AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75794

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75794.t1 MTR_5g099040 62.187 320 57 10 16 335 24 279 6.53e-105 308
MS.gene75794.t1 MTR_5g062300 67.308 260 28 9 20 277 16 220 2.68e-94 280
MS.gene75794.t1 MTR_4g028610 33.684 190 84 4 127 310 227 380 4.40e-19 88.2
MS.gene75794.t1 MTR_4g109340 32.178 202 89 5 126 326 347 501 7.70e-19 87.4
MS.gene75794.t1 MTR_4g027440 29.787 188 74 3 123 310 216 345 4.07e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75794.t1 AT4G35280 42.164 268 78 5 37 291 71 274 2.70e-58 190
MS.gene75794.t1 AT2G17180 38.614 303 83 8 41 335 63 270 4.08e-51 171
MS.gene75794.t1 AT5G56200 34.066 182 72 6 125 306 340 473 1.20e-14 75.1
MS.gene75794.t1 AT1G02040 46.250 80 36 2 85 157 101 180 2.08e-11 64.7

Find 98 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCATCTGTTTCTGTTAC+TGG 0.131143 5.3:+80365625 MS.gene75794:CDS
GGTTTCTTGTTCTTGTTCTT+TGG 0.171298 5.3:-80365910 None:intergenic
AAAAGATGTCATTGGGAAAA+AGG 0.213817 5.3:+80366363 MS.gene75794:CDS
TCGTGTTGCAACAAAGTATT+TGG 0.254538 5.3:+80365979 MS.gene75794:CDS
GCAGCACCTTCCTGTTCTTC+TGG 0.259557 5.3:-80365859 None:intergenic
AGTTGTGGTCTTCTGAAATT+AGG 0.270404 5.3:-80365820 None:intergenic
ACCCCTCAAGGAATTGAAAT+TGG 0.276138 5.3:+80366108 MS.gene75794:CDS
CTCCCCTCAGCCTTGATTTG+AGG 0.284244 5.3:+80366565 MS.gene75794:CDS
CTCAGCCTTGATTTGAGGTT+GGG 0.292402 5.3:+80366570 MS.gene75794:CDS
CTGAATGCGGTAAGATATTC+TGG 0.313666 5.3:+80365728 MS.gene75794:CDS
CAAGGAATTGAAATTGGAAT+TGG 0.314485 5.3:+80366114 MS.gene75794:CDS
TCAGGAGGTGGTGGTGGAAA+AGG 0.369982 5.3:-80366513 None:intergenic
CCTCAGCCTTGATTTGAGGT+TGG 0.373861 5.3:+80366569 MS.gene75794:CDS
GTCTGAGGCACCATGATCAT+TGG 0.382607 5.3:-80366174 None:intergenic
ACTACTAGACTTGTTGTTGT+TGG 0.399673 5.3:-80366463 None:intergenic
AAGAAGAAGCGTAAGGAATT+CGG 0.417811 5.3:+80365649 MS.gene75794:CDS
GGAATTGAAATTGGAATTGG+AGG 0.436485 5.3:+80366117 MS.gene75794:CDS
GTGGTCACAAAAGATGTCAT+TGG 0.437408 5.3:+80366355 MS.gene75794:CDS
AAGCGTAAGGAATTCGGCTC+CGG 0.438803 5.3:+80365655 MS.gene75794:CDS
CAAAGTATTTGGATCTCATC+AGG 0.456499 5.3:+80365990 MS.gene75794:CDS
GCTGAGGGGAGAAGAAGAAT+CGG 0.458860 5.3:-80366553 None:intergenic
ATTCCTCTCCATTGACGCTC+AGG 0.461015 5.3:-80365787 None:intergenic
AATTCCTTGAGGGGTACTGC+TGG 0.461824 5.3:-80366100 None:intergenic
GTTGTTGTTGTTGCAACTGC+TGG 0.463828 5.3:-80365931 None:intergenic
GGTTATTGTTGTTGTTGTAT+TGG 0.464272 5.3:-80366061 None:intergenic
TGTTTGAGGGTATTCACCTC+TGG 0.465821 5.3:+80366321 MS.gene75794:CDS
TACCGCGACTCCAGAAGAAC+AGG 0.473036 5.3:+80365849 MS.gene75794:CDS
CAGGAGGTGGTGGTGGAAAA+GGG 0.474090 5.3:-80366512 None:intergenic
TTCCAATTTCAATTCCTTGA+GGG 0.480651 5.3:-80366110 None:intergenic
AACAATAACAATAACAATGT+TGG 0.482830 5.3:+80366219 MS.gene75794:CDS
TGGTCACAAAAGATGTCATT+GGG 0.485006 5.3:+80366356 MS.gene75794:CDS
TCCGGGGAATCATCATCATC+TGG 0.485557 5.3:+80365673 MS.gene75794:CDS
TCATCATCAGGAGGTGGTGG+TGG 0.489318 5.3:-80366519 None:intergenic
GGATGATGATCATCATCATC+AGG 0.494007 5.3:-80366531 None:intergenic
TCTGAGGCACCATGATCATT+GGG 0.496728 5.3:-80366173 None:intergenic
AGCGTAAGGAATTCGGCTCC+GGG 0.496896 5.3:+80365656 MS.gene75794:CDS
ATTGAAATTGGAATTGGAGG+AGG 0.508348 5.3:+80366120 MS.gene75794:CDS
CGATGACAACCCAATGATCA+TGG 0.510935 5.3:+80366164 MS.gene75794:CDS
TGGAAACGTGGAAGGGGAAG+CGG 0.512114 5.3:+80366242 MS.gene75794:CDS
GGATCTCATCAGGCACTTGG+AGG 0.512393 5.3:+80366000 MS.gene75794:CDS
GTTGTCATCCTGAGCGTCAA+TGG 0.514198 5.3:+80365779 MS.gene75794:CDS
AAAGTCCCAACCTCAAATCA+AGG 0.519574 5.3:-80366575 None:intergenic
ACAAGTGTAGCATATGTTTG+AGG 0.520240 5.3:+80366307 MS.gene75794:CDS
AATAACAATAACAATGTTGG+TGG 0.522015 5.3:+80366222 MS.gene75794:CDS
TTTGGATCTCATCAGGCACT+TGG 0.527004 5.3:+80365997 MS.gene75794:CDS
CCTCAGACTCGTGGTGGTGA+CGG 0.528908 5.3:+80366189 MS.gene75794:CDS
TCCAATTTCAATTCCTTGAG+GGG 0.531505 5.3:-80366109 None:intergenic
TCGAATGGTAATGTTGTTGA+TGG 0.537184 5.3:-80366399 None:intergenic
CTGAGGGGAGAAGAAGAATC+GGG 0.541339 5.3:-80366552 None:intergenic
TGTGGTCTTCTGAAATTAGG+AGG 0.542449 5.3:-80365817 None:intergenic
GCGGTAAGATATTCTGGTCA+TGG 0.544652 5.3:+80365734 MS.gene75794:CDS
ATCAGGCACTTGGAGGACAC+AGG 0.546807 5.3:+80366007 MS.gene75794:CDS
ACCAGATGATGATGATTCCC+CGG 0.553428 5.3:-80365674 None:intergenic
CAAGTGTAGCATATGTTTGA+GGG 0.557225 5.3:+80366308 MS.gene75794:CDS
TGCAACAACAACAACGGTGG+TGG 0.560440 5.3:+80365939 MS.gene75794:CDS
GTCTTCTGAAATTAGGAGGA+GGG 0.563842 5.3:-80365813 None:intergenic
CCAACCTCAAATCAAGGCTG+AGG 0.568598 5.3:-80366569 None:intergenic
TTCACCTCTGGACAAGCACT+CGG 0.569437 5.3:+80366333 MS.gene75794:CDS
TGTTGGTGGAAACGTGGAAG+GGG 0.573504 5.3:+80366236 MS.gene75794:CDS
GGTCTTCTGAAATTAGGAGG+AGG 0.578908 5.3:-80365814 None:intergenic
TCATCATCATCAGGAGGTGG+TGG 0.579076 5.3:-80366522 None:intergenic
TAATGTTGTTGATGGTGTGG+TGG 0.579959 5.3:-80366391 None:intergenic
TGCAGTTGCAGTTGCAGTTG+CGG 0.585594 5.3:-80366433 None:intergenic
GGCTAGTCACAAGAATGTCA+AGG 0.586833 5.3:+80366029 MS.gene75794:CDS
AATGTTGGTGGAAACGTGGA+AGG 0.586957 5.3:+80366234 MS.gene75794:CDS
AATAACGAAATCATAAGCAT+CGG 0.587279 5.3:+80366276 MS.gene75794:CDS
TACTGGTAAGAAGAAGCGTA+AGG 0.587512 5.3:+80365642 MS.gene75794:CDS
CAACCTCAAATCAAGGCTGA+GGG 0.588474 5.3:-80366568 None:intergenic
TAAGATATTCTGGTCATGGA+AGG 0.594766 5.3:+80365738 MS.gene75794:CDS
ATTCCAATTTCAATTCCTTG+AGG 0.595146 5.3:-80366111 None:intergenic
AACGAAATCATAAGCATCGG+AGG 0.603782 5.3:+80366279 MS.gene75794:CDS
CCGTCACCACCACGAGTCTG+AGG 0.606419 5.3:-80366189 None:intergenic
TTCCTGTTCTTCTGGAGTCG+CGG 0.607526 5.3:-80365851 None:intergenic
GAAATCATAAGCATCGGAGG+AGG 0.616674 5.3:+80366282 MS.gene75794:CDS
TGGACCAGCAGTACCCCTCA+AGG 0.619084 5.3:+80366096 MS.gene75794:CDS
TGATCATCATCATCAGGAGG+TGG 0.620196 5.3:-80366525 None:intergenic
TGGTAATGTTGTTGATGGTG+TGG 0.620418 5.3:-80366394 None:intergenic
ATGTTGGTGGAAACGTGGAA+GGG 0.632193 5.3:+80366235 MS.gene75794:CDS
GCTAGTCACAAGAATGTCAA+GGG 0.632503 5.3:+80366030 MS.gene75794:CDS
CATCCTGAGCGTCAATGGAG+AGG 0.633209 5.3:+80365784 MS.gene75794:CDS
TAACAATGTTGGTGGAAACG+TGG 0.636140 5.3:+80366230 MS.gene75794:CDS
GTCGCGGTATTGATGAGTTG+TGG 0.636172 5.3:-80365835 None:intergenic
GCTCGTAGTTGCACTGAATG+CGG 0.637940 5.3:+80365715 MS.gene75794:CDS
TCAGGCACTTGGAGGACACA+GGG 0.641355 5.3:+80366008 MS.gene75794:CDS
CAATAACCGCTTCTTCTACG+TGG 0.643180 5.3:+80366076 MS.gene75794:CDS
GCGGTAGAAGAAGAATCGAA+TGG 0.655654 5.3:-80366414 None:intergenic
GCTGGTCCACGTAGAAGAAG+CGG 0.656413 5.3:-80366082 None:intergenic
ATCATGGTGCCTCAGACTCG+TGG 0.664991 5.3:+80366180 MS.gene75794:CDS
ACCTCTGGACAAGCACTCGG+TGG 0.666232 5.3:+80366336 MS.gene75794:CDS
GAAACAGATGAAGAAGAACA+TGG 0.674084 5.3:-80365616 None:intergenic
AACCTCAAATCAAGGCTGAG+GGG 0.678963 5.3:-80366567 None:intergenic
TGATGATCATCATCATCAGG+AGG 0.687105 5.3:-80366528 None:intergenic
GCGTAAGGAATTCGGCTCCG+GGG 0.689557 5.3:+80365657 MS.gene75794:CDS
AGCAGTTGCAACAACAACAA+CGG 0.693090 5.3:+80365933 MS.gene75794:CDS
ACCACCGAGTGCTTGTCCAG+AGG 0.705617 5.3:-80366337 None:intergenic
ATGGTGCCTCAGACTCGTGG+TGG 0.717787 5.3:+80366183 MS.gene75794:CDS
GCGACTCCAGAAGAACAGGA+AGG 0.732274 5.3:+80365853 MS.gene75794:CDS
AGTTGCAACAACAACAACGG+TGG 0.749347 5.3:+80365936 MS.gene75794:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAACAATAACAATGT+TGG + chr5.3:80366219-80366238 MS.gene75794:CDS 20.0%
! AATAACAATAACAATGTTGG+TGG + chr5.3:80366222-80366241 MS.gene75794:CDS 25.0%
! AATAACGAAATCATAAGCAT+CGG + chr5.3:80366276-80366295 MS.gene75794:CDS 25.0%
AAAAGATGTCATTGGGAAAA+AGG + chr5.3:80366363-80366382 MS.gene75794:CDS 30.0%
AAAGATGTCATTGGGAAAAA+GGG + chr5.3:80366364-80366383 MS.gene75794:CDS 30.0%
ATTCCAATTTCAATTCCTTG+AGG - chr5.3:80366114-80366133 None:intergenic 30.0%
CAAGGAATTGAAATTGGAAT+TGG + chr5.3:80366114-80366133 MS.gene75794:CDS 30.0%
TTCCAATTTCAATTCCTTGA+GGG - chr5.3:80366113-80366132 None:intergenic 30.0%
! GGTTATTGTTGTTGTTGTAT+TGG - chr5.3:80366064-80366083 None:intergenic 30.0%
AAGATGTCATTGGGAAAAAG+GGG + chr5.3:80366365-80366384 MS.gene75794:CDS 35.0%
ACAAGTGTAGCATATGTTTG+AGG + chr5.3:80366307-80366326 MS.gene75794:CDS 35.0%
ATTGAAATTGGAATTGGAGG+AGG + chr5.3:80366120-80366139 MS.gene75794:CDS 35.0%
CAAGTGTAGCATATGTTTGA+GGG + chr5.3:80366308-80366327 MS.gene75794:CDS 35.0%
GAAACAGATGAAGAAGAACA+TGG - chr5.3:80365619-80365638 None:intergenic 35.0%
GGAATTGAAATTGGAATTGG+AGG + chr5.3:80366117-80366136 MS.gene75794:CDS 35.0%
GGTTTCTTGTTCTTGTTCTT+TGG - chr5.3:80365913-80365932 None:intergenic 35.0%
TAAGATATTCTGGTCATGGA+AGG + chr5.3:80365738-80365757 MS.gene75794:CDS 35.0%
TCCAATTTCAATTCCTTGAG+GGG - chr5.3:80366112-80366131 None:intergenic 35.0%
TGGTCACAAAAGATGTCATT+GGG + chr5.3:80366356-80366375 MS.gene75794:CDS 35.0%
! AAGAAGAAGCGTAAGGAATT+CGG + chr5.3:80365649-80365668 MS.gene75794:CDS 35.0%
! CAAAGTATTTGGATCTCATC+AGG + chr5.3:80365990-80366009 MS.gene75794:CDS 35.0%
! TCGAATGGTAATGTTGTTGA+TGG - chr5.3:80366402-80366421 None:intergenic 35.0%
! TCGTGTTGCAACAAAGTATT+TGG + chr5.3:80365979-80365998 MS.gene75794:CDS 35.0%
!! ACTACTAGACTTGTTGTTGT+TGG - chr5.3:80366466-80366485 None:intergenic 35.0%
!! AGTTGTGGTCTTCTGAAATT+AGG - chr5.3:80365823-80365842 None:intergenic 35.0%
!! TCTTCATCTGTTTCTGTTAC+TGG + chr5.3:80365625-80365644 MS.gene75794:CDS 35.0%
AAAGTCCCAACCTCAAATCA+AGG - chr5.3:80366578-80366597 None:intergenic 40.0%
ACCCCTCAAGGAATTGAAAT+TGG + chr5.3:80366108-80366127 MS.gene75794:CDS 40.0%
AGCAGTTGCAACAACAACAA+CGG + chr5.3:80365933-80365952 MS.gene75794:CDS 40.0%
CTGAATGCGGTAAGATATTC+TGG + chr5.3:80365728-80365747 MS.gene75794:CDS 40.0%
GCTAGTCACAAGAATGTCAA+GGG + chr5.3:80366030-80366049 MS.gene75794:CDS 40.0%
GGATGATGATCATCATCATC+AGG - chr5.3:80366534-80366553 None:intergenic 40.0%
GTGGTCACAAAAGATGTCAT+TGG + chr5.3:80366355-80366374 MS.gene75794:CDS 40.0%
TGATGATCATCATCATCAGG+AGG - chr5.3:80366531-80366550 None:intergenic 40.0%
! TAACAATGTTGGTGGAAACG+TGG + chr5.3:80366230-80366249 MS.gene75794:CDS 40.0%
! TACTGGTAAGAAGAAGCGTA+AGG + chr5.3:80365642-80365661 MS.gene75794:CDS 40.0%
!! AACGAAATCATAAGCATCGG+AGG + chr5.3:80366279-80366298 MS.gene75794:CDS 40.0%
!! GTCTTCTGAAATTAGGAGGA+GGG - chr5.3:80365816-80365835 None:intergenic 40.0%
!! TAATGTTGTTGATGGTGTGG+TGG - chr5.3:80366394-80366413 None:intergenic 40.0%
!! TGGTAATGTTGTTGATGGTG+TGG - chr5.3:80366397-80366416 None:intergenic 40.0%
!! TGTGGTCTTCTGAAATTAGG+AGG - chr5.3:80365820-80365839 None:intergenic 40.0%
AACCTCAAATCAAGGCTGAG+GGG - chr5.3:80366570-80366589 None:intergenic 45.0%
AGTTGCAACAACAACAACGG+TGG + chr5.3:80365936-80365955 MS.gene75794:CDS 45.0%
CAACCTCAAATCAAGGCTGA+GGG - chr5.3:80366571-80366590 None:intergenic 45.0%
CAATAACCGCTTCTTCTACG+TGG + chr5.3:80366076-80366095 MS.gene75794:CDS 45.0%
CGATGACAACCCAATGATCA+TGG + chr5.3:80366164-80366183 MS.gene75794:CDS 45.0%
GCGGTAAGATATTCTGGTCA+TGG + chr5.3:80365734-80365753 MS.gene75794:CDS 45.0%
GCGGTAGAAGAAGAATCGAA+TGG - chr5.3:80366417-80366436 None:intergenic 45.0%
TGATCATCATCATCAGGAGG+TGG - chr5.3:80366528-80366547 None:intergenic 45.0%
TTTGGATCTCATCAGGCACT+TGG + chr5.3:80365997-80366016 MS.gene75794:CDS 45.0%
! AATGTTGGTGGAAACGTGGA+AGG + chr5.3:80366234-80366253 MS.gene75794:CDS 45.0%
! ACCAGATGATGATGATTCCC+CGG - chr5.3:80365677-80365696 None:intergenic 45.0%
! ATGTTGGTGGAAACGTGGAA+GGG + chr5.3:80366235-80366254 MS.gene75794:CDS 45.0%
! CTCAGCCTTGATTTGAGGTT+GGG + chr5.3:80366570-80366589 MS.gene75794:CDS 45.0%
! GGCTAGTCACAAGAATGTCA+AGG + chr5.3:80366029-80366048 MS.gene75794:CDS 45.0%
! GTTGTTGTTGTTGCAACTGC+TGG - chr5.3:80365934-80365953 None:intergenic 45.0%
! TCTGAGGCACCATGATCATT+GGG - chr5.3:80366176-80366195 None:intergenic 45.0%
! TGGTCATGGAAGGCTCTTTT+CGG + chr5.3:80365748-80365767 MS.gene75794:CDS 45.0%
!! GAAATCATAAGCATCGGAGG+AGG + chr5.3:80366282-80366301 MS.gene75794:CDS 45.0%
!! GGTCTTCTGAAATTAGGAGG+AGG - chr5.3:80365817-80365836 None:intergenic 45.0%
!! TGTTTGAGGGTATTCACCTC+TGG + chr5.3:80366321-80366340 MS.gene75794:CDS 45.0%
AAGCGTAAGGAATTCGGCTC+CGG + chr5.3:80365655-80365674 MS.gene75794:CDS 50.0%
ATTCCTCTCCATTGACGCTC+AGG - chr5.3:80365790-80365809 None:intergenic 50.0%
CCAACCTCAAATCAAGGCTG+AGG - chr5.3:80366572-80366591 None:intergenic 50.0%
CTGAGGGGAGAAGAAGAATC+GGG - chr5.3:80366555-80366574 None:intergenic 50.0%
GCTCGTAGTTGCACTGAATG+CGG + chr5.3:80365715-80365734 MS.gene75794:CDS 50.0%
GCTGAGGGGAGAAGAAGAAT+CGG - chr5.3:80366556-80366575 None:intergenic 50.0%
GTTGTCATCCTGAGCGTCAA+TGG + chr5.3:80365779-80365798 MS.gene75794:CDS 50.0%
TCATCATCATCAGGAGGTGG+TGG - chr5.3:80366525-80366544 None:intergenic 50.0%
TCCGGGGAATCATCATCATC+TGG + chr5.3:80365673-80365692 MS.gene75794:CDS 50.0%
TGCAACAACAACAACGGTGG+TGG + chr5.3:80365939-80365958 MS.gene75794:CDS 50.0%
TGCAGTTGCAGTTGCAGTTG+CGG - chr5.3:80366436-80366455 None:intergenic 50.0%
TTCACCTCTGGACAAGCACT+CGG + chr5.3:80366333-80366352 MS.gene75794:CDS 50.0%
! CCTCAGCCTTGATTTGAGGT+TGG + chr5.3:80366569-80366588 MS.gene75794:CDS 50.0%
! GTCTGAGGCACCATGATCAT+TGG - chr5.3:80366177-80366196 None:intergenic 50.0%
! TGTTGGTGGAAACGTGGAAG+GGG + chr5.3:80366236-80366255 MS.gene75794:CDS 50.0%
!! AATTCCTTGAGGGGTACTGC+TGG - chr5.3:80366103-80366122 None:intergenic 50.0%
!! GTCGCGGTATTGATGAGTTG+TGG - chr5.3:80365838-80365857 None:intergenic 50.0%
!! TTCCTGTTCTTCTGGAGTCG+CGG - chr5.3:80365854-80365873 None:intergenic 50.0%
AGCGTAAGGAATTCGGCTCC+GGG + chr5.3:80365656-80365675 MS.gene75794:CDS 55.0%
ATCAGGCACTTGGAGGACAC+AGG + chr5.3:80366007-80366026 MS.gene75794:CDS 55.0%
ATCATGGTGCCTCAGACTCG+TGG + chr5.3:80366180-80366199 MS.gene75794:CDS 55.0%
CATCCTGAGCGTCAATGGAG+AGG + chr5.3:80365784-80365803 MS.gene75794:CDS 55.0%
GCAGCACCTTCCTGTTCTTC+TGG - chr5.3:80365862-80365881 None:intergenic 55.0%
GCGACTCCAGAAGAACAGGA+AGG + chr5.3:80365853-80365872 MS.gene75794:CDS 55.0%
GCTGGTCCACGTAGAAGAAG+CGG - chr5.3:80366085-80366104 None:intergenic 55.0%
GGATCTCATCAGGCACTTGG+AGG + chr5.3:80366000-80366019 MS.gene75794:CDS 55.0%
TACCGCGACTCCAGAAGAAC+AGG + chr5.3:80365849-80365868 MS.gene75794:CDS 55.0%
TCAGGCACTTGGAGGACACA+GGG + chr5.3:80366008-80366027 MS.gene75794:CDS 55.0%
TGGAAACGTGGAAGGGGAAG+CGG + chr5.3:80366242-80366261 MS.gene75794:CDS 55.0%
! CTCCCCTCAGCCTTGATTTG+AGG + chr5.3:80366565-80366584 MS.gene75794:CDS 55.0%
! TCATCATCAGGAGGTGGTGG+TGG - chr5.3:80366522-80366541 None:intergenic 55.0%
!! CAGGAGGTGGTGGTGGAAAA+GGG - chr5.3:80366515-80366534 None:intergenic 55.0%
!! TCAGGAGGTGGTGGTGGAAA+AGG - chr5.3:80366516-80366535 None:intergenic 55.0%
ACCACCGAGTGCTTGTCCAG+AGG - chr5.3:80366340-80366359 None:intergenic 60.0%
ACCTCTGGACAAGCACTCGG+TGG + chr5.3:80366336-80366355 MS.gene75794:CDS 60.0%
ATGGTGCCTCAGACTCGTGG+TGG + chr5.3:80366183-80366202 MS.gene75794:CDS 60.0%
GCGTAAGGAATTCGGCTCCG+GGG + chr5.3:80365657-80365676 MS.gene75794:CDS 60.0%
TGGACCAGCAGTACCCCTCA+AGG + chr5.3:80366096-80366115 MS.gene75794:CDS 60.0%
! CCTCAGACTCGTGGTGGTGA+CGG + chr5.3:80366189-80366208 MS.gene75794:CDS 60.0%
CCGTCACCACCACGAGTCTG+AGG - chr5.3:80366192-80366211 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 80365592 80366599 80365592 ID=MS.gene75794
chr5.3 mRNA 80365592 80366599 80365592 ID=MS.gene75794.t1;Parent=MS.gene75794
chr5.3 exon 80365592 80366599 80365592 ID=MS.gene75794.t1.exon1;Parent=MS.gene75794.t1
chr5.3 CDS 80365592 80366599 80365592 ID=cds.MS.gene75794.t1;Parent=MS.gene75794.t1
Gene Sequence

>MS.gene75794

ATGAAAGATCATCATCAACATCGTCCATGTTCTTCTTCATCTGTTTCTGTTACTGGTAAGAAGAAGCGTAAGGAATTCGGCTCCGGGGAATCATCATCATCTGGTAATAACAACAACAACATTGCTCGTAGTTGCACTGAATGCGGTAAGATATTCTGGTCATGGAAGGCTCTTTTCGGTCACATGCGTTGTCATCCTGAGCGTCAATGGAGAGGAATTAACCCTCCTCCTAATTTCAGAAGACCACAACTCATCAATACCGCGACTCCAGAAGAACAGGAAGGTGCTGCTTCTTTGCTCTTACTTGCAAATTCAAATCCAAAGAACAAGAACAAGAAACCAGCAGTTGCAACAACAACAACGGTGGTGGATGATCAGTTTGTGTGTTCGTGTTGCAACAAAGTATTTGGATCTCATCAGGCACTTGGAGGACACAGGGCTAGTCACAAGAATGTCAAGGGTTGTTTCGCCAATACAACAACAACAATAACCGCTTCTTCTACGTGGACCAGCAGTACCCCTCAAGGAATTGAAATTGGAATTGGAGGAGGAGATCATGCTTCTGTTGATCACGATGACAACCCAATGATCATGGTGCCTCAGACTCGTGGTGGTGACGGTTATAATAACAATAACAATAACAATGTTGGTGGAAACGTGGAAGGGGAAGCGGTTAATAGCAGTAATAACGAAATCATAAGCATCGGAGGAGGACACAAGTGTAGCATATGTTTGAGGGTATTCACCTCTGGACAAGCACTCGGTGGTCACAAAAGATGTCATTGGGAAAAAGGGGAAACCACCACACCATCAACAACATTACCATTCGATTCTTCTTCTACCGCAACTGCAACTGCAACTGCAACAACATCCAACAACAACAAGTCTAGTAGTGTTGTTAATGTCGTTGATTTGAATTTCCCTTTTCCACCACCACCTCCTGATGATGATGATCATCATCCCGATTCTTCTTCTCCCCTCAGCCTTGATTTGAGGTTGGGACTTTAA
Protein sequence

>MS.gene75794.t1

MKDHHQHRPCSSSSVSVTGKKKRKEFGSGESSSSGNNNNNIARSCTECGKIFWSWKALFGHMRCHPERQWRGINPPPNFRRPQLINTATPEEQEGAASLLLLANSNPKNKNKKPAVATTTTVVDDQFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTTITASSTWTSSTPQGIEIGIGGGDHASVDHDDNPMIMVPQTRGGDGYNNNNNNNVGGNVEGEAVNSSNNEIISIGGGHKCSICLRVFTSGQALGGHKRCHWEKGETTTPSTTLPFDSSSTATATATATTSNNNKSSSVVNVVDLNFPFPPPPPDDDDHHPDSSSPLSLDLRLGL