2 | 25 | 173 | 24 | 169 | 7.22e-40 | 159 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATTGTAAATTTCTGTTTC+TGG | 0.128293 | 3.3:-71075583 | None:intergenic |
CATCCCGAGGTTCTTGAATT+TGG | 0.192741 | 3.3:-71075538 | None:intergenic |
TATAATCCCTTGCTCTTTCT+TGG | 0.193263 | 3.3:-71076887 | None:intergenic |
GGGATTATACACATAGTTTC+TGG | 0.215272 | 3.3:+71076901 | MS.gene75627:CDS |
AATTTCATGCTCATTATAAA+AGG | 0.224864 | 3.3:-71071049 | None:intergenic |
TGAGTTTCTATTGAAGAATA+TGG | 0.231372 | 3.3:-71075473 | None:intergenic |
GCCTCCACCACTTGTCTAAA+TGG | 0.241617 | 3.3:+71078014 | MS.gene75627:CDS |
TCATTGGCATAACAATATTC+TGG | 0.250713 | 3.3:-71075617 | None:intergenic |
TTCGAAAAGATGGTCATAAT+TGG | 0.253911 | 3.3:+71069051 | MS.gene75627:CDS |
AATGGATATGTCACCGGTTT+AGG | 0.257839 | 3.3:+71078032 | MS.gene75627:CDS |
TTGCATTCACTGTAATGTTT+TGG | 0.270778 | 3.3:+71076570 | MS.gene75627:CDS |
CAGTCCCTTGTGCCCATTGC+TGG | 0.272292 | 3.3:-71077730 | None:intergenic |
GAAACGCCTCTATCTTCTTT+TGG | 0.274448 | 3.3:+71075244 | MS.gene75627:CDS |
TTGAAGAATATGGAGAAAAT+TGG | 0.278554 | 3.3:-71075463 | None:intergenic |
GTTTCCAGAGGCGAAGTTAT+TGG | 0.289983 | 3.3:+71069722 | MS.gene75627:CDS |
CAACCATATGATGGATATAA+TGG | 0.292630 | 3.3:+71071105 | MS.gene75627:CDS |
TCTACCTGGGCTTGTATGTT+TGG | 0.292828 | 3.3:+71076391 | MS.gene75627:CDS |
GTGCATTACTTCAGGAAATA+AGG | 0.299775 | 3.3:+71076498 | MS.gene75627:CDS |
CCATTTGGATCTTGTGAACT+TGG | 0.310113 | 3.3:-71077684 | None:intergenic |
GAGGCTCCGTCCCATCTTCT+TGG | 0.324091 | 3.3:+71076463 | MS.gene75627:CDS |
TCAAGCTCAGAAGAATCTTT+AGG | 0.325777 | 3.3:-71077822 | None:intergenic |
GGCAATACAAGCTAATGATA+TGG | 0.326426 | 3.3:+71078418 | MS.gene75627:CDS |
CTAGGAGAGCATCTATAATA+TGG | 0.330922 | 3.3:-71076741 | None:intergenic |
TGCATCTTCATCTCGTTCAT+TGG | 0.331556 | 3.3:-71076851 | None:intergenic |
AGTTCCTGCTGAAATAATTC+AGG | 0.333245 | 3.3:+71076423 | MS.gene75627:CDS |
ATAACAGTTCTTCTGGACTA+TGG | 0.334037 | 3.3:-71076606 | None:intergenic |
CACAACTGAGAATGGGGTTC+AGG | 0.337492 | 3.3:-71076942 | None:intergenic |
GCATCTATTGCGGCCAGCAA+TGG | 0.343835 | 3.3:+71077717 | MS.gene75627:CDS |
CTTCATTGGGCTGCACGGTT+TGG | 0.345093 | 3.3:+71077006 | MS.gene75627:CDS |
ACAAGTAATAACAGTTCTTC+TGG | 0.345367 | 3.3:-71076613 | None:intergenic |
CCTCTCTGCTTCGATTATAA+AGG | 0.347695 | 3.3:+71076654 | MS.gene75627:CDS |
AACTTAATTGTTCCTCCAAT+TGG | 0.352792 | 3.3:-71070996 | None:intergenic |
GCCTCCCCTCGGATTCTACC+TGG | 0.353045 | 3.3:+71076377 | MS.gene75627:CDS |
CGCACAAGCTCTGCGCCAAT+TGG | 0.355249 | 3.3:+71070981 | MS.gene75627:CDS |
TCCTTGTATGCGTGTTGTTT+TGG | 0.357909 | 3.3:-71074818 | None:intergenic |
GGGAAAATCGGTGAACTTGC+AGG | 0.359647 | 3.3:-71068852 | None:intergenic |
TATGGTTGTTTATGATCATC+TGG | 0.363053 | 3.3:-71071090 | None:intergenic |
TTCACATGAATCACCAACTA+TGG | 0.363538 | 3.3:-71070866 | None:intergenic |
CATCTATTGCGGCCAGCAAT+GGG | 0.366299 | 3.3:+71077718 | MS.gene75627:CDS |
GGTGGGGTGTATCCGGTAAC+TGG | 0.366525 | 3.3:-71075293 | None:intergenic |
CTCCAGTCCTGGGTTCTTAG+AGG | 0.368654 | 3.3:+71070903 | MS.gene75627:CDS |
ATTGCTGCTGGTGCATCTGC+TGG | 0.368996 | 3.3:+71077648 | MS.gene75627:CDS |
GATATGGGCAGTTGGAATCT+TGG | 0.378012 | 3.3:+71078434 | MS.gene75627:CDS |
GTGGCATTGGTGGATATGTT+AGG | 0.378824 | 3.3:+71078054 | MS.gene75627:CDS |
ATGATTTATATCAATTTCCT+TGG | 0.379049 | 3.3:+71079145 | MS.gene75627:CDS |
ATGGATGTTGTCTCAGGGTT+TGG | 0.382049 | 3.3:-71070847 | None:intergenic |
TGTTACCATGAGGCTGGTTA+AGG | 0.382153 | 3.3:-71068874 | None:intergenic |
GTATCCGGTAACTGGTTTCC+TGG | 0.383094 | 3.3:-71075285 | None:intergenic |
CTTGACCATGATTGCCCTGC+TGG | 0.384698 | 3.3:+71074728 | MS.gene75627:CDS |
GTTGCTCTGTGCATTACTTC+AGG | 0.384723 | 3.3:+71076490 | MS.gene75627:CDS |
GTTCCATTATATCCATCATA+TGG | 0.384932 | 3.3:-71071108 | None:intergenic |
ATGGATGGACTGCCCTTCAT+TGG | 0.385897 | 3.3:+71076992 | MS.gene75627:CDS |
CCAACTATGGATGTTGTCTC+AGG | 0.386456 | 3.3:-71070853 | None:intergenic |
CTTGTTTGCAAATGAGGACT+TGG | 0.388891 | 3.3:-71074792 | None:intergenic |
TGCTAAGGTGGCGGAGAAAA+CGG | 0.391461 | 3.3:+71078466 | MS.gene75627:CDS |
ACAGTTCTCATCATTATTGC+TGG | 0.392059 | 3.3:-71075314 | None:intergenic |
GAGGTTCTTGAATTTGGCTT+TGG | 0.394026 | 3.3:-71075532 | None:intergenic |
CATGTGTAGGTGATCATTGT+TGG | 0.398565 | 3.3:+71076343 | MS.gene75627:intron |
TCCACCAATGCCACCTAAAC+CGG | 0.398700 | 3.3:-71078045 | None:intergenic |
GTTAATTTCCGTGATATCAA+TGG | 0.399308 | 3.3:+71076973 | MS.gene75627:CDS |
AGAAGCGCATGAACGGCTTA+AGG | 0.406373 | 3.3:+71069103 | MS.gene75627:CDS |
GCTTGTATTGCCTCCGAGTC+TGG | 0.406666 | 3.3:-71078407 | None:intergenic |
TGGTAACTTGTTTGCAAATG+AGG | 0.409912 | 3.3:-71074798 | None:intergenic |
ATACACATAGTTTCTGGATT+GGG | 0.416266 | 3.3:+71076907 | MS.gene75627:CDS |
GTGAACCTTTGTTGCCTCAT+TGG | 0.418858 | 3.3:-71075633 | None:intergenic |
AGAAAGCAGATGATGATTCA+TGG | 0.418980 | 3.3:+71076716 | MS.gene75627:CDS |
GATGGATATAATGGAACAAA+AGG | 0.419267 | 3.3:+71071114 | MS.gene75627:CDS |
AATCAGAATTTCTCCAGTCC+TGG | 0.422608 | 3.3:+71070892 | MS.gene75627:CDS |
ATGCGTTTCTTTCGAAAAGA+TGG | 0.423560 | 3.3:+71069041 | MS.gene75627:CDS |
AAGGATGATAGCTCAGAATC+TGG | 0.430655 | 3.3:+71076673 | MS.gene75627:CDS |
TATTGCTGGTGGGGTGTATC+CGG | 0.431270 | 3.3:-71075300 | None:intergenic |
TTACAGGGGACATCCAATTC+TGG | 0.432848 | 3.3:+71070772 | MS.gene75627:intron |
TTCTCATCATTATTGCTGGT+GGG | 0.433346 | 3.3:-71075310 | None:intergenic |
CAGCATCTCTGTCCAAGATA+AGG | 0.435726 | 3.3:-71074762 | None:intergenic |
TGGATGGACTGCCCTTCATT+GGG | 0.436126 | 3.3:+71076993 | MS.gene75627:CDS |
GGACTGGAGAAATTCTGATT+AGG | 0.437165 | 3.3:-71070889 | None:intergenic |
TGGCAACACGAGTGATGAAA+TGG | 0.437603 | 3.3:+71079056 | MS.gene75627:CDS |
TGCAGCAATTCAAAAGGCTT+TGG | 0.437608 | 3.3:+71078581 | MS.gene75627:CDS |
CTGCCCTTCATTGGGCTGCA+CGG | 0.438440 | 3.3:+71077001 | MS.gene75627:CDS |
CTTATCTTGGACAGAGATGC+TGG | 0.440239 | 3.3:+71074763 | MS.gene75627:CDS |
CATTGGCATAACAATATTCT+GGG | 0.440294 | 3.3:-71075616 | None:intergenic |
CAGCAATGGGCACAAGGGAC+TGG | 0.440405 | 3.3:+71077731 | MS.gene75627:CDS |
GTTGCTTCACTTATTGCTGC+TGG | 0.440412 | 3.3:+71077636 | MS.gene75627:CDS |
ATTACAGTGAATGCAACTAT+TGG | 0.441063 | 3.3:-71076563 | None:intergenic |
AAAATGTAAAGCACTTCTAT+AGG | 0.441324 | 3.3:-71068815 | None:intergenic |
ATTCATGCCACAACTGAGAA+TGG | 0.444168 | 3.3:-71076950 | None:intergenic |
TCAGGCAGCTGCACGTATAC+AGG | 0.444713 | 3.3:+71077944 | MS.gene75627:CDS |
CATCAGTATAATCGCATGCT+TGG | 0.446008 | 3.3:+71078642 | MS.gene75627:CDS |
ATATTTCTTCTGAATTGATA+AGG | 0.446959 | 3.3:-71078102 | None:intergenic |
ATGAATTTACGTTGCCAACT+AGG | 0.447557 | 3.3:-71076759 | None:intergenic |
TTCATGCCACAACTGAGAAT+GGG | 0.447886 | 3.3:-71076949 | None:intergenic |
TCTGGTTCAGCGAATGCAAC+AGG | 0.449281 | 3.3:-71071072 | None:intergenic |
CCAACCAGGAAACCAGTTAC+CGG | 0.462646 | 3.3:+71075281 | MS.gene75627:CDS |
CAACTTCTGTGGATGATGCT+TGG | 0.463627 | 3.3:+71079091 | MS.gene75627:CDS |
TATACACATAGTTTCTGGAT+TGG | 0.464836 | 3.3:+71076906 | MS.gene75627:CDS |
GTTTGGGCAGGCTCATGTGA+GGG | 0.465902 | 3.3:+71078380 | MS.gene75627:intron |
CAAACCGTGCAGCCCAATGA+AGG | 0.466086 | 3.3:-71077005 | None:intergenic |
TTCAGAAGAAATATAGAGGC+TGG | 0.466525 | 3.3:+71078111 | MS.gene75627:CDS |
AAGAGAAATGATTGCCAACC+AGG | 0.467341 | 3.3:+71075267 | MS.gene75627:CDS |
GAGCTACGACTCTGACTAAA+CGG | 0.468229 | 3.3:-71070814 | None:intergenic |
GTGCACATTCTTTCAGAAAA+CGG | 0.468978 | 3.3:+71077976 | MS.gene75627:CDS |
ATCCTTTCTCTGCCTCCCCT+CGG | 0.469219 | 3.3:+71076366 | MS.gene75627:CDS |
TGCTGTCAGAAATGCAGCTC+AGG | 0.471697 | 3.3:+71077926 | MS.gene75627:CDS |
TCTCTTCCAAAAGAAGATAG+AGG | 0.474103 | 3.3:-71075250 | None:intergenic |
TTCTGGATTGGGTTTCGAGT+GGG | 0.474526 | 3.3:+71076918 | MS.gene75627:CDS |
GAGCAACCTTTCCAAGAAGA+TGG | 0.475271 | 3.3:-71076474 | None:intergenic |
ACAACTGAGAATGGGGTTCA+GGG | 0.477876 | 3.3:-71076941 | None:intergenic |
ATCAGTATAATCGCATGCTT+GGG | 0.478091 | 3.3:+71078643 | MS.gene75627:CDS |
GCTAAGGTGGCGGAGAAAAC+GGG | 0.481096 | 3.3:+71078467 | MS.gene75627:CDS |
TTCAAGAAGCTAAGAAAAGA+TGG | 0.482062 | 3.3:+71068786 | MS.gene75627:CDS |
GTTACCATGAGGCTGGTTAA+GGG | 0.482952 | 3.3:-71068873 | None:intergenic |
CTTGGAATATTGATGATGCT+TGG | 0.484389 | 3.3:+71079109 | MS.gene75627:CDS |
CATGCCCAGCAGGGCAATCA+TGG | 0.486673 | 3.3:-71074733 | None:intergenic |
GTTGGCAACGTAAATTCATC+TGG | 0.487682 | 3.3:+71076763 | MS.gene75627:CDS |
GTTCTCATCATTATTGCTGG+TGG | 0.487995 | 3.3:-71075311 | None:intergenic |
AGGCTGGTTAAGGGGAAAAT+CGG | 0.489276 | 3.3:-71068864 | None:intergenic |
ATTATAGATGCTCTCCTAGT+TGG | 0.490367 | 3.3:+71076745 | MS.gene75627:CDS |
GCAATACAAGCTAATGATAT+GGG | 0.490598 | 3.3:+71078419 | MS.gene75627:CDS |
CCGGTAACTGGTTTCCTGGT+TGG | 0.491923 | 3.3:-71075281 | None:intergenic |
ATCCGAGGGGAGGCAGAGAA+AGG | 0.494394 | 3.3:-71076368 | None:intergenic |
TGAAGGATAAGCTGCGGCAC+TGG | 0.500111 | 3.3:+71076815 | MS.gene75627:CDS |
TCAATTCAGAAGAAATATAG+AGG | 0.500680 | 3.3:+71078107 | MS.gene75627:CDS |
ATTTCATGCTCATTATAAAA+GGG | 0.500746 | 3.3:-71071048 | None:intergenic |
ACATCCAATAACTTCGCCTC+TGG | 0.501649 | 3.3:-71069726 | None:intergenic |
TTGACCATGATTGCCCTGCT+GGG | 0.501670 | 3.3:+71074729 | MS.gene75627:CDS |
TTGTCTGACAGGACCAGAAT+TGG | 0.501922 | 3.3:-71070785 | None:intergenic |
ACAAGCTCTGCGCCAATTGG+AGG | 0.502276 | 3.3:+71070984 | MS.gene75627:CDS |
ATCAGAATTTCTCCAGTCCT+GGG | 0.502563 | 3.3:+71070893 | MS.gene75627:CDS |
AACGGTGATGATTGTCTGAC+AGG | 0.503327 | 3.3:-71070796 | None:intergenic |
AACTCTTTGATTTCACTGCA+TGG | 0.505283 | 3.3:-71076523 | None:intergenic |
GAAAAGATGGTCATAATTGG+CGG | 0.506642 | 3.3:+71069054 | MS.gene75627:CDS |
TAGTGAATCCTCATCATCAC+TGG | 0.508175 | 3.3:-71077889 | None:intergenic |
CCATCCTGAATTATTTCAGC+AGG | 0.510184 | 3.3:-71076427 | None:intergenic |
AGTACATGCAGCAATTCAAA+AGG | 0.511198 | 3.3:+71078575 | MS.gene75627:CDS |
TCTCATCATTATTGCTGGTG+GGG | 0.512311 | 3.3:-71075309 | None:intergenic |
ACCGGTTTAGGTGGCATTGG+TGG | 0.512373 | 3.3:+71078044 | MS.gene75627:CDS |
TCCATTTAGACAAGTGGTGG+AGG | 0.513397 | 3.3:-71078015 | None:intergenic |
TTTGGCACGGGTGATTTCCA+TGG | 0.514213 | 3.3:+71078599 | MS.gene75627:CDS |
AATGGGCACAAGGGACTGGC+AGG | 0.514534 | 3.3:+71077735 | MS.gene75627:CDS |
GATCATAAACAACCATATGA+TGG | 0.514783 | 3.3:+71071096 | MS.gene75627:CDS |
TGATTTATATCAATTTCCTT+GGG | 0.515469 | 3.3:+71079146 | MS.gene75627:CDS |
TAACAGTTCTTCTGGACTAT+GGG | 0.516224 | 3.3:-71076605 | None:intergenic |
CTCGTTCACATTCAACGCTA+CGG | 0.517307 | 3.3:-71066710 | None:intergenic |
AATTCAAAAGGCTTTGGCAC+GGG | 0.518782 | 3.3:+71078587 | MS.gene75627:CDS |
GGAACAATTAAGTTTGAATG+AGG | 0.519133 | 3.3:+71071005 | MS.gene75627:CDS |
AAGCTAATGATATGGGCAGT+TGG | 0.520016 | 3.3:+71078426 | MS.gene75627:CDS |
GTCACCGGTTTAGGTGGCAT+TGG | 0.523450 | 3.3:+71078041 | MS.gene75627:CDS |
TCCGTCCCATCTTCTTGGAA+AGG | 0.524865 | 3.3:+71076468 | MS.gene75627:CDS |
CTGAACCCCATTCTCAGTTG+TGG | 0.525541 | 3.3:+71076943 | MS.gene75627:CDS |
ATTGGGCTGCACGGTTTGGA+AGG | 0.532088 | 3.3:+71077010 | MS.gene75627:CDS |
GACCTCTAAGAACCCAGGAC+TGG | 0.539550 | 3.3:-71070905 | None:intergenic |
AAGCCAAATTCAAGAACCTC+GGG | 0.541578 | 3.3:+71075535 | MS.gene75627:CDS |
ACCAAAACAACACGCATACA+AGG | 0.542431 | 3.3:+71074817 | MS.gene75627:CDS |
CCAAGTTCACAAGATCCAAA+TGG | 0.543852 | 3.3:+71077684 | MS.gene75627:CDS |
TTTGGGCAGGCTCATGTGAG+GGG | 0.545911 | 3.3:+71078381 | MS.gene75627:intron |
CTGTTTCAGAAGCGCATGAA+CGG | 0.548045 | 3.3:+71069096 | MS.gene75627:CDS |
CCTCCCCTCGGATTCTACCT+GGG | 0.548614 | 3.3:+71076378 | MS.gene75627:CDS |
TGTCTAAATGGATATGTCAC+CGG | 0.549024 | 3.3:+71078026 | MS.gene75627:CDS |
AGTCATCATGAATAATGAAA+CGG | 0.549592 | 3.3:+71070939 | MS.gene75627:CDS |
TGCATCTGCTGGAGCAGTGA+CGG | 0.550109 | 3.3:+71077659 | MS.gene75627:CDS |
TGATGACGAGCATGCACAGA+AGG | 0.550115 | 3.3:-71078624 | None:intergenic |
GGATTCACTAAGAAATACCT+TGG | 0.550666 | 3.3:+71077902 | MS.gene75627:CDS |
TAAGAATGTTACCATGAGGC+TGG | 0.551040 | 3.3:-71068880 | None:intergenic |
TGCGGCCAGCAATGGGCACA+AGG | 0.551436 | 3.3:+71077725 | MS.gene75627:CDS |
TTACTTCCTCAAGACACTGG+TGG | 0.551472 | 3.3:+71075437 | MS.gene75627:CDS |
TGTTTGGGCAGGCTCATGTG+AGG | 0.551502 | 3.3:+71078379 | MS.gene75627:intron |
TGCATTTCTGACAGCACCCA+AGG | 0.555782 | 3.3:-71077919 | None:intergenic |
AACTTCGCCTCTGGAAACTA+CGG | 0.556762 | 3.3:-71069717 | None:intergenic |
TTTCCCCTTAACCAGCCTCA+TGG | 0.561765 | 3.3:+71068869 | MS.gene75627:CDS |
GGATATGTCACCGGTTTAGG+TGG | 0.565101 | 3.3:+71078035 | MS.gene75627:CDS |
CCTGAGACAACATCCATAGT+TGG | 0.569426 | 3.3:+71070853 | MS.gene75627:CDS |
CAATTCAAAAGGCTTTGGCA+CGG | 0.569867 | 3.3:+71078586 | MS.gene75627:CDS |
CTAAACTGCTACTATGCACA+TGG | 0.570887 | 3.3:+71069685 | MS.gene75627:CDS |
CAGTCCATCCATTGATATCA+CGG | 0.574632 | 3.3:-71076981 | None:intergenic |
ATGTGAGGGGTTACCAGACT+CGG | 0.574934 | 3.3:+71078394 | MS.gene75627:CDS |
GCATATTCAAGCTTGACTGT+TGG | 0.580162 | 3.3:+71075560 | MS.gene75627:CDS |
TTTCTGGATTGGGTTTCGAG+TGG | 0.582020 | 3.3:+71076917 | MS.gene75627:CDS |
AGCAACCTTTCCAAGAAGAT+GGG | 0.582697 | 3.3:-71076473 | None:intergenic |
AGAATATTGTTATGCCAATG+AGG | 0.584614 | 3.3:+71075619 | MS.gene75627:CDS |
ATGTTAGGCATAAAGGAAGA+AGG | 0.584665 | 3.3:+71066675 | MS.gene75627:CDS |
AATGAACGAGATGAAGATGC+AGG | 0.584800 | 3.3:+71076853 | MS.gene75627:CDS |
TCTTTGTCCAAGAAAGAGCA+AGG | 0.586979 | 3.3:+71076880 | MS.gene75627:CDS |
TGGACAAGGTTGTGCTAAGG+TGG | 0.588436 | 3.3:+71078454 | MS.gene75627:CDS |
TTACCATGAGGCTGGTTAAG+GGG | 0.590627 | 3.3:-71068872 | None:intergenic |
CTTTGTCCAAGAAAGAGCAA+GGG | 0.591267 | 3.3:+71076881 | MS.gene75627:CDS |
TCTTGAAGCCAGTGATGATG+AGG | 0.591725 | 3.3:+71077881 | MS.gene75627:CDS |
TGGGATGCGTCGTCGAGCCG+AGG | 0.592717 | 3.3:+71078662 | MS.gene75627:CDS |
TCTTCTTCAAGAGCTGCTGA+AGG | 0.595191 | 3.3:+71076798 | MS.gene75627:CDS |
ACCTTTCCAAGAAGATGGGA+CGG | 0.596282 | 3.3:-71076469 | None:intergenic |
AAAGCCAAATTCAAGAACCT+CGG | 0.596609 | 3.3:+71075534 | MS.gene75627:CDS |
AACACGGTTATCAACTTCTG+TGG | 0.597925 | 3.3:+71079080 | MS.gene75627:CDS |
GCATAAAGGAAGAAGGTCAA+GGG | 0.599802 | 3.3:+71066682 | MS.gene75627:CDS |
TTATGCCAATGAGGCAACAA+AGG | 0.601144 | 3.3:+71075628 | MS.gene75627:CDS |
GATTCACTAAGAAATACCTT+GGG | 0.601371 | 3.3:+71077903 | MS.gene75627:CDS |
AAACCGTGCAGCCCAATGAA+GGG | 0.601471 | 3.3:-71077004 | None:intergenic |
GACATATCCATTTAGACAAG+TGG | 0.602811 | 3.3:-71078021 | None:intergenic |
TCATCTGTCATCCCTCACAT+TGG | 0.603114 | 3.3:+71077785 | MS.gene75627:CDS |
CAACTATGGATGTTGTCTCA+GGG | 0.603209 | 3.3:-71070852 | None:intergenic |
ATTTCCGTGATATCAATGGA+TGG | 0.609222 | 3.3:+71076977 | MS.gene75627:CDS |
CCCAGGTAGAATCCGAGGGG+AGG | 0.609248 | 3.3:-71076378 | None:intergenic |
ACAAGGTTGTGCTAAGGTGG+CGG | 0.609415 | 3.3:+71078457 | MS.gene75627:CDS |
GTCACCAAACATACAAGCCC+AGG | 0.609877 | 3.3:-71076395 | None:intergenic |
TGGACTCCACCAGTGTCTTG+AGG | 0.610261 | 3.3:-71075443 | None:intergenic |
TAAAACTGCTGCATCTATTG+CGG | 0.610279 | 3.3:+71077707 | MS.gene75627:CDS |
ACAAGCCCAGGTAGAATCCG+AGG | 0.613314 | 3.3:-71076383 | None:intergenic |
ATATCCATTTAGACAAGTGG+TGG | 0.614907 | 3.3:-71078018 | None:intergenic |
TCATGCTCATTATAAAAGGG+AGG | 0.614946 | 3.3:-71071045 | None:intergenic |
ACATTCTTTCAGAAAACGGA+TGG | 0.616326 | 3.3:+71077980 | MS.gene75627:CDS |
GGCATAAAGGAAGAAGGTCA+AGG | 0.619862 | 3.3:+71066681 | MS.gene75627:CDS |
ATTCTCTTACAGGCTGAACA+TGG | 0.626364 | 3.3:+71079036 | MS.gene75627:intron |
TCTTGGACAAGGTTGTGCTA+AGG | 0.628079 | 3.3:+71078451 | MS.gene75627:CDS |
GAAGGCTAGAGCGCTTCCCA+AGG | 0.628496 | 3.3:-71079162 | None:intergenic |
CAAGCCCAGGTAGAATCCGA+GGG | 0.628679 | 3.3:-71076382 | None:intergenic |
AGCATGCACAGAAGGGACCA+TGG | 0.630235 | 3.3:-71078616 | None:intergenic |
TATTCTTCAATAGAAACTCA+AGG | 0.630493 | 3.3:+71075476 | MS.gene75627:CDS |
GGCAGTTGGAATCTTGGACA+AGG | 0.634216 | 3.3:+71078440 | MS.gene75627:CDS |
TCATGCCACAACTGAGAATG+GGG | 0.637586 | 3.3:-71076948 | None:intergenic |
GCGGCCAGCAATGGGCACAA+GGG | 0.639651 | 3.3:+71077726 | MS.gene75627:CDS |
GGATGGCGTAATCTGTTGTG+AGG | 0.646267 | 3.3:+71076444 | MS.gene75627:CDS |
CGAGTGATGAAATGGAAACA+CGG | 0.646958 | 3.3:+71079064 | MS.gene75627:CDS |
CTGCTACTATGCACATGGAG+AGG | 0.651839 | 3.3:+71069690 | MS.gene75627:CDS |
AGGAGAACCGTAGTTTCCAG+AGG | 0.651888 | 3.3:+71069710 | MS.gene75627:CDS |
AGCTGCTGAAGGATAAGCTG+CGG | 0.660445 | 3.3:+71076809 | MS.gene75627:CDS |
GATGACGAGCATGCACAGAA+GGG | 0.661662 | 3.3:-71078623 | None:intergenic |
ATTCATGATGACTATATCCG+AGG | 0.671055 | 3.3:-71070929 | None:intergenic |
CATAAAGGAAGAAGGTCAAG+GGG | 0.672134 | 3.3:+71066683 | MS.gene75627:CDS |
AAGCTTGAATATGCATCCCG+AGG | 0.674899 | 3.3:-71075551 | None:intergenic |
GAGGTGACCTCTAAGAACCC+AGG | 0.676062 | 3.3:-71070910 | None:intergenic |
CCTGCTGAAATAATTCAGGA+TGG | 0.681187 | 3.3:+71076427 | MS.gene75627:CDS |
CCTTTATAATCGAAGCAGAG+AGG | 0.688981 | 3.3:-71076654 | None:intergenic |
GCATTACAGAGAAACAAATG+AGG | 0.696255 | 3.3:+71070116 | MS.gene75627:CDS |
AGGTGGCGGAGAAAACGGGT+TGG | 0.696971 | 3.3:+71078471 | MS.gene75627:CDS |
TGGGTTCTTAGAGGTCACCT+CGG | 0.705452 | 3.3:+71070912 | MS.gene75627:CDS |
GATGATAGCTCAGAATCTGG+AGG | 0.706195 | 3.3:+71076676 | MS.gene75627:CDS |
ATTGGCATAACAATATTCTG+GGG | 0.709888 | 3.3:-71075615 | None:intergenic |
TGAGGGGTTACCAGACTCGG+AGG | 0.712583 | 3.3:+71078397 | MS.gene75627:CDS |
AAGCCCAGGTAGAATCCGAG+GGG | 0.750615 | 3.3:-71076381 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 71066675 | 71079179 | 71066675 | ID=MS.gene75627 |
chr3.3 | mRNA | 71066675 | 71079179 | 71066675 | ID=MS.gene75627.t1;Parent=MS.gene75627 |
chr3.3 | exon | 71066675 | 71066735 | 71066675 | ID=MS.gene75627.t1.exon1;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71066675 | 71066735 | 71066675 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71068759 | 71068890 | 71068759 | ID=MS.gene75627.t1.exon2;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71068759 | 71068890 | 71068759 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71069009 | 71069124 | 71069009 | ID=MS.gene75627.t1.exon3;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71069009 | 71069124 | 71069009 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71069667 | 71069755 | 71069667 | ID=MS.gene75627.t1.exon4;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71069667 | 71069755 | 71069667 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71070092 | 71070137 | 71070092 | ID=MS.gene75627.t1.exon5;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71070092 | 71070137 | 71070092 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71070778 | 71071135 | 71070778 | ID=MS.gene75627.t1.exon6;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71070778 | 71071135 | 71070778 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71074699 | 71074850 | 71074699 | ID=MS.gene75627.t1.exon7;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71074699 | 71074850 | 71074699 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71075244 | 71075334 | 71075244 | ID=MS.gene75627.t1.exon8;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71075244 | 71075334 | 71075244 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71075429 | 71075649 | 71075429 | ID=MS.gene75627.t1.exon9;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71075429 | 71075649 | 71075429 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71076352 | 71077031 | 71076352 | ID=MS.gene75627.t1.exon10;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71076352 | 71077031 | 71076352 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71077626 | 71078184 | 71077626 | ID=MS.gene75627.t1.exon11;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71077626 | 71078184 | 71077626 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71078390 | 71078683 | 71078390 | ID=MS.gene75627.t1.exon12;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71078390 | 71078683 | 71078390 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
chr3.3 | exon | 71079048 | 71079179 | 71079048 | ID=MS.gene75627.t1.exon13;Parent=MS.gene75627.t1 |
chr3.3 | CDS | 71079048 | 71079179 | 71079048 | ID=cds.MS.gene75627.t1;Parent=MS.gene75627.t1 |
Gene Sequence |
Protein sequence |